HHsearch alignment for GI: 254780934 and conserved domain: cd01479
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=90.96 E-value=1 Score=22.86 Aligned_cols=174 Identities=13% Similarity=0.128 Sum_probs=89.2
Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEE------------------
Q ss_conf 72499996578645113135313799999988763221002366567348999982685056------------------
Q gi|254780934|r 171 RLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEE------------------ 232 (374)
Q Consensus 171 ~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 232 (374)
T Consensus 3 Pp~y~FvIDvS~~av~s-----G~l~~~~~sI~~~L~~lp~---~~~rt~VgiiTfds~vhfy~l~~~l~~pqm~vv~Dl 74 (244)
T cd01479 3 PAVYVFLIDVSYNAIKS-----GLLATACEALLSNLDNLPG---DDPRTRVGFITFDSTLHFFNLKSSLEQPQMMVVSDL 74 (244)
T ss_pred CCEEEEEEECCHHHHHH-----CHHHHHHHHHHHHHHHCCC---CCCCEEEEEEEECCEEEEEECCCCCCCCEEEEEECC
T ss_conf 98899999898999876-----8799999999999985778---888628999996887999966888888716873066
Q ss_pred -----------EEECCCCHHHHHHHHHHCCCC-----CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEC
Q ss_conf -----------102047868999998601336-----8774442036767764322233331025788656427999806
Q gi|254780934|r 233 -----------FFLLEWGVSHLQRKIKYLSKF-----GVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTD 296 (374)
Q Consensus 233 -----------~~~~t~~~~~~~~~i~~l~~~-----g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTD 296 (374)
T Consensus 75 ~d~f~P~~~~llv~l~e~~~~i~~lL~~lp~~f~~~~~~~~~~G~Al~aA~~~l~~~---------G----GkI~~-f~s 140 (244)
T cd01479 75 DDPFLPLPDGLLVNLKESRQVIEDLLDQIPEMFQDTKETESALGPALQAAFLLLKET---------G----GKIIV-FQS 140 (244)
T ss_pred CCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC---------C----CEEEE-EEC
T ss_conf 555678874436525998999999999878875068988643889999999999734---------9----88999-964
Q ss_pred CCCCCCC-----------------------CCHHHHHHHHHHHHCCCEEEEEEECCC-CCHHHHHHHC--CCCC-EEEE-
Q ss_conf 8778888-----------------------806899999999978987999992482-2278899823--8981-7983-
Q gi|254780934|r 297 GENLSTK-----------------------EDQQSLYYCNEAKKRGAIVYAIGIRVI-RSHEFLRACA--SPNS-FYLV- 348 (374)
Q Consensus 297 G~~~~~~-----------------------~~~~~~~~~~~~k~~gi~IytIg~~~~-~~~~~L~~~A--s~~~-~~~a- 348 (374)
T Consensus 141 s~Pt~G~G~l~~r~~~~~~~~~~e~~ll~p~~~fY~~la~~~~~~~isvDlF~~~~~~~Dlatl~~l~~~TGG~~~~Yp~ 220 (244)
T cd01479 141 SLPTLGAGKLKSREDPKLLSTDKEKQLLQPQTDFYKKLALECVKSQISVDLFLFSNQYVDVATLGCLSRLTGGQVYYYPS 220 (244)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECC
T ss_conf 79988887550054434568602222038660899999999998592189996268766544430044316724898078
Q ss_pred ---CCHHHHHHHHHHHHHHHH
Q ss_conf ---898999999999998420
Q gi|254780934|r 349 ---ENPHSMYDAFSHIGKDIV 366 (374)
Q Consensus 349 ---~~~~~L~~~f~~I~~~i~ 366 (374)
T Consensus 221 f~~~~~~d~~kl~~dl~~~lt 241 (244)
T cd01479 221 FNFSAPNDVEKLVNELARYLT 241 (244)
T ss_pred CCCCCHHHHHHHHHHHHHHHC
T ss_conf 777677688999999999834