Query gi|254780936|ref|YP_003065349.1| hypothetical protein CLIBASIA_04175 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 182
No_of_seqs 108 out of 875
Neff 8.2
Searched_HMMs 33803
Date Wed Jun 1 20:33:25 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780936.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2qip_A Protein of unknown fun 100.0 4.5E-32 1.3E-36 220.7 17.4 155 3-170 7-163 (165)
2 >1tfr_A T4 RNAse H; 5U-3U exon 95.2 0.25 7.4E-06 28.3 10.5 51 67-130 113-163 (202)
3 >1exn_A 5'-exonuclease, 5'-nuc 94.1 0.44 1.3E-05 26.8 11.8 121 4-143 16-167 (210)
4 >3eaf_A ABC transporter, subst 92.5 0.79 2.3E-05 25.2 9.4 103 31-146 8-112 (181)
5 >3g1w_A Sugar ABC transporter; 90.6 1.3 3.8E-05 23.9 10.7 70 62-144 22-94 (171)
6 >2qv7_A Diacylglycerol kinase 90.2 1.4 4.1E-05 23.7 10.4 100 42-156 23-124 (140)
7 >3brs_A Periplasmic binding pr 88.1 1.9 5.7E-05 22.8 8.9 70 63-144 26-98 (156)
8 >3d02_A Putative LACI-type tra 87.9 2 5.9E-05 22.7 12.0 72 60-144 20-94 (154)
9 >2ioy_A Periplasmic sugar-bind 87.3 2.1 6.4E-05 22.5 10.6 70 62-145 19-91 (150)
10 >2dri_A D-ribose-binding prote 87.0 2.3 6.7E-05 22.3 10.4 69 62-144 19-90 (139)
11 >3jx9_A Putative phosphoheptos 86.6 0.54 1.6E-05 26.2 2.8 52 112-167 58-112 (112)
12 >1tjy_A Sugar transport protei 86.6 2.4 7E-05 22.2 10.6 72 60-144 19-93 (165)
13 >3l49_A ABC sugar (ribose) tra 86.1 2.5 7.4E-05 22.1 11.9 71 61-145 22-95 (150)
14 >3jvd_A Transcriptional regula 85.6 2.6 7.8E-05 21.9 9.0 102 32-147 7-112 (128)
15 >3brq_A HTH-type transcription 85.2 2.8 8.2E-05 21.8 10.6 71 60-144 37-109 (144)
16 >3fkj_A Putative phosphosugar 84.6 3 8.7E-05 21.6 7.7 111 30-166 27-140 (173)
17 >3l6u_A ABC-type sugar transpo 84.0 3.1 9.3E-05 21.5 11.2 105 32-148 12-120 (138)
18 >3l49_A ABC sugar (ribose) tra 83.7 3.2 9.5E-05 21.4 7.5 106 34-148 9-121 (141)
19 >3h5l_A Putative branched-chai 83.6 3.2 9.6E-05 21.4 6.5 100 32-145 14-114 (182)
20 >1jye_A Lactose operon repress 83.1 3.4 0.0001 21.2 5.9 99 34-147 9-114 (130)
21 >3gbv_A Putative LACI-family t 82.7 3.5 0.0001 21.1 7.8 106 33-147 12-118 (137)
22 >2fep_A Catabolite control pro 82.2 3.4 0.0001 21.2 5.4 103 33-147 8-117 (133)
23 >3clk_A Transcription regulato 81.9 3.8 0.00011 20.9 8.3 104 33-147 8-115 (131)
24 >1vim_A Hypothetical protein A 81.5 3.9 0.00011 20.9 5.6 99 31-165 38-139 (200)
25 >3huu_A Transcription regulato 81.3 3.9 0.00012 20.8 5.5 101 33-146 8-112 (129)
26 >2qu7_A Putative transcription 80.4 4.3 0.00013 20.6 6.7 109 32-146 7-119 (136)
27 >1nri_A Hypothetical protein H 80.2 4.3 0.00013 20.6 6.8 66 95-166 123-191 (233)
28 >2fn9_A Ribose ABC transporter 78.7 4.8 0.00014 20.3 11.0 69 62-144 20-91 (150)
29 >3hba_A Putative phosphosugar 78.6 3.3 9.7E-05 21.3 4.3 50 111-166 48-100 (106)
30 >1u0t_A Inorganic polyphosphat 78.2 5 0.00015 20.2 7.9 86 59-144 18-107 (149)
31 >2o20_A Catabolite control pro 77.9 5.1 0.00015 20.1 7.0 103 32-147 7-114 (130)
32 >1gud_A ALBP, D-allose-binding 77.6 5.2 0.00015 20.1 9.8 71 62-144 19-92 (153)
33 >2h3h_A Sugar ABC transporter, 77.4 5.2 0.00015 20.1 8.9 80 54-146 29-113 (166)
34 >1dbq_A Purine repressor; tran 76.2 5.6 0.00017 19.9 11.2 73 60-146 23-97 (157)
35 >3egc_A Putative ribose operon 76.1 5.7 0.00017 19.8 5.9 105 33-147 8-116 (132)
36 >3brs_A Periplasmic binding pr 76.1 5.7 0.00017 19.8 9.8 89 48-149 23-116 (133)
37 >2vk2_A YTFQ, ABC transporter 76.0 5.7 0.00017 19.8 9.7 70 61-144 19-91 (134)
38 >2iks_A DNA-binding transcript 76.0 5.7 0.00017 19.8 7.7 103 24-144 4-108 (163)
39 >3hcw_A Maltose operon transcr 75.6 5.9 0.00017 19.7 9.1 101 33-146 8-115 (132)
40 >3h75_A Periplasmic sugar-bind 74.5 6.3 0.00019 19.6 11.2 69 62-144 22-94 (208)
41 >3h75_A Periplasmic sugar-bind 74.4 6.3 0.00019 19.6 11.2 89 46-146 26-121 (142)
42 >1usg_A Leucine-specific bindi 74.4 6.3 0.00019 19.6 8.4 118 31-163 5-123 (150)
43 >2rgy_A Transcriptional regula 74.0 6.4 0.00019 19.5 7.0 103 32-147 8-117 (133)
44 >1j5x_A Glucosamine-6-phosphat 73.7 6.5 0.00019 19.5 5.1 50 111-166 56-108 (139)
45 >1jeo_A MJ1247, hypothetical p 73.5 4.8 0.00014 20.3 4.0 80 58-166 50-132 (180)
46 >3hs3_A Ribose operon represso 73.0 6.8 0.0002 19.4 8.7 100 33-147 7-110 (126)
47 >3eua_A Putative fructose-amin 71.8 7.3 0.00021 19.2 5.4 50 111-166 73-125 (155)
48 >3l6u_A ABC-type sugar transpo 71.1 7.5 0.00022 19.1 10.9 72 59-144 23-97 (155)
49 >3dmy_A Protein FDRA; predicte 70.9 7.6 0.00022 19.1 4.7 40 101-140 47-90 (132)
50 >1kjn_A MTH0777; hypotethical 70.5 7.7 0.00023 19.0 5.2 80 64-145 26-112 (157)
51 >2poc_A D-fructose-6-, isomera 70.3 7.8 0.00023 19.0 5.4 50 111-166 96-148 (206)
52 >2dri_A D-ribose-binding prote 69.6 8.1 0.00024 18.9 6.9 100 34-146 9-112 (132)
53 >3k4h_A Putative transcription 68.4 8.6 0.00025 18.7 6.6 102 32-146 7-115 (132)
54 >3g68_A Putative phosphosugar 68.3 6 0.00018 19.7 3.6 98 40-165 31-132 (188)
55 >3c3j_A Putative tagatose-6-ph 68.1 7.1 0.00021 19.2 3.9 64 99-166 66-132 (168)
56 >2a3n_A Putative glucosamine-f 68.1 8.7 0.00026 18.7 5.4 52 109-166 99-153 (192)
57 >3fxa_A SIS domain protein; YP 67.9 8.8 0.00026 18.7 7.0 84 59-165 56-142 (201)
58 >3hu5_A Isochorismatase family 67.8 8.8 0.00026 18.6 10.3 70 109-178 122-198 (204)
59 >2dc1_A L-aspartate dehydrogen 67.6 8.9 0.00026 18.6 4.8 67 64-142 13-80 (133)
60 >3cs3_A Sugar-binding transcri 67.2 9 0.00027 18.6 8.1 99 33-146 8-113 (130)
61 >2h3h_A Sugar ABC transporter, 67.1 9.1 0.00027 18.6 9.7 70 63-145 19-91 (147)
62 >2zj3_A Glucosamine--fructose- 66.8 9.2 0.00027 18.5 4.3 49 111-165 62-114 (159)
63 >2iks_A DNA-binding transcript 66.4 9.4 0.00028 18.5 7.8 100 33-147 8-114 (130)
64 >2aml_A SIS domain protein; 46 66.3 9.4 0.00028 18.5 7.8 108 31-166 12-123 (157)
65 >1x92_A APC5045, phosphoheptos 65.8 9.7 0.00029 18.4 6.5 93 58-166 55-164 (199)
66 >1f8y_A Nucleoside 2-deoxyribo 65.7 9.7 0.00029 18.4 10.5 124 48-172 6-142 (157)
67 >2yva_A DNAA initiator-associa 65.3 9.9 0.00029 18.3 7.1 101 59-165 52-159 (196)
68 >3knz_A Putative sugar binding 65.0 7.5 0.00022 19.1 3.5 108 30-166 5-115 (149)
69 >2rjo_A Twin-arginine transloc 64.9 10 0.0003 18.3 10.4 69 62-144 23-96 (152)
70 >1m3s_A Hypothetical protein Y 64.8 10 0.0003 18.3 5.9 101 30-166 27-130 (186)
71 >3fj1_A Putative phosphosugar 64.0 10 0.00031 18.2 5.1 98 41-165 41-141 (193)
72 >3i45_A Twin-arginine transloc 63.9 10 0.00031 18.2 7.2 110 32-159 8-120 (200)
73 >1tjy_A Sugar transport protei 63.0 11 0.00032 18.1 10.9 85 51-146 28-116 (151)
74 >1tzb_A Glucose-6-phosphate is 62.9 8.5 0.00025 18.8 3.5 79 58-166 31-112 (144)
75 >2i2w_A Phosphoheptose isomera 62.7 11 0.00033 18.0 4.6 102 59-166 75-182 (212)
76 >3dbi_A Sugar-binding transcri 62.4 11 0.00033 18.0 10.9 74 57-144 76-151 (185)
77 >3k32_A Uncharacterized protei 62.2 11 0.00033 18.0 5.5 44 31-81 20-64 (203)
78 >3ksm_A ABC-type sugar transpo 62.2 11 0.00033 18.0 10.0 102 32-147 11-117 (136)
79 >2nyv_A Pgpase, PGP, phosphogl 61.7 11 0.00034 17.9 4.9 43 99-144 67-110 (148)
80 >2bpl_A Glucosamine--fructose- 61.5 12 0.00034 17.9 5.4 92 44-166 50-148 (206)
81 >1jye_A Lactose operon repress 61.3 12 0.00034 17.9 9.0 71 61-144 78-150 (219)
82 >3i0z_A Putative tagatose-6-ph 61.2 12 0.00035 17.9 4.1 49 111-165 54-107 (119)
83 >1dbq_A Purine repressor; tran 61.1 12 0.00035 17.9 6.5 103 32-147 7-116 (132)
84 >1qpz_A PURA, protein (purine 61.1 12 0.00035 17.9 7.5 102 33-147 8-116 (132)
85 >1wde_A Probable diphthine syn 60.7 8.6 0.00025 18.7 3.2 41 102-142 73-117 (120)
86 >3kjx_A Transcriptional regula 60.7 12 0.00035 17.8 7.7 103 33-147 8-117 (132)
87 >1cbf_A Cobalt-precorrin-4 tra 60.2 12 0.00036 17.8 5.5 45 98-142 78-127 (130)
88 >3ijp_A DHPR, dihydrodipicolin 59.5 13 0.00037 17.7 4.4 56 105-162 81-136 (177)
89 >3d02_A Putative LACI-type tra 59.0 13 0.00038 17.6 8.9 89 48-146 23-116 (149)
90 >1tlt_A Putative oxidoreductas 58.8 13 0.00038 17.6 4.7 37 106-142 59-95 (184)
91 >1pjq_A CYSG, siroheme synthas 57.8 13 0.00037 17.7 3.6 48 95-142 63-115 (118)
92 >1nba_A N-carbamoylsarcosine a 57.8 13 0.0004 17.5 9.8 71 109-179 122-199 (226)
93 >2glx_A 1,5-anhydro-D-fructose 57.7 13 0.0004 17.5 5.2 35 107-141 57-91 (122)
94 >3d4o_A Dipicolinate synthase 57.6 13 0.0004 17.5 4.5 28 129-162 88-115 (149)
95 >8abp_A L-arabinose-binding pr 57.2 14 0.00041 17.4 12.0 69 61-144 19-90 (138)
96 >1jx7_A Hypothetical protein Y 57.1 11 0.00031 18.1 3.1 47 98-144 16-80 (117)
97 >3d8u_A PURR transcriptional r 55.7 14 0.00043 17.3 7.2 100 33-145 9-115 (121)
98 >2fn9_A Ribose ABC transporter 55.6 15 0.00043 17.3 10.1 92 44-147 25-120 (140)
99 >3g1w_A Sugar ABC transporter; 55.5 15 0.00043 17.3 9.4 101 33-147 8-115 (134)
100 >1jx6_A LUXP protein; protein- 55.4 15 0.00043 17.3 6.3 79 56-146 30-112 (133)
101 >1tk9_A Phosphoheptose isomera 55.1 15 0.00044 17.2 6.8 52 109-166 107-161 (188)
102 >2dt5_A AT-rich DNA-binding pr 55.1 14 0.0004 17.5 3.4 38 105-142 55-93 (111)
103 >2an1_A Putative kinase; struc 54.9 15 0.00044 17.2 5.4 72 63-143 23-94 (138)
104 >2hqb_A Transcriptional activa 54.9 15 0.00044 17.2 9.0 75 60-145 29-104 (120)
105 >3c3k_A Alanine racemase; stru 54.7 15 0.00044 17.2 7.0 101 33-147 8-115 (131)
106 >2rjo_A Twin-arginine transloc 54.3 15 0.00045 17.2 10.6 104 33-147 8-116 (135)
107 >2hsg_A Glucose-resistance amy 54.3 15 0.00045 17.1 7.9 104 32-147 8-118 (134)
108 >3dbi_A Sugar-binding transcri 53.7 16 0.00046 17.1 6.5 103 32-147 8-117 (133)
109 >3g85_A Transcriptional regula 53.7 16 0.00046 17.1 7.4 100 33-145 8-114 (134)
110 >1gud_A ALBP, D-allose-binding 53.6 16 0.00046 17.1 10.5 84 52-147 28-116 (135)
111 >1j5p_A Aspartate dehydrogenas 53.5 11 0.00031 18.1 2.7 49 110-161 58-109 (146)
112 >3e82_A Putative oxidoreductas 53.1 16 0.00047 17.0 5.3 38 105-142 60-97 (127)
113 >3lkb_A Probable branched-chai 52.3 16 0.00049 16.9 8.2 100 31-146 7-108 (172)
114 >3ctp_A Periplasmic binding pr 52.0 17 0.00049 16.9 5.7 103 32-146 7-113 (130)
115 >1va0_A Uroporphyrin-III C-met 51.5 17 0.0005 16.9 5.8 47 96-142 58-109 (120)
116 >2dgd_A 223AA long hypothetica 50.7 14 0.00042 17.4 2.9 74 63-140 15-93 (95)
117 >3gv0_A Transcriptional regula 50.1 18 0.00053 16.7 8.8 104 32-148 7-117 (132)
118 >1byk_A Protein (trehalose ope 49.6 18 0.00054 16.7 8.2 100 33-147 8-109 (125)
119 >1mio_B Nitrogenase molybdenum 49.3 18 0.00054 16.7 4.1 23 121-143 61-83 (109)
120 >2duw_A Putative COA-binding p 49.1 18 0.00055 16.6 4.0 85 64-161 30-114 (145)
