HHsearch results for GI: 254780934 and protein with PDBid: 2nvo_A
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- sheet, RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=98.94 E-value=3.5e-08 Score=65.99 Aligned_cols=136 Identities=13% Similarity=0.119 Sum_probs=77.5
Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH-HHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECCCCHHHHHHHHH
Q ss_conf 8724999965786451131353137999999887-632210023665673489999826850561020478689999986
Q gi|254780934|r 170 ARLDMMIVLDVSRSMESFFDSSITKIDMAIKSIN-AMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEWGVSHLQRKIK 248 (374)
Q Consensus 170 ~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~i~ 248 (374)
.+-.+++++|.||||.+...+....+.....++. .++. ... ..++.++.|++..... +++.+. .+...++
T Consensus 361 ~~~r~lv~iDvSGSM~~~~~~~~~~~~~~~~a~lla~~~-~r~------~~~~~vv~Fs~~~~~v-~l~~~~-sl~~~~~ 431 (535)
T 2nvo_A 361 ANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIA-LRT------EPDALTMGFAEQFRPL-GITPRD-TLESAMQ 431 (535)
T ss_dssp CCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHHHHH-HHH------SSEEEEEEEBSSEEEC-CCCTTC-CHHHHHH
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HCC------CCCEEEEEECCCEEEE-CCCCCC-CHHHHHH
T ss_conf 897379999765556664237875377999999999998-075------8980798427965871-788886-4999999
Q ss_pred HCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCH-HHHHHHHHHHHCCCEEEEEE
Q ss_conf 013-3687744420367677643222333310257886564279998068778888806-89999999997898799999
Q gi|254780934|r 249 YLS-KFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTKEDQ-QSLYYCNEAKKRGAIVYAIG 326 (374)
Q Consensus 249 ~l~-~~g~~T~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~-~~~~~~~~~k~~gi~IytIg 326 (374)
.+. ..+++|+.+.++.|+.+.- ...+.+|++|||+.|.+.... .......+....+.+++.|+
T Consensus 432 ~~~~~~~ggT~~~~~l~~a~~~~---------------~~~D~iIllTD~e~~~g~~~p~~al~~yr~~~~~~~klv~v~ 496 (535)
T 2nvo_A 432 KAQSVSFGGTDCAQPILWAAQER---------------LDVDTFVVYTDNETWAGQVHPTVALDQYAQKMGRAPKLIVVG 496 (535)
T ss_dssp HTCCSSBCCCCTTHHHHHHHHTT---------------CCCSEEEEEESSCCCCCSSCHHHHHHHHHHHHSCCCEEEEEE
T ss_pred HHHHCCCCCCHHHHHHHHHHHCC---------------CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 98615789966999999998565---------------458989998089977899999999999999718997189998
Q ss_pred ECC
Q ss_conf 248
Q gi|254780934|r 327 IRV 329 (374)
Q Consensus 327 ~~~ 329 (374)
+..
T Consensus 497 l~~ 499 (535)
T 2nvo_A 497 LTA 499 (535)
T ss_dssp TTC
T ss_pred ECC
T ss_conf 037