HHsearch results for GI: 254780934 and protein with PDBid: 1jey_B
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=99.03 E-value=2.9e-08 Score=66.49 Aligned_cols=147 Identities=15% Similarity=0.028 Sum_probs=102.9
Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCC--------------EEEEEC
Q ss_conf 724999965786451131353137999999887632210023665673489999826850--------------561020
Q gi|254780934|r 171 RLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKI--------------EEFFLL 236 (374)
Q Consensus 171 ~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 236 (374)
.-.++||||.|+||....++...+++.+++++..++...-... ...++|++-|++.. ....++
T Consensus 7 Keaiv~~iDvs~sM~~~~~~~~s~~~~a~~~~~~~~~~ki~~~---~~D~vglvlfgt~~t~N~l~~~~~~~~i~v~~~l 83 (565)
T 1jey_B 7 KAAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAE---NKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHL 83 (565)
T ss_dssp CEEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTT---CCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEE
T ss_pred CCEEEEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCC---CCCEEEEEEEECCCCCCCCCCCCCCCCEEEEECC
T ss_conf 8519999989867767688999979999999999999873389---9987999998057888755544577755997458
Q ss_pred CC-CHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 47-86899999860133687744420367677643222333310257886564279998068778888806899999999
Q gi|254780934|r 237 EW-GVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEA 315 (374)
Q Consensus 237 t~-~~~~~~~~i~~l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~ 315 (374)
.. +...++...+.+.+.+..++...++..+.+++..... .....++.|||+|||.++... .....+.+.+
T Consensus 84 ~~~~~~~l~~l~~~~~~~~~~~d~~~aL~va~~~l~~~~~-------~~k~~~~~Ivl~Td~~~p~~~--~~~~~i~~~l 154 (565)
T 1jey_B 84 MLPDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETI-------GKKFEKRHIEIFTDLSSRFSK--SQLDIIIHSL 154 (565)
T ss_dssp ECCCHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSS-------SSCCSEEEEEEECCCCSCCCC--TTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH-------CCCCCCEEEEEEECCCCCCCH--HHHHHHHHHH
T ss_conf 8999999999986536887787879999999999998750-------255562489999279988687--8999999999
Q ss_pred HHCCCEEEEEEECC
Q ss_conf 97898799999248
Q gi|254780934|r 316 KKRGAIVYAIGIRV 329 (374)
Q Consensus 316 k~~gi~IytIg~~~ 329 (374)
++.+|.+..|++..
T Consensus 155 ~~~~i~L~vi~~~~ 168 (565)
T 1jey_B 155 KKCDISLQFFLPFS 168 (565)
T ss_dssp HHTTEEEEEEESSC
T ss_pred HHCCCEEEEEECCC
T ss_conf 86596699970366