HHsearch alignment for GI: 254780936 and conserved domain: cd06167
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=99.97 E-value=3.9e-30 Score=208.91 Aligned_cols=146 Identities=36% Similarity=0.539 Sum_probs=128.8
Q ss_pred CEEEEEEEHHHHHHHHHHCC-CCCCHHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf 71899980789999998508-76798999999851792999999730688731467775799988975595697534589
Q gi|254780936|r 6 EKIALFIDGANLYASSKALG-FDIDYRKLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKE 84 (182)
Q Consensus 6 ~rvaIfID~~Nl~~~~~~~~-~~~d~~~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~ 84 (182)
T Consensus 1 ~r~~ifiDg~Nl~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~r~Y~~~~~~-----~~~~~~~~~L~~~g~~~~~~~~~~ 75 (149)
T cd06167 1 KRVAVFIDGENLYYSLRDLGGKRFDYRKLLEFLRDGGEIVLARAYGNWTSP-----ERQRGFLDALRRLGFEPIQKPLRT 75 (149)
T ss_pred CEEEEEECHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCC-----HHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 929999815138899997347776899999999707977999999648884-----567899999997598479961130
Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHH--CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCC
Q ss_conf 53788865435653299999999942--1158899983866589999999984988999983157765470899985211
Q gi|254780936|r 85 FTENCGRKRVKSSMDVELAVDAFEQS--EGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADY 162 (182)
Q Consensus 85 ~~~~~~~~~~kk~~Dv~laiD~~~~a--~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~ 162 (182)
T Consensus 76 ~------~~~kk~~Dv~la~D~~~~a~~~~~D~~vLvSgD~Df~p~v~~lr~~Gk~V~v~~~----~~~~s~~L~~~~d~ 145 (149)
T cd06167 76 R------GSGKKGVDVALAIDALELAYKRRIDTIVLVSGDSDFVPLVERLRELGKRVIVVGF----EAKTSRELRKAADR 145 (149)
T ss_pred C------CCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEC----CCCCCHHHHHHHHH
T ss_conf 4------7766642099999999996138999899995777279999999987999999974----88786999997111
Q ss_pred CEEH
Q ss_conf 1518
Q gi|254780936|r 163 FMDL 166 (182)
Q Consensus 163 fi~l 166 (182)
T Consensus 146 fi~l 149 (149)
T cd06167 146 FIDL 149 (149)
T ss_pred CEEC
T ss_conf 1729