121 >1lc0_A Biliverdin reductase A 48.4 19 0.00056 16.6 4.8 38 105-142 58-95 (177)
122 >3euw_A MYO-inositol dehydroge 48.1 19 0.00057 16.5 4.3 38 105-142 58-95 (125)
123 >2e4u_A Metabotropic glutamate 47.1 20 0.00059 16.4 12.2 100 32-144 7-107 (177)
124 >3cvj_A Putative phosphoheptos 46.2 20 0.0006 16.4 4.7 36 109-144 105-143 (243)
125 >2ixa_A Alpha-N-acetylgalactos 46.2 20 0.0006 16.4 4.4 31 111-141 90-120 (231)
126 >2zj3_A Glucosamine--fructose- 46.0 21 0.00061 16.3 8.0 94 44-165 61-157 (216)
127 >1req_B Methylmalonyl-COA muta 45.4 21 0.00062 16.3 9.4 116 29-165 21-143 (163)
128 >3dty_A Oxidoreductase, GFO/ID 45.4 21 0.00062 16.3 5.1 36 106-141 79-114 (226)
129 >3ip3_A Oxidoreductase, putati 45.2 21 0.00063 16.3 5.6 35 108-142 63-97 (129)
130 >2rir_A Dipicolinate synthase, 45.1 21 0.00063 16.3 4.5 29 116-144 10-38 (156)
131 >1s4d_A Uroporphyrin-III C-met 44.7 22 0.00064 16.2 5.6 45 98-142 77-126 (130)
132 >3hut_A Putative branched-chai 44.4 22 0.00064 16.2 9.9 109 32-160 6-115 (119)
133 >1qpz_A PURA, protein (purine 44.4 22 0.00065 16.2 11.1 71 62-146 19-91 (151)
134 >1b7g_O Protein (glyceraldehyd 44.1 22 0.00065 16.2 4.1 37 106-142 71-107 (176)
135 >3brq_A HTH-type transcription 43.8 22 0.00066 16.1 7.0 103 32-147 8-117 (133)
136 >8abp_A L-arabinose-binding pr 43.2 23 0.00067 16.1 8.9 104 33-146 12-124 (146)
137 >3h5t_A Transcriptional regula 42.1 24 0.0007 16.0 6.0 82 56-147 44-132 (146)
138 >1ve2_A Uroporphyrin-III C-met 41.8 24 0.00071 15.9 5.3 47 96-142 61-112 (115)
139 >3i23_A Oxidoreductase, GFO/ID 41.6 24 0.00071 15.9 4.6 37 106-142 59-95 (125)
140 >2poc_A D-fructose-6-, isomera 41.2 21 0.00063 16.2 2.6 47 110-162 62-112 (161)
141 >1dih_A Dihydrodipicolinate re 41.0 25 0.00073 15.9 4.1 55 106-162 66-120 (162)
142 >2e0n_A Precorrin-2 C20-methyl 41.0 19 0.00057 16.5 2.4 41 102-142 85-130 (133)
143 >3jy6_A Transcriptional regula 40.7 25 0.00073 15.8 8.4 100 32-147 7-113 (117)
144 >1v0j_A UDP-galactopyranose mu 40.7 25 0.00074 15.8 3.8 29 96-124 120-153 (224)
145 >2d59_A Hypothetical protein P 40.6 25 0.00074 15.8 4.8 82 64-161 39-121 (144)
146 >3bl5_A Queuosine biosynthesis 40.6 25 0.00074 15.8 6.0 43 32-79 18-61 (219)
147 >3e3m_A Transcriptional regula 40.4 25 0.00074 15.8 6.5 106 33-146 8-117 (134)
148 >2fvy_A D-galactose-binding pe 40.3 25 0.00074 15.8 11.2 67 64-144 22-92 (164)
149 >3bio_A Oxidoreductase, GFO/ID 39.8 26 0.00076 15.7 3.8 36 107-142 60-95 (158)
150 >1xx6_A Thymidine kinase; X-RA 39.5 26 0.00077 15.7 5.3 62 105-166 73-141 (147)
151 >2fvy_A D-galactose-binding pe 39.4 26 0.00077 15.7 9.9 89 47-146 31-125 (145)
152 >3k9c_A Transcriptional regula 39.0 26 0.00078 15.7 8.5 102 32-148 7-115 (130)
153 >1pea_A Amidase operon; gene r 38.8 27 0.00079 15.6 10.3 111 32-160 4-117 (179)
154 >3hn7_A UDP-N-acetylmuramate-L 38.7 2.3 6.7E-05 22.3 -2.7 30 111-140 79-108 (119)
155 >2p2s_A Putative oxidoreductas 38.6 27 0.00079 15.6 5.2 37 106-142 60-96 (127)
156 >1y81_A Conserved hypothetical 38.4 27 0.0008 15.6 5.2 82 64-161 31-113 (138)
157 >3dhx_A Methionine import ATP- 38.1 27 0.00081 15.6 5.2 33 115-147 67-100 (106)
158 >2d13_A Hypothetical protein P 37.9 27 0.00081 15.6 5.3 36 105-140 81-120 (124)
159 >3a24_A Alpha-galactosidase; g 37.4 23 0.00069 16.0 2.3 61 102-162 40-116 (182)
160 >1moq_A Glucosamine 6-phosphat 37.2 28 0.00083 15.5 7.0 95 44-166 53-151 (210)
161 >2bde_A Cytosolic IMP-GMP spec 37.1 28 0.00084 15.5 3.0 67 92-164 121-187 (211)
162 >1h6d_A Precursor form of gluc 36.4 29 0.00086 15.4 4.4 31 111-141 149-179 (210)
163 >3f4l_A Putative oxidoreductas 36.4 29 0.00086 15.4 4.5 38 105-142 58-95 (125)
164 >3kux_A Putative oxidoreductas 35.9 30 0.00087 15.4 5.1 39 104-142 59-97 (127)
165 >3egc_A Putative ribose operon 35.9 30 0.00087 15.4 8.1 70 61-145 25-96 (159)
166 >1iuk_A Hypothetical protein T 35.6 30 0.00088 15.3 2.7 85 64-161 30-114 (140)
167 >3h5i_A Response regulator/sen 35.5 30 0.00089 15.3 8.0 84 64-165 19-106 (140)
168 >1wyz_A Putative S-adenosylmet 35.4 30 0.00089 15.3 4.1 46 97-142 67-118 (120)
169 >2fp4_A Succinyl-COA ligase [G 35.3 30 0.00089 15.3 5.8 40 103-142 62-101 (130)
170 >2qbu_A Precorrin-2 methyltran 35.2 30 0.0009 15.3 6.1 44 99-142 80-128 (131)
171 >2fb6_A Conserved hypothetical 34.9 31 0.00091 15.3 6.3 34 111-144 38-79 (117)
172 >3c1a_A Putative oxidoreductas 34.4 31 0.00092 15.2 5.1 52 107-162 64-118 (170)
173 >3h5o_A Transcriptional regula 34.3 31 0.00093 15.2 8.5 103 32-147 7-116 (132)
174 >1vl2_A Argininosuccinate synt 33.9 32 0.00094 15.2 6.1 14 2-15 11-24 (183)
175 >3kke_A LACI family transcript 33.5 32 0.00096 15.1 7.0 105 32-146 7-120 (137)
176 >3dfz_A SIRC, precorrin-2 dehy 33.3 31 0.0009 15.3 2.4 33 111-143 90-122 (126)
177 >2r6f_A Excinuclease ABC subun 33.1 33 0.00097 15.1 3.6 37 96-132 109-149 (204)
178 >1xea_A Oxidoreductase, GFO/ID 33.0 33 0.00098 15.1 4.4 32 111-142 62-93 (184)
179 >2ioy_A Periplasmic sugar-bind 32.8 33 0.00098 15.0 11.0 101 34-147 9-114 (133)
180 >2i2c_A Probable inorganic pol 32.6 33 0.00099 15.0 3.5 39 112-150 35-73 (93)
181 >1bgx_T TAQ DNA polymerase; DN 32.5 18 0.00054 16.7 1.2 54 64-130 59-112 (167)
182 >1ydw_A AX110P-like protein; s 32.1 34 0.001 15.0 5.0 53 106-162 65-120 (191)
183 >3ks9_A Mglur1, metabotropic g 32.1 34 0.001 15.0 10.2 101 32-144 7-111 (190)
184 >3e9m_A Oxidoreductase, GFO/ID 32.1 34 0.001 15.0 4.9 48 110-161 65-115 (181)
185 >3ced_A Methionine import ATP- 32.0 34 0.001 15.0 4.7 29 115-143 50-80 (82)
186 >3etn_A Putative phosphosugar 31.9 34 0.001 14.9 5.4 109 30-166 44-159 (220)
187 >2dh2_A 4F2 cell-surface antig 31.7 35 0.001 14.9 3.9 64 63-143 38-102 (329)
188 >3ic5_A Putative saccharopine 31.7 35 0.001 14.9 4.2 39 105-143 62-100 (101)
189 >3gyb_A Transcriptional regula 31.6 35 0.001 14.9 9.6 100 32-147 7-113 (129)
190 >3ff4_A Uncharacterized protei 31.5 35 0.001 14.9 3.5 81 64-161 21-102 (122)
191 >2eq6_A Pyruvate dehydrogenase 31.4 35 0.001 14.9 2.9 12 68-79 101-112 (179)
192 >1r0k_A 1-deoxy-D-xylulose 5-p 31.3 35 0.001 14.9 5.4 38 105-142 84-123 (150)
193 >3i4t_A Diphthine synthase; ni 31.3 35 0.001 14.9 3.8 34 109-142 92-129 (140)
194 >3e61_A Putative transcription 30.9 36 0.0011 14.8 8.1 68 61-144 25-94 (120)
195 >3ixl_A Amdase, arylmalonate d 30.8 36 0.0011 14.8 4.3 74 63-140 15-93 (95)
196 >3ezy_A Dehydrogenase; structu 30.7 36 0.0011 14.8 6.4 33 110-142 62-94 (173)
197 >3kwp_A Predicted methyltransf 30.5 36 0.0011 14.8 4.9 44 99-142 75-123 (125)
198 >1q1o_A Cell division control 30.4 36 0.0011 14.8 4.3 28 115-142 68-95 (98)
199 >1zjj_A Hypothetical protein P 30.4 31 0.00092 15.2 2.1 50 117-174 73-129 (131)
200 >2yv1_A Succinyl-COA ligase [A 30.4 36 0.0011 14.8 5.6 39 105-143 63-101 (128)
201 >2c5s_A THII, probable thiamin 30.1 37 0.0011 14.8 4.9 143 3-162 3-158 (231)
202 >3fhl_A Putative oxidoreductas 28.8 39 0.0011 14.6 6.3 38 105-142 58-95 (126)
203 >1r8j_A KAIA; circadian clock 28.4 39 0.0012 14.6 6.1 82 64-164 23-105 (178)
204 >2bon_A Lipid kinase; DAG kina 28.3 40 0.0012 14.6 9.8 96 44-157 30-129 (165)
205 >1gnl_A HCP, hybrid cluster pr 28.2 22 0.00064 16.2 0.9 17 120-136 109-125 (127)
206 >3e61_A Putative transcription 27.5 41 0.0012 14.5 7.1 99 33-147 13-115 (131)
207 >2r9z_A Glutathione amide redu 27.4 41 0.0012 14.5 3.0 32 111-143 3-34 (189)
208 >2gz1_A Aspartate beta-semiald 27.4 31 0.00092 15.2 1.6 33 111-143 63-95 (165)
209 >1jk9_B CCS, copper chaperone 27.3 41 0.0012 14.5 2.6 32 114-145 43-74 (76)
210 >1vli_A Spore coat polysacchar 27.3 41 0.0012 14.5 5.7 75 63-162 103-179 (300)
211 >2pbq_A Molybdenum cofactor bi 27.3 41 0.0012 14.5 4.8 20 1-20 1-20 (178)
212 >3bic_A Methylmalonyl-COA muta 27.1 41 0.0012 14.4 8.1 86 63-165 38-130 (179)
213 >2r00_A Aspartate-semialdehyde 27.1 41 0.0012 14.4 2.6 34 111-144 64-97 (150)
214 >2h0a_A TTHA0807, transcriptio 26.5 42 0.0013 14.4 3.5 71 61-146 16-88 (142)
215 >1yv9_A Hydrolase, haloacid de 26.4 43 0.0013 14.4 2.6 71 99-174 75-149 (154)
216 >3e18_A Oxidoreductase; dehydr 26.4 43 0.0013 14.4 6.6 38 105-142 58-95 (125)
217 >2axq_A Saccharopine dehydroge 26.3 43 0.0013 14.4 3.8 61 97-161 73-133 (196)
218 >2qae_A Lipoamide, dihydrolipo 26.3 43 0.0013 14.3 3.0 11 70-80 103-113 (194)
219 >2orw_A Thymidine kinase; TMTK 25.9 44 0.0013 14.3 5.3 62 105-166 68-136 (142)
220 >2cuy_A Malonyl COA-[acyl carr 25.9 44 0.0013 14.3 3.1 34 112-145 33-67 (70)
221 >1v71_A Serine racemase, hypot 25.9 44 0.0013 14.3 5.6 45 102-146 81-126 (240)
222 >3ixz_A Potassium-transporting 25.3 45 0.0013 14.2 4.4 35 122-161 129-163 (187)
223 >2b34_A F35G2.2, MAR1 ribonucl 25.3 45 0.0013 14.2 8.2 155 2-179 10-174 (199)
224 >3gbv_A Putative LACI-family t 25.3 45 0.0013 14.2 11.1 48 97-144 52-102 (167)
225 >2ww8_A RRGA, cell WALL surfac 25.1 45 0.0013 14.2 2.8 60 114-173 193-260 (269)
226 >3kc2_A Uncharacterized protei 25.0 41 0.0012 14.5 1.9 56 113-175 131-190 (193)
227 >1cc8_A Protein (metallochaper 25.0 45 0.0013 14.2 3.0 31 114-144 42-72 (73)
228 >3gdo_A Uncharacterized oxidor 24.8 46 0.0014 14.2 5.6 37 106-142 59-95 (126)
229 >2ho4_A Haloacid dehalogenase- 24.7 46 0.0014 14.2 2.4 51 117-175 80-137 (140)
230 >1byr_A Protein (endonuclease) 24.7 46 0.0014 14.2 5.9 68 7-80 5-87 (155)
231 >3d8x_A Thioredoxin reductase 24.4 46 0.0014 14.1 2.4 34 109-143 7-40 (169)
232 >1vhv_A Diphthine synthase; st 24.3 47 0.0014 14.1 4.7 45 99-143 73-122 (132)
233 >1vkf_A Glycerol uptake operon 24.2 47 0.0014 14.1 3.7 30 113-142 32-62 (188)
234 >3jrn_A AT1G72930 protein; TIR 24.0 39 0.0012 14.6 1.6 68 64-143 26-102 (176)
235 >1zh8_A Oxidoreductase; TM0312 23.8 48 0.0014 14.1 6.7 34 109-142 79-112 (143)
236 >3iwl_A Copper transport prote 23.6 48 0.0014 14.0 2.9 30 114-143 37-66 (68)
237 >2pg3_A Queuosine biosynthesis 23.5 48 0.0014 14.0 5.2 14 129-142 109-122 (162)
238 >2r79_A Periplasmic binding pr 23.4 49 0.0014 14.0 2.5 28 115-142 61-88 (91)
239 >2jbv_A Choline oxidase; alcoh 23.4 47 0.0014 14.1 1.9 33 111-143 12-44 (176)
240 >1fx0_A ATP synthase alpha cha 23.3 49 0.0014 14.0 2.4 38 109-146 121-170 (277)
241 >3gjz_A Microcin immunity prot 23.3 49 0.0014 14.0 4.9 78 60-142 30-114 (142)
242 >2hjs_A USG-1 protein homolog; 23.3 38 0.0011 14.7 1.4 33 110-142 66-98 (152)
243 >3evn_A Oxidoreductase, GFO/ID 23.3 49 0.0014 14.0 5.2 34 109-142 64-97 (181)
244 >2qsw_A Methionine import ATP- 23.2 49 0.0014 14.0 3.4 29 115-143 69-98 (100)
245 >3a1c_A Probable copper-export 23.2 49 0.0015 14.0 4.9 14 66-79 49-62 (165)
