HHsearch alignment for GI: 254780934 and conserved domain: cd01455
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=98.30 E-value=0.00012 Score=46.23 Aligned_cols=175 Identities=12% Similarity=0.164 Sum_probs=106.1
Q ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCE------EEEECCCCHHHHH--H
Q ss_conf 9999657864511313531379999998876322100236656734899998268505------6102047868999--9
Q gi|254780934|r 174 MMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIE------EFFLLEWGVSHLQ--R 245 (374)
Q Consensus 174 i~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~t~~~~~~~--~ 245 (374)
T Consensus 3 lr~v~DvSgSM-YRFNg~DgRL~R~lEa~~MvMEaf~g~e---~k~~ydIvGHSGd~~~I~lV~~~~~Pk~~keRl~vl~ 78 (191)
T cd01455 3 LKLVVDVSGSM-YRFNGYDGRLDRSLEAVVMVMEAFDGFE---DKIQYDIIGHSGDGPCVPFVKTNHPPKNNKERLETLK 78 (191)
T ss_pred EEEEEECCCCE-EEECCCCHHHHHHHHHHHHHHHHHHCCC---CEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 69999735442-3304753289999999999999861754---0057887502688775102348999986689999999
Q ss_pred HHHHCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH-HHCCCEEE
Q ss_conf 98601336-87744420367677643222333310257886564279998068778888806899999999-97898799
Q gi|254780934|r 246 KIKYLSKF-GVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEA-KKRGAIVY 323 (374)
Q Consensus 246 ~i~~l~~~-g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~-k~~gi~Iy 323 (374)
T Consensus 79 ~M~AHsQyC~sGD~Tlea~~~Ai~~l~a~~d----------~De~fVivlSDANL~RYgI~--p~~l~~~l~~~p~V~a~ 146 (191)
T cd01455 79 MMHAHSQFCWSGDHTVEATEFAIKELAAKED----------FDEAIVIVLSDANLERYGIQ--PKKLADALAREPNVNAF 146 (191)
T ss_pred HHHHHHHHEECCCCHHHHHHHHHHHHHHCCC----------CCCCEEEEECCCCHHHCCCC--HHHHHHHHHCCCCCCEE
T ss_conf 8631201002588448999999998753026----------77608999814764431889--89999997338776689
Q ss_pred EEEECCCCCH-HHHHHHCCCCCEEEECCHHHHHHHHHHHHHH
Q ss_conf 9992482227-8899823898179838989999999999984
Q gi|254780934|r 324 AIGIRVIRSH-EFLRACASPNSFYLVENPHSMYDAFSHIGKD 364 (374)
Q Consensus 324 tIg~~~~~~~-~~L~~~As~~~~~~a~~~~~L~~~f~~I~~~ 364 (374)
T Consensus 147 ~IfIgslg~eA~~l~~~lP~G~~fVc~dt~~lP~il~qIfts 188 (191)
T cd01455 147 VIFIGSLSDEADQLQRELPAGKAFVCMDTSELPHIMQQIFTS 188 (191)
T ss_pred EEEEECHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHH
T ss_conf 999735167999999748997417853653678999999887