Query gi|254780935|ref|YP_003065348.1| rare lipoprotein A [Candidatus Liberibacter asiaticus str. psy62] Match_columns 276 No_of_seqs 213 out of 949 Neff 3.6 Searched_HMMs 23785 Date Tue May 31 23:17:46 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780935.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3d30_A YOAJ, expansin like pro 99.1 6.5E-10 2.7E-14 78.9 9.2 97 85-183 4-109 (208) 2 1bw3_A Barwin, basic barley SE 97.9 1.4E-05 5.8E-10 52.4 4.9 67 112-181 45-122 (125) 3 2hcz_X Beta-expansin 1A; domai 97.4 0.0019 8E-08 39.3 10.4 97 88-184 20-142 (245) 4 1wc2_A Endoglucanase; hydrolas 97.4 0.00045 1.9E-08 43.1 6.8 95 87-183 14-158 (181) 5 1n10_A PHL P I, pollen allerge 96.2 0.041 1.7E-06 31.1 9.1 96 88-183 20-141 (241) 6 3omb_A Extracellular solute-bi 54.8 2.4 0.0001 20.2 0.3 29 1-29 2-30 (535) 7 2pn0_A Prokaryotic transcripti 35.8 18 0.00078 14.8 6.6 78 104-184 41-131 (141) 8 3frn_A Flagellar protein FLGA; 29.4 24 0.00099 14.2 3.3 34 123-159 238-271 (278) 9 2k5h_A Conserved protein; stru 27.1 26 0.0011 13.9 4.8 44 99-146 55-98 (101) 10 3gqj_A Cell inhibiting factor 27.0 9.2 0.00039 16.7 -0.4 30 129-159 113-142 (261) 11 3efy_A CIF (cell cycle inhibit 26.9 25 0.001 14.0 1.8 29 129-158 45-73 (195) 12 3bmb_A Regulator of nucleoside 23.4 30 0.0013 13.5 7.7 77 106-184 40-128 (136) 13 2djm_A Glucoamylase A; beta sa 21.1 34 0.0014 13.2 2.0 18 127-144 24-41 (106) 14 2jvv_A Transcription antitermi 20.2 35 0.0015 13.1 2.9 40 133-184 128-169 (181) No 1 >3d30_A YOAJ, expansin like protein; peptidoglycan associated protein, unknown function, MLTA, bacteria autolysis, peptidoglycan-binding protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Probab=99.07 E-value=6.5e-10 Score=78.87 Aligned_cols=97 Identities=21% Similarity=0.175 Sum_probs=77.7 Q ss_pred CCEEEEEEEEECCCCCCCCCCCCCEECCCCCEEECCCCC---------CCCEEEEEECCCCCEEEEEECCCCCCCCCEEE Q ss_conf 824679988856841687065887224610102036689---------98489999889985799996688888696187 Q gi|254780935|r 85 AYAAVGMASWYGKAFHGRLTANGEVYGTEYITAAHPTLP---------LPSYVRVTNMENGISLVVRVNDRGPYHSNRLI 155 (276) Q Consensus 85 ~y~~~G~ASwYg~~f~G~~TAnGE~~~~~~lTAAH~tLP---------l~s~VrVTNl~nGrsvvVrVNDRGPf~~gRiI 155 (276) +....|.|+|||..+.|.-...+.+-......|.+..+- .|..++||+ ++++|+|+|+||+|.-....