HHsearch results for GI: 254780934 and protein with PDBid: 1mf7_A

>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 1n9z_A 1bhq_1 1bho_1 1idn_1
Probab=99.86  E-value=1.3e-20  Score=140.13  Aligned_cols=180  Identities=19%  Similarity=0.278  Sum_probs=140.6

Q ss_pred             CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECCC--CHHHHHHH
Q ss_conf             7872499996578645113135313799999988763221002366567348999982685056102047--86899999
Q gi|254780934|r  169 DARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEW--GVSHLQRK  246 (374)
Q Consensus       169 ~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~~~  246 (374)
                      ..++||+||+|.|+||...      .++.+|+.+..+++.+..     ..+|++++.|++.+....+++.  +...+...
T Consensus         3 ~~~~DivfvlD~S~s~~~~------~f~~~k~~i~~~i~~l~~-----~~~rvgvv~f~~~~~~~~~l~~~~~~~~~~~~   71 (194)
T 1mf7_A            3 QEDSDIAFLIDGSGSIIPH------DFRRMKEFVSTVMEQLKK-----SKTLFSLMQYSEEFRIHFTFKEFQNNPNPRSL   71 (194)
T ss_dssp             CCCEEEEEEEECCTTSCHH------HHHHHHHHHHHHHHHHCC-----TTEEEEEEEESSSEEEEECHHHHHHSCCHHHH
T ss_pred             CCCEEEEEEEECCCCCCHH------HHHHHHHHHHHHHHHCCC-----CCCEEEEEEEEEEEEEEECCCCCCCHHHHHHH
T ss_conf             9871799999598998879------999999999999997198-----88089999965403775114663668999987


Q ss_pred             HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             86013368774442036767764322233331025788656427999806877888880689999999997898799999
Q gi|254780934|r  247 IKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIG  326 (374)
Q Consensus       247 i~~l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytIg  326 (374)
                      |+.++..+++|+++.++.++.+.+.....      ...++.+|++||+|||..+....  .+......+|+.||+||+||
T Consensus        72 i~~l~~~~g~t~~~~al~~a~~~~~~~~~------~~~~~~~kvvvl~tDG~~~~~~~--~~~~~~~~l~~~gv~v~~Vg  143 (194)
T 1mf7_A           72 VKPITQLLGRTHTATGIRKVVRELFNITN------GARKNAFKILVVITDGEKFGDPL--GYEDVIPEADREGVIRYVIG  143 (194)
T ss_dssp             HTTCCCCCSCBCHHHHHHHHHHTTTSGGG------TCCTTSEEEEEEEESSCCBSCSS--CGGGTHHHHHHTTEEEEEEE
T ss_pred             HHCCCCCCCCCHHHHHHHHHHHHHHHHHC------CCCCCCCEEEEEEECCCCCCCHH--HHHHHHHHHHHCCCEEEEEE
T ss_conf             64134236986699999999998741432------67677664999994788789804--49999999997799999999


Q ss_pred             ECCCC----CHHHHHHHCCC---CCEEEECCHHHHHHHHHHHHHHHHE
Q ss_conf             24822----27889982389---8179838989999999999984200
Q gi|254780934|r  327 IRVIR----SHEFLRACASP---NSFYLVENPHSMYDAFSHIGKDIVT  367 (374)
Q Consensus       327 ~~~~~----~~~~L~~~As~---~~~~~a~~~~~L~~~f~~I~~~i~~  367 (374)
                      ++...    +.+.|+.+|+.   .++|.+++.++|.+.++.|.++|+.
T Consensus       144 i~~~~~~~~~~~~L~~iAs~~~~~~~~~v~~~~~L~~~~~~l~~~i~~  191 (194)
T 1mf7_A          144 VGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREKIFC  191 (194)
T ss_dssp             ESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHHT
T ss_pred             ECCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf             788766634699999986699866089949999999999999876414