HHsearch alignment for GI: 254780934 and conserved domain: cd01481
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.79 E-value=2.2e-17 Score=122.07 Aligned_cols=159 Identities=18% Similarity=0.274 Sum_probs=124.8
Q ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECC--CCHHHHHHHHHHC
Q ss_conf 49999657864511313531379999998876322100236656734899998268505610204--7868999998601
Q gi|254780934|r 173 DMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLE--WGVSHLQRKIKYL 250 (374)
Q Consensus 173 di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t--~~~~~~~~~i~~l 250 (374)
T Consensus 2 DlvFllD~S~si~~~------~F~~~k~Fv~~lv~~f~i---~~~~trVgvi~ys~~~~~~f~l~~~~~~~~l~~~I~~i 72 (165)
T cd01481 2 DIVFLIDGSDNVGSG------NFPAIRDFIERIVQSLDV---GPDKIRVAVVQFSDTPRPEFYLNTHSTKADVLGAVRRL 72 (165)
T ss_pred CEEEEEECCCCCCHH------HHHHHHHHHHHHHHHHCC---CCCCEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 789999688998989------999999999999996046---88862788999868647999767768999999999841
Q ss_pred CCCCC-CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 33687-74442036767764322233331025788656427999806877888880689999999997898799999248
Q gi|254780934|r 251 SKFGV-STNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRV 329 (374)
Q Consensus 251 ~~~g~-~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytIg~~~ 329 (374)
T Consensus 73 ~~~~g~~t~tg~AL~~a~~~~f~~~~----g~R~r~~v~kvlvviTdG~s~-----d~~~~~a~~lr~~gV~i~aVGvg~ 143 (165)
T cd01481 73 RLRGGSQLNTGSALDYVVKNLFTKSA----GSRIEEGVPQFLVLITGGKSQ-----DDVERPAVALKRAGIVPFAIGARN 143 (165)
T ss_pred HCCCCCCEEHHHHHHHHHHHHCCCCC----CCCCCCCCCEEEEEEECCCCC-----CHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 04589843699999999997167567----887557998699998489885-----378999999998897899996897
Q ss_pred CCCHHHHHHHCC-CCCEEEECC
Q ss_conf 222788998238-981798389
Q gi|254780934|r 330 IRSHEFLRACAS-PNSFYLVEN 350 (374)
Q Consensus 330 ~~~~~~L~~~As-~~~~~~a~~ 350 (374)
T Consensus 144 -~~~~eL~~IAs~p~~vf~~~~ 164 (165)
T cd01481 144 -ADLAELQQIAFDPSFVFQVSD 164 (165)
T ss_pred -CCHHHHHHHHCCCCCEEECCC
T ss_conf -999999998589877697389