| T Consensus 4 ~~~~~G~aT~yg~~~~gGac~~~~~p~~~~~~Al~~~~~~~~~~~~~~CG~c~~v~~--~~~sv~v~V~D~Cp~c~~~~~ 81 (208) T 3d30_A 4 DDLHEGYATYTGSGYSGGAFLLDPIPSDMEITAINPADLNYGGVKAALAGSYLEVEG--PKGKTTVYVTDLYPEGARGAL 81 (208) T ss_dssp TCCEEEEEEECSTTSSSCTTCCCCCCTTCCEEEECHHHHTGGGCTTTTTTCEEEEEE--TTEEEEEEEEEECTTCCTTCE T ss_pred CCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECHHHHCCCCCCCCCCCCEEEEEC--CCCCEEEEEEECCCCCCCCEE T ss_conf 750788888878999886466898876766899688995878755355887899996--998699999872899989938 Q ss_pred ECCHHHHHHHCCCCCCEEEEEEEEEECC Q ss_conf 7588999870973258189999998528 Q gi|254780935|r 156 DLSNAAAKILRVEERGVSKVHVEYLGMA 183 (276) Q Consensus 156 DLS~~AA~~Lg~~~~Gva~V~ve~lg~a 183 (276) |||..|+.+|+-...|+.+|..+.+.-. T Consensus 82 DLS~~aF~~ia~~~~G~~~v~~~~V~C~ 109 (208) T 3d30_A 82 DLSPNAFRKIGNMKDGKINIKWRVVKAP 109 (208) T ss_dssp EECHHHHHHHSCGGGSSEEEEEEEECCC T ss_pred ECCHHHHHHHCCCCCCEEEEEEEEEECC T ss_conf 7799999853556887799999997289 No 2 >1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A Probab=97.87 E-value=1.4e-05 Score=52.35 Aligned_cols=67 Identities=22% Similarity=0.298 Sum_probs=52.5 Q ss_pred CCCCEEEC-CCCC-----CCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECC-HHHHHHHCCC----CCCEEEEEEEEE Q ss_conf 61010203-6689-----98489999889985799996688888696187758-8999870973----258189999998 Q gi|254780935|r 112 TEYITAAH-PTLP-----LPSYVRVTNMENGISLVVRVNDRGPYHSNRLIDLS-NAAAKILRVE----ERGVSKVHVEYL 180 (276) Q Consensus 112 ~~~lTAAH-~tLP-----l~s~VrVTNl~nGrsvvVrVNDRGPf~~gRiIDLS-~~AA~~Lg~~----~~Gva~V~ve~l 180 (276) .+.+||+- +.|| .|..++|||..||++|+|+|.|+.|-- -+||| ..|+.+|+.. ..|+..|..+.+ T Consensus 45 ~yg~tA~~gp~~~~gg~~CG~C~~Vt~~~~g~svtV~itD~Cp~~---hlDLS~~~AF~~ia~~g~g~~~G~i~V~y~~V 121 (125) T 1bw3_A 45 KYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITARIVDQCANG---GLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFV 121 (125) T ss_dssp HSCCEESCSTTCCCSGGGTTCEEEEEETTTTEEEEEEEEECCSSS---SCCSCSSSSHHHHCSSCHHHHHSEEEEEEEEE T ss_pred CCCEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCC---CCCCCCHHHHHHHCCCCCCCCCCEEEEEEEEE T ss_conf 676245037655667756223599884699987999997569998---74557587998753257654387788789995 Q ss_pred E Q ss_conf 5 Q gi|254780935|r 181 G 181 (276) Q Consensus 181 g 181 (276) . T Consensus 122 ~ 122 (125) T 1bw3_A 122 D 122 (125) T ss_dssp C T ss_pred C T ss_conf 6 No 3 >2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin like beta-sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Probab=97.41 E-value=0.0019 Score=39.26 Aligned_cols=97 Identities=24% Similarity=0.201 Sum_probs=68.3 Q ss_pred EEEEEEEECCCC-CCCC---CCCC--CEECC--CCCEEECC------CCCCCCEEEEEECC----CCCEEEEEECCCCCC Q ss_conf 679988856841-6870---6588--72246--10102036------68998489999889----985799996688888 Q gi|254780935|r 88 AVGMASWYGKAF-HGRL---TANG--EVYGT--EYITAAHP------TLPLPSYVRVTNME----NGISLVVRVNDRGPY 149 (276) Q Consensus 88 ~~G~ASwYg~~f-~G~~---TAnG--E~~~~--~~lTAAH~------tLPl~s~VrVTNl~----nGrsvvVrVNDRGPf 149 (276) ..