HHsearch results for GI: 254780934 and protein with PDBid: 2vdr_B

>2vdr_B Integrin beta-3; cell adhesion/immune system, alternative splicing, platelet integrin ALPHAIIBBETA3, polymorphism, glycoprotein, cell adhesion, calcium; HET: NAG MAN; 2.40A {Homo sapiens} PDB: 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=99.36  E-value=8.7e-10  Score=75.57  Aligned_cols=189  Identities=14%  Similarity=0.138  Sum_probs=125.8

Q ss_pred             EECCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCE------------
Q ss_conf             31037787249999657864511313531379999998876322100236656734899998268505------------
Q gi|254780934|r  164 VNSQTDARLDMMIVLDVSRSMESFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIE------------  231 (374)
Q Consensus       164 ~~~~~~~~~di~~VlD~SgSM~~~~~~~~~ki~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  231 (374)
                      .....+.|+|++|++|.||||...       |+.+|..+..+.+.+....   ..+|+++..|.++..            
T Consensus       104 v~~~~~yPvDL~fLmD~TgSM~dd-------I~~lk~~~~~l~~~l~~~t---~~~rlGfgsf~Dk~~~p~~~~~~~~~l  173 (461)
T 2vdr_B          104 VRQVEDYPVDIYYLMDLSYSMKDD-------LWSIQNLGTKLATQMRKLT---SNLRIGFGAFVDKPVSPYMYISPPEAL  173 (461)
T ss_dssp             EECCSCCCEEEEEEEECSGGGGGG-------HHHHHHHHHHHHHHHHHHC---TTEEEEEEEECCCSSTTTSCCCSTHHH
T ss_pred             EECCCCCCCCEEEEEECCCCHHHH-------HHHHHHHHHHHHHHHHHHC---CCCEEEEEEEEEECCCCCCCCCCHHHH
T ss_conf             751677874479999477466999-------9999999999999998528---884799999897347764444666550


Q ss_pred             ------------------EEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH-HHHHHHHCCCCCCCCCCEEEE
Q ss_conf             ------------------6102047868999998601336877444203676776432-223333102578865642799
Q gi|254780934|r  232 ------------------EFFLLEWGVSHLQRKIKYLSKFGVSTNSTPGLKYAYNQIF-DMQGMRQHCNTEDANYKKIIV  292 (374)
Q Consensus       232 ------------------~~~~~t~~~~~~~~~i~~l~~~g~~T~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~k~ii  292 (374)
                                        ...++|.+...+...++.+.+.| |-+..++...|..+.. -.....|     ..+.+|++|
T Consensus       174 ~~Pc~~~~~~c~~~f~~~~~l~lT~d~~~F~~~V~~~~~sG-ggD~PE~~~dAL~qa~vc~~~igW-----R~~a~rilv  247 (461)
T 2vdr_B          174 ENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSR-NRDAPEGGFDAIMQATVCDEKIGW-----RNDASHLLV  247 (461)
T ss_dssp             HCTTGGGTSCCCCCCSEEEEEEEESCHHHHHHHHHTCCCCC-CSBSSBCHHHHHHHHHHCHHHHTC-----CTTSEEEEE
T ss_pred             CCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCEECCC-CCCCCCCHHHHHHHHHHHHHHCCC-----CCCCEEEEE
T ss_conf             48664678776787330452468878999999875036547-986776689999999986310787-----868759999


Q ss_pred             EEECCCCCCC-----------------------------CCCHHHHHHHHHHHHCCC-EEEEEEECCCCCHHHHHHHCC-
Q ss_conf             9806877888-----------------------------880689999999997898-799999248222788998238-
Q gi|254780934|r  293 FMTDGENLST-----------------------------KEDQQSLYYCNEAKKRGA-IVYAIGIRVIRSHEFLRACAS-  341 (374)
Q Consensus       293 llTDG~~~~~-----------------------------~~~~~~~~~~~~~k~~gi-~IytIg~~~~~~~~~L~~~As-  341 (374)
                      |+||...+..                             .++....++...+++++| .||+|.-.   ..++.+..+. 
T Consensus       248 liTDA~~H~agDgkl~giv~pnDg~Chl~~~~~y~~s~~~DYPSv~ql~~~l~e~~i~pIFAVt~~---~~~~Y~~L~~~  324 (461)
T 2vdr_B          248 FTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTEN---VVNLYQNYSEL  324 (461)
T ss_dssp             EEESSCBCCTTGGGGGTCCSCCCCCCCCCTTSBCTTTTTSCCCCHHHHHHHHHHTTCEEEEEEEGG---GHHHHHHHHTT
T ss_pred             EECCCCCCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCC---CHHHHHHHHHH
T ss_conf             989788433687544104438876315379887665555778999999999986496799996553---22268999974


Q ss_pred             -CCCE--EEECCHHHHHHHHHHHHHHHHEEEEE
Q ss_conf             -9817--98389899999999999842001666
Q gi|254780934|r  342 -PNSF--YLVENPHSMYDAFSHIGKDIVTKRIW  371 (374)
Q Consensus       342 -~~~~--~~a~~~~~L~~~f~~I~~~i~~~~~~  371 (374)
                       ++..  -..++...+.+..++--++|.+.-.+
T Consensus       325 i~~s~vg~L~~dSsNiv~LI~~aY~~i~s~v~l  357 (461)
T 2vdr_B          325 IPGTTVGVLSMDSSNVLQLIVDAYGKIRSKVEL  357 (461)
T ss_dssp             STTCEEEEESSCCHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHHHHCEEEE
T ss_conf             687536774477376999999999876307999