HHsearch alignment for GI: 254780934 and conserved domain: cd01463
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=99.89 E-value=7.7e-22 Score=148.63 Aligned_cols=166 Identities=18% Similarity=0.235 Sum_probs=125.3
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEE---------CCCC
Q ss_conf 7872499996578645113135313799999988763221002366567348999982685056102---------0478
Q gi|254780934|r 169 DARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFL---------LEWG 239 (374)
Q Consensus 169 ~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~t~~ 239 (374)
T Consensus 11 ~~Pkdvv~vlD~SGSM~g~------kl~~ak~a~~~il~~L~~~------D~~~iv~Fs~~~~~~~p~~~~~~~~~t~~n 78 (190)
T cd01463 11 TSPKDIVILLDVSGSMTGQ------RLHLAKQTVSSILDTLSDN------DFFNIITFSNEVNPVVPCFNDTLVQATTSN 78 (190)
T ss_pred CCCCEEEEEEECCCCCCCC------HHHHHHHHHHHHHHHCCCC------CEEEEEEECCCCEEEECCCCCCEEECCHHH
T ss_conf 8982699999799988973------4999999999999819987------799999968975363024568433689999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHH--H
Q ss_conf 68999998601336877444203676776432223333102578865642799980687788888068999999999--7
Q gi|254780934|r 240 VSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAK--K 317 (374)
Q Consensus 240 ~~~~~~~i~~l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k--~ 317 (374)
T Consensus 79 ~~~~~~~i~~l~~~G-~Tn~~~al~~A~~~l~~~~~~~~--~~~~~~~~~~IillTDG~~~~---~~~i~~~~~~~~~~~ 152 (190)
T cd01463 79 KKVLKEALDMLEAKG-IANYTKALEFAFSLLLKNLQSNH--SGSRSQCNQAIMLITDGVPEN---YKEIFDKYNWDKNSE 152 (190)
T ss_pred HHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCEEEEEECCCCCC---HHHHHHHHHHHHCCC
T ss_conf 999999998285798-72489999999999987420155--665555551599983698875---788999999975579
Q ss_pred CCCEEEEEEECCC-CCHHHHHHHC--CCCCEEEECCHH
Q ss_conf 8987999992482-2278899823--898179838989
Q gi|254780934|r 318 RGAIVYAIGIRVI-RSHEFLRACA--SPNSFYLVENPH 352 (374)
Q Consensus 318 ~gi~IytIg~~~~-~~~~~L~~~A--s~~~~~~a~~~~ 352 (374)
T Consensus 153 ~~i~ift~G~G~~~~d~~~L~~iA~~~~G~y~~I~~~d 190 (190)
T cd01463 153 IPVRVFTYLIGREVTDRREIQWMACENKGYYSHIQSLD 190 (190)
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCC
T ss_conf 98799999967997787999999980995699788898