BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780935|ref|YP_003065348.1| rare lipoprotein A [Candidatus
Liberibacter asiaticus str. psy62]
         (276 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780935|ref|YP_003065348.1| rare lipoprotein A [Candidatus Liberibacter asiaticus str. psy62]
          Length = 276

 Score =  571 bits (1472), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 276/276 (100%), Positives = 276/276 (100%)

Query: 1   MKRFSCDCLLKGSVVCVVVLGMSSCFFSSTYKDDKLEYFPESMYGVTASDRIVSGKRVPR 60
           MKRFSCDCLLKGSVVCVVVLGMSSCFFSSTYKDDKLEYFPESMYGVTASDRIVSGKRVPR
Sbjct: 1   MKRFSCDCLLKGSVVCVVVLGMSSCFFSSTYKDDKLEYFPESMYGVTASDRIVSGKRVPR 60

Query: 61  GGGRYFLGKPYQIMGRWYVPRQYTAYAAVGMASWYGKAFHGRLTANGEVYGTEYITAAHP 120
           GGGRYFLGKPYQIMGRWYVPRQYTAYAAVGMASWYGKAFHGRLTANGEVYGTEYITAAHP
Sbjct: 61  GGGRYFLGKPYQIMGRWYVPRQYTAYAAVGMASWYGKAFHGRLTANGEVYGTEYITAAHP 120

Query: 121 TLPLPSYVRVTNMENGISLVVRVNDRGPYHSNRLIDLSNAAAKILRVEERGVSKVHVEYL 180
           TLPLPSYVRVTNMENGISLVVRVNDRGPYHSNRLIDLSNAAAKILRVEERGVSKVHVEYL
Sbjct: 121 TLPLPSYVRVTNMENGISLVVRVNDRGPYHSNRLIDLSNAAAKILRVEERGVSKVHVEYL 180

Query: 181 GMALLNGMDQEYLRSTVMVNSATVLPLGCQYREEIVVIPYLLTRSRTVHLNNCDDDSLQK 240
           GMALLNGMDQEYLRSTVMVNSATVLPLGCQYREEIVVIPYLLTRSRTVHLNNCDDDSLQK
Sbjct: 181 GMALLNGMDQEYLRSTVMVNSATVLPLGCQYREEIVVIPYLLTRSRTVHLNNCDDDSLQK 240

Query: 241 QREISLRERKKSNLIPLPNGYSPPRKMGKIPIPSRF 276
           QREISLRERKKSNLIPLPNGYSPPRKMGKIPIPSRF
Sbjct: 241 QREISLRERKKSNLIPLPNGYSPPRKMGKIPIPSRF 276


>gi|254780328|ref|YP_003064741.1| UDP-glucose 4-epimerase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 333

 Score = 23.9 bits (50), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 10/64 (15%)

Query: 73  IMGRWYVPRQYTAYAAVGMASWYGKAFHGRLTANGEVYGTEYITAAHPTLPLPSYVRVTN 132
           I+G W+ P  +    A+  A  Y  +F        +V+G +Y  A      L  Y+ V +
Sbjct: 181 IIGEWHNPETHVIPLAIKTAMGYQNSF--------KVFGQDY--ATRDGTCLRDYIHVLD 230

Query: 133 MENG 136
           + N 
Sbjct: 231 LANA 234


>gi|254780137|ref|YP_003064550.1| malic enzyme [Candidatus Liberibacter asiaticus str. psy62]
          Length = 779

 Score = 23.5 bits (49), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 101 GRLTANGEVYGTEYITAAHPTLPLPSYVRVTNMENGISLVVRVND 145
            +   NG   GT  + AA P   +PS V V  + + ++LV+  N+
Sbjct: 727 AKSVTNGLHIGTLLLGAALPVHIVPSSVSVREIIDMVALVMASNN 771


>gi|255764468|ref|YP_003064806.2| permease protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 361

 Score = 22.3 bits (46), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 106 NGEVYGTEYITAAHPTLPLPSYVRVTNMENGISLVVRVNDRG 147
           +GEV+    I+     +   SY   T   N  ++V++ ND+ 
Sbjct: 205 DGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246


>gi|254780948|ref|YP_003065361.1| DNA repair protein RecO [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 240

 Score = 22.3 bits (46), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 180 LGMALLNGMDQEYLRSTVMVNSATVLPLGCQYREEIVVIPYLLTRSRTVHLNNCDDDSLQ 239
           L   ++ G+ Q+ L  +     A    +G  Y E+++V+P  L +         D DSL+
Sbjct: 148 LTKCVVTGVTQDLLWVSPKSGGAVCRSVGLPYAEKMLVLPSFLWKEE----QTIDADSLK 203

Query: 240 KQREIS 245
              +++
Sbjct: 204 SAFQLT 209


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.137    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,949
Number of Sequences: 1233
Number of extensions: 6930
Number of successful extensions: 13
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 5
length of query: 276
length of database: 328,796
effective HSP length: 73
effective length of query: 203
effective length of database: 238,787
effective search space: 48473761
effective search space used: 48473761
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 38 (19.2 bits)