HHsearch alignment of GI: 254780936 and MMDB domain: 2qip_A_

>2qip_A (A:) Protein of unknown function VPA0982; APC85975, structural genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus rimd 2210633}
Probab=100.00  E-value=4.5e-32  Score=220.66  Aligned_cols=155  Identities=28%  Similarity=0.422  Sum_probs=138.4

Q ss_pred             CCCCEEEEEEEHHHHHHHHHH-CCCCCCHHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             788718999807899999985-0876798999999851792999999730688731467775799988975595697534
Q gi|254780936|r    3 DPREKIALFIDGANLYASSKA-LGFDIDYRKLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKV   81 (182)
Q Consensus         3 ~~~~rvaIfID~~Nl~~~~~~-~~~~~d~~~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~   81 (182)
                      ++.+|+||||||+|++++.++ .++++|+.+|++.+.+.+++.++++|++.+.+..     ...|.++|++.||+++.+|
T Consensus         7 ~~~~rvaifiDg~Nl~~~~~~~~~~~~d~~~l~~~~~~~~~i~~~~~y~~~~~~~~-----~~~~~~~l~~~g~~v~~~~   81 (165)
T 2qip_A            7 DHKEKIAILVDVQNVYYTCREAYRSNFDYNQFWYVATQEKEVVSAKAYAIASNDPK-----QRQFHHILRGVGFEVXLKP   81 (165)
T ss_dssp             CCCEEEEEEEEHHHHHHHHHHHHSSCBCHHHHHHHHTTTEEEEEEEEEECCCCCHH-----HHHHHHHHHHHTCEEEECC
T ss_pred             CCCCCEEEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCHH-----HCCHHHHHHHCCCEEEEEE
T ss_conf             87782899981653699998743767799999999970792899999705778555-----4125689884574256641


Q ss_pred             EEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEEEECCCCCCCHHHHHHHC
Q ss_conf             58953788865435653299999999942115889998386658999999998-49889999831577654708999852
Q gi|254780936|r   82 AKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQR-KVKKVTIVSTVLSDPSMASDQLRRQA  160 (182)
Q Consensus        82 ~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~-~Gk~V~v~~~~~~~~~~~S~~L~~~a  160 (182)
                      ...+..+    ..||++|+.|++||+++++++|++||||||+||+|++++||+ .|++|+++++    ++.+|++|+++|
T Consensus        82 ~~~~~~~----~~~k~~Dv~laid~~~~~~~~d~~vlvSgD~Df~p~i~~lr~~~g~~V~v~~~----~~~~s~~L~~~a  153 (165)
T 2qip_A           82 YIQRRDG----SAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFSLLVERIQQRYNKKVTVYGV----PRLTSQTLIDCA  153 (165)
T ss_dssp             CCCCSSC----CCSCCCHHHHHHHHHHHGGGCSEEEEECCCGGGHHHHHHHHHHHCCEEEEEEC----GGGSCHHHHHHS
T ss_pred             EEECCCC----CCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEEC----CCCCCHHHHHHC
T ss_conf             1551678----78872379999999976523799999978825899999999838958999978----998829999869


Q ss_pred             CCCEEHHHHH
Q ss_conf             1115189978
Q gi|254780936|r  161 DYFMDLAYLK  170 (182)
Q Consensus       161 d~fi~l~~l~  170 (182)
                      |.|++|+++.
T Consensus       154 d~~~~l~~~~  163 (165)
T 2qip_A          154 DNFVAIDDDF  163 (165)
T ss_dssp             SEEEECSGGG
T ss_pred             CEEEECCCHH
T ss_conf             9889857221