HHsearch results for GI: 254780934 and protein with PDBid: 1pt6_A
>1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=99.87 E-value=7e-21 Score=141.62 Aligned_cols=180 Identities=21% Similarity=0.286 Sum_probs=141.4
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECC--CCHHHHHHH
Q ss_conf 787249999657864511313531379999998876322100236656734899998268505610204--786899999
Q gi|254780934|r 169 DARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLE--WGVSHLQRK 246 (374)
Q Consensus 169 ~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t--~~~~~~~~~ 246 (374)
..++||+||+|.|+||.. ++.+|+.+..+++.+... ....|++++.|+..+....+++ .++..+...
T Consensus 5 ~~~~DivfvlD~S~S~~~--------f~~~k~f~~~~i~~~~~~---~~~~rv~vv~y~~~~~~~~~l~~~~~~~~~~~~ 73 (213)
T 1pt6_A 5 STQLDIVIVLDGSNSIYP--------WDSVTAFLNDLLKRMDIG---PKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVA 73 (213)
T ss_dssp --CEEEEEEEECCTTCCC--------HHHHHHHHHHHHTTSCBS---TTSBEEEEEEESSSEEEEECTTTCSSHHHHHHH
T ss_pred CCCEEEEEEEECCCCCCC--------HHHHHHHHHHHHHHHCCC---CCCCEEEEEEEEEEEEEEECCCCCCCHHHHHHH
T ss_conf 984489999979888878--------899999999999972448---877378899974236899776556779999999
Q ss_pred HHHCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 860133687-7444203676776432223333102578865642799980687788888068999999999789879999
Q gi|254780934|r 247 IKYLSKFGV-STNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAI 325 (374)
Q Consensus 247 i~~l~~~g~-~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~~k~~gi~IytI 325 (374)
++.+...++ +|+++.++..+...+...... ..++.+|++||+|||..+. .......++.+|+.||+||+|
T Consensus 74 i~~~~~~~g~~t~~~~al~~a~~~~~~~~~g------~R~~~~k~villTDG~~~d---~~~~~~~~~~lk~~gi~v~~V 144 (213)
T 1pt6_A 74 AKKIVQRGGRQTMTALGTDTARKEAFTEARG------ARRGVKKVMVIVTDGESHD---NHRLKKVIQDCEDENIQRFSI 144 (213)
T ss_dssp HHTCCCCCCSSCCHHHHHHHHHHTTTSGGGT------CCTTCEEEEEEEESSCCSC---SHHHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHCCCCCC------CCCCCEEEEEEEECCCCCC---CHHHHHHHHHHHHCCCEEEEE
T ss_conf 8777750784100212343444320132247------8778668999984698788---415999999999889999999
Q ss_pred EECCCCC---------HHHHHHHCCC---CCEEEECCHHHHHHHHHHHHHHHHEE
Q ss_conf 9248222---------7889982389---81798389899999999999842001
Q gi|254780934|r 326 GIRVIRS---------HEFLRACASP---NSFYLVENPHSMYDAFSHIGKDIVTK 368 (374)
Q Consensus 326 g~~~~~~---------~~~L~~~As~---~~~~~a~~~~~L~~~f~~I~~~i~~~ 368 (374)
|+|...+ .+.|+.+||. .++|.+++.++|.+++++|.+.|++.
T Consensus 145 gvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~~f~~~~~~~L~~i~~~l~~~ic~~ 199 (213)
T 1pt6_A 145 AILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKTLGERIFAL 199 (213)
T ss_dssp EECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHTC-
T ss_pred EECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf 9747655454333246999999866998540898089999999999999997246