HHsearch alignment for GI: 254780934 and conserved domain: cd00198

>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=99.78  E-value=1.8e-17  Score=122.56  Aligned_cols=151  Identities=28%  Similarity=0.361  Sum_probs=120.0

Q ss_pred             EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECCC--CHHHHHHHHHH
Q ss_conf             2499996578645113135313799999988763221002366567348999982685056102047--86899999860
Q gi|254780934|r  172 LDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEW--GVSHLQRKIKY  249 (374)
Q Consensus       172 ~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~~~i~~  249 (374)
T Consensus         1 ~div~vlD~S~Sm~~------~~~~~~k~~~~~~~~~l~~~---~~~~~v~vv~f~~~~~~~~~~~~~~~~~~~~~~i~~   71 (161)
T cd00198           1 ADIVFLLDVSGSMGG------EKLDKAKEALKALVSSLSAS---PPGDRVGLVTFGSNARVVLPLTTDTDKADLLEAIDA   71 (161)
T ss_pred             CEEEEEEECCCCCCC------HHHHHHHHHHHHHHHHHHHC---CCCCEEEEEEECCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf             909999918899880------79999999999999987655---999889999937951488147412579999997751


Q ss_pred             CCC-CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             133-6877444203676776432223333102578865642799980687788888068999999999789879999924
Q gi|254780934|r  250 LSK-FGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIR  328 (374)
Q Consensus       250 l~~-~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytIg~~  328 (374)
T Consensus        72 ~~~~~~g~t~~~~al~~a~~~~~~~~---------~~~~~~~iiliTDG~~~~~~--~~~~~~~~~~~~~~v~i~~igig  140 (161)
T cd00198          72 LKKGLGGGTNIGAALRLALELLKSAK---------RPNARRVIILLTDGEPNDGP--ELLAEAARELRKLGITVYTIGIG  140 (161)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHC---------CCCCCEEEEEECCCCCCCCH--HHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             35689998389999999999987532---------55565179996789989873--67999999999779989999966


Q ss_pred             CCCCHHHHHHHCCC
Q ss_conf             82227889982389
Q gi|254780934|r  329 VIRSHEFLRACASP  342 (374)
Q Consensus       329 ~~~~~~~L~~~As~  342 (374)
T Consensus       141 ~~~~~~~l~~ia~~  154 (161)
T cd00198         141 DDANEDELKEIADK  154 (161)
T ss_pred             HHHCHHHHHHHHHC
T ss_conf             11199999999838