|.|+|||..- .|-. -|.| +.+.. ..++||.. ..-.|...+|++.+ .+++++|+|.|..|. T Consensus 20 ~~~~aT~Yg~~~g~gt~~~~GaCgyg~l~~~~~~~~~aAls~~~f~~g~~CG~Cyev~c~~~~~c~~~~v~V~Vtd~c~~ 99 (245) T 2hcz_X 20 LTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYE 99 (245) T ss_dssp EEEEEEECSCTTSCSSTTSCCTTCCCCTTSTTTTTCEEEECHHHHGGGTSTTCEEEEECCSSSSBCSSCEEEEEEEECCC T ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCCC T ss_conf 41488896898888678877027888766578875788809889078887766879886899743699879999866789 Q ss_pred CCC-EEEECCHHHHHHHCC-------CCCCEEEEEEEEEECCC Q ss_conf 696-187758899987097-------32581899999985286 Q gi|254780935|r 150 HSN-RLIDLSNAAAKILRV-------EERGVSKVHVEYLGMAL 184 (276) Q Consensus 150 ~~g-RiIDLS~~AA~~Lg~-------~~~Gva~V~ve~lg~a~ 184 (276) -.+ ..+|||..|+.+|.- ...|+..|+.+.+.-.. T Consensus 100 ~~~~~hfDLs~~AF~~ia~~~~~~~~~~~G~v~i~yrrV~C~~ 142 (245) T 2hcz_X 100 PIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKY 142 (245) T ss_dssp TTSSSEEEECHHHHHHTBCTTCHHHHTTTCCEEEEEEEECCCC T ss_pred CCCCCCEECCHHHHHHHCCCCCCCHHHCCCEEEEEEEEEECCC T ss_conf 9987444258779865215553211112865767778972344 No 4 >1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Probab=97.37 E-value=0.00045 Score=43.08 Aligned_cols=95 Identities=15% Similarity=0.186 Sum_probs=65.2 Q ss_pred EEEEEEEEECCCCCCCCCCCCC-----EEC--CCCCEEECCC------------CCCCCEEEEE-----------ECCCC Q ss_conf 4679988856841687065887-----224--6101020366------------8998489999-----------88998 Q gi|254780935|r 87 AAVGMASWYGKAFHGRLTANGE-----VYG--TEYITAAHPT------------LPLPSYVRVT-----------NMENG 136 (276) Q Consensus 87 ~~~G~ASwYg~~f~G~~TAnGE-----~~~--~~~lTAAH~t------------LPl~s~VrVT-----------Nl~nG 136 (276) .....|+||++...|. ---|. .|. ...+|||-.+ .-.|.-.+|+ ....| T Consensus 14 ~~~A~~T~Yg~~~~GA-CGyg~~~~~~~~~~g~G~~tAA~S~~lf~~~~~~~~G~~CG~Cyev~C~~~~~~~~~~~~~~g 92 (181) T 1wc2_A 14 KSCASTTNYHDSHKGA-CGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQHCGQCIKLTTTGGYVPGQGGPVREG 92 (181) T ss_dssp EEEEEEEEECCCBCTT-TTCSCSSSSBCCSSGGGSCEEEEEHHHHCTTCCSSSCTTTTCEEEEEEEEEECTTSCCCCCTT T ss_pred CCCCEEEEECCCCCCC-CCCCCCCCCCCCCCCCCCEEEECCHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC T ss_conf 4554056606999976-777647787654436642677538777556875434655666499997899877778877789 Q ss_pred CEEEEEECCCCCCCC--------C------------EEEECCHHHHHHHCCCCCCEEEEEEEEEECC Q ss_conf 579999668888869--------6------------1877588999870973258189999998528 Q gi|254780935|r 137 ISLVVRVNDRGPYHS--------N------------RLIDLSNAAAKILRVEERGVSKVHVEYLGMA 183 (276) Q Consensus 137 rsvvVrVNDRGPf~~--------g------------RiIDLS~~AA~~Lg~~~~Gva~V~ve~lg~a 183 (276) +||+|+|+|..