HHsearch alignment for GI: 254780934 and conserved domain: cd01456
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.91 E-value=4.5e-23 Score=155.96 Aligned_cols=169 Identities=19% Similarity=0.126 Sum_probs=123.9
Q ss_pred ECCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEE---------
Q ss_conf 10377872499996578645113135313799999988763221002366567348999982685056102---------
Q gi|254780934|r 165 NSQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFL--------- 235 (374)
Q Consensus 165 ~~~~~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 235 (374)
T Consensus 14 ~~~~~~P~~~~lVlD~SGSM~~~~~~g~~rl~~ak~a~~~~v~~l~~------~drvgLv~F~~~~~~~~d~~~~~~~~~ 87 (206)
T cd01456 14 ETEPQLPPNVAIVLDNSGSMREVDGGGETRLDNAKAALDETANALPD------GTRLGLWTFSGDGDNPLDVRVLVPKGC 87 (206)
T ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC------CCEEEEEEECCCCCCCCCCCEECCCCC
T ss_conf 56898987389999798787787877645999999999999985799------987999997786777888513214565
Q ss_pred --------CCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHH
Q ss_conf --------047868999998601336877444203676776432223333102578865642799980687788888068
Q gi|254780934|r 236 --------LEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQ 307 (374)
Q Consensus 236 --------~t~~~~~~~~~i~~l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~ 307 (374)
T Consensus 88 ~~~~~~~~~~~~r~~l~~~i~~l~~~~G~T~l~~al~~a~~~~~-------------~~~~~~IvLlTDG~~~~g~~~~~ 154 (206)
T cd01456 88 LTAPVNGFPSAQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD-------------PGRVNVVVLITDGEDTCGPDPCE 154 (206)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC-------------CCCCCEEEEEECCCCCCCCCHHH
T ss_conf 44434552377899999999745778896479999999998627-------------78764799992376446888599
Q ss_pred HHHHHHH--HHHCCCEEEEEEECCCCCHHHHHHHC--CCCCE-EEECCHH
Q ss_conf 9999999--99789879999924822278899823--89817-9838989
Q gi|254780934|r 308 SLYYCNE--AKKRGAIVYAIGIRVIRSHEFLRACA--SPNSF-YLVENPH 352 (374)
Q Consensus 308 ~~~~~~~--~k~~gi~IytIg~~~~~~~~~L~~~A--s~~~~-~~a~~~~ 352 (374)
T Consensus 155 ~~~~l~~~~~~~~~v~V~tig~G~d~d~~~L~~IA~~tgG~y~y~~~d~~ 204 (206)
T cd01456 155 VARELAKRRTPAPPIKVNVIDFGGDADRAELEAIAEATGGTYAYNQSDLA 204 (206)
T ss_pred HHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 99999983177999589999718865899999999742978995167602