HHsearch alignment for GI: 254780936 and conserved domain: pfam02739

>pfam02739 5_3_exonuc_N 5'-3' exonuclease, N-terminal resolvase-like domain.
Probab=94.45  E-value=0.44  Score=27.20  Aligned_cols=61  Identities=20%  Similarity=0.157  Sum_probs=35.5

Q ss_pred             HHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf             999889755956975345895378886543565329999999994211588999838665899999999849889999
Q gi|254780936|r   65 PLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV  142 (182)
Q Consensus        65 ~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~  142 (182)
T Consensus        90 ~i~~~l~~~gi~~~~~~g-------------~EADDvIatla~~~~~~~~~v~I~S~DkDl~QLv~~----~~~V~~~  150 (169)
T pfam02739        90 LIKELLDALGIPVLEVPG-------------YEADDVIGTLAKKAEKEGYDVRIVSGDKDLLQLVSD----KVNVAVL  150 (169)
T ss_pred             HHHHHHHHCEEEEEEECC-------------CCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCC----CCEEEEE
T ss_conf             999998750144785248-------------531567999999998589919998899985885329----9039994