|-.. . ..+|||. |+.+|.-.+.|+..|..+.+.-. T Consensus 93 ~sV~VtiTd~CP~~~~n~~WCn~p~~~~~~n~~G~~~HFDLs~-af~~Ia~~~~G~v~V~yrrV~C~ 158 (181) T 1wc2_A 93 LSKTFMITNLCPNIYPNQDWCNQGSQYGGHNKYGYELHLDLEN-GRSQVTGMGWNNPETTWEVVNCD 158 (181) T ss_dssp CEEEEEEEEEECSSTTSTTTSCCSSSSSCCCTTSCSEEEEEEC-TTSTTGGGTCSSEEEEEEEECHH T ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHCCCCCEEEEEEEECCC T ss_conf 8389999745888789887448975455555778731252408-99987410389236689995589 No 5 >1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, double-PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Probab=96.16 E-value=0.041 Score=31.06 Aligned_cols=96 Identities=20% Similarity=0.223 Sum_probs=64.5 Q ss_pred EEEEEEEECCCCC-CCCC---CCC--CEECC--CCCEEECC------CCCCCCEEEEEECCC----CCEEEEEECCCCCC Q ss_conf 6799888568416-8706---588--72246--10102036------689984899998899----85799996688888 Q gi|254780935|r 88 AVGMASWYGKAFH-GRLT---ANG--EVYGT--EYITAAHP------TLPLPSYVRVTNMEN----GISLVVRVNDRGPY 149 (276) Q Consensus 88 ~~G~ASwYg~~f~-G~~T---AnG--E~~~~--~~lTAAH~------tLPl~s~VrVTNl~n----GrsvvVrVNDRGPf 149 (276) ..|.|+|||..-. |-.+ |.| +.+.. ..++||-. ..-.|.-.+|+..+. +.+++|+|.|..|. T Consensus 20 ~~a~aT~Yg~~~g~gt~~~gGaCgyg~l~~~p~g~~~aAls~~~f~~g~~CG~Cyev~c~~~~~c~~~~vtV~vtd~c~~ 99 (241) T 1n10_A 20 LDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPEACSGEPVVVHITDDNEE 99 (241) T ss_dssp EEEEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECSSTTBCSCCEEEEEEEECSS T ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHCCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCCC T ss_conf 56788797998888777886037878656578875788729889376521568648677999864699749999867898 Q ss_pred C-CCEEEECCHHHHHHHCC-------CCCCEEEEEEEEEECC Q ss_conf 6-96187758899987097-------3258189999998528 Q gi|254780935|r 150 H-SNRLIDLSNAAAKILRV-------EERGVSKVHVEYLGMA 183 (276) Q Consensus 150 ~-~gRiIDLS~~AA~~Lg~-------~~~Gva~V~ve~lg~a 183 (276) - ...-+|||..|+.++.- .+.|+..|+.+.+.-. T Consensus 100 ~~~~~~~dls~~aF~~~a~~~~~~~~~~~Giv~V~yrrV~C~ 141 (241) T 1n10_A 100 PIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCK 141 (241) T ss_dssp CSSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCC T ss_pred CCCCCCCCCCHHHHHHHCCCHHHHHHCCCCEEEEEEEEEECC T ss_conf 767755567677887532110111101486575578997447 No 6 >3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp} Probab=54.81 E-value=2.4 Score=20.22 Aligned_cols=29 Identities=17% Similarity=0.061 Sum_probs=19.0 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 94312666899999999999853135877 Q gi|254780935|r 1 MKRFSCDCLLKGSVVCVVVLGMSSCFFSS 29 (276) Q Consensus 1 ~~~~~~~~llk~si~~i~~l~lssCs~~~ 29 (276) |||..