HHsearch alignment for GI: 254780934 and conserved domain: cd01454
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=99.56 E-value=4.9e-13 Score=96.20 Aligned_cols=153 Identities=22% Similarity=0.306 Sum_probs=108.3
Q ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCC--------EEEEECCCC-HHH
Q ss_conf 24999965786451131353137999999887632210023665673489999826850--------561020478-689
Q gi|254780934|r 172 LDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKI--------EEFFLLEWG-VSH 242 (374)
Q Consensus 172 ~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~t~~-~~~ 242 (374)
T Consensus 1 ~aV~lLlD~SgSM~~~-----~~i~~a~~a~~~l~~aL~~~-----g~~~~v~gF~s~~~~r~~~~~~~~k~f~e~~~~~ 70 (174)
T cd01454 1 LAVTLLLDLSGSMRSD-----RRIDVAKKAAVLLAEALEAC-----GVPHAILGFTTDAGGRERVRWIKIKDFDESLHER 70 (174)
T ss_pred CEEEEEEECCCCCCCC-----CHHHHHHHHHHHHHHHHHHC-----CCCEEEEECCCCCCCCCCEEEEECCCCCCCHHHH
T ss_conf 9899999898688998-----48999999999999999976-----9956999515788984434789323667421145
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCC-------CHHHHHHHHHH
Q ss_conf 99998601336877444203676776432223333102578865642799980687788888-------06899999999
Q gi|254780934|r 243 LQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKE-------DQQSLYYCNEA 315 (374)
Q Consensus 243 ~~~~i~~l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~-------~~~~~~~~~~~ 315 (374)
T Consensus 71 ~~~~i~~l~~~g-~Tr~G~Air~a~~~L~~~-----------~~~rkiliviSDG~P~D~~~~~~~~~~~~D~~~av~e~ 138 (174)
T cd01454 71 ARKRLAALSPGG-NTRDGAAIRHAAERLLAR-----------PEKRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEA 138 (174)
T ss_pred HHHHHHCCCCCC-CCCCHHHHHHHHHHHHHC-----------CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 688885118789-896179999999998639-----------76667999983899766777887553899999999999
Q ss_pred HHCCCEEEEEEECCCC---CHHHHHHHCCCCCEE
Q ss_conf 9789879999924822---278899823898179
Q gi|254780934|r 316 KKRGAIVYAIGIRVIR---SHEFLRACASPNSFY 346 (374)
Q Consensus 316 k~~gi~IytIg~~~~~---~~~~L~~~As~~~~~ 346 (374)
T Consensus 139 ~~~GI~~~~i~i~~~~~~~~~~~l~~i~g~~~~~ 172 (174)
T cd01454 139 RKLGIEVFGITIDRDATTVDKEYLKNIFGEEGYA 172 (174)
T ss_pred HHCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEE
T ss_conf 9879889999989855566999999842878778