HHsearch alignment for GI: 254780934 and conserved domain: cd01462
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.70 E-value=1.6e-15 Score=111.03 Aligned_cols=143 Identities=19% Similarity=0.129 Sum_probs=108.9
Q ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEE-EEECCCCHHHHHHHHHHCC
Q ss_conf 499996578645113135313799999988763221002366567348999982685056-1020478689999986013
Q gi|254780934|r 173 DMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEE-FFLLEWGVSHLQRKIKYLS 251 (374)
Q Consensus 173 di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~~~~~~~~~i~~l~ 251 (374)
T Consensus 2 pvV~vlD~SGSM~G~------~~~~ak~~~~~l~~~l~~~-----~~~~~lv~F~~~~~~~~~~~~~~~~~~~~~i~~~~ 70 (152)
T cd01462 2 PVILLVDQSGSMYGA------PEEVAKAVALALLRIALAE-----NRDTYLILFDSEFQTKIVDKTDDLEEPVEFLSGVQ 70 (152)
T ss_pred CEEEEEECCCCCCCC------HHHHHHHHHHHHHHHHHHC-----CCEEEEEEECCCCEEEECCCCCCHHHHHHHHHHCC
T ss_conf 999999799998980------6999999999999973233-----98099999168735771587645999999997253
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 36877444203676776432223333102578865642799980687788888068999999999789879999924822
Q gi|254780934|r 252 KFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIR 331 (374)
Q Consensus 252 ~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytIg~~~~~ 331 (374)
T Consensus 71 ~~G-GT~i~~aL~~A~~~l~~~-----------~~~~~~IvlITDG~~~~~--~~~~~~~~~~~~~~~~r~~~~~iG~~~ 136 (152)
T cd01462 71 LGG-GTDINKALRYALELIERR-----------DPRKADIVLITDGYEGGV--SDELLREVELKRSRVARFVALALGDHG 136 (152)
T ss_pred CCC-CCCHHHHHHHHHHHHHCC-----------CCCCCEEEEEECCCCCCC--HHHHHHHHHHHHHCCEEEEEEEECCCC
T ss_conf 689-865799999999987425-----------765646999826756798--399999999998389199999989998
Q ss_pred CHHHHHHHC
Q ss_conf 278899823
Q gi|254780934|r 332 SHEFLRACA 340 (374)
Q Consensus 332 ~~~~L~~~A 340 (374)
T Consensus 137 ~p~~~~~~~ 145 (152)
T cd01462 137 NPGYDRISA 145 (152)
T ss_pred CCHHHHHHH
T ss_conf 827878766