HHsearch alignment for GI: 254780934 and conserved domain: cd01457
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=98.98 E-value=2.3e-08 Score=68.39 Aligned_cols=157 Identities=17% Similarity=0.149 Sum_probs=96.1
Q ss_pred CEEEEEEECCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 72499996578645113135-31379999998876322100236656734899998268505610204786899999860
Q gi|254780934|r 171 RLDMMIVLDVSRSMESFFDS-SITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEWGVSHLQRKIKY 249 (374)
Q Consensus 171 ~~di~~VlD~SgSM~~~~~~-~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~i~~ 249 (374)
T Consensus 2 ~rD~v~lIDdSgSM~~~d~~~~~sRW~~a~~al~~iA~~c~~~D~DGI----dvyfln~~~~~~--~~~~~~~V~~iF~~ 75 (199)
T cd01457 2 NRDYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCEEYDSDGI----TVYLFSGDFRRY--DNVNSSKVDQLFAE 75 (199)
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC----EEEEEECCCCCC--CCCCHHHHHHHHHC
T ss_conf 977799996888766776788876299999999999999987488998----799962776456--88899999999855
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-EEEEEEECCCCCCCCCCH-HHHHHHHHHH-HCCCEEEEEE
Q ss_conf 133687744420367677643222333310257886564-279998068778888806-8999999999-7898799999
Q gi|254780934|r 250 LSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYK-KIIVFMTDGENLSTKEDQ-QSLYYCNEAK-KRGAIVYAIG 326 (374)
Q Consensus 250 l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~-k~iillTDG~~~~~~~~~-~~~~~~~~~k-~~gi~IytIg 326 (374)
T Consensus 76 ~~P~G-~T~~g~~L~~il~~y~~r~~~------~~~kp~g~~iIVITDG~p~D~~av~~~Ii~aa~kLd~~~qlgIqF~Q 148 (199)
T cd01457 76 NSPDG-GTNLAAVLQDALNNYFQRKEN------GATCPEGETFLVITDGAPDDKDAVERVIIKASDELDADNELAISFLQ 148 (199)
T ss_pred CCCCC-CCCHHHHHHHHHHHHHHHHHC------CCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 89899-796379999998999873200------68999860799982799798288999999999863440100367778
Q ss_pred ECCCC-CHHHHHHHC
Q ss_conf 24822-278899823
Q gi|254780934|r 327 IRVIR-SHEFLRACA 340 (374)
Q Consensus 327 ~~~~~-~~~~L~~~A 340 (374)
T Consensus 149 VG~D~~A~~fL~~LD 163 (199)
T cd01457 149 IGRDPAATAFLKALD 163 (199)
T ss_pred ECCCHHHHHHHHHHC
T ss_conf 559688999999858