HHsearch alignment for GI: 254780934 and conserved domain: cd01456

>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.91  E-value=4.5e-23  Score=155.96  Aligned_cols=169  Identities=19%  Similarity=0.126  Sum_probs=123.9

Q ss_pred             ECCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEE---------
Q ss_conf             10377872499996578645113135313799999988763221002366567348999982685056102---------
Q gi|254780934|r  165 NSQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFL---------  235 (374)
Q Consensus       165 ~~~~~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  235 (374)
T Consensus        14 ~~~~~~P~~~~lVlD~SGSM~~~~~~g~~rl~~ak~a~~~~v~~l~~------~drvgLv~F~~~~~~~~d~~~~~~~~~   87 (206)
T cd01456          14 ETEPQLPPNVAIVLDNSGSMREVDGGGETRLDNAKAALDETANALPD------GTRLGLWTFSGDGDNPLDVRVLVPKGC   87 (206)
T ss_pred             CCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC------CCEEEEEEECCCCCCCCCCCEECCCCC
T ss_conf             56898987389999798787787877645999999999999985799------987999997786777888513214565


Q ss_pred             --------CCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHH
Q ss_conf             --------047868999998601336877444203676776432223333102578865642799980687788888068
Q gi|254780934|r  236 --------LEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQ  307 (374)
Q Consensus       236 --------~t~~~~~~~~~i~~l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~  307 (374)
T Consensus        88 ~~~~~~~~~~~~r~~l~~~i~~l~~~~G~T~l~~al~~a~~~~~-------------~~~~~~IvLlTDG~~~~g~~~~~  154 (206)
T cd01456          88 LTAPVNGFPSAQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD-------------PGRVNVVVLITDGEDTCGPDPCE  154 (206)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC-------------CCCCCEEEEEECCCCCCCCCHHH
T ss_conf             44434552377899999999745778896479999999998627-------------78764799992376446888599


Q ss_pred             HHHHHHH--HHHCCCEEEEEEECCCCCHHHHHHHC--CCCCE-EEECCHH
Q ss_conf             9999999--99789879999924822278899823--89817-9838989
Q gi|254780934|r  308 SLYYCNE--AKKRGAIVYAIGIRVIRSHEFLRACA--SPNSF-YLVENPH  352 (374)
Q Consensus       308 ~~~~~~~--~k~~gi~IytIg~~~~~~~~~L~~~A--s~~~~-~~a~~~~  352 (374)
T Consensus       155 ~~~~l~~~~~~~~~v~V~tig~G~d~d~~~L~~IA~~tgG~y~y~~~d~~  204 (206)
T cd01456         155 VARELAKRRTPAPPIKVNVIDFGGDADRAELEAIAEATGGTYAYNQSDLA  204 (206)
T ss_pred             HHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             99999983177999589999718865899999999742978995167602