+..+.-+.++++++.+|++|+.+. T Consensus 2 Mkrr~~~~~~a~~~~~~~~~~LaaCg~~~ 30 (535) T 3omb_A 2 MRRQTMVKAGAVACAVALLGSLSACGGSK 30 (535) T ss_dssp ----------------------------- T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 77779999999999999999997008999 No 7 >2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea} Probab=35.83 E-value=18 Score=14.81 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=51.9 Q ss_pred CCCCCEECCCCCEEECCCCCCCCEEEEEECCCCCEEEEEE---CCCCCCCCCEEEECCHHHHHHHCCCCC---------C Q ss_conf 6588722461010203668998489999889985799996---688888696187758899987097325---------8 Q gi|254780935|r 104 TANGEVYGTEYITAAHPTLPLPSYVRVTNMENGISLVVRV---NDRGPYHSNRLIDLSNAAAKILRVEER---------G 171 (276) Q Consensus 104 TAnGE~~~~~~lTAAH~tLPl~s~VrVTNl~nGrsvvVrV---NDRGPf~~gRiIDLS~~AA~~Lg~~~~---------G 171 (276) -++-++.+...+. .-..-|||.|.+.++++|+...+++ .+.. ...++|=-+|+-++-.||...- | T Consensus 41 L~~A~Iv~~~~~~--~~~V~~Gs~V~~~~~~~~~~~~~~iV~~~ead-~~~~~IS~~SPlG~ALlG~~~Gd~v~v~~P~G 117 (141) T 2pn0_A 41 LARAEVVDPEEIP--PTVVTMNSTVRFRVESSAEEFCLTLVYPKDVD-TSGEKISILAPVGSALLGLAQGDEIEWPKPGG 117 (141) T ss_dssp HHTCEEECGGGSC--TTBCCTTCEEEEEETTTCCEEEEEEECGGGCC-SSSCEEETTSTTHHHHTTCBTTCEEEEECTTS T ss_pred HCCCEEECCCCCC--CCEEEECCEEEEEECCCCCEEEEEEECHHHCC-CCCCEEECCCHHHHHHHCCCCCCEEEEECCCC T ss_conf 7587998975589--99898587999997688338999996925706-76885632799999972899999999987999 Q ss_pred -EEEEEEEEEECCC Q ss_conf -1899999985286 Q gi|254780935|r 172 -VSKVHVEYLGMAL 184 (276) Q Consensus 172 -va~V~ve~lg~a~ 184 (276) ..+++|.-+-..| T Consensus 118 ~~~~~~I~~I~yqP 131 (141) T 2pn0_A 118 GVLRVRIVEVTYQP 131 (141) T ss_dssp SEEEEEEEEEEC-- T ss_pred CEEEEEEEEEEECC T ss_conf 88999999998688 No 8 >3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima} Probab=29.37 E-value=24 Score=14.15 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=18.5 Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCH Q ss_conf 9984899998899857999966888886961877588 Q gi|254780935|r 123 PLPSYVRVTNMENGISLVVRVNDRGPYHSNRLIDLSN 159 (276) Q Consensus 123 Pl~s~VrVTNl~nGrsvvVrVNDRGPf~~gRiIDLS~ 159 (276) -+|-.|+|.|++.||.+..+|.