HHsearch alignment for GI: 254780935 and conserved domain: TIGR00413
>TIGR00413 rlpA rare lipoprotein A; InterPro: IPR012997 This is a domain found in some bacterial lipoproteins. The function of rare lipoprotein A (RlpA) is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli . This entry contains a conserved region in the middle of RlpA..
Probab=100.00 E-value=0 Score=335.34 Aligned_cols=95 Identities=53% Similarity=0.903 Sum_probs=93.8
Q ss_pred EEEEEECCCCCCCCCCCCCEECCCCCEEECCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHCCCC
Q ss_conf 99888568416870658872246101020366899848999988998579999668888869618775889998709732
Q gi|254780935|r 90 GMASWYGKAFHGRLTANGEVYGTEYITAAHPTLPLPSYVRVTNMENGISLVVRVNDRGPYHSNRLIDLSNAAAKILRVEE 169 (276)
Q Consensus 90 G~ASwYg~~f~G~~TAnGE~~~~~~lTAAH~tLPl~s~VrVTNl~nGrsvvVrVNDRGPf~~gRiIDLS~~AA~~Lg~~~ 169 (276)
T Consensus 1 G~ASwYG~~FhGk~TAnGe~yn~~a~TAAHktLP~Nt~vkVtNl~NN~sviVRINDRGPF~~~R~IDLS~~AA~~id~~~ 80 (218)
T TIGR00413 1 GLASWYGPKFHGKKTANGEVYNMKALTAAHKTLPFNTVVKVTNLRNNRSVIVRINDRGPFSDDRIIDLSKAAAREIDLVS 80 (218)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 96333377888622467311104677688642787888999983079578998626898988731145589997628101
Q ss_pred CCEEEEEEEEEECCC
Q ss_conf 581899999985286
Q gi|254780935|r 170 RGVSKVHVEYLGMAL 184 (276)
Q Consensus 170 ~Gva~V~ve~lg~a~ 184 (276)
T Consensus 81 ~Gva~V~l~vl~~~~ 95 (218)
T TIGR00413 81 KGVAQVRLEVLEVAK 95 (218)
T ss_pred CCCCEEEEEEEECCC
T ss_conf 373105678872177