HHsearch alignment for GI: 254780935 and conserved domain: PRK10672

>PRK10672 rare lipoprotein A; Provisional.
Probab=100.00  E-value=0  Score=386.90  Aligned_cols=246  Identities=25%  Similarity=0.340  Sum_probs=182.2

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCEEECCEEEEEC-CCCCC
Q ss_conf             9999999999853135877665443233777666766---5421135664766777303579869824889625-78782
Q gi|254780935|r   11 KGSVVCVVVLGMSSCFFSSTYKDDKLEYFPESMYGVT---ASDRIVSGKRVPRGGGRYFLGKPYQIMGRWYVPR-QYTAY   86 (276)
Q Consensus        11 k~si~~i~~l~lssCs~~~~~~~~~~~~~p~~~~~~~---~s~~~~~~~~~p~~~~~y~vg~PY~v~Gk~Y~P~-~~~~y   86 (276)
T Consensus         4 ~wl~~~~~~~ll~~c~~~~~~~~~~~-~p~~~~~~~p~~ei~~a~pr~ep~~~~~-----n~~y~~~g~~y~~~~~~~~~   77 (369)
T PRK10672          4 QWLGICIAAGLLAACTSDDGQQQTVS-QPQPAVCNGPTVEISGAEPRYEPLNPTA-----NQDYQRDGKSYKIVQDPSNF   77 (369)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCEECCEEEEECCCCCCC
T ss_conf             35899999999865258864556667-8987678876122699985767877678-----99928888886767688887


Q ss_pred             EEEEEEEEECCCCCCCCCCCCCEECCCCCEEECCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHC
Q ss_conf             46799888568416870658872246101020366899848999988998579999668888869618775889998709
Q gi|254780935|r   87 AAVGMASWYGKAFHGRLTANGEVYGTEYITAAHPTLPLPSYVRVTNMENGISLVVRVNDRGPYHSNRLIDLSNAAAKILR  166 (276)
Q Consensus        87 ~~~G~ASwYg~~f~G~~TAnGE~~~~~~lTAAH~tLPl~s~VrVTNl~nGrsvvVrVNDRGPf~~gRiIDLS~~AA~~Lg  166 (276)
T Consensus        78 ~~~g~aswyg~~~~g~~ta~ge~~d~~~~taah~tlp~ps~v~vtnl~ng~~~vvrvndRGpf~~~riidls~aaa~~lg  157 (369)
T PRK10672         78 SQAGLAAIYDAEPGSNLTASGEAFDPNQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGPGRVISLSRAAADRLN  157 (369)
T ss_pred             CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCEEECCHHHHHHHC
T ss_conf             54789877077668871678773276422211557899877999988899889999848999999966665899999728


Q ss_pred             CCCCCEEEEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCC--C------CHHH
Q ss_conf             7325818999999852867877048888762168654443012110024421000234442034777--8------5434
Q gi|254780935|r  167 VEERGVSKVHVEYLGMALLNGMDQEYLRSTVMVNSATVLPLGCQYREEIVVIPYLLTRSRTVHLNNC--D------DDSL  238 (276)
Q Consensus       167 ~~~~Gva~V~ve~lg~a~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~------~~s~  238 (276)
T Consensus       158 ~~~--~a~VrVe~I~vap----------dg~lsGpGt~gt~vakqsyAlP~Rp~l~~~~~s~~~~~a~~~~~v~pi~n~~  225 (369)
T PRK10672        158 TSN--NTKVRIDPIIVAQ----------DGSLSGPGMAGTTVAKQTYALPARPDLSGGMGTPSQQDAPPQGDVLPVSNST  225 (369)
T ss_pred             CCC--CCEEEEEEEEECC----------CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             767--7505787776357----------6553566554531000012465654334455664323455555444322334


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf             211100000013455323775667610013686644
Q gi|254780935|r  239 QKQREISLRERKKSNLIPLPNGYSPPRKMGKIPIPS  274 (276)
Q Consensus       239 ~k~~~~~~~~~~~~~~~~~p~~~ap~~~~~~~p~p~  274 (276)
T Consensus       226 l~~~d~~~ap~~~~g~l~ap~~~~~~vl~~s~P~~~  261 (369)
T PRK10672        226 LKSEDPTGAPVTSSGFLGAPTTLAPGVLEGSEPTPA  261 (369)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             466555566544554446766556544456677776