HHsearch alignment for GI: 254780936 and conserved domain: cd06167

>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=99.97  E-value=3.9e-30  Score=208.91  Aligned_cols=146  Identities=36%  Similarity=0.539  Sum_probs=128.8

Q ss_pred             CEEEEEEEHHHHHHHHHHCC-CCCCHHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf             71899980789999998508-76798999999851792999999730688731467775799988975595697534589
Q gi|254780936|r    6 EKIALFIDGANLYASSKALG-FDIDYRKLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKE   84 (182)
Q Consensus         6 ~rvaIfID~~Nl~~~~~~~~-~~~d~~~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~   84 (182)
T Consensus         1 ~r~~ifiDg~Nl~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~r~Y~~~~~~-----~~~~~~~~~L~~~g~~~~~~~~~~   75 (149)
T cd06167           1 KRVAVFIDGENLYYSLRDLGGKRFDYRKLLEFLRDGGEIVLARAYGNWTSP-----ERQRGFLDALRRLGFEPIQKPLRT   75 (149)
T ss_pred             CEEEEEECHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCC-----HHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf             929999815138899997347776899999999707977999999648884-----567899999997598479961130


Q ss_pred             ECCCCCCCCCCCCCHHHHHHHHHHHH--CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCC
Q ss_conf             53788865435653299999999942--1158899983866589999999984988999983157765470899985211
Q gi|254780936|r   85 FTENCGRKRVKSSMDVELAVDAFEQS--EGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADY  162 (182)
Q Consensus        85 ~~~~~~~~~~kk~~Dv~laiD~~~~a--~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~  162 (182)
T Consensus        76 ~------~~~kk~~Dv~la~D~~~~a~~~~~D~~vLvSgD~Df~p~v~~lr~~Gk~V~v~~~----~~~~s~~L~~~~d~  145 (149)
T cd06167          76 R------GSGKKGVDVALAIDALELAYKRRIDTIVLVSGDSDFVPLVERLRELGKRVIVVGF----EAKTSRELRKAADR  145 (149)
T ss_pred             C------CCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEC----CCCCCHHHHHHHHH
T ss_conf             4------7766642099999999996138999899995777279999999987999999974----88786999997111


Q ss_pred             CEEH
Q ss_conf             1518
Q gi|254780936|r  163 FMDL  166 (182)
Q Consensus       163 fi~l  166 (182)
T Consensus       146 fi~l  149 (149)
T cd06167         146 FIDL  149 (149)
T ss_pred             CEEC
T ss_conf             1729