246 >3cs3_A Sugar-binding transcri 23.1 49 0.0015 14.0 6.8 63 62-144 26-88 (147)
247 >1moq_A Glucosamine 6-phosphat 22.9 50 0.0015 13.9 3.7 48 111-164 61-112 (158)
248 >1y5e_A Molybdenum cofactor bi 22.8 50 0.0015 13.9 5.2 56 61-129 31-93 (169)
249 >1vjr_A 4-nitrophenylphosphata 22.7 50 0.0015 13.9 2.8 90 64-173 39-144 (145)
250 >2nu8_A Succinyl-COA ligase [A 22.7 50 0.0015 13.9 6.1 40 104-143 56-95 (122)
251 >3k4h_A Putative transcription 22.6 50 0.0015 13.9 8.4 68 62-144 31-100 (160)
252 >1uok_A Oligo-1,6-glucosidase; 22.5 51 0.0015 13.9 3.0 70 58-144 28-100 (206)
253 >2jfg_A UDP-N-acetylmuramoylal 22.5 23 0.00069 16.0 0.2 74 65-140 20-93 (103)
254 >3l8k_A Dihydrolipoyl dehydrog 22.2 51 0.0015 13.9 2.4 32 111-143 3-34 (183)
255 >2gb3_A Aspartate aminotransfe 22.1 52 0.0015 13.8 3.1 14 65-78 73-87 (173)
256 >1ebd_A E3BD, dihydrolipoamide 21.9 52 0.0015 13.8 3.5 41 115-155 136-179 (197)
257 >2ywr_A Phosphoribosylglycinam 21.8 52 0.0015 13.8 4.2 14 65-78 71-84 (216)
258 >2z6r_A Diphthine synthase; me 21.8 52 0.0015 13.8 6.0 46 98-143 62-112 (122)
259 >2a8x_A Dihydrolipoyl dehydrog 21.7 52 0.0016 13.8 3.2 12 70-81 101-112 (194)
260 >3ic9_A Dihydrolipoamide dehyd 21.7 46 0.0013 14.2 1.6 31 111-142 7-37 (195)
261 >2c82_A 1-deoxy-D-xylulose 5-p 21.6 53 0.0016 13.8 5.4 36 107-142 91-126 (151)
262 >2dkh_A 3-hydroxybenzoate hydr 21.6 52 0.0015 13.8 1.9 32 111-142 31-62 (258)
263 >3lop_A Substrate binding peri 21.5 53 0.0016 13.8 10.5 97 31-144 8-106 (162)
264 >1l1s_A Hypothetical protein M 21.5 53 0.0016 13.8 5.2 34 111-144 33-74 (113)
265 >2o4u_X Dimeric dihydrodiol de 21.5 53 0.0016 13.8 5.3 32 110-141 64-95 (184)
266 >1k92_A Argininosuccinate synt 21.3 53 0.0016 13.7 5.7 42 1-54 6-48 (183)
267 >2e18_A NH(3)-dependent NAD(+) 21.2 54 0.0016 13.7 4.6 39 111-149 21-59 (129)
268 >1zk7_A HGII, reductase, mercu 21.1 54 0.0016 13.7 3.4 33 110-143 2-34 (197)
269 >2q1w_A Putative nucleotide su 21.0 54 0.0016 13.7 4.2 37 98-134 222-265 (333)
270 >3dgh_A TRXR-1, thioredoxin re 20.9 55 0.0016 13.7 3.2 33 110-143 7-39 (209)
271 >2hg4_A DEBS, 6-deoxyerythrono 20.9 55 0.0016 13.7 2.9 32 115-146 36-68 (71)
272 >2yqu_A 2-oxoglutarate dehydro 20.7 55 0.0016 13.7 3.1 16 66-81 95-110 (186)
273 >1m1n_B Nitrogenase molybdenum 20.7 55 0.0016 13.7 4.6 15 65-79 70-84 (215)
274 >1w4r_A Thymidine kinase; type 20.6 55 0.0016 13.7 3.6 71 105-175 84-159 (195)
275 >2ejw_A HDH, homoserine dehydr 20.6 55 0.0016 13.7 3.1 55 105-161 60-114 (153)
276 >2dt8_A DEGV family protein; f 20.6 55 0.0016 13.7 3.5 18 125-142 31-48 (114)
277 >2wqp_A Polysialic acid capsul 20.6 55 0.0016 13.6 7.5 77 63-162 93-169 (276)
278 >1ges_A Glutathione reductase; 20.3 56 0.0017 13.6 2.5 10 70-79 103-112 (190)
279 >2hqm_A GR, grase, glutathione 20.3 56 0.0017 13.6 3.0 32 111-143 10-41 (207)
280 >3hzh_A Chemotaxis response re 20.2 56 0.0017 13.6 6.5 95 62-173 48-151 (157)
281 >1wj6_A KIAA0049 protein, RSGI 20.1 57 0.0017 13.6 3.4 31 115-145 64-94 (101)
No 1
>>2qip_A Protein of unknown function VPA0982; APC85975, structural genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus rimd 2210633} (A:)
Probab=100.00 E-value=4.5e-32 Score=220.66 Aligned_cols=155 Identities=28% Similarity=0.422 Sum_probs=138.4
Q ss_pred CCCCEEEEEEEHHHHHHHHHH-CCCCCCHHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 788718999807899999985-0876798999999851792999999730688731467775799988975595697534
Q gi|254780936|r 3 DPREKIALFIDGANLYASSKA-LGFDIDYRKLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKV 81 (182)
Q Consensus 3 ~~~~rvaIfID~~Nl~~~~~~-~~~~~d~~~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~ 81 (182)
++.+|+||||||+|++++.++ .++++|+.+|++.+.+.+++.++++|++.+.+.. ...|.++|++.||+++.+|
T Consensus 7 ~~~~rvaifiDg~Nl~~~~~~~~~~~~d~~~l~~~~~~~~~i~~~~~y~~~~~~~~-----~~~~~~~l~~~g~~v~~~~ 81 (165)
T 2qip_A 7 DHKEKIAILVDVQNVYYTCREAYRSNFDYNQFWYVATQEKEVVSAKAYAIASNDPK-----QRQFHHILRGVGFEVXLKP 81 (165)
T ss_dssp CCCEEEEEEEEHHHHHHHHHHHHSSCBCHHHHHHHHTTTEEEEEEEEEECCCCCHH-----HHHHHHHHHHHTCEEEECC
T ss_pred CCCCCEEEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCHH-----HCCHHHHHHHCCCEEEEEE
T ss_conf 87782899981653699998743767799999999970792899999705778555-----4125689884574256641
Q ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEEEECCCCCCCHHHHHHHC
Q ss_conf 58953788865435653299999999942115889998386658999999998-49889999831577654708999852
Q gi|254780936|r 82 AKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQR-KVKKVTIVSTVLSDPSMASDQLRRQA 160 (182)
Q Consensus 82 ~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~-~Gk~V~v~~~~~~~~~~~S~~L~~~a 160 (182)
...+..+ ..||++|+.|++||+++++++|++||||||+||+|++++||+ .|++|+++++ ++.+|++|+++|
T Consensus 82 ~~~~~~~----~~~k~~Dv~laid~~~~~~~~d~~vlvSgD~Df~p~i~~lr~~~g~~V~v~~~----~~~~s~~L~~~a 153 (165)
T 2qip_A 82 YIQRRDG----SAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFSLLVERIQQRYNKKVTVYGV----PRLTSQTLIDCA 153 (165)
T ss_dssp CCCCSSC----CCSCCCHHHHHHHHHHHGGGCSEEEEECCCGGGHHHHHHHHHHHCCEEEEEEC----GGGSCHHHHHHS
T ss_pred EEECCCC----CCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEEC----CCCCCHHHHHHC
T ss_conf 1551678----78872379999999976523799999978825899999999838958999978----998829999869
Q ss_pred CCCEEHHHHH
Q ss_conf 1115189978
Q gi|254780936|r 161 DYFMDLAYLK 170 (182)
Q Consensus 161 d~fi~l~~l~ 170 (182)
|.|++|+++.
T Consensus 154 d~~~~l~~~~ 163 (165)
T 2qip_A 154 DNFVAIDDDF 163 (165)
T ss_dssp SEEEECSGGG
T ss_pred CEEEECCCHH
T ss_conf 9889857221
No 2
>>1tfr_A T4 RNAse H; 5U-3U exonuclease, RNA:RNA, DNA:DNA, metal-dependent, magnesium-containing, hydrolase (nucleic acid); 2.06A {Enterobacteria phage T4} (A:1-182,A:262-281)
Probab=95.16 E-value=0.25 Score=28.33 Aligned_cols=51 Identities=27% Similarity=0.208 Sum_probs=34.7
Q ss_pred HHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH
Q ss_conf 9889755956975345895378886543565329999999994211588999838665899999
Q gi|254780936|r 67 LDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVA 130 (182)
Q Consensus 67 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~ 130 (182)
.+.+...|+.+...| .-.+|=-|+.=+-.....-..++|+|+|.||..|+.
T Consensus 113 ~~~l~~~gi~~~~~~-------------g~EADDvIgtla~~~~~~~~~v~IvS~DKDl~QLv~ 163 (202)
T 1tfr_A 113 DELKAYMPYIVMDID-------------KYEADDHIAVLVKKFSLEGHKILIISSDGDFTQLHK 163 (202)
T ss_dssp HHHHHHSSSEEECCT-------------TCCHHHHHHHHHHHHHHTTCCEEEECCCGGGGGGTT
T ss_pred HHHHHHCCCEEECCC-------------CCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCC
T ss_conf 999986262021248-------------852146999999876523642899826721766514
No 3
>>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} (A:1-181,A:262-290)
Probab=94.11 E-value=0.44 Score=26.76 Aligned_cols=121 Identities=17% Similarity=0.086 Sum_probs=61.3
Q ss_pred CCCEEEEEEEHHHHHHHHHHCCCC----CCHHHHHHH-HHHCCEEEEEEEEECCCC--------CCHHHHHH--------
Q ss_conf 887189998078999999850876----798999999-851792999999730688--------73146777--------
Q gi|254780936|r 4 PREKIALFIDGANLYASSKALGFD----IDYRKLLKA-FRSRAIVIRAYYYTTVVG--------DPEQQFSP-------- 62 (182)
Q Consensus 4 ~~~rvaIfID~~Nl~~~~~~~~~~----~d~~~L~~~-l~~~~~l~~~~~y~~~~~--------~~~~~~~~-------- 62 (182)
..++-.++|||.|+-+..--.+.. .-|.+.+.. +.....-..+..+....+ +.+.++..
T Consensus 16 ~~~k~llLIDG~~li~Ray~a~~~~~~i~gf~~~i~kll~~~~p~~viv~FD~~~~~~R~elyp~YKanR~~~pe~L~~q 95 (210)
T 1exn_A 16 ASRRNLXIVDGTNLGFRFKHNNSKKPFASSYVSTIQSLAKSYSARTTIVLGDKGKSVFRLEHLPEYKGNRDEKYAQRTEE 95 (210)
T ss_dssp ---CEEEEEEHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHTTEEEEEEECCBSCCHHHHHHCTTTTHHHHHHHHTSCHH
T ss_pred CCCCEEEEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHCCCC
T ss_conf 66881899958399999997589987899999999999986599769999758997317776167762899996000443
Q ss_pred ----HHHH----HHHHHHCC--CEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
Q ss_conf ----5799----98897559--5697534589537888654356532999999999421158899983866589999999
Q gi|254780936|r 63 ----LHPL----LDWLHYNG--FQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAAL 132 (182)
Q Consensus 63 ----~~~~----~~~l~~~g--~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~l 132 (182)
...+ .+.|...| +.+...+ .-.+|=-|+.=+......-..++|+|+|.||..|+
T Consensus 96 ~~~~~~~~~~~ike~l~~~g~~i~~i~~~-------------g~EADDiIatla~~~~~~g~~v~IvS~DKDl~QLv--- 159 (210)
T 1exn_A 96 EKALDEQFFEYLKDAFELCKTTFPTFTIR-------------GVEADDXAAYIVKLIGHLYDHVWLISTDGDWDTLL--- 159 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCEECCT-------------TBCHHHHHHHHHHHHGGGSSCEEEECSCGGGGGGC---
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCEEEEC-------------CCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC---
T ss_conf 04443999999999988997698688655-------------74458899999999985698699992797713257---
Q ss_pred HHCCCEEEEEE
Q ss_conf 98498899998
Q gi|254780936|r 133 QRKVKKVTIVS 143 (182)
Q Consensus 133 r~~Gk~V~v~~ 143 (182)
..+|.++.
T Consensus 160 ---~~~V~i~~ 167 (210)
T 1exn_A 160 ---TDKVSRFS 167 (210)
T ss_dssp ---CSSEEEEE
T ss_pred ---CCCEEEEC
T ss_conf ---79838833
No 4
>>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix} (A:122-261,A:351-391)
Probab=92.54 E-value=0.79 Score=25.20 Aligned_cols=103 Identities=15% Similarity=-0.017 Sum_probs=71.3
Q ss_pred HHHHHHHHHCC-EEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999985179-29999997306887314677757999889755956975345895378886543565329999999994
Q gi|254780936|r 31 RKLLKAFRSRA-IVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ 109 (182)
Q Consensus 31 ~~L~~~l~~~~-~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~ 109 (182)
..+.+++.+.. .-..+..|... ..........+.+.++..|.++...... .-+..|..-.+..+..
T Consensus 8 ~ala~yl~~~~g~kkvavi~~dd---~~yG~~~~~~~~~~l~~~G~~Vv~~~~~----------~~~~~d~~~~v~~lk~ 74 (181)
T 3eaf_A 8 CSGLAFLASEFGQGKLALAYDSK---VAYSRSPIGAIKKAAPSLGLQVVGDYDL----------PLRATEADAERIAREX 74 (181)
T ss_dssp HHHHHHHHHHHCSEEEEEEECTT---CHHHHTTHHHHHHHTGGGTEEEEEEEEC----------CTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCEEEEEECC---CCCHHHHHHHHHHHHHHCCCCCEEEEEC----------CCCCCCCCHHHHHHHH
T ss_conf 88999999850367389998147---8304789999999997536750046621----------4311222202444444
Q ss_pred H-CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf 2-115889998386658999999998498899998315
Q gi|254780936|r 110 S-EGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVL 146 (182)
Q Consensus 110 a-~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~ 146 (182)
+ .+.|.+++.+.-.|.+.+++.+++.|.+..+++...
