HHsearch results for GI: 254780934 and protein with PDBid: 1mjn_A
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=99.72 E-value=6.1e-17 Score=118.19 Aligned_cols=170 Identities=19% Similarity=0.252 Sum_probs=130.2
Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEEC--CCCHHHHHHHH
Q ss_conf 8724999965786451131353137999999887632210023665673489999826850561020--47868999998
Q gi|254780934|r 170 ARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLL--EWGVSHLQRKI 247 (374)
Q Consensus 170 ~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~~~~~~~~i 247 (374)
+++||+||+|.||||... +++.+|+++..+++.+.. ...+++++.|.........+ ..++..+...+
T Consensus 1 g~~DivfllD~S~Sm~~~------~f~~~k~~~~~~i~~l~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i 69 (179)
T 1mjn_A 1 GNVDLVFLFDGSMSLQPD------EFQKILDFMKDVMKKCSN-----TSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALL 69 (179)
T ss_dssp CCEEEEEEEECBTTCCHH------HHHHHHHHHHHHHHHTTT-----SSEEEEEEEESSSEEEEECHHHHHHHCCHHHHH
T ss_pred CCEEEEEEEECCCCCCHH------HHHHHHHHHHHHHHHHCC-----CCCEEEEEEEEECCEECCCCCCCCCHHHHHHHH
T ss_conf 976999999688999879------999999999999997375-----776699999860211113521204699999987
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 60133687744420367677643222333310257886564279998068778888806899999999978987999992
Q gi|254780934|r 248 KYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGI 327 (374)
Q Consensus 248 ~~l~~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytIg~ 327 (374)
+.+...+++|+++.++.++...+...... ..++.+|++||+|||+++.+... .+..++.++.+++
T Consensus 70 ~~~~~~~g~~~~~~al~~a~~~~~~~~~~------~r~~~~k~ivllTDG~~~~~~~~---------~~~~~~~~~~~~i 134 (179)
T 1mjn_A 70 KHVKHMLLLTNTFGAINYVATEVFREELG------ARPDATKVLIIITDGEATDSGNI---------DAAKDIIRYIIGI 134 (179)
T ss_dssp TTCCCCCBCCCHHHHHHHHHHHTSSGGGT------CCTTSEEEEEEEESSCCSSCSCC---------GGGTTSEEEEEEE
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHC------CCCCCCEEEEEECCCCCCCCHHH---------HHHHCCEEEEEEE
T ss_conf 51255789832788999999998545306------89987148999807998860689---------9982986889999
Q ss_pred CCC----CCHHHHHHHCCC---CCEEEECCHHHHHHHHHHHHHHH
Q ss_conf 482----227889982389---81798389899999999999842
Q gi|254780934|r 328 RVI----RSHEFLRACASP---NSFYLVENPHSMYDAFSHIGKDI 365 (374)
Q Consensus 328 ~~~----~~~~~L~~~As~---~~~~~a~~~~~L~~~f~~I~~~i 365 (374)
+.. .+.+.|+.+|+. .++|.+++.++|.+.+++|.++|
T Consensus 135 ~~~~~~~~~~~~L~~ias~~~~~~~~~~~~~~~L~~~~~~l~~~I 179 (179)
T 1mjn_A 135 GKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLCTELQKKI 179 (179)
T ss_dssp SGGGCSHHHHHTTGGGSCSCHHHHEEEESSGGGSCCHHHHHHHHC
T ss_pred EECCCCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf 946886017999999857998633998799999999999997249