HHsearch alignment for GI: 254780934 and conserved domain: cd01472
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=99.83 E-value=4.4e-19 Score=132.22 Aligned_cols=157 Identities=23% Similarity=0.349 Sum_probs=125.4
Q ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECC--CCHHHHHHHHHHC
Q ss_conf 49999657864511313531379999998876322100236656734899998268505610204--7868999998601
Q gi|254780934|r 173 DMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLE--WGVSHLQRKIKYL 250 (374)
Q Consensus 173 di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t--~~~~~~~~~i~~l 250 (374)
T Consensus 2 Di~fvlD~S~Sv~~~------~f~~~k~fi~~li~~~~i~---~~~~rvgvv~fs~~~~~~~~l~~~~~~~~l~~~i~~i 72 (164)
T cd01472 2 DIVFLVDGSESIGLS------NFNLVKDFVKRVVERLDIG---PDGVRVGVVQYSDDPRTEFYLNTYRSKDDVLEAVKNL 72 (164)
T ss_pred CEEEEEECCCCCCHH------HHHHHHHHHHHHHHHCCCC---CCCCEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 799999797998879------9999999999999964768---8860899998247415874454669889999999861
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 33687744420367677643222333310257886564279998068778888806899999999978987999992482
Q gi|254780934|r 251 SKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVI 330 (374)
Q Consensus 251 ~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytIg~~~~ 330 (374)
T Consensus 73 ~~~~g~t~~~~AL~~~~~~~~~~~~------~~r~~~~kvvvllTDG~s~~-----~~~~~a~~lr~~Gi~v~~VGig~- 140 (164)
T cd01472 73 RYIGGGTNTGKALKYVRENLFTEAS------GSREGVPKVLVVITDGKSQD-----DVEEPAVELKQAGIEVFAVGVKN- 140 (164)
T ss_pred HCCCCCCHHHHHHHHHHHHHHCCCC------CCCCCCEEEEEEEECCCCCC-----HHHHHHHHHHHCCCEEEEEECCC-
T ss_conf 1668975299999999998635357------87678515999983799864-----08899999998898899997884-
Q ss_pred CCHHHHHHHCCCC---CEEEECC
Q ss_conf 2278899823898---1798389
Q gi|254780934|r 331 RSHEFLRACASPN---SFYLVEN 350 (374)
Q Consensus 331 ~~~~~L~~~As~~---~~~~a~~ 350 (374)
T Consensus 141 ~~~~~L~~iAs~p~~~~~~~~~~ 163 (164)
T cd01472 141 ADEEELKQIASDPKELYVFNVAD 163 (164)
T ss_pred CCHHHHHHHHCCCCHHEEEECCC
T ss_conf 79999999967993783896588