+-|- -|||++.. T Consensus 238 ~~Gd~I~V~N~~S~k~i~g~V~~~g~---V~Vi~~~~ 271 (278) T 3frn_A 238 YLGETVRAMNVESRKYVFGRVERGPV---LRILEVVE 271 (278) T ss_dssp CTTCEEEEEC--CCCEEEEEEETTTE---EEECC--- T ss_pred CCCCEEEEEECCCCCEEEEEEECCCE---EEEEEECC T ss_conf 98988999988999989999956996---99999446 No 9 >2k5h_A Conserved protein; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Methanothermobacterthermautotrophicus str} Probab=27.15 E-value=26 Score=13.91 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=32.1 Q ss_pred CCCCCCCCCCEECCCCCEEECCCCCCCCEEEEEECCCCCEEEEEECCC Q ss_conf 168706588722461010203668998489999889985799996688 Q gi|254780935|r 99 FHGRLTANGEVYGTEYITAAHPTLPLPSYVRVTNMENGISLVVRVNDR 146 (276) Q Consensus 99 f~G~~TAnGE~~~~~~lTAAH~tLPl~s~VrVTNl~nGrsvvVrVNDR 146 (276) ..|+.--+||.++... -..++-|+.|+|+..+...-+|-++.+. T Consensus 55 ~~G~V~v~Ge~W~A~s----~~~I~~G~~V~V~~ieG~~L~V~pi~e~ 98 (101) T 2k5h_A 55 NSGLVKVDGETWRATS----GTVLDVGEEVSVKAIEGVKLVVEKLEEQ 98 (101) T ss_dssp SCEEEEETTEEEEEEC----SSCBCTTCEEEEEEECSSSEEEEECCCC T ss_pred CEEEEEECCEEEEEEE----CCCCCCCCEEEEEEEECCEEEEEECCCC T ss_conf 8699999998999996----9966999999999989999999998746 No 10 >3gqj_A Cell inhibiting factor (CIF); protease-like, unknown function; 1.85A {Photorhabdus luminescens subsp} Probab=26.98 E-value=9.2 Score=16.67 Aligned_cols=30 Identities=30% Similarity=0.351 Sum_probs=22.3 Q ss_pred EEEECCCCCEEEEEECCCCCCCCCEEEECCH Q ss_conf 9998899857999966888886961877588 Q gi|254780935|r 129 RVTNMENGISLVVRVNDRGPYHSNRLIDLSN 159 (276) Q Consensus 129 rVTNl~nGrsvvVrVNDRGPf~~gRiIDLS~ 159 (276) +|-+|..-+.-|+||||++- -+--+||+-. T Consensus 113 ~l~~L~s~KnyV~~VNDgrL-GH~fliDiP~ 142 (261) T 3gqj_A 113 SVDQLSSAKNYVALVNDRRL-GHMFLIDIPS 142 (261) T ss_dssp HHTTCCTTSEEEEEEEETTT-TEEEEEEECC T ss_pred HHHCCCCCCCEEEEECCCCC-CEEEEEECCC T ss_conf 98434001267999737875-3138986578 No 11 >3efy_A CIF (cell cycle inhibiting factor); bacteria, virulence factor, type III secretion, E. coli, plasmid; 1.70A {Escherichia coli} Probab=26.89 E-value=25 Score=14.03 Aligned_cols=29 Identities=31% Similarity=0.462 Sum_probs=20.9 Q ss_pred EEEECCCCCEEEEEECCCCCCCCCEEEECC Q ss_conf 999889985799996688888696187758 Q gi|254780935|r 129 RVTNMENGISLVVRVNDRGPYHSNRLIDLS 158 (276) Q Consensus 129 rVTNl~nGrsvvVrVNDRGPf~~gRiIDLS 158 (276) +|-+|..-+.-|+||||++- -.--+||+- T Consensus 45 ~l~~L~s~knyV~~VNDgrL-GH~flIDiP 73 (195) T 3efy_A 45 RLSCMPECKSFVLRVNDGAL-GHAYIVDIP 73 (195) T ss_dssp HHHTCCTTSEEEEEEEETTT-TEEEEEEEC T ss_pred HHHCCCCCCCEEEEECCCCC-CEEEEEECC T ss_conf 98524010467999837874-314898667 No 12 >3bmb_A Regulator of nucleoside diphosphate kinase; RNA polymerase, elongation factor, anti-GRE factor, RNA binding protein; 1.91A {Escherichia coli} Probab=23.42 E-value=30 Score=13.48 Aligned_cols=77 Identities=18% Similarity=0.231 Sum_probs=51.0 Q ss_pred CCCEECCCCCEEECCCCCCCCEEEEEECCCCCEEEEEECC--CCCCCCCEEEECCHHHHHHHCCCCC---------CE-E Q ss_conf 8872246101020366899848999988998579999668--8888696187758899987097325---------81-8 Q gi|254780935|r 106 NGEVYGTEYITAAHPTLPLPSYVRVTNMENGISLVVRVND--RGPYHSNRLIDLSNAAAKILRVEER---------GV-S 173 (276) Q Consensus 106 nGE~~~~~~lTAAH~tLPl~s~VrVTNl~nGrsvvVrVND--RGPf~~gRiIDLS~~AA~~Lg~~~~---------Gv-a 173 (276) +-++.