HHsearch alignment for GI: 254780936 and conserved domain: pfam01936
>pfam01936 DUF88 Protein of unknown function DUF88. This highly conserved bacterial protein has no known function. The alignment contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase (Bateman A pers. obs).
Probab=99.94 E-value=3.3e-26 Score=184.38 Aligned_cols=138 Identities=36% Similarity=0.531 Sum_probs=119.7
Q ss_pred EEEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC
Q ss_conf 18999807899999985087679899999985179299999973068873146777579998897559569753458953
Q gi|254780936|r 7 KIALFIDGANLYASSKALGFDIDYRKLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFT 86 (182)
Q Consensus 7 rvaIfID~~Nl~~~~~~~~~~~d~~~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~ 86 (182)
T Consensus 1 rvaVfiD~~N~~~~~-----~~d~~~l~~~i~~~g~v~~~~aY~~~~~~~------~~~~~~~L~~~Gi~v~~~~~~~-- 67 (140)
T pfam01936 1 RVAVFIDGENCPVPA-----GIDYRKVLEEIKSGGEVVRARAYGDWSDPK------LRKFPDALSSTGIPVQHKPLTK-- 67 (140)
T ss_pred CEEEEEECCCCCCCC-----CCCHHHHHHHHHCCCCEEEEEEEECCCCCC------HHHHHHHHHHCCCEEEEECCCC--
T ss_conf 979999626587532-----479999999998279789999994788610------4779999998697189945515--
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHH--CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCE
Q ss_conf 788865435653299999999942--115889998386658999999998498899998315776547089998521115
Q gi|254780936|r 87 ENCGRKRVKSSMDVELAVDAFEQS--EGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFM 164 (182)
Q Consensus 87 ~~~~~~~~kk~~Dv~laiD~~~~a--~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi 164 (182)
T Consensus 68 ------~~Kn~~D~~l~vD~~~~~~~~~~d~~ilvsgD~Df~~~~~~lr~~g~~v~~~~~----~~~~s~~L~~~~d~f~ 137 (140)
T pfam01936 68 ------SGKNAVDVGLAVDALELAYDNNPDTFVLVSGDGDFAPLLERLRERGKRVEVLGA----EPSTSDALINAADRFI 137 (140)
T ss_pred ------CCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEC----CCCCCHHHHHHCCEEE
T ss_conf ------876503499999999997338999899992674079999999988999999965----8878799998669249
Q ss_pred EHH
Q ss_conf 189
Q gi|254780936|r 165 DLA 167 (182)
Q Consensus 165 ~l~ 167 (182)
T Consensus 138 ~l~ 140 (140)
T pfam01936 138 DLE 140 (140)
T ss_pred ECC
T ss_conf 487