T Consensus 75 ~~a~pdaVil~~~~~~~~~~ikq~~~~g~~~~ii~~~~ 112 (181)
T 3eaf_A 75 LAADPDYVWCGNTISSCSLLGRAXAKVGLDAFLLTNVW 112 (181)
T ss_dssp HTTCCSEEEECSCHHHHHHHHHHHHHHTCCCEEEECGG
T ss_pred HCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 32564269995255267899999997399852787414
No 5
>>3g1w_A Sugar ABC transporter; sugar-binding protein, target 11229F, transport protein, structural genomics, PSI-2; 2.02A {Bacillus halodurans c-125} (A:1-108,A:243-305)
Probab=90.55 E-value=1.3 Score=23.89 Aligned_cols=70 Identities=13% Similarity=0.097 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--CCCCEEEEECCCHH-HHHHHHHHHHCCCE
Q ss_conf 7579998897559569753458953788865435653299999999942--11588999838665-89999999984988
Q gi|254780936|r 62 PLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS--EGLEHLVIFSGDGC-FTTLVAALQRKVKK 138 (182)
Q Consensus 62 ~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a--~~~d~~iLvSGD~D-f~pli~~lr~~Gk~ 138 (182)
-.+...++++..|+++.... ..+-|..--+.+++.+ +.+|-++|.+.|.+ ..|+++++++.|..
T Consensus 22 v~~Gie~aa~~~G~~~~~~~-------------~~~~d~~~q~~~ie~li~~~vdGIii~p~d~~~~~~~i~~a~~~gIP 88 (171)
T 3g1w_A 22 CLKGFEDAAQALNVTVEYRG-------------AAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKAVDAGIP 88 (171)
T ss_dssp HHHHHHHHHHHHTCEEEEEE-------------CSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCEEEEEE-------------CCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCC
T ss_conf 99999999997299799997-------------99999999999999999779999999678737789999999986992
Q ss_pred EEEEEE
Q ss_conf 999983
Q gi|254780936|r 139 VTIVST 144 (182)
Q Consensus 139 V~v~~~ 144 (182)
|+.+..
T Consensus 89 VV~id~ 94 (171)
T 3g1w_A 89 IVLFDS 94 (171)
T ss_dssp EEEESS
T ss_pred EEEECC
T ss_conf 999816
No 6
>>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP complex, transferase; HET: ADP; 2.30A {Staphylococcus aureus} (A:1-140)
Probab=90.19 E-value=1.4 Score=23.70 Aligned_cols=100 Identities=20% Similarity=0.159 Sum_probs=62.7
Q ss_pred EEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--CCCCEEEEE
Q ss_conf 299999973068873146777579998897559569753458953788865435653299999999942--115889998
Q gi|254780936|r 42 IVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS--EGLEHLVIF 119 (182)
Q Consensus 42 ~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a--~~~d~~iLv 119 (182)
...+.....+.........+........|...|+.+..... +..-+ +.++++.+ ..+|.++++
T Consensus 23 ~~~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~g~~~~~~~t------------~~~~~---~~~~~~~~~~~~~~~ivv~ 87 (140)
T 2qv7_A 23 XRKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYAT------------EKIGD---ATLEAERAXHENYDVLIAA 87 (140)
T ss_dssp CCEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEEC------------CSTTH---HHHHHHHHTTTTCSEEEEE
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEC------------CCCCH---HHHHHHHHHHCCCCEEEEE
T ss_conf 66459999996788875799999999999987992999982------------89666---9999998887699889998
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHH
Q ss_conf 3866589999999984988999983157765470899
Q gi|254780936|r 120 SGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQL 156 (182)
Q Consensus 120 SGD~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L 156 (182)
.||+=+-.++..|.+.+....+..+.-|-.+..|+.|
T Consensus 88 GGDGTl~~vi~~l~~~~~~~~i~iiP~GT~N~fAr~l 124 (140)
T 2qv7_A 88 GGDGTLNEVVNGIAEKPNRPKLGVIPXGTVNDFGRAL 124 (140)
T ss_dssp ECHHHHHHHHHHHTTCSSCCEEEEEECSSCCHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHH
T ss_conf 6775799999999863557617999558997427860
No 7
>>3brs_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans isdg} (A:1-112,A:246-289)
Probab=88.08 E-value=1.9 Score=22.76 Aligned_cols=70 Identities=6% Similarity=0.001 Sum_probs=53.2
Q ss_pred HHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH--HCCCCEEEEECCCHH-HHHHHHHHHHCCCEE
Q ss_conf 57999889755956975345895378886543565329999999994--211588999838665-899999999849889
Q gi|254780936|r 63 LHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ--SEGLEHLVIFSGDGC-FTTLVAALQRKVKKV 139 (182)
Q Consensus 63 ~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~--a~~~d~~iLvSGD~D-f~pli~~lr~~Gk~V 139 (182)
...+.++++..|+++..... ..+-|.....+.++. .+++|.+|+++.|.+ ..++++.+++.|..|
T Consensus 26 ~~gi~~~a~~~g~~v~~~~~------------~s~~d~~~q~~~i~~l~~~~vdgiIi~~~~~~~~~~~i~~l~~~gIPV 93 (156)
T 3brs_A 26 VEGAQMAAKEYEIKLEFMAP------------EKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDAAKEIKDAGIKL 93 (156)
T ss_dssp HHHHHHHHHHHTCEEEECCC------------SSTTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHHHTTTGGGTCEE
T ss_pred HHHHHHHHHHCCCEEEEEEC------------CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCC
T ss_conf 99999999981998999967------------998899999999999997699999997872010289999886138742
Q ss_pred EEEEE
Q ss_conf 99983
Q gi|254780936|r 140 TIVST 144 (182)
Q Consensus 140 ~v~~~ 144 (182)
+++..
T Consensus 94 V~id~ 98 (156)
T 3brs_A 94 IVIDS 98 (156)
T ss_dssp EEESS
T ss_pred CCCCC
T ss_conf 00134
No 8
>>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structural genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp} (A:1-108,A:245-290)
Probab=87.92 E-value=2 Score=22.70 Aligned_cols=72 Identities=11% Similarity=0.019 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH--HCCCCEEEEECCCHHH-HHHHHHHHHCC
Q ss_conf 77757999889755956975345895378886543565329999999994--2115889998386658-99999999849
Q gi|254780936|r 60 FSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ--SEGLEHLVIFSGDGCF-TTLVAALQRKV 136 (182)
Q Consensus 60 ~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~--a~~~d~~iLvSGD~Df-~pli~~lr~~G 136 (182)
..-...+.+.++..|+.+.... ..+-|..--...++. ++++|-+|+++.|++- .+.++++++.|
T Consensus 20 ~~i~~Gie~aa~~~Gy~vil~~-------------~s~~d~~~q~~~ie~li~q~VDGIIi~~~d~~~~~~~i~~l~~~g 86 (154)
T 3d02_A 20 NRXGEGVVQAGKEFNLNASQVG-------------PSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKARDAG 86 (154)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEC-------------CSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCEEEEEE-------------CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCC
T ss_conf 9999999999997499899997-------------899999999999999997599989994258411048999999769
Q ss_pred CEEEEEEE
Q ss_conf 88999983
Q gi|254780936|r 137 KKVTIVST 144 (182)
Q Consensus 137 k~V~v~~~ 144 (182)
..+.++..
T Consensus 87 IpvV~id~ 94 (154)
T 3d02_A 87 IVVLTNES 94 (154)
T ss_dssp CEEEEESC
T ss_pred CCEEECCC
T ss_conf 95884478
No 9
>>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis} (A:1-104,A:238-283)
Probab=87.33 E-value=2.1 Score=22.48 Aligned_cols=70 Identities=13% Similarity=0.116 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH--HHCCCCEEEEECCCHHH-HHHHHHHHHCCCE
Q ss_conf 75799988975595697534589537888654356532999999999--42115889998386658-9999999984988
Q gi|254780936|r 62 PLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFE--QSEGLEHLVIFSGDGCF-TTLVAALQRKVKK 138 (182)
Q Consensus 62 ~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~--~a~~~d~~iLvSGD~Df-~pli~~lr~~Gk~ 138 (182)
-...+.+++...|+++...+. .. |..-....++ ..+++|-+|+++.|.+. .+.++.+++.|..
T Consensus 19 ii~gi~~aa~~~G~~l~i~~~------------~~--~~~~e~~~i~~ll~~~vdgIIi~~~~~~~~~~~~~~l~~~gIP 84 (150)
T 2ioy_A 19 LKNGAEEKAKELGYKIIVEDS------------QN--DSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEANSKNIP 84 (150)
T ss_dssp HHHHHHHHHHHHTCEEEEEEC------------TT--CHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCEEEEEEC------------CC--CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCE
T ss_conf 999999999975999999938------------99--9999999999998623233445663222221000023315752
Q ss_pred EEEEEEE
Q ss_conf 9999831
Q gi|254780936|r 139 VTIVSTV 145 (182)
Q Consensus 139 V~v~~~~ 145 (182)
|+.+...
T Consensus 85 vV~id~~ 91 (150)
T 2ioy_A 85 VITIDRS 91 (150)
T ss_dssp EEEESSC
T ss_pred EEEEECC
T ss_conf 8998157
No 10
>>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} (A:1-104,A:237-271)
Probab=86.96 E-value=2.3 Score=22.35 Aligned_cols=69 Identities=13% Similarity=0.047 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH--HCCCCEEEEECCCHH-HHHHHHHHHHCCCE
Q ss_conf 757999889755956975345895378886543565329999999994--211588999838665-89999999984988
Q gi|254780936|r 62 PLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ--SEGLEHLVIFSGDGC-FTTLVAALQRKVKK 138 (182)
Q Consensus 62 ~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~--a~~~d~~iLvSGD~D-f~pli~~lr~~Gk~ 138 (182)
-...+.+++++.|+++.... .+-|..-..+.++. .+++|.+|+.+.|.+ ..+.++++++.|..
T Consensus 19 i~~gi~~~a~~~G~~l~i~~--------------~~~~~~~~~~~i~~li~~~vdgiIi~~~~~~~~~~~l~~l~~~gIP 84 (139)
T 2dri_A 19 LKDGAQKEADKLGYNLVVLD--------------SQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIP 84 (139)
T ss_dssp HHHHHHHHHHHHTCEEEEEE--------------CTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCEEEEEE--------------CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 99999999998599899995--------------8999999999999998618764432122222316899999863775
Q ss_pred EEEEEE
Q ss_conf 999983
Q gi|254780936|r 139 VTIVST 144 (182)
Q Consensus 139 V~v~~~ 144 (182)
|+.+..
T Consensus 85 vV~id~ 90 (139)
T 2dri_A 85 VITLDR 90 (139)
T ss_dssp EEEESS
T ss_pred CCCCCC
T ss_conf 323565
No 11
>>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15} (A:20-131)
Probab=86.59 E-value=0.54 Score=26.22 Aligned_cols=52 Identities=12% Similarity=0.156 Sum_probs=40.6
Q ss_pred CCCEEEEECC---CHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEHH
Q ss_conf 1588999838---6658999999998498899998315776547089998521115189
Q gi|254780936|r 112 GLEHLVIFSG---DGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDLA 167 (182)
Q Consensus 112 ~~d~~iLvSG---D~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l~ 167 (182)
..|++.|+|- |.+-..++++|.++|..+.+++-. ...+..|...||-.|+++
T Consensus 58 ~tDRVLlfs~fs~dee~~~~ak~L~e~gi~~v~vs~~----~~~~~~~~~l~dvhID~~ 112 (112)
T 3jx9_A 58 AVDRVLIFTPDTERSDLLASLARYDAWHTPYSIITLG----DVTETLERSIAPLALKFD 112 (112)
T ss_dssp TTCEEEEEESCSCCHHHHHHHHHHHHHTCCEEEEESS----CCCTTGGGSSSCEECCCC
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCC----CCCCCHHHHEECCCCCCC
T ss_conf 5687999759976389999999963687659996368----778850441221012578
No 12
>>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium LT2} (A:1-107,A:244-301)
Probab=86.55 E-value=2.4 Score=22.21 Aligned_cols=72 Identities=10% Similarity=0.002 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--CCCCEEEEECCCHH-HHHHHHHHHHCC
Q ss_conf 777579998897559569753458953788865435653299999999942--11588999838665-899999999849
Q gi|254780936|r 60 FSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS--EGLEHLVIFSGDGC-FTTLVAALQRKV 136 (182)
Q Consensus 60 ~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a--~~~d~~iLvSGD~D-f~pli~~lr~~G 136 (182)
..-...+.++++..|+++.... -.+-|..-....++.+ +++|-+||.+.|.+ ..+.++.++++|
T Consensus 19 ~~i~~Gi~~aa~~~Gy~vil~~-------------~s~~d~~~q~~~i~~li~~~vDGIIi~~~~~~~~~~~i~~l~~~g 85 (165)
T 1tjy_A 19 TSGGNGAQEAGKALGIDVTYDG-------------PTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRG 85 (165)
T ss_dssp HHHHHHHHHHHHHHTCEEEECC-------------CSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCEEEEEE-------------CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9999999999998199899997-------------999999999999999997399744201333202456888765058
Q ss_pred CEEEEEEE
Q ss_conf 88999983
Q gi|254780936|r 137 KKVTIVST 144 (182)
Q Consensus 137 k~V~v~~~ 144 (182)
..|..+..
T Consensus 86 IPVV~id~ 93 (165)
T 1tjy_A 86 VKILTWDS 93 (165)
T ss_dssp CEEEEESS
T ss_pred CCEEECCC
T ss_conf 52010354
No 13
>>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} (A:1-106,A:248-291)
Probab=86.08 E-value=2.5 Score=22.06 Aligned_cols=71 Identities=8% Similarity=0.039 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--CCCCEEEEECCCHH-HHHHHHHHHHCCC
Q ss_conf 77579998897559569753458953788865435653299999999942--11588999838665-8999999998498
Q gi|254780936|r 61 SPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS--EGLEHLVIFSGDGC-FTTLVAALQRKVK 137 (182)
Q Consensus 61 ~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a--~~~d~~iLvSGD~D-f~pli~~lr~~Gk 137 (182)
.-......++...|+++.... .+-|..-...+++.+ +++|-+|+++.|.+ -.++++++++.|.
T Consensus 22 ~i~~gi~~aa~~~Gy~l~i~~--------------~~~d~~~~~~~i~~l~~~~vdgIIi~~~~~~~~~~~i~~l~~~gI 87 (150)
T 3l49_A 22 KAYQAQIAEIERLGGTAIALD--------------AGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQKINDAGI 87 (150)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE--------------CTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCEEEEEE--------------CCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 999999999997399999993--------------899999999999999975999999927840305899999998699
Q ss_pred EEEEEEEE
Q ss_conf 89999831
Q gi|254780936|r 138 KVTIVSTV 145 (182)
Q Consensus 138 ~V~v~~~~ 145 (182)
.|+.+...
T Consensus 88 PvV~i~~~ 95 (150)
T 3l49_A 88 PLFTVDTA 95 (150)
T ss_dssp CEEEESCC
T ss_pred CEEECCCC
T ss_conf 19966776
No 14
>>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum} (A:158-285)
Probab=85.60 E-value=2.6 Score=21.91 Aligned_cols=102 Identities=12% Similarity=0.026 Sum_probs=67.2
Q ss_pred HHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 99999851792999999730688731467775799988975595697534589537888654356532999999999421
Q gi|254780936|r 32 KLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSE 111 (182)
Q Consensus 32 ~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~ 111 (182)
.+.+.+.+.+.-..+ |.+.+........+...|.+++...|..+..... ....+..-.....-...
