BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780935|ref|YP_003065348.1| rare lipoprotein A [Candidatus Liberibacter asiaticus str. psy62] (276 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780935|ref|YP_003065348.1| rare lipoprotein A [Candidatus Liberibacter asiaticus str. psy62] Length = 276 Score = 571 bits (1472), Expect = e-165, Method: Compositional matrix adjust. Identities = 276/276 (100%), Positives = 276/276 (100%) Query: 1 MKRFSCDCLLKGSVVCVVVLGMSSCFFSSTYKDDKLEYFPESMYGVTASDRIVSGKRVPR 60 MKRFSCDCLLKGSVVCVVVLGMSSCFFSSTYKDDKLEYFPESMYGVTASDRIVSGKRVPR Sbjct: 1 MKRFSCDCLLKGSVVCVVVLGMSSCFFSSTYKDDKLEYFPESMYGVTASDRIVSGKRVPR 60 Query: 61 GGGRYFLGKPYQIMGRWYVPRQYTAYAAVGMASWYGKAFHGRLTANGEVYGTEYITAAHP 120 GGGRYFLGKPYQIMGRWYVPRQYTAYAAVGMASWYGKAFHGRLTANGEVYGTEYITAAHP Sbjct: 61 GGGRYFLGKPYQIMGRWYVPRQYTAYAAVGMASWYGKAFHGRLTANGEVYGTEYITAAHP 120 Query: 121 TLPLPSYVRVTNMENGISLVVRVNDRGPYHSNRLIDLSNAAAKILRVEERGVSKVHVEYL 180 TLPLPSYVRVTNMENGISLVVRVNDRGPYHSNRLIDLSNAAAKILRVEERGVSKVHVEYL Sbjct: 121 TLPLPSYVRVTNMENGISLVVRVNDRGPYHSNRLIDLSNAAAKILRVEERGVSKVHVEYL 180 Query: 181 GMALLNGMDQEYLRSTVMVNSATVLPLGCQYREEIVVIPYLLTRSRTVHLNNCDDDSLQK 240 GMALLNGMDQEYLRSTVMVNSATVLPLGCQYREEIVVIPYLLTRSRTVHLNNCDDDSLQK Sbjct: 181 GMALLNGMDQEYLRSTVMVNSATVLPLGCQYREEIVVIPYLLTRSRTVHLNNCDDDSLQK 240 Query: 241 QREISLRERKKSNLIPLPNGYSPPRKMGKIPIPSRF 276 QREISLRERKKSNLIPLPNGYSPPRKMGKIPIPSRF Sbjct: 241 QREISLRERKKSNLIPLPNGYSPPRKMGKIPIPSRF 276 >gi|254780328|ref|YP_003064741.1| UDP-glucose 4-epimerase [Candidatus Liberibacter asiaticus str. psy62] Length = 333 Score = 23.9 bits (50), Expect = 3.1, Method: Compositional matrix adjust. Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 10/64 (15%) Query: 73 IMGRWYVPRQYTAYAAVGMASWYGKAFHGRLTANGEVYGTEYITAAHPTLPLPSYVRVTN 132 I+G W+ P + A+ A Y +F +V+G +Y A L Y+ V + Sbjct: 181 IIGEWHNPETHVIPLAIKTAMGYQNSF--------KVFGQDY--ATRDGTCLRDYIHVLD 230 Query: 133 MENG 136 + N Sbjct: 231 LANA 234 >gi|254780137|ref|YP_003064550.1| malic enzyme [Candidatus Liberibacter asiaticus str. psy62] Length = 779 Score = 23.5 bits (49), Expect = 4.3, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 23/45 (51%) Query: 101 GRLTANGEVYGTEYITAAHPTLPLPSYVRVTNMENGISLVVRVND 145 + NG GT + AA P +PS V V + + ++LV+ N+ Sbjct: 727 AKSVTNGLHIGTLLLGAALPVHIVPSSVSVREIIDMVALVMASNN 771 >gi|255764468|ref|YP_003064806.2| permease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 361 Score = 22.3 bits (46), Expect = 9.3, Method: Compositional matrix adjust. Identities = 11/42 (26%), Positives = 20/42 (47%) Query: 106 NGEVYGTEYITAAHPTLPLPSYVRVTNMENGISLVVRVNDRG 147 +GEV+ I+ + SY T N ++V++ ND+ Sbjct: 205 DGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246 >gi|254780948|ref|YP_003065361.1| DNA repair protein RecO [Candidatus Liberibacter asiaticus str. psy62] Length = 240 Score = 22.3 bits (46), Expect = 9.7, Method: Compositional matrix adjust. Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Query: 180 LGMALLNGMDQEYLRSTVMVNSATVLPLGCQYREEIVVIPYLLTRSRTVHLNNCDDDSLQ 239 L ++ G+ Q+ L + A +G Y E+++V+P L + D DSL+ Sbjct: 148 LTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEE----QTIDADSLK 203 Query: 240 KQREIS 245 +++ Sbjct: 204 SAFQLT 209 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.137 0.415 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 175,949 Number of Sequences: 1233 Number of extensions: 6930 Number of successful extensions: 13 Number of sequences better than 100.0: 5 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 5 length of query: 276 length of database: 328,796 effective HSP length: 73 effective length of query: 203 effective length of database: 238,787 effective search space: 48473761 effective search space used: 48473761 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 38 (19.2 bits)