HHsearch alignment for GI: 254780934 and conserved domain: cd01481

>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.79  E-value=2.2e-17  Score=122.07  Aligned_cols=159  Identities=18%  Similarity=0.274  Sum_probs=124.8

Q ss_pred             EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECC--CCHHHHHHHHHHC
Q ss_conf             49999657864511313531379999998876322100236656734899998268505610204--7868999998601
Q gi|254780934|r  173 DMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLE--WGVSHLQRKIKYL  250 (374)
Q Consensus       173 di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t--~~~~~~~~~i~~l  250 (374)
T Consensus         2 DlvFllD~S~si~~~------~F~~~k~Fv~~lv~~f~i---~~~~trVgvi~ys~~~~~~f~l~~~~~~~~l~~~I~~i   72 (165)
T cd01481           2 DIVFLIDGSDNVGSG------NFPAIRDFIERIVQSLDV---GPDKIRVAVVQFSDTPRPEFYLNTHSTKADVLGAVRRL   72 (165)
T ss_pred             CEEEEEECCCCCCHH------HHHHHHHHHHHHHHHHCC---CCCCEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             789999688998989------999999999999996046---88862788999868647999767768999999999841


Q ss_pred             CCCCC-CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             33687-74442036767764322233331025788656427999806877888880689999999997898799999248
Q gi|254780934|r  251 SKFGV-STNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRV  329 (374)
Q Consensus       251 ~~~g~-~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytIg~~~  329 (374)
T Consensus        73 ~~~~g~~t~tg~AL~~a~~~~f~~~~----g~R~r~~v~kvlvviTdG~s~-----d~~~~~a~~lr~~gV~i~aVGvg~  143 (165)
T cd01481          73 RLRGGSQLNTGSALDYVVKNLFTKSA----GSRIEEGVPQFLVLITGGKSQ-----DDVERPAVALKRAGIVPFAIGARN  143 (165)
T ss_pred             HCCCCCCEEHHHHHHHHHHHHCCCCC----CCCCCCCCCEEEEEEECCCCC-----CHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             04589843699999999997167567----887557998699998489885-----378999999998897899996897


Q ss_pred             CCCHHHHHHHCC-CCCEEEECC
Q ss_conf             222788998238-981798389
Q gi|254780934|r  330 IRSHEFLRACAS-PNSFYLVEN  350 (374)
Q Consensus       330 ~~~~~~L~~~As-~~~~~~a~~  350 (374)
T Consensus       144 -~~~~eL~~IAs~p~~vf~~~~  164 (165)
T cd01481         144 -ADLAELQQIAFDPSFVFQVSD  164 (165)
T ss_pred             -CCHHHHHHHHCCCCCEEECCC
T ss_conf             -999999998589877697389