HHsearch alignment for GI: 254780934 and conserved domain: cd01463

>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=99.89  E-value=7.7e-22  Score=148.63  Aligned_cols=166  Identities=18%  Similarity=0.235  Sum_probs=125.3

Q ss_pred             CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEE---------CCCC
Q ss_conf             7872499996578645113135313799999988763221002366567348999982685056102---------0478
Q gi|254780934|r  169 DARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFL---------LEWG  239 (374)
Q Consensus       169 ~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~t~~  239 (374)
T Consensus        11 ~~Pkdvv~vlD~SGSM~g~------kl~~ak~a~~~il~~L~~~------D~~~iv~Fs~~~~~~~p~~~~~~~~~t~~n   78 (190)
T cd01463          11 TSPKDIVILLDVSGSMTGQ------RLHLAKQTVSSILDTLSDN------DFFNIITFSNEVNPVVPCFNDTLVQATTSN   78 (190)
T ss_pred             CCCCEEEEEEECCCCCCCC------HHHHHHHHHHHHHHHCCCC------CEEEEEEECCCCEEEECCCCCCEEECCHHH
T ss_conf             8982699999799988973------4999999999999819987------799999968975363024568433689999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHH--H
Q ss_conf             68999998601336877444203676776432223333102578865642799980687788888068999999999--7
Q gi|254780934|r  240 VSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAK--K  317 (374)
Q Consensus       240 ~~~~~~~i~~l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k--~  317 (374)
T Consensus        79 ~~~~~~~i~~l~~~G-~Tn~~~al~~A~~~l~~~~~~~~--~~~~~~~~~~IillTDG~~~~---~~~i~~~~~~~~~~~  152 (190)
T cd01463          79 KKVLKEALDMLEAKG-IANYTKALEFAFSLLLKNLQSNH--SGSRSQCNQAIMLITDGVPEN---YKEIFDKYNWDKNSE  152 (190)
T ss_pred             HHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCEEEEEECCCCCC---HHHHHHHHHHHHCCC
T ss_conf             999999998285798-72489999999999987420155--665555551599983698875---788999999975579


Q ss_pred             CCCEEEEEEECCC-CCHHHHHHHC--CCCCEEEECCHH
Q ss_conf             8987999992482-2278899823--898179838989
Q gi|254780934|r  318 RGAIVYAIGIRVI-RSHEFLRACA--SPNSFYLVENPH  352 (374)
Q Consensus       318 ~gi~IytIg~~~~-~~~~~L~~~A--s~~~~~~a~~~~  352 (374)
T Consensus       153 ~~i~ift~G~G~~~~d~~~L~~iA~~~~G~y~~I~~~d  190 (190)
T cd01463         153 IPVRVFTYLIGREVTDRREIQWMACENKGYYSHIQSLD  190 (190)
T ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCC
T ss_conf             98799999967997787999999980995699788898