HHsearch results for GI: 254780934 and protein with PDBid: 2nut_A
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=96.05 E-value=0.059 Score=28.93 Aligned_cols=173 Identities=13% Similarity=0.092 Sum_probs=97.2
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEE-------------
Q ss_conf 7787249999657864511313531379999998876322100236656734899998268505610-------------
Q gi|254780934|r 168 TDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFF------------- 234 (374)
Q Consensus 168 ~~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 234 (374)
...+--.+||+|.|.+. ...+.+++++...++.+. +..++|+++|+..+....
T Consensus 129 ~~~pp~~vFvID~s~~~--------~~l~~l~~sl~~~l~~lp------~~~~VglITf~~~V~~y~l~~~~~~~~~vf~ 194 (769)
T 2nut_A 129 PQMPLIFLYVVDTCMED--------EDLQALKESMQMSLSLLP------PTALVGLITFGRMVQVHELGCEGISKSYVFR 194 (769)
T ss_dssp CCCCCEEEEEEECCSCH--------HHHHHHHHHHHHHHTTSC------TTCEEEEEEESSEEEEEESSCCSSCEEEEEE
T ss_pred CCCCCEEEEEEECCCCH--------HHHHHHHHHHHHHHHHCC------CCCEEEEEEECCEEEEEECCCCCCCCCEECC
T ss_conf 99997899999887665--------789999999999997289------8655999995776999966887766320216
Q ss_pred -----------------------------------------ECCCCHHHHHHHHHHCCCCCC--------CCCCCCHHHH
Q ss_conf -----------------------------------------204786899999860133687--------7444203676
Q gi|254780934|r 235 -----------------------------------------LLEWGVSHLQRKIKYLSKFGV--------STNSTPGLKY 265 (374)
Q Consensus 235 -----------------------------------------~~t~~~~~~~~~i~~l~~~g~--------~T~~~~~~~~ 265 (374)
+.......+.+.++.|....+ ...++.++..
T Consensus 195 g~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~fl~~~~e~~~~i~~lLe~L~~~~~~~~~~~r~~r~~G~Al~~ 274 (769)
T 2nut_A 195 GTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSI 274 (769)
T ss_dssp TTSCCCSHHHHHHHC-------------------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHH
T ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 87544678776533765566544456653457886331057689999999999998540566664334775440789999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCC----------------------------CHHHHHHHHHHHH
Q ss_conf 776432223333102578865642799980687788888----------------------------0689999999997
Q gi|254780934|r 266 AYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKE----------------------------DQQSLYYCNEAKK 317 (374)
Q Consensus 266 a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~----------------------------~~~~~~~~~~~k~ 317 (374)
|...+....+ +.--.|++++.|.+|.|.- ..-...++..+..
T Consensus 275 A~~ll~~~~~----------~~GgrI~~F~sg~pt~GpG~l~~~~~~~~~rs~~di~k~~~~~~~~a~~fY~~la~~~~~ 344 (769)
T 2nut_A 275 AVGLLECTFP----------NTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAAT 344 (769)
T ss_dssp HHHHHHHHSC----------SSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC----------CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHH
T ss_conf 9999986436----------898789999479997688533143434334664454322011146078999999999997
Q ss_pred CCCEEEEEEECCC-CCHHHHHHHC--CCCCEEEECC--HHHHHHHHHHHHHH
Q ss_conf 8987999992482-2278899823--8981798389--89999999999984
Q gi|254780934|r 318 RGAIVYAIGIRVI-RSHEFLRACA--SPNSFYLVEN--PHSMYDAFSHIGKD 364 (374)
Q Consensus 318 ~gi~IytIg~~~~-~~~~~L~~~A--s~~~~~~a~~--~~~L~~~f~~I~~~ 364 (374)
.||.|....+..+ .+-..|+.++ |+|..|..++ .....+.|..+.+.
T Consensus 345 ~~isvDiF~~~~~~~~l~~m~~l~~~TGG~v~~~~~F~~~~~~~~l~~~~~~ 396 (769)
T 2nut_A 345 TGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTK 396 (769)
T ss_dssp HTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSSHHHHHHHHHTTCB
T ss_pred CCEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 7958999971575557075765776168469983798604439999999876