HHsearch alignment for GI: 254780934 and conserved domain: cd01465
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=99.96 E-value=2.9e-27 Score=180.97 Aligned_cols=165 Identities=16% Similarity=0.251 Sum_probs=138.8
Q ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECC--CCHHHHHHHHHH
Q ss_conf 249999657864511313531379999998876322100236656734899998268505610204--786899999860
Q gi|254780934|r 172 LDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLE--WGVSHLQRKIKY 249 (374)
Q Consensus 172 ~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t--~~~~~~~~~i~~ 249 (374)
T Consensus 1 ldiv~vlD~SGSM~g~------~~~~~k~a~~~~l~~l~~------~dr~~iv~F~~~~~~~~~~~~~~~~~~~~~~i~~ 68 (170)
T cd01465 1 LNLVFVIDRSGSMDGP------KLPLVKSALKLLVDQLRP------DDRLAIVTYDGAAETVLPATPVRDKAAILAAIDR 68 (170)
T ss_pred CCEEEEEECCCCCCCC------HHHHHHHHHHHHHHHCCC------CCEEEEEEECCCCEECCCCCCHHHHHHHHHHHHC
T ss_conf 9199999088688971------999999999999985898------7879999835861551587866679999998743
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCC-CCHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 133687744420367677643222333310257886564279998068778888-8068999999999789879999924
Q gi|254780934|r 250 LSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTK-EDQQSLYYCNEAKKRGAIVYAIGIR 328 (374)
Q Consensus 250 l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~-~~~~~~~~~~~~k~~gi~IytIg~~ 328 (374)
T Consensus 69 l~~~G-~T~~~~~l~~a~~~~~~~~---------~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~i~i~tiGiG 138 (170)
T cd01465 69 LTAGG-STAGGAGIQLGYQEAQKHF---------VPGGVNRILLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFG 138 (170)
T ss_pred CCCCC-CCCHHHHHHHHHHHHHHCC---------CCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 89899-8527799999999998633---------7887506999815885679889899999999987438862489808
Q ss_pred CCCCHHHHHHHC--CCCCEEEECCHHHHHHHH
Q ss_conf 822278899823--898179838989999999
Q gi|254780934|r 329 VIRSHEFLRACA--SPNSFYLVENPHSMYDAF 358 (374)
Q Consensus 329 ~~~~~~~L~~~A--s~~~~~~a~~~~~L~~~f 358 (374)
T Consensus 139 ~~~~~~~L~~iA~~~~G~~~~v~~~~~l~~~f 170 (170)
T cd01465 139 DNYNEDLMEAIADAGNGNTAYIDNLAEARKVF 170 (170)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCHHHHHHHC
T ss_conf 87999999999975798899849999999639