T Consensus 7 ~a~~~L~~~G~~~ia--~i~~~~~~~~~~~R~~g~~~~~~~~~i~~~~~~~------------~~~~~~~~~~~~~~~~~ 72 (128)
T 3jvd_A 7 QLTESVLGGSGMNIA--ALVGEESLSTTQERMRGISHAASIYGAEVTFHFG------------HYSVESGEEMAQVVFNN 72 (128)
T ss_dssp HHHHHHCCSSSCEEE--EEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC------------CSSHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCCCEEEE--EECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEC------------CCCHHHHHHHHHHHHHH
T ss_conf 420012345531687--5046532112455446677789860864222002------------54224577888988750
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCE----EEEEEEECC
Q ss_conf 158899983866589999999984988----999983157
Q gi|254780936|r 112 GLEHLVIFSGDGCFTTLVAALQRKVKK----VTIVSTVLS 147 (182)
Q Consensus 112 ~~d~~iLvSGD~Df~pli~~lr~~Gk~----V~v~~~~~~ 147 (182)
.--+++++++|.-...++..+++.|.+ |-++++...
T Consensus 73 ~~~~ai~~~~d~~a~~~~~~l~~~g~~vP~di~iv~~d~~ 112 (128)
T 3jvd_A 73 GLPDALIVASPRLMAGVMRAFTRLNVRVPHDVVIGGYDDP 112 (128)
T ss_dssp CCCSEEEECCHHHHHHHHHHHHHTTCCTTTTCEEEEESCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCH
T ss_conf 4311555434666655357888875057897799998987
No 15
>>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12} (A:1-121,A:255-277)
Probab=85.16 E-value=2.8 Score=21.78 Aligned_cols=71 Identities=8% Similarity=0.043 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--CCCCEEEEECCCHHHHHHHHHHHHCCC
Q ss_conf 777579998897559569753458953788865435653299999999942--115889998386658999999998498
Q gi|254780936|r 60 FSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS--EGLEHLVIFSGDGCFTTLVAALQRKVK 137 (182)
Q Consensus 60 ~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a--~~~d~~iLvSGD~Df~pli~~lr~~Gk 137 (182)
..-.....+.++..|+.+.... .+-|.....++++.. .++|-+|+++.+.+..++.+.+++.|.
T Consensus 37 ~~i~~gi~~~~~~~gy~v~i~~--------------~~~d~~~~~~~i~~l~~~~vDGiIi~~~~~~~~~~~~~l~~~~i 102 (144)
T 3brq_A 37 SELLFHAARXAEEKGRQLLLAD--------------GKHSAEEERQAIQYLLDLRCDAIXIYPRFLSVDEIDDIIDAHSQ 102 (144)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEC--------------CTTSHHHHHHHHHHHHHTTCSEEEEECSSSCHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHCCCEEEEEE--------------CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 9999999999998599999996--------------89998999999998863465302440333211788999875179
Q ss_pred EEEEEEE
Q ss_conf 8999983
Q gi|254780936|r 138 KVTIVST 144 (182)
Q Consensus 138 ~V~v~~~ 144 (182)
.|.++..
T Consensus 103 PvV~i~~ 109 (144)
T 3brq_A 103 PIXVLNR 109 (144)
T ss_dssp CEEEESC
T ss_pred CCCCCCC
T ss_conf 8522222
No 16
>>3fkj_A Putative phosphosugar isomerases; NP_459564.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.12A {Salmonella typhimurium LT2} (A:1-173)
Probab=84.57 E-value=3 Score=21.62 Aligned_cols=111 Identities=10% Similarity=0.111 Sum_probs=63.3
Q ss_pred HHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 89999998517929999997306887314677757999889755956975345895378886543565329999999994
Q gi|254780936|r 30 YRKLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ 109 (182)
Q Consensus 30 ~~~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~ 109 (182)
...+-.....-.+..+.+.|+.- ........+...|...|..+...+. .+..........
T Consensus 27 ~~~~~~~~~~l~~a~~I~i~G~G-----~S~~~a~~~~~~l~~~~~~~~~~~~---------------~~~~~~~~~~~~ 86 (173)
T 3fkj_A 27 ARRIISDILGKQNIERVWFVGCG-----GSLTGFWPGKYFLDCEASKLAVGYI---------------TSNEFVHATPKA 86 (173)
T ss_dssp HHHHHHHHHTTSCCCEEEEEEST-----HHHHTTHHHHHHHHHHCSSCEEEEE---------------EHHHHHHSCCTT
T ss_pred HHHHHHHHHHHCCCCEEEEEEEC-----HHHHHHHHHHHHHHHHCCCCCEEEE---------------CCHHHHCCCCCC
T ss_conf 89999999965899989999803-----6999999999999986239988997---------------107876059766
Q ss_pred HCCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 21158899983866---5899999999849889999831577654708999852111518
Q gi|254780936|r 110 SEGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 110 a~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
.+.-|.+|++|.-+ +.+.+++.+|++|.+|+.++-. ....|.+.||..+.+
T Consensus 87 ~~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~------~~s~l~~~ad~~l~~ 140 (173)
T 3fkj_A 87 LGKNSVVILASQQGNTAETVAAARVAREKGAATIGLVYQ------PDTPLCEYSDYIIEY 140 (173)
T ss_dssp CSTTEEEEEEESSSCCHHHHHHHHHHHHHTCEEEEEESS------TTCHHHHTCSEEEEC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCC------CCCCEEECCCCEEEE
T ss_conf 899988999878999768999999998739725512146------887513415723787
No 17
>>3l6u_A ABC-type sugar transport system periplasmic component; structural genomics, nysgrc, target 11006S, PSI-2, protein structure initiative; 1.90A {Exiguobacterium sibiricum} (A:112-249)
Probab=83.97 E-value=3.1 Score=21.46 Aligned_cols=105 Identities=9% Similarity=-0.067 Sum_probs=67.4
Q ss_pred HHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH-
Q ss_conf 9999985179299999973068873146777579998897559569753458953788865435653299999999942-
Q gi|254780936|r 32 KLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS- 110 (182)
Q Consensus 32 ~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a- 110 (182)
.+.+.+.+.+.-.....+...+........+...|.++|+..|........ ....+..-+..++...
T Consensus 12 ~~~~~L~~~g~~~~~i~~i~g~~~~~~~~~R~~g~~~~l~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l 79 (138)
T 3l6u_A 12 IKNELIKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIENEPTLSIVDSV------------SGNYDPVTSERVXRQVI 79 (138)
T ss_dssp HHHHHHHHHSCSCEEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEEE------------ECTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHH------------HCCCCHHHHHHHHHHHH
T ss_conf 877789972888750899848998768999998534445543885300110------------01210788999998632
Q ss_pred --CCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEEEECCC
Q ss_conf --1158899983866589999999984988-9999831577
Q gi|254780936|r 111 --EGLEHLVIFSGDGCFTTLVAALQRKVKK-VTIVSTVLSD 148 (182)
Q Consensus 111 --~~~d~~iLvSGD~Df~pli~~lr~~Gk~-V~v~~~~~~~ 148 (182)
..--+.|++++|.=-..+++.+++.|++ +.++++....
T Consensus 80 ~~~~~~~~i~~~~d~~a~g~~~al~~~g~~di~ivg~D~~~ 120 (138)
T 3l6u_A 80 DSGIPFDAVYCHNDDIAXGVLEALKKAKISGKIVVGIDGNR 120 (138)
T ss_dssp HTTCCCSEEEESSHHHHHHHHHHHHHTTCCCCEEEEEECCH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCH
T ss_conf 14788459997781899999999997699999799997956
No 18
>>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} (A:107-247)
Probab=83.72 E-value=3.2 Score=21.39 Aligned_cols=106 Identities=7% Similarity=-0.243 Sum_probs=63.8
Q ss_pred HHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCH---HHHHHHHHHH-
Q ss_conf 999851792999999730688731467775799988975595697534589537888654356532---9999999994-
Q gi|254780936|r 34 LKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMD---VELAVDAFEQ- 109 (182)
Q Consensus 34 ~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~D---v~laiD~~~~- 109 (182)
.+.+.+...-.+...|...+........+...|.++++..|..+....... .....+ ..-..+.+..
T Consensus 9 ~~~l~~~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 79 (141)
T 3l49_A 9 ALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELR---------DVIPNTIQSAYSNVTDMLTK 79 (141)
T ss_dssp HHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBC---------CCSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEE---------CCCCCCHHHHHHHHHHHHHH
T ss_conf 999999749997799992675552256999999999987899824533520---------34787689999999999986
Q ss_pred HCCC--CEEEEECCCHHHHHHHHHHHHCCCE-EEEEEEECCC
Q ss_conf 2115--8899983866589999999984988-9999831577
Q gi|254780936|r 110 SEGL--EHLVIFSGDGCFTTLVAALQRKVKK-VTIVSTVLSD 148 (182)
Q Consensus 110 a~~~--d~~iLvSGD~Df~pli~~lr~~Gk~-V~v~~~~~~~ 148 (182)
.+.. =.+|+++.|.--+.+++.|++.|.+ |.++++....
T Consensus 80 ~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~di~ivg~d~~~ 121 (141)
T 3l49_A 80 YPNEGDVGAIWACWDVPMIGATQALQAAGRTDIRTYGVDGSP 121 (141)
T ss_dssp CCSTTSCCEEEESSHHHHHHHHHHHHHTTCCSCEEEEEECCH
T ss_pred HCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCH
T ss_conf 124676756996786789999999998299985799984998
No 19
>>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} (A:140-279,A:378-419)
Probab=83.63 E-value=3.2 Score=21.37 Aligned_cols=100 Identities=7% Similarity=-0.084 Sum_probs=57.0
Q ss_pred HHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 99999851792999999730688731467775799988975595697534589537888654356532999999999421
Q gi|254780936|r 32 KLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSE 111 (182)
Q Consensus 32 ~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~ 111 (182)
.++.++.......+..... .+..........|.+.+++.|.++....... .+..|..=.+..+.. .
T Consensus 14 ~~~~~l~~~~g~kkVaii~---~d~~yG~~~~~~f~~~l~~~G~~Vv~~~~~~----------~~~~d~~~~i~~i~~-a 79 (182)
T 3h5l_A 14 DIEDNGEFSRPNNKIAIIT---GPGIYSVNIANAIRDGAGEYGYDVSLFETVA----------IPVSDWGPTLAKLRA-D 79 (182)
T ss_dssp HHHHTTSCCCSSSEEEEEE---CSSHHHHHHHHHHHHHGGGGTCEEEEEEECC----------SSCSCCHHHHHHHHH-S
T ss_pred HHHHHHHHCCCCCEEEEEE---CCCHHHHHHHHHHHHHHHHHCCCEEECCCCC----------CCCCCCHHHHHHHHC-C
T ss_conf 8887776326887899995---3743778999999999997325222101255----------321210046666530-4
Q ss_pred CCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 15889998-38665899999999849889999831
Q gi|254780936|r 112 GLEHLVIF-SGDGCFTTLVAALQRKVKKVTIVSTV 145 (182)
Q Consensus 112 ~~d~~iLv-SGD~Df~pli~~lr~~Gk~V~v~~~~ 145 (182)
.-|.+|++ +...|.+.+++.+++.|....+++..
T Consensus 80 ~~d~Viv~~~~~~~~~~~lkq~~~~G~~~~ii~~~ 114 (182)
T 3h5l_A 80 PPAVIVVTHFYPQDQALFMNQFMTDPTNSLVYLQY 114 (182)
T ss_dssp CCSEEEECCCCHHHHHHHHHHHTTSCCSCEEEECS
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 99789997227324589999987514687299962
No 20
>>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} (A:163-292)
Probab=83.11 E-value=3.4 Score=21.24 Aligned_cols=99 Identities=8% Similarity=-0.018 Sum_probs=62.7
Q ss_pred HHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH---HH
Q ss_conf 999851792999999730688731467775799988975595697534589537888654356532999999999---42
Q gi|254780936|r 34 LKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFE---QS 110 (182)
Q Consensus 34 ~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~---~a 110 (182)
.+.+.+.|. +...|.+.+........+...|.++++..|..+...... ..+..-...++. ..
T Consensus 9 ~~~l~~~G~--r~I~~i~~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 73 (130)
T 1jye_A 9 VEHLVALGH--QQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREG-------------DWSAMSGFQQTMQMLNE 73 (130)
T ss_dssp HHHHHHHTC--CSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSEEEEC-------------CSSHHHHHHHHHHHHHT
T ss_pred HHHHHHCCC--CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC-------------CCCHHHHHHHHHHHHHC
T ss_conf 999997599--669999477432289999999999999759986434347-------------75177799999999735
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCE----EEEEEEECC
Q ss_conf 1158899983866589999999984988----999983157
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKK----VTIVSTVLS 147 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~----V~v~~~~~~ 147 (182)
..-=++++++.|.....++..++++|.+ +.|+++...
T Consensus 74 ~~~~~ai~~~~d~~a~~~l~~l~~~g~~ip~di~ivgfd~~ 114 (130)
T 1jye_A 74 GIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDT 114 (130)
T ss_dssp TCCCSEEEESSHHHHHHHHHHHHHTTCCBTTTBEEECSBCC
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 99983687488899999999999808978998699983783
No 21
>>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structural genomics, protein structure initiative; 2.20A {Bacteroides fragilis nctc 9343} (A:117-253)
Probab=82.66 E-value=3.5 Score=21.13 Aligned_cols=106 Identities=11% Similarity=-0.071 Sum_probs=59.4
Q ss_pred HHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 99998517929999997306887314677757999889755956975345895378886543565329999999994211
Q gi|254780936|r 33 LLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEG 112 (182)
Q Consensus 33 L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~ 112 (182)
|.+.+.+.+++.........+........+...|.+.|...|.++.......-... .++ -...+.++++ .+
T Consensus 12 l~~~~~g~~~i~~i~~~~~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~-----~~~--~~~~~~~~L~--~~ 82 (137)
T 3gbv_A 12 LXLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYXQEHHPACNILELNLHADL-----NIE--DSRXLDDFFR--EH 82 (137)
T ss_dssp HHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESSC-----SSC--HHHHHHHHHH--HC
T ss_pred HHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCC-----HHH--HHHHHHHHHH--CC
T ss_conf 99970899559998403578877658999996412121014787327888833788-----899--9999985440--28
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEEEECC
Q ss_conf 588999838665899999999849-88999983157
Q gi|254780936|r 113 LEHLVIFSGDGCFTTLVAALQRKV-KKVTIVSTVLS 147 (182)
Q Consensus 113 ~d~~iLvSGD~Df~pli~~lr~~G-k~V~v~~~~~~ 147 (182)
-+.-.+++.+....-.++.+++.| +.+.|+++...
T Consensus 83 p~~~~i~~~~d~~a~~~~al~~~g~~di~ivg~D~~ 118 (137)
T 3gbv_A 83 PDVKHGITFNSKVYIIGEYLQQRRKSDFSLIGYDLL 118 (137)
T ss_dssp TTCCEEEESSSCTHHHHHHHHHTTCCSCEEEEESCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 987679997675899999998724477403505898
No 22
>>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G* (A:117-249)
Probab=82.23 E-value=3.4 Score=21.21 Aligned_cols=103 Identities=10% Similarity=0.088 Sum_probs=62.5
Q ss_pred HHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH---
Q ss_conf 99998517929999997306887314677757999889755956975345895378886543565329999999994---
Q gi|254780936|r 33 LLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ--- 109 (182)
Q Consensus 33 L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~--- 109 (182)
+.+.+.+.|.=..++.. +..........+...|.++++..|.++...... ....+......+...
