HHsearch alignment for GI: 254780936 and conserved domain: pfam02739
>pfam02739 5_3_exonuc_N 5'-3' exonuclease, N-terminal resolvase-like domain.
Probab=94.45 E-value=0.44 Score=27.20 Aligned_cols=61 Identities=20% Similarity=0.157 Sum_probs=35.5
Q ss_pred HHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 999889755956975345895378886543565329999999994211588999838665899999999849889999
Q gi|254780936|r 65 PLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 65 ~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
T Consensus 90 ~i~~~l~~~gi~~~~~~g-------------~EADDvIatla~~~~~~~~~v~I~S~DkDl~QLv~~----~~~V~~~ 150 (169)
T pfam02739 90 LIKELLDALGIPVLEVPG-------------YEADDVIGTLAKKAEKEGYDVRIVSGDKDLLQLVSD----KVNVAVL 150 (169)
T ss_pred HHHHHHHHCEEEEEEECC-------------CCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCC----CCEEEEE
T ss_conf 999998750144785248-------------531567999999998589919998899985885329----9039994