+...+ ..-..-|||.|++.++++|....+++.- ..-...++|=-+|+-++..||...- |. . T Consensus 40 ~A~Iv~~~~~--~~~~V~~Gs~V~~~~~~~~~~~~~~lV~~~ead~~~~~IS~~SPlG~ALlG~~~Gd~v~~~~p~G~~~ 117 (136) T 3bmb_A 40 RAQMCSPEEM--PHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVAT 117 (136) T ss_dssp TCEEECGGGC--CTTBCCTTCEEEEEETTTCCEEEEEEECGGGCCCTTTEEETTSHHHHHHTTCBTTCEEEEEETTTEEE T ss_pred CCEEECCCCC--CCCEEEECCEEEEEECCCCCEEEEEEECHHHHCCCCCEEEECCHHHHHHHCCCCCCEEEEECCCCCEE T ss_conf 7899896448--99989848799999888997799999895781466626886199999972998899999998999889 Q ss_pred EEEEEEEECCC Q ss_conf 99999985286 Q gi|254780935|r 174 KVHVEYLGMAL 184 (276) Q Consensus 174 ~V~ve~lg~a~ 184 (276) +++|.-+-+.| T Consensus 118 ~~~I~~I~yqp 128 (136) T 3bmb_A 118 HLEVLELEYQP 128 (136) T ss_dssp EEEEEEEEECT T ss_pred EEEEEEEEECC T ss_conf 99999998689 No 13 >2djm_A Glucoamylase A; beta sandwich, anti-parallel, strach binding, carbohydrate binding, sugar binding protein; NMR {Rhizopus oryzae} PDB: 2v8l_A* 2v8m_A* 2vq4_A Probab=21.07 E-value=34 Score=13.19 Aligned_cols=18 Identities=17% Similarity=0.146 Sum_probs=10.4 Q ss_pred EEEEEECCCCCEEEEEEC Q ss_conf 899998899857999966 Q gi|254780935|r 127 YVRVTNMENGISLVVRVN 144 (276) Q Consensus 127 ~VrVTNl~nGrsvvVrVN 144 (276) .|+|.||.=-|.|.||.. T Consensus 24 tV~V~NlafeK~V~VRyT 41 (106) T 2djm_A 24 KIYVKNIAYSKKVTVVYA 41 (106) T ss_dssp EEEECCSSSCEEEEEEEE T ss_pred EEEEEECCCCEEEEEEEE T ss_conf 999994787238999991 No 14 >2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G Probab=20.19 E-value=35 Score=13.08 Aligned_cols=40 Identities=38% Similarity=0.547 Sum_probs=25.1 Q ss_pred CCCCCEEEEEECCCCCCCC--CEEEECCHHHHHHHCCCCCCEEEEEEEEEECCC Q ss_conf 8998579999668888869--618775889998709732581899999985286 Q gi|254780935|r 133 MENGISLVVRVNDRGPYHS--NRLIDLSNAAAKILRVEERGVSKVHVEYLGMAL 184 (276) Q Consensus 133 l~nGrsvvVrVNDRGPf~~--gRiIDLS~~AA~~Lg~~~~Gva~V~ve~lg~a~ 184 (276) +.-|.. |+|+| |||.+ |.|..+. .+++-+.|.|+.+|+.- T Consensus 128 ~~~Gd~--V~I~~-GPf~g~~g~v~~v~---------~~k~r~~V~l~i~Gr~~ 169 (181) T 2jvv_A 128 FEPGEM--VRVND-GPFADFNGVVEEVD---------YEKSRLKVSVSIFGRAT 169 (181) T ss_dssp CCTTEE--EEECS-STTTTEEEEEEEEE---------TTTTEEEEEEEETTEEE T ss_pred CCCCCE--EEEEC-CCCCCCEEEEEEEE---------CCCCEEEEEEEECCCCE T ss_conf 007988--99913-68999689999980---------77899999999679956 Done!