T Consensus 8 a~~~L~~~G~r~i~~i~-~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 75 (133)
T 2fep_A 8 AVKLLVDKGHTDIAFVS-GPMAEPINRSKKLQGYKRALEEANLPFNEQFVA-----------EGDYTYDSGLEALQHLMS 75 (133)
T ss_dssp HHHHHHHTTCSSEEEEE-SCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEE-----------ECCSCHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCEEEEEE-CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEE-----------ECCCCCCCHHHHHHHHHH
T ss_conf 99999862994367860-576655310001368899999718998710588-----------446434320667899983
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHCCCE----EEEEEEECC
Q ss_conf 21158899983866589999999984988----999983157
Q gi|254780936|r 110 SEGLEHLVIFSGDGCFTTLVAALQRKVKK----VTIVSTVLS 147 (182)
Q Consensus 110 a~~~d~~iLvSGD~Df~pli~~lr~~Gk~----V~v~~~~~~ 147 (182)
...--++|++++|.-...++..+++.|.+ +-++++...
T Consensus 76 ~~~~~~~i~~~~d~~a~~~~~~l~~~~~~vP~di~iigfd~~ 117 (133)
T 2fep_A 76 LDKKPTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNT 117 (133)
T ss_dssp SSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECC
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 699996799778999999999999849998841589741781
No 23
>>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1} (A:109-239)
Probab=81.86 E-value=3.8 Score=20.94 Aligned_cols=104 Identities=10% Similarity=-0.123 Sum_probs=67.5
Q ss_pred HHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 99998517929999997306887314677757999889755956975345895378886543565329999999994211
Q gi|254780936|r 33 LLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEG 112 (182)
Q Consensus 33 L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~ 112 (182)
+.+.+.+.+.-.. .|.+.+.+......+.+.|.++++..|..+........ .-..+.......+.....
T Consensus 8 a~~~L~~~G~~~i--~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 76 (131)
T 3clk_A 8 ATNLLINEGHRQI--GIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIKPG---------DYSYTSGEQAXKAFGKNT 76 (131)
T ss_dssp HHHHHHTTTCCSE--EEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEECC---------CSSHHHHHHHHHHHCTTC
T ss_pred HHHHHCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC---------CCHHHHHHHHHHHHHHCC
T ss_conf 6544222332112--23478832220144567777778870865320001222---------101221113334566456
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEEEEECC
Q ss_conf 5889998386658999999998498----8999983157
Q gi|254780936|r 113 LEHLVIFSGDGCFTTLVAALQRKVK----KVTIVSTVLS 147 (182)
Q Consensus 113 ~d~~iLvSGD~Df~pli~~lr~~Gk----~V~v~~~~~~ 147 (182)
--++|+++.|.-...++..++++|. .|.|+++...
T Consensus 77 ~~~aii~~~~~~a~~~~~~l~~~g~~iP~di~ii~fd~~ 115 (131)
T 3clk_A 77 DLTGIIAASDXTAIGILNQASSFGIEVPKDLSIVSIDGT 115 (131)
T ss_dssp CCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECC
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 674675324544333220114445668742223246735
No 24
>>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} (A:)
Probab=81.53 E-value=3.9 Score=20.87 Aligned_cols=99 Identities=17% Similarity=0.133 Sum_probs=58.4
Q ss_pred HHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999985179299999973068873146777579998897559569753458953788865435653299999999942
Q gi|254780936|r 31 RKLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS 110 (182)
Q Consensus 31 ~~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a 110 (182)
..+.+.+.+. .+.++|+ .......-..+...|...|+.+.... +.......+
T Consensus 38 ~~i~~~i~~a---~~I~i~G-----~G~S~~~a~~~~~~l~~~g~~~~~~~-----~~~~~~~~~--------------- 89 (200)
T 1vim_A 38 GEMIKLIDSA---RSIFVIG-----AGRSGYIAKAFAMRLMHLGYTVYVVG-----ETVTPRITD--------------- 89 (200)
T ss_dssp HHHHHHHHHS---SCEEEEC-----SHHHHHHHHHHHHHHHHTTCCEEETT-----STTCCCCCT---------------
T ss_pred HHHHHHHHCC---CCEEEEE-----ECCCCCCHHHHCCCCCCCCCCCCCCC-----CHHHHEECC---------------
T ss_conf 9999999719---9589993-----16424342331012223332222232-----103300025---------------
Q ss_pred CCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEE
Q ss_conf 1158899983866---589999999984988999983157765470899985211151
Q gi|254780936|r 111 EGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMD 165 (182)
Q Consensus 111 ~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~ 165 (182)
=|.+|++|--| +.+.+++.+|++|.+|++++-.. ...|.+.||..+.
T Consensus 90 --~dvvI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~------~s~l~~~ad~~i~ 139 (200)
T 1vim_A 90 --QDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKR------DSSLAKMADVVMV 139 (200)
T ss_dssp --TCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCT------TSHHHHHCSEEEE
T ss_pred --CCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECC------CCCCCCCCCEEEE
T ss_conf --6615651233220237999999986235643664035------5443233667999
No 25
>>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, structural genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus JCSC1435} (A:128-256)
Probab=81.34 E-value=3.9 Score=20.83 Aligned_cols=101 Identities=8% Similarity=-0.079 Sum_probs=64.3
Q ss_pred HHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 99998517929999997306887314677757999889755956975345895378886543565329999999994211
Q gi|254780936|r 33 LLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEG 112 (182)
Q Consensus 33 L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~ 112 (182)
+.+.+.+.+.-.. .|.+.+........+...|.+++...|.++...... .......-....+.....
T Consensus 8 a~~~L~~~G~~~i--~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 74 (129)
T 3huu_A 8 LTQYLYHLGHRHI--LFLQESGHYAVTEDRSVGFKQYCDDVKISNDCVVIK-----------SMNDLRDFIKQYCIDASH 74 (129)
T ss_dssp HHHHHHHTTCCSE--EEEEESSCBHHHHHHHHHHHHHHHHTTCCCCEEEEC-----------SHHHHHHHC--------C
T ss_pred HHHHHHHCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-----------CCCHHHHHHHHHHHHCCC
T ss_conf 9999987098765--556799766079999999999999859996506751-----------342156689999995799
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE----EEEEEEEC
Q ss_conf 58899983866589999999984988----99998315
Q gi|254780936|r 113 LEHLVIFSGDGCFTTLVAALQRKVKK----VTIVSTVL 146 (182)
Q Consensus 113 ~d~~iLvSGD~Df~pli~~lr~~Gk~----V~v~~~~~ 146 (182)
.-++|+++.|.-..-+++.++++|.+ |-|+++..
T Consensus 75 ~~~aii~~~d~~a~~~~~~l~~~~~~ip~di~ivgfd~ 112 (129)
T 3huu_A 75 MPSVIITSDVMLNMQLLNVLYEYQLRIPEDIQTATFNT 112 (129)
T ss_dssp CCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEESC
T ss_pred CCCEEECCCHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 98633138889999999999975998786069983378
No 26
>>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp} (A:106-241)
Probab=80.35 E-value=4.3 Score=20.62 Aligned_cols=109 Identities=6% Similarity=-0.148 Sum_probs=63.6
Q ss_pred HHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 99999851792999999730688731467775799988975595697534589537888654356532999999999421
Q gi|254780936|r 32 KLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSE 111 (182)
Q Consensus 32 ~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~ 111 (182)
.+.+.+.+.+.=..++ .+.+........+...|.++++..|............... ..................
T Consensus 7 ~a~~~L~~~G~r~I~~--i~~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 80 (136)
T 2qu7_A 7 IATKRVLESTCKEVGL--LLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQQL----GTNAQIYSGYEATKTLLS 80 (136)
T ss_dssp HHHHHHHTSSCCCEEE--EECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSC----SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEE--EECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCC----CHHHHHHHHHHHHHHHHC
T ss_conf 7777776522561258--9405310366776788887899839986743410244332----136778899999998500
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCE----EEEEEEEC
Q ss_conf 158899983866589999999984988----99998315
Q gi|254780936|r 112 GLEHLVIFSGDGCFTTLVAALQRKVKK----VTIVSTVL 146 (182)
Q Consensus 112 ~~d~~iLvSGD~Df~pli~~lr~~Gk~----V~v~~~~~ 146 (182)
.--++|+++.|.--..++..++++|.+ |-|+++..
T Consensus 81 ~~~~ai~~~~d~~a~~~~~~l~~~g~~iP~di~ii~fd~ 119 (136)
T 2qu7_A 81 KGIKGIVATNHLLLLGALQAIKESEKEIKKDVIIVGFDD 119 (136)
T ss_dssp TTCCEEEECSHHHHHHHHHHHHHSSCCBTTTBEEEEESC
T ss_pred CCCCEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCC
T ss_conf 256426775122244531111100333223321346687
No 27
>>1nri_A Hypothetical protein HI0754; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Haemophilus influenzae} (A:1-233)
Probab=80.22 E-value=4.3 Score=20.59 Aligned_cols=66 Identities=9% Similarity=-0.018 Sum_probs=47.5
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 56532999999999421158899983866---5899999999849889999831577654708999852111518
Q gi|254780936|r 95 KSSMDVELAVDAFEQSEGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 95 kk~~Dv~laiD~~~~a~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
....|.............=|.+|++|.-| ..+.+++.+|++|.+|+.++-. ....|.+.||..+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~dlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~~------~~s~l~~~ad~~l~~ 191 (233)
T 1nri_A 123 EDNTKAVLNDLQSIHFSKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASN------PKSEXAEIADIAIET 191 (233)
T ss_dssp GGCTTHHHHHHHHTTCCTTSEEEEECTTSCCHHHHHHHHHHHHHTCEEEEEESS------TTCHHHHHSSEEEEC
T ss_pred CCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECC------CCCHHHHHCCEEEEC
T ss_conf 354888999999834898884899868999777898999987516625666348------874356858988868
No 28
>>2fn9_A Ribose ABC transporter, periplasmic ribose- binding protein; RBP, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima MSB8} PDB: 2fn8_A* (A:1-106,A:247-290)
Probab=78.68 E-value=4.8 Score=20.29 Aligned_cols=69 Identities=12% Similarity=0.069 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH--HCCCCEEEEECCCHH-HHHHHHHHHHCCCE
Q ss_conf 757999889755956975345895378886543565329999999994--211588999838665-89999999984988
Q gi|254780936|r 62 PLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ--SEGLEHLVIFSGDGC-FTTLVAALQRKVKK 138 (182)
Q Consensus 62 ~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~--a~~~d~~iLvSGD~D-f~pli~~lr~~Gk~ 138 (182)
-.....++++..|+.+..... + -|..-....++. ++.+|-+|+++.|.+ ..+.+.++++.|..
T Consensus 20 i~~gie~aa~~~G~~v~l~~~------------~--~d~~~~~~~i~~l~~~~vdgIIi~~~~~~~~~~~i~~l~~~gIP 85 (150)
T 2fn9_A 20 LAETAKQRAEQLGYEATIFDS------------Q--NDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKEAGIP 85 (150)
T ss_dssp HHHHHHHHHHHTTCEEEEEEC------------T--TCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCEEEEEEC------------C--CCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 999999999985998999968------------9--99899999999999659986987315652149999999975996
Q ss_pred EEEEEE
Q ss_conf 999983
Q gi|254780936|r 139 VTIVST 144 (182)
Q Consensus 139 V~v~~~ 144 (182)
|+++..
T Consensus 86 vV~id~ 91 (150)
T 2fn9_A 86 VFCVDR 91 (150)
T ss_dssp EEEESS
T ss_pred CEEECC
T ss_conf 256436
No 29
>>3hba_A Putative phosphosugar isomerase; YP_563707.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217} (A:42-147)
Probab=78.61 E-value=3.3 Score=21.33 Aligned_cols=50 Identities=8% Similarity=0.034 Sum_probs=37.9
Q ss_pred CCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 1158899983866---5899999999849889999831577654708999852111518
Q gi|254780936|r 111 EGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 111 ~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
..=|.+|++|--+ +.+.+++.+|++|.+++.++-.. ...|.+.||..+.+
T Consensus 48 ~~~d~vi~iS~sg~t~~~~~~~~~ak~~ga~ii~iT~~~------~s~la~~ad~~l~~ 100 (106)
T 3hba_A 48 LAGGLVIVISQSGRSPDILAQARXAKNAGAFCVALVNDE------TAPIKDIVDVVIPL 100 (106)
T ss_dssp CTTCEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCT------TSGGGGTSSEEEEC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCC------CCCCHHHCCCCCCC
T ss_conf 888289998337787679999998986697378763047------77422321543212
No 30
>>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} (A:1-139,A:277-286)
Probab=78.18 E-value=5 Score=20.20 Aligned_cols=86 Identities=14% Similarity=0.130 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEEECCCCC----CCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 67775799988975595697534589537888----65435653299999999942115889998386658999999998
Q gi|254780936|r 59 QFSPLHPLLDWLHYNGFQVVAKVAKEFTENCG----RKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQR 134 (182)
Q Consensus 59 ~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~----~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~ 134 (182)
.........+.|.+.|+++..-+......... ........+.......-+...++|.+|.+-|||=|..++..+..
T Consensus 18 ~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~lGGDGT~L~a~~~~~~ 97 (149)
T 1u0t_A 18 ATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGGDGTFLRAAELARN 97 (149)
T ss_dssp GSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCC
T ss_conf 99999999999997899899984102104654467203442276421025543444565589997587789999997503
Q ss_pred CCCEEEEEEE
Q ss_conf 4988999983
Q gi|254780936|r 135 KVKKVTIVST 144 (182)
Q Consensus 135 ~Gk~V~v~~~ 144 (182)
.++.+..+..
T Consensus 98 ~~~PilgIn~ 107 (149)
T 1u0t_A 98 ASIPVLGVNL 107 (149)
T ss_dssp HTCCEEEEEC
T ss_pred CCCCEEEECC
T ss_conf 5883798578
No 31
>>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis} (A:164-293)
Probab=77.85 E-value=5.1 Score=20.14 Aligned_cols=103 Identities=15% Similarity=0.006 Sum_probs=65.6
Q ss_pred HHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH-HH
Q ss_conf 99999851792999999730688731467775799988975595697534589537888654356532999999999-42
Q gi|254780936|r 32 KLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFE-QS 110 (182)
Q Consensus 32 ~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~-~a 110 (182)
.+.+.|.+.+.-..+ +.+..........+...|.++++..|..+...... ....+..-..-... ..
T Consensus 7 ~a~~~L~~~G~r~I~--~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 73 (130)
T 2o20_A 7 QSTKKLIDSGNKKIA--YIMGSLKDVENTERMVGYQEALLEANIEFDENLVF-----------EGNYSYEQGKALAERLL 73 (130)
T ss_dssp HHHHHHHHTTCSSEE--EECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEE-----------CSCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEE-----------ECCCHHHHHHHHHHHHH
T ss_conf 999999871887644--33478778219999999999999849998855699-----------55624777799999986
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEEEECC
Q ss_conf 115889998386658999999998498----8999983157
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVK----KVTIVSTVLS 147 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk----~V~v~~~~~~ 147 (182)
..--++|+++.|.-...++..++++|. .+-|+++...
