HHsearch results for GI: 254780934 and protein with PDBid: 1mf7_A
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 1n9z_A 1bhq_1 1bho_1 1idn_1
Probab=99.86 E-value=1.3e-20 Score=140.13 Aligned_cols=180 Identities=19% Similarity=0.278 Sum_probs=140.6
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECCC--CHHHHHHH
Q ss_conf 7872499996578645113135313799999988763221002366567348999982685056102047--86899999
Q gi|254780934|r 169 DARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEW--GVSHLQRK 246 (374)
Q Consensus 169 ~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~~~ 246 (374)
..++||+||+|.|+||... .++.+|+.+..+++.+.. ..+|++++.|++.+....+++. +...+...
T Consensus 3 ~~~~DivfvlD~S~s~~~~------~f~~~k~~i~~~i~~l~~-----~~~rvgvv~f~~~~~~~~~l~~~~~~~~~~~~ 71 (194)
T 1mf7_A 3 QEDSDIAFLIDGSGSIIPH------DFRRMKEFVSTVMEQLKK-----SKTLFSLMQYSEEFRIHFTFKEFQNNPNPRSL 71 (194)
T ss_dssp CCCEEEEEEEECCTTSCHH------HHHHHHHHHHHHHHHHCC-----TTEEEEEEEESSSEEEEECHHHHHHSCCHHHH
T ss_pred CCCEEEEEEEECCCCCCHH------HHHHHHHHHHHHHHHCCC-----CCCEEEEEEEEEEEEEEECCCCCCCHHHHHHH
T ss_conf 9871799999598998879------999999999999997198-----88089999965403775114663668999987
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 86013368774442036767764322233331025788656427999806877888880689999999997898799999
Q gi|254780934|r 247 IKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIG 326 (374)
Q Consensus 247 i~~l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytIg 326 (374)
|+.++..+++|+++.++.++.+.+..... ...++.+|++||+|||..+.... .+......+|+.||+||+||
T Consensus 72 i~~l~~~~g~t~~~~al~~a~~~~~~~~~------~~~~~~~kvvvl~tDG~~~~~~~--~~~~~~~~l~~~gv~v~~Vg 143 (194)
T 1mf7_A 72 VKPITQLLGRTHTATGIRKVVRELFNITN------GARKNAFKILVVITDGEKFGDPL--GYEDVIPEADREGVIRYVIG 143 (194)
T ss_dssp HTTCCCCCSCBCHHHHHHHHHHTTTSGGG------TCCTTSEEEEEEEESSCCBSCSS--CGGGTHHHHHHTTEEEEEEE
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHC------CCCCCCCEEEEEEECCCCCCCHH--HHHHHHHHHHHCCCEEEEEE
T ss_conf 64134236986699999999998741432------67677664999994788789804--49999999997799999999
Q ss_pred ECCCC----CHHHHHHHCCC---CCEEEECCHHHHHHHHHHHHHHHHE
Q ss_conf 24822----27889982389---8179838989999999999984200
Q gi|254780934|r 327 IRVIR----SHEFLRACASP---NSFYLVENPHSMYDAFSHIGKDIVT 367 (374)
Q Consensus 327 ~~~~~----~~~~L~~~As~---~~~~~a~~~~~L~~~f~~I~~~i~~ 367 (374)
++... +.+.|+.+|+. .++|.+++.++|.+.++.|.++|+.
T Consensus 144 i~~~~~~~~~~~~L~~iAs~~~~~~~~~v~~~~~L~~~~~~l~~~i~~ 191 (194)
T 1mf7_A 144 VGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREKIFC 191 (194)
T ss_dssp ESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHHT
T ss_pred ECCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 788766634699999986699866089949999999999999876414