HHsearch alignment for GI: 254780934 and conserved domain: cd01480
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.90 E-value=9.1e-22 Score=148.20 Aligned_cols=172 Identities=22% Similarity=0.234 Sum_probs=137.5
Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC---CCCCCCEEEEEEEECCCCEEEEECC---CCHHHH
Q ss_conf 8724999965786451131353137999999887632210023---6656734899998268505610204---786899
Q gi|254780934|r 170 ARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLI---PDVNNVVQSGLVTFSNKIEEFFLLE---WGVSHL 243 (374)
Q Consensus 170 ~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~t---~~~~~~ 243 (374)
T Consensus 1 gpvDlvFllD~S~Sv~~~------~F~~~k~Fv~~lv~~f~~~~~~~i~~~~~rVgvv~ys~~~~~~~~~~~~~~~~~~l 74 (186)
T cd01480 1 GPVDITFVLDSSESVGLQ------NFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEVEAGFLRDIRNYTSL 74 (186)
T ss_pred CCEEEEEEEECCCCCCHH------HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEEEEECCCCCCCCHHHH
T ss_conf 974699999688987878------99999999999999985301345687743898998558427986047775889999
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 99986013368774442036767764322233331025788656427999806877888880689999999997898799
Q gi|254780934|r 244 QRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVY 323 (374)
Q Consensus 244 ~~~i~~l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~Iy 323 (374)
T Consensus 75 ~~~I~~i~y~gG~T~tg~AL~~a~~~~~~~---------~r~~~~kvlvliTDG~S~~-~~~~~~~~aa~~lr~~GV~if 144 (186)
T cd01480 75 KEAVDNLEYIGGGTFTDCALKYATEQLLEG---------SHQKENKFLLVITDGHSDG-SPDGGIEKAVNEADHLGIKIF 144 (186)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHC---------CCCCCCEEEEEEECCCCCC-CCCHHHHHHHHHHHHCCCEEE
T ss_conf 999975013589862999999999998613---------6789853899984587666-740669999999998798999
Q ss_pred EEEECCCCCHHHHHHHCC-CCCEEEECCHHHHHHHH
Q ss_conf 999248222788998238-98179838989999999
Q gi|254780934|r 324 AIGIRVIRSHEFLRACAS-PNSFYLVENPHSMYDAF 358 (374)
Q Consensus 324 tIg~~~~~~~~~L~~~As-~~~~~~a~~~~~L~~~f 358 (374)
T Consensus 145 aVGVG~~-~~~eL~~IAs~p~~~~~~~~f~~L~~~~ 179 (186)
T cd01480 145 FVAVGSQ-NEEPLSRIACDGKSALYRENFAELLWSF 179 (186)
T ss_pred EEEECCC-CHHHHHHHHCCCCCEEEECCHHHHHCCH
T ss_conf 9994748-8799999858997389736899870111