T Consensus 74 ~~~~~aii~~~~~~a~~~~~~l~~~g~~iP~di~ii~fd~~ 114 (130)
T 2o20_A 74 ERGATSAVVSHDTVAVGLLSAMMDKGVKVPEDFEIISGANS 114 (130)
T ss_dssp HTTCCEEEESCHHHHHHHHHHHHHTTCCTTTTCEEEESSCC
T ss_pred HHCCCCEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 40345200135565555438999828988897699983784
No 32
>>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} (A:1-113,A:249-288)
Probab=77.62 E-value=5.2 Score=20.10 Aligned_cols=71 Identities=14% Similarity=0.040 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH--HCCCCEEEEECCCHH-HHHHHHHHHHCCCE
Q ss_conf 757999889755956975345895378886543565329999999994--211588999838665-89999999984988
Q gi|254780936|r 62 PLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ--SEGLEHLVIFSGDGC-FTTLVAALQRKVKK 138 (182)
Q Consensus 62 ~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~--a~~~d~~iLvSGD~D-f~pli~~lr~~Gk~ 138 (182)
-.....++++..|+.+.... ....-|..-..+.++. ++++|-+|+++.|.+ ..+.++++++.|..
T Consensus 19 i~~gi~~aa~~~Gy~l~i~~------------~~s~~d~~~~~~~i~~li~~~vDGIIi~~~~~~~~~~~i~~l~~~gIP 86 (153)
T 1gud_A 19 MKKGIEDEAKTLGVSVDIFA------------SPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIY 86 (153)
T ss_dssp HHHHHHHHHHHHTCCEEEEE------------CSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHCCCEEEEEE------------CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCC
T ss_conf 99999999997499899996------------789899999999999999759985764254332114899999971991
Q ss_pred EEEEEE
Q ss_conf 999983
Q gi|254780936|r 139 VTIVST 144 (182)
Q Consensus 139 V~v~~~ 144 (182)
|+++..
T Consensus 87 vV~id~ 92 (153)
T 1gud_A 87 LVNLDE 92 (153)
T ss_dssp EEEESS
T ss_pred EEECCC
T ss_conf 762377
No 33
>>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B* (A:105-237,A:281-313)
Probab=77.43 E-value=5.2 Score=20.06 Aligned_cols=80 Identities=13% Similarity=-0.011 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--CCCC-EEEEECCCHHHHHHHH
Q ss_conf 873146777579998897559569753458953788865435653299999999942--1158-8999838665899999
Q gi|254780936|r 54 GDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS--EGLE-HLVIFSGDGCFTTLVA 130 (182)
Q Consensus 54 ~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a--~~~d-~~iLvSGD~Df~pli~ 130 (182)
........+...|.++|+..|+++.... ....|...+...++.. .+-+ .+|++++|.--.-+++
T Consensus 29 ~~~~~~~~R~~Gf~~~l~~~gi~v~~~~-------------~~~~~~~~~~~~~~~lL~~~p~i~aI~~~~d~~a~gv~~ 95 (166)
T 2h3h_A 29 LTAMNSLQRIQGFKDAIKDSEIEIVDIL-------------NDEEDGARAVSLAEAALNAHPDLDAFFGVYAYNGPAQAL 95 (166)
T ss_dssp SSCHHHHHHHHHHHHHHTTSSCEEEEEE-------------ECSSCHHHHHHHHHHHHHHCTTCCEEEECSTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCC-------------CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHH
T ss_conf 7606778887543432035543332233-------------445655554557899996199965899716502078999
Q ss_pred HHHHCCCE--EEEEEEEC
Q ss_conf 99984988--99998315
Q gi|254780936|r 131 ALQRKVKK--VTIVSTVL 146 (182)
Q Consensus 131 ~lr~~Gk~--V~v~~~~~ 146 (182)
.+++.|+. +.++++..
T Consensus 96 al~~~G~~~~i~iiG~D~ 113 (166)
T 2h3h_A 96 VVKNAGKVGKVKIVCFDT 113 (166)
T ss_dssp HHHHTTCTTTSEEEEECC
T ss_pred HHHHCCCCCCEEEEECCC
T ss_conf 999769986513540579
No 34
>>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} (A:1-109,A:242-289)
Probab=76.25 E-value=5.6 Score=19.86 Aligned_cols=73 Identities=7% Similarity=0.032 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH--HHCCCCEEEEECCCHHHHHHHHHHHHCCC
Q ss_conf 7775799988975595697534589537888654356532999999999--42115889998386658999999998498
Q gi|254780936|r 60 FSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFE--QSEGLEHLVIFSGDGCFTTLVAALQRKVK 137 (182)
Q Consensus 60 ~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~--~a~~~d~~iLvSGD~Df~pli~~lr~~Gk 137 (182)
..-......++...|+.+..... .. |..-....++ ...++|.+|+++.+.+-..++..++..|.
T Consensus 23 ~~~~~gi~~~a~~~g~~v~i~~~------------~~--~~~~~~~~i~~l~~~~vDGiIi~~~~~~~~~~~~~l~~~~i 88 (157)
T 1dbq_A 23 AEIIEAVEKNCFQKGYTLILGNA------------WN--NLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHI 88 (157)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEC------------TT--CHHHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHCCCEEEEEEC------------CC--CHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99999999999986999999968------------99--98999999999884587668842655650578999860699
Q ss_pred EEEEEEEEC
Q ss_conf 899998315
Q gi|254780936|r 138 KVTIVSTVL 146 (182)
Q Consensus 138 ~V~v~~~~~ 146 (182)
.|+++....
T Consensus 89 PvV~id~~~ 97 (157)
T 1dbq_A 89 PMVVMDWGE 97 (157)
T ss_dssp CEEEEECSS
T ss_pred CEEEEEECC
T ss_conf 689985036
No 35
>>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcription, transcription regulation; 2.35A {Burkholderia thailandensis E264} (A:109-240)
Probab=76.11 E-value=5.7 Score=19.84 Aligned_cols=105 Identities=10% Similarity=-0.103 Sum_probs=62.2
Q ss_pred HHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 99998517929999997306887314677757999889755956975345895378886543565329999999994211
Q gi|254780936|r 33 LLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEG 112 (182)
Q Consensus 33 L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~ 112 (182)
+.+.+.+.+.=.. .|.+.+........+...|.++++..|..+........... .. ...-.+..+.....
T Consensus 8 a~~~L~~~G~r~i--~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~ 77 (132)
T 3egc_A 8 AVEYLIARGHTRI--GAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVR------AD--NGRDGAIKVLTGAD 77 (132)
T ss_dssp HHHHHHHTTCCSE--EEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC--------------CCHHHHHHHHTC-C
T ss_pred HHHHHHHCCCCEE--EEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEECCCCC------HH--HHHHHHHHHHHCCC
T ss_conf 8999997699558--66127721220335558999999983998543013247752------67--78999999985478
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE----EEEEEEECC
Q ss_conf 58899983866589999999984988----999983157
Q gi|254780936|r 113 LEHLVIFSGDGCFTTLVAALQRKVKK----VTIVSTVLS 147 (182)
Q Consensus 113 ~d~~iLvSGD~Df~pli~~lr~~Gk~----V~v~~~~~~ 147 (182)
--++|++++|.-...++..|++.|.+ +.|+++...
T Consensus 78 ~~~ai~~~~d~~a~~~~~~l~~~g~~iP~di~vvg~d~~ 116 (132)
T 3egc_A 78 RPTALLTSSHRITEGAMQALNVLGLRYGPDVEIVSFDNL 116 (132)
T ss_dssp CCSEEEESSHHHHHHHHHHHHHHTCCBTTTBEEEEESCC
T ss_pred CCCHHHCCCCCCCCCCEEHHHCCCCCCCCCEEEEECCCH
T ss_conf 863022023200245131222059856754014531776
No 36
>>3brs_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans isdg} (A:113-245)
Probab=76.11 E-value=5.7 Score=19.84 Aligned_cols=89 Identities=13% Similarity=-0.039 Sum_probs=56.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH--HHCC-CCEEEEECCCHH
Q ss_conf 9730688731467775799988975595697534589537888654356532999999999--4211-588999838665
Q gi|254780936|r 48 YYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFE--QSEG-LEHLVIFSGDGC 124 (182)
Q Consensus 48 ~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~--~a~~-~d~~iLvSGD~D 124 (182)
.+...+........+...|.+.++..+..+..... ...+..-+..++. +..+ --..|++++|.-
T Consensus 23 ~~i~g~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~ 89 (133)
T 3brs_A 23 GVISFVKNSKTAMDREEGLKIGLSDDSNKIEAIYY-------------CDSNYDKAYDGTVELLTKYPDISVMVGLNQYS 89 (133)
T ss_dssp EEEESCTTSHHHHHHHHHHHHHHGGGGGGEEEEEE-------------CTTCHHHHHHHHHHHHHHCTTEEEEEESSHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH-------------HHHCHHHHHHHHHHHHHCCCCCCEEECCCCHH
T ss_conf 88425531077888876499999863333420243-------------21120899999997652187521342155278
Q ss_pred HHHHHHHHHHCCC--EEEEEEEECCCC
Q ss_conf 8999999998498--899998315776
Q gi|254780936|r 125 FTTLVAALQRKVK--KVTIVSTVLSDP 149 (182)
Q Consensus 125 f~pli~~lr~~Gk--~V~v~~~~~~~~ 149 (182)
...+++.|++.|+ .|.++++.....
T Consensus 90 a~gv~~al~~~g~~~di~iig~D~~~~ 116 (133)
T 3brs_A 90 ATGAARAIKDMSLEAKVKLVCIDSSME 116 (133)
T ss_dssp HHHHHHHHHHTTCTTTSEEEEEESCSC
T ss_pred HHHHHHHHHHCCCCCCEEEECCCCCHH
T ss_conf 999999999749866403423689499
No 37
>>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli} (A:1-108,A:251-276)
Probab=76.03 E-value=5.7 Score=19.82 Aligned_cols=70 Identities=9% Similarity=0.089 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH--HCCCCEEEEECCCHH-HHHHHHHHHHCCC
Q ss_conf 7757999889755956975345895378886543565329999999994--211588999838665-8999999998498
Q gi|254780936|r 61 SPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ--SEGLEHLVIFSGDGC-FTTLVAALQRKVK 137 (182)
Q Consensus 61 ~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~--a~~~d~~iLvSGD~D-f~pli~~lr~~Gk 137 (182)
.-.+.+.+++++.|+++..... +-|.......++. .+++|-+||.+.|.. -.+.++.+++.|.
T Consensus 19 ~i~~gi~~~a~~~G~~l~i~~~--------------~~d~~~e~~~i~~l~~~~vDGIIi~~~~~~~~~~~i~~~~~~~i 84 (134)
T 2vk2_A 19 AETNVAKSEAEKRGITLKIADG--------------QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEI 84 (134)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEC--------------TTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCEEEEEEC--------------CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCC
T ss_conf 9999999999985998999958--------------99999999999999975999999832565411688999986199
Q ss_pred EEEEEEE
Q ss_conf 8999983
Q gi|254780936|r 138 KVTIVST 144 (182)
Q Consensus 138 ~V~v~~~ 144 (182)
.|+++..
T Consensus 85 PVV~id~ 91 (134)
T 2vk2_A 85 PVFLLDR 91 (134)
T ss_dssp CEEEESS
T ss_pred CEEEECC
T ss_conf 7577445
No 38
>>2iks_A DNA-binding transcriptional dual regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.85A {Escherichia coli K12} (A:1-121,A:252-293)
Probab=76.02 E-value=5.7 Score=19.82 Aligned_cols=103 Identities=6% Similarity=0.012 Sum_probs=64.7
Q ss_pred CCCCCCHHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHH
Q ss_conf 08767989999998517929999997306887314677757999889755956975345895378886543565329999
Q gi|254780936|r 24 LGFDIDYRKLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELA 103 (182)
Q Consensus 24 ~~~~~d~~~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~la 103 (182)
+||..+. ..+.+..+..-..+........ ..-..-.....+.+...|+.+.... .+-|..-.
T Consensus 4 LgY~PN~--~ArsL~s~kS~tIgvivpdl~~--~ff~~ii~gI~~~a~~~Gy~vii~~--------------s~~~~e~e 65 (163)
T 2iks_A 4 HNYHPNA--VAAGLRAGRTRSIGLVIPDLEN--TSYTRIANYLERQARQRGYQLLIAC--------------SEDQPDNE 65 (163)
T ss_dssp ----------------CCCCEEEEEESCSCS--HHHHHHHHHHHHHHHHTTCEEEEEE--------------CTTCHHHH
T ss_pred CCCCCCH--HHHHHHHCCCCEEEEEECCCCC--HHHHHHHHHHHHHHHHCCCEEEEEE--------------CCCCHHHH
T ss_conf 9882899--9999861899989999299988--7999999999999998699999994--------------79975889
Q ss_pred HHHHHHH--CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 9999942--1158899983866589999999984988999983
Q gi|254780936|r 104 VDAFEQS--EGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVST 144 (182)
Q Consensus 104 iD~~~~a--~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~ 144 (182)
.++++.. .++|.+||++...+-.+.+..+++.+..|+++.-
T Consensus 66 ~~~l~~l~~~~vDGiIl~~~~~~~~~~~~~l~~~~iPvVlid~ 108 (163)
T 2iks_A 66 XRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDR 108 (163)
T ss_dssp HHHHHHHHHTTCSEEEECCSSCTTCHHHHTTTTSSSCEEEEES
T ss_pred HHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEC
T ss_conf 9987620145443578831433212577776516976899841
No 39
>>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp} (A:115-246)
Probab=75.55 E-value=5.9 Score=19.75 Aligned_cols=101 Identities=7% Similarity=-0.031 Sum_probs=66.0
Q ss_pred HHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH---
Q ss_conf 99998517929999997306887314677757999889755956975345895378886543565329999999994---
Q gi|254780936|r 33 LLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ--- 109 (182)
Q Consensus 33 L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~--- 109 (182)
+.+.+.+.+.-.. .|.+.+.+......+...|.+++...|..+...... ....+..-..+.+..
T Consensus 8 a~~~L~~~G~~~i--~~i~~~~~~~~~~~R~~gf~~a~~~~g~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 74 (132)
T 3hcw_A 8 LTRHVIEQGVDEL--IFITEKGNFEVSKDRIQGFETVASQFNLDYQIIETS-----------NEREVILNYMQNLHTRLK 74 (132)
T ss_dssp HHHHHHHHCCSEE--EEEEESSCCHHHHHHHHHHHHHHHHTTCEEEEEEEC-----------SCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC-----------CCCHHHHHHHHHHHHHCC
T ss_conf 8887520132233--224555432014555688999998749851101145-----------540356666555543203
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEEEEC
Q ss_conf 2115889998386658999999998498----899998315
Q gi|254780936|r 110 SEGLEHLVIFSGDGCFTTLVAALQRKVK----KVTIVSTVL 146 (182)
Q Consensus 110 a~~~d~~iLvSGD~Df~pli~~lr~~Gk----~V~v~~~~~ 146 (182)
...--++|+++.|.-...+++.+++.|. .|.|+++..
T Consensus 75 ~~~~~~ai~~~~d~~a~~~~~~l~~~g~~iP~di~ii~fd~ 115 (132)
T 3hcw_A 75 DPNIKQAIISLDAMLHLAILSVLYELNIEIPKDVMTATFND 115 (132)
T ss_dssp CTTSCEEEEESSHHHHHHHHHHHHHTTCCTTTTEEEEEECC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 57776422222201333335544203322322100225688
No 40
>>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding protein, alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5} (A:1-121,A:264-350)
Probab=74.46 E-value=6.3 Score=19.57 Aligned_cols=69 Identities=10% Similarity=-0.003 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH----CCCCEEEEECCCHHHHHHHHHHHHCCC
Q ss_conf 7579998897559569753458953788865435653299999999942----115889998386658999999998498
Q gi|254780936|r 62 PLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS----EGLEHLVIFSGDGCFTTLVAALQRKVK 137 (182)
Q Consensus 62 ~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a----~~~d~~iLvSGD~Df~pli~~lr~~Gk 137 (182)
-.....++.+.+|+++.... .+-|.....+.++.. .++|.+++...|....++++++.+.|.
T Consensus 22 v~~gie~aA~~~G~~l~v~~--------------s~~d~~~q~~~ie~lia~~~~vD~Iii~p~~~~~~~~i~~a~~~gI 87 (208)
T 3h75_A 22 YSQFXQAAARDLGLDLRILY--------------AERDPQNTLQQARELFQGRDKPDYLXLVNEQYVAPQILRLSQGSGI 87 (208)
T ss_dssp HHHHHHHHHHHHTCEEEEEE--------------CTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHCCCEEEEEE--------------CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCC
T ss_conf 99999999997399899994--------------8999999999999998479986999977842036999999997799
Q ss_pred EEEEEEE
Q ss_conf 8999983
Q gi|254780936|r 138 KVTIVST 144 (182)
Q Consensus 138 ~V~v~~~ 144 (182)
.|+.+-.
T Consensus 88 PVV~ids 94 (208)
T 3h75_A 88 KLFIVNS 94 (208)
T ss_dssp EEEEEES
T ss_pred EEEEECC
T ss_conf 4999266
No 41
>>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding protein, alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5} (A:122-263)
Probab=74.40 E-value=6.3 Score=19.56 Aligned_cols=89 Identities=12% Similarity=-0.079 Sum_probs=60.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH---CCCCEEEEECCC
Q ss_conf 99973068873146777579998897559569753458953788865435653299999999942---115889998386
Q gi|254780936|r 46 AYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS---EGLEHLVIFSGD 122 (182)
Q Consensus 46 ~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a---~~~d~~iLvSGD 122 (182)
...+............+...|.++++..|....... ...+.+..-+...+... ..--++|++++|
T Consensus 26 ~i~~i~~~~~~~~~~~R~~Gf~~a~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d 93 (142)
T 3h75_A 26 ELLAFSGLKVTPAAQLRERGLRRALAEHPQVHLRQL------------VYGEWNRERAYRQAQQLLKRYPKTQLVWSAND 93 (142)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHCTTEEEEEE------------EECTTCHHHHHHHHHHHHHHCTTEEEEEESSH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHH------------HHHCCCHHHHHHHHHHHHHHCCCCCEEEECCH
T ss_conf 799995786772777766655334430787541100------------01111147999999999974999739998877
Q ss_pred HHHHHHHHHHHHCCCE----EEEEEEEC
Q ss_conf 6589999999984988----99998315
Q gi|254780936|r 123 GCFTTLVAALQRKVKK----VTIVSTVL 146 (182)
Q Consensus 123 ~Df~pli~~lr~~Gk~----V~v~~~~~ 146 (182)
.-...++..+++.|.+ |.|+++..
T Consensus 94 ~~a~g~~~~l~~~g~~vp~dv~vvgfD~ 121 (142)
T 3h75_A 94 EXALGAXQAARELGRKPGTDLLFSGVNS 121 (142)
T ss_dssp HHHHHHHHHHHHTTCCBTTTBEEEEESC
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEECC
T ss_conf 9999999999975999999859999898
No 42
>>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} (A:122-254,A:330-346)
Probab=74.37 E-value=6.3 Score=19.56 Aligned_cols=118 Identities=9% Similarity=-0.072 Sum_probs=67.9
Q ss_pred HHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH-
Q ss_conf 9999998517929999997306887314677757999889755956975345895378886543565329999999994-
Q gi|254780936|r 31 RKLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ- 109 (182)
Q Consensus 31 ~~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~- 109 (182)
..+.+++.+.....+..... .+..........+.+.+++.|.++....... -+..|..-.+ ..+
T Consensus 5 ~ala~~l~~~~~~k~vaii~---~d~~~G~~~~~~~~~~l~~~G~~vv~~~~~~----------~~~~d~~~~i--~~i~ 69 (150)
T 1usg_A 5 PTAAKYILETVKPQRIAIIH---DKQQYGEGLARSVQDGLKAANANVVFFDGIT----------AGEKDFSALI--ARLK 69 (150)
T ss_dssp HHHHHHHHHTTCCSSEEEEE---CSSHHHHHHHHHHHHHHHHTTCCEEEEEECC----------TTCCCCHHHH--HHHH
T ss_pred HHHHHHHHCCCCCCEEEEEC---CCCCCCHHHHHHHHHHHHCCCCEEEEEEECC----------CCCCCHHHHH--HHHH
T ss_conf 44544321024552036741---6520125678776554413442278887336----------2111013688--8887
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCC
Q ss_conf 211588999838665899999999849889999831577654708999852111
Q gi|254780936|r 110 SEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYF 163 (182)
Q Consensus 110 a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~f 163 (182)
....|.+++.....|-..+++.+++.|.+..+++............+.++++..
T Consensus 70 ~~~~d~Ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~G~ 123 (150)
T 1usg_A 70 KENIDFVYYGGYYPEMGQMLRQARSVGLKTQFMGPEGVGNASLSNIAGDAAEGM 123 (150)
T ss_dssp HTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEEECGGGCCTTHHHHHGGGGTTC
T ss_pred HCCCCEEEEEECCHHHHHEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCE
T ss_conf 538746999744434432141012235563033100014653121111233312
No 43
>>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815} (A:111-243)
Probab=74.02 E-value=6.4 Score=19.51 Aligned_cols=103 Identities=13% Similarity=-0.031 Sum_probs=67.5
Q ss_pred HHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH--
Q ss_conf 999998517929999997306887314677757999889755956975345895378886543565329999999994--
Q gi|254780936|r 32 KLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ-- 109 (182)
Q Consensus 32 ~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~-- 109 (182)
.+.+.+.+.+.-.. .|.+..........+.+.|.+++...|..+...... ....+..-...++..
T Consensus 8 ~a~~~L~~~G~~~i--~~i~~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l 74 (133)
T 2rgy_A 8 LAAATLIEHGHRKL--AVISGPFTASDNVERLDGFFDELARHGIARDSVPLI-----------ESDFSPEGGYAATCQLL 74 (133)
T ss_dssp HHHHHHHHTTCCSE--EEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEE-----------ECCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCC--CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC-----------CCCCCHHHHHHHHHHHH
T ss_conf 02456765300110--002467554431111213678998728864312122-----------34567888999986530
Q ss_pred -HCCCCEEEEECCCHHHHHHHHHHHHCCCE----EEEEEEECC
Q ss_conf -21158899983866589999999984988----999983157
Q gi|254780936|r 110 -SEGLEHLVIFSGDGCFTTLVAALQRKVKK----VTIVSTVLS 147 (182)
Q Consensus 110 -a~~~d~~iLvSGD~Df~pli~~lr~~Gk~----V~v~~~~~~ 147 (182)
...--++|+++.|.-...++..++++|.+ +-|+++...
T Consensus 75 ~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vP~di~ivgfd~~ 117 (133)
T 2rgy_A 75 ESKAPFTGLFCANDTXAVSALARFQQLGISVPGDVSVIGYDDD 117 (133)
T ss_dssp HHTCCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 1356875343468367665567776504557852102214681
No 44
>>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813, JCSG, PSI, protein structure initiative; 1.80A {Thermotoga maritima} (A:44-182)
Probab=73.70 E-value=6.5 Score=19.46 Aligned_cols=50 Identities=14% Similarity=0.190 Sum_probs=37.7
Q ss_pred CCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 1158899983866---5899999999849889999831577654708999852111518
Q gi|254780936|r 111 EGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 111 ~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
..=|.+|++|--+ +-+.+++.++++|.+|+.++-. ....|.+.||..+.+
T Consensus 56 ~~~d~vi~iS~sg~t~~~~~~~~~ak~~g~~vi~iT~~------~~s~l~~~ad~~l~~ 108 (139)
T 1j5x_A 56 EERGLAFLFSRTGNTTEVLLANDVLKKRNHRTIGITIE------EESRLAKESDLPLVF 108 (139)
T ss_dssp CSSEEEEEECSSSCCHHHHHHHHHHHHTTEEEEEEESC------TTSHHHHHSSEEEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECC------CCCCHHHCCCEEEEE
T ss_conf 89867999768999679999999998769808876246------664100036605642
No 45
>>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase, PHI, structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} (A:)
Probab=73.46 E-value=4.8 Score=20.32 Aligned_cols=80 Identities=16% Similarity=0.108 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCH---HHHHHHHHHHH
Q ss_conf 467775799988975595697534589537888654356532999999999421158899983866---58999999998
Q gi|254780936|r 58 QQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDG---CFTTLVAALQR 134 (182)
Q Consensus 58 ~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~---Df~pli~~lr~ 134 (182)
..+.....+...|...|+.+.... +.......++ |.+|++|--| +.+.+++.+|+
T Consensus 50 ~S~~~a~~~~~~l~~~g~~~~~~~-----~~~~~~~~~~-----------------d~vi~iS~sG~~~~~~~~~~~ak~ 107 (180)
T 1jeo_A 50 RSGYIGRCFAMRLMHLGFKSYFVG-----ETTTPSYEKD-----------------DLLILISGSGRTESVLTVAKKAKN 107 (180)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEETT-----STTCCCCCTT-----------------CEEEEEESSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEC-----CCCCCCCCCC-----------------CEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 899999999999997797237521-----2324678988-----------------889997699980899999999997
Q ss_pred CCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 49889999831577654708999852111518
Q gi|254780936|r 135 KVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 135 ~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
+|.+|+.++...+ .|.+.||..+.+
T Consensus 108 ~g~~vI~iT~~~s-------~l~~~ad~~l~~ 132 (180)
T 1jeo_A 108 INNNIIAIVXEXG-------NVVEFADLTIPL 132 (180)
T ss_dssp TCSCEEEEESSCC-------GGGGGCSEEEEC
T ss_pred CCCCEEEEECCCC-------CCHHHCCEEEEC
T ss_conf 5997999969999-------756667788863
No 46
>>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus} (A:107-232)
Probab=73.00 E-value=6.8 Score=19.35 Aligned_cols=100 Identities=10% Similarity=-0.019 Sum_probs=64.0
Q ss_pred HHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 99998517929999997306887314677757999889755956975345895378886543565329999999994211
Q gi|254780936|r 33 LLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEG 112 (182)
Q Consensus 33 L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~ 112 (182)
++..+.+.+. +...|.+.+........+...|.+++...|..+..... ....+...+...+...+.
T Consensus 7 ~a~~ll~~G~--r~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 72 (126)
T 3hs3_A 7 ESIKLLSKKI--EKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYLLEET------------PENNPYISAQSALNKSNQ 72 (126)
T ss_dssp HHHHTSCTTC--CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC------------CSSCHHHHHHHHHHTGGG
T ss_pred HHHHHHHCCC--CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEC------------CCCCHHHHHHHHHHCCCC
T ss_conf 8877764487--26999826621004677767899886434753013203------------554489999999854789
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE----EEEEEEECC
Q ss_conf 58899983866589999999984988----999983157
Q gi|254780936|r 113 LEHLVIFSGDGCFTTLVAALQRKVKK----VTIVSTVLS 147 (182)
Q Consensus 113 ~d~~iLvSGD~Df~pli~~lr~~Gk~----V~v~~~~~~ 147 (182)
. ++|+++.|..-..+++.+++.|.+ +.|+++...
T Consensus 73 ~-~ai~~~~d~~a~~v~~~l~~~g~~ip~di~i~~fd~~ 110 (126)
T 3hs3_A 73 F-DAIITVNDLYAAEIIKEAKRRNLKIPDDFQLVGYDNN 110 (126)
T ss_dssp C-SEEECSSHHHHHHHHHHHHHTTCCTTTTCEEECSBCC
T ss_pred C-CEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEECCH
T ss_conf 9-8899648588887989999749877864321430887
No 47
>>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; NP_391141.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis} (A:1-155)
Probab=71.76 E-value=7.3 Score=19.17 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=38.1
Q ss_pred CCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 1158899983866---5899999999849889999831577654708999852111518
Q gi|254780936|r 111 EGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 111 ~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
..=|.+|++|--+ +.+.+++.++++|.+++.++-. ....|.+.||..+.+
T Consensus 73 ~~~dlvi~iS~sG~t~~~~~~~~~a~~~g~~~I~iT~~------~~s~l~~~ad~~l~~ 125 (155)
T 3eua_A 73 GEKSLVILCSHSGNTPETVKAAAFARGKGALTIAXTFK------PESPLAQEAQYVAQY 125 (155)
T ss_dssp STTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESC------TTSHHHHHSSEEEEC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCC------CCCCHHHCCCCCCEE
T ss_conf 99968999808999867999998655302213321276------321112124544000
No 48
>>3l6u_A ABC-type sugar transport system periplasmic component; structural genomics, nysgrc, target 11006S, PSI-2, protein structure initiative; 1.90A {Exiguobacterium sibiricum} (A:1-111,A:250-293)
Probab=71.11 E-value=7.5 Score=19.08 Aligned_cols=72 Identities=7% Similarity=0.020 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--CCCCEEEEECCCH-HHHHHHHHHHHC
Q ss_conf 6777579998897559569753458953788865435653299999999942--1158899983866-589999999984
Q gi|254780936|r 59 QFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS--EGLEHLVIFSGDG-CFTTLVAALQRK 135 (182)
Q Consensus 59 ~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a--~~~d~~iLvSGD~-Df~pli~~lr~~ 135 (182)
...-.....+.++..|+.++... .+-|..-..+.++.+ ..+|-+||++.|+ ...|.++.|++.
T Consensus 23 ~~~i~~gi~~~a~~~Gy~lii~~--------------~~~d~~~q~~~i~~li~~~vdGiII~p~~~~~~~~~l~~L~~~ 88 (155)
T 3l6u_A 23 AQRLINAFKAEAKANKYEALVAT--------------SQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEEAKKA 88 (155)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEE--------------CSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCEEEEEE--------------CCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHC
T ss_conf 99999999999998799899997--------------9999899999999999769989997156630159999999976
Q ss_pred CCEEEEEEE
Q ss_conf 988999983
Q gi|254780936|r 136 VKKVTIVST 144 (182)
Q Consensus 136 Gk~V~v~~~ 144 (182)
|..|+++..
T Consensus 89 gIPvV~id~ 97 (155)
T 3l6u_A 89 GIPVFAIDR 97 (155)
T ss_dssp TCCEEEESS
T ss_pred CCEEEEECC
T ss_conf 992999887
No 49
>>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.07A {Escherichia coli K12} (A:1-94,A:422-459)
Probab=70.90 E-value=7.6 Score=19.05 Aligned_cols=40 Identities=18% Similarity=0.031 Sum_probs=17.7
Q ss_pred HHHHHHHHHH--CCCCEEEEECCC--HHHHHHHHHHHHCCCEEE
Q ss_conf 9999999942--115889998386--658999999998498899
Q gi|254780936|r 101 ELAVDAFEQS--EGLEHLVIFSGD--GCFTTLVAALQRKVKKVT 140 (182)
Q Consensus 101 ~laiD~~~~a--~~~d~~iLvSGD--~Df~pli~~lr~~Gk~V~ 140 (182)
..+.|+++.+ ..+..+++-+|= .|-..+.+.+++.|.++.
T Consensus 47 ~~v~~vi~ea~~~GvkvViIt~G~~e~~~~