RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780935|ref|YP_003065348.1| rare lipoprotein A [Candidatus
Liberibacter asiaticus str. psy62]
         (276 letters)



>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum
           vulgare} (A:)
          Length = 125

 Score = 96.9 bits (241), Expect = 3e-21
 Identities = 16/115 (13%), Positives = 28/115 (24%), Gaps = 8/115 (6%)

Query: 69  KPYQIMGRWYVPRQYTAYAAVGMASWYGKAFHGRLTANGEVYGTEY----ITAAHPTLPL 124
              +    +Y P Q          S Y   +      +                      
Sbjct: 4   NDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAAC 63

Query: 125 PSYVRVTNMENGISLVVRVNDRGPYHSNRLIDLSNAAA-KILRVEERGVSKVHVE 178
              +RVTN   G  +  R+ D+        +DL        +     G  + H+ 
Sbjct: 64  GKCLRVTNPATGAQITARIVDQCANGG---LDLDWDTVFTKIDTNGIGYQQGHLN 115


>3d30_A YOAJ, expansin like protein; peptidoglycan associated
           protein, unknown function, MLTA, bacteria autolysis,
           peptidoglycan-binding protein; 1.90A {Bacillus subtilis}
           PDB: 2bh0_A (A:1-109)
          Length = 109

 Score = 90.9 bits (225), Expect = 2e-19
 Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 7/103 (6%)

Query: 85  AYAAVGMASWYGKAFHGRLTANGEVYGTEYITAAHPTLPLPSYV-------RVTNMENGI 137
                G A++ G  + G       +     ITA +P       V        +       
Sbjct: 4   DDLHEGYATYTGSGYSGGAFLLDPIPSDMEITAINPADLNYGGVKAALAGSYLEVEGPKG 63

Query: 138 SLVVRVNDRGPYHSNRLIDLSNAAAKILRVEERGVSKVHVEYL 180
              V V D  P  +   +DLS  A + +   + G   +    +
Sbjct: 64  KTTVYVTDLYPEGARGALDLSPNAFRKIGNMKDGKINIKWRVV 106


>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A
           {Homo sapiens} PDB: 1st6_A (A:602-717)
          Length = 116

 Score = 27.1 bits (60), Expect = 2.7
 Identities = 6/28 (21%), Positives = 11/28 (39%)

Query: 150 HSNRLIDLSNAAAKILRVEERGVSKVHV 177
           HS +L   +  AA +    +  V  +  
Sbjct: 35  HSGKLGATAEKAAAVGTANKSTVEGIQA 62


>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination,
           helicase, hydrolase, DNA repair; HET: DNA; 3.1A
           {Escherichia coli} (C:1-82,C:185-330)
          Length = 228

 Score = 26.0 bits (57), Expect = 5.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 149 YHSNRLIDLSNAAAKILRVE 168
           YHSNRL  L      I+  E
Sbjct: 5   YHSNRLDVLEALMEFIVERE 24


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 25.5 bits (56), Expect = 7.6
 Identities = 7/32 (21%), Positives = 17/32 (53%), Gaps = 3/32 (9%)

Query: 160 AAAKILRVEERGVSKVHVEYLGMALLNGMDQE 191
           + A ++ +E   + +V V Y GM +   + ++
Sbjct: 1   SLADVMSIES--LVEV-VFYRGMTMQVAVPRD 29


>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open
           alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus
           polymyxa} (A:)
          Length = 179

 Score = 25.5 bits (55), Expect = 8.4
 Identities = 14/129 (10%), Positives = 36/129 (27%), Gaps = 17/129 (13%)

Query: 77  WYVPRQYTAYAAVGMASWYGKAFHGRLTANGEVYGTEYITAAHPTLPLPSYVRVTNMENG 136
            ++  +     A  + +    + H   + +    GTE       +    +      M   
Sbjct: 57  TFLELKQRVKVAENLKANVFVSIHANSSGSSASNGTETYYQRSASKAFANV-----MHKY 111

Query: 137 ISLVVRVNDRGPYHSNRLIDLSNAAAKILRVE----------ERGVSKVHVEYLGMALLN 186
            +    + DRG  + N    +       + +E               +     +   + +
Sbjct: 112 FAPATGLTDRGIRYGN-FHVIRETTMPAVLLEVGYLSNAKEEATLFDEDFQNRVAQGIAD 170

Query: 187 GMDQEYLRS 195
           G+ + YL  
Sbjct: 171 GITE-YLDV 178


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.321    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0459    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,209,794
Number of extensions: 100237
Number of successful extensions: 200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 8
Length of query: 276
Length of database: 4,956,049
Length adjustment: 87
Effective length of query: 189
Effective length of database: 2,015,014
Effective search space: 380837646
Effective search space used: 380837646
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.2 bits)