HHsearch alignment for GI: 254780934 and conserved domain: cd00198
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=99.78 E-value=1.8e-17 Score=122.56 Aligned_cols=151 Identities=28% Similarity=0.361 Sum_probs=120.0
Q ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECCC--CHHHHHHHHHH
Q ss_conf 2499996578645113135313799999988763221002366567348999982685056102047--86899999860
Q gi|254780934|r 172 LDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEW--GVSHLQRKIKY 249 (374)
Q Consensus 172 ~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~~~i~~ 249 (374)
T Consensus 1 ~div~vlD~S~Sm~~------~~~~~~k~~~~~~~~~l~~~---~~~~~v~vv~f~~~~~~~~~~~~~~~~~~~~~~i~~ 71 (161)
T cd00198 1 ADIVFLLDVSGSMGG------EKLDKAKEALKALVSSLSAS---PPGDRVGLVTFGSNARVVLPLTTDTDKADLLEAIDA 71 (161)
T ss_pred CEEEEEEECCCCCCC------HHHHHHHHHHHHHHHHHHHC---CCCCEEEEEEECCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 909999918899880------79999999999999987655---999889999937951488147412579999997751
Q ss_pred CCC-CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 133-6877444203676776432223333102578865642799980687788888068999999999789879999924
Q gi|254780934|r 250 LSK-FGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIR 328 (374)
Q Consensus 250 l~~-~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytIg~~ 328 (374)
T Consensus 72 ~~~~~~g~t~~~~al~~a~~~~~~~~---------~~~~~~~iiliTDG~~~~~~--~~~~~~~~~~~~~~v~i~~igig 140 (161)
T cd00198 72 LKKGLGGGTNIGAALRLALELLKSAK---------RPNARRVIILLTDGEPNDGP--ELLAEAARELRKLGITVYTIGIG 140 (161)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHC---------CCCCCEEEEEECCCCCCCCH--HHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 35689998389999999999987532---------55565179996789989873--67999999999779989999966
Q ss_pred CCCCHHHHHHHCCC
Q ss_conf 82227889982389
Q gi|254780934|r 329 VIRSHEFLRACASP 342 (374)
Q Consensus 329 ~~~~~~~L~~~As~ 342 (374)
T Consensus 141 ~~~~~~~l~~ia~~ 154 (161)
T cd00198 141 DDANEDELKEIADK 154 (161)
T ss_pred HHHCHHHHHHHHHC
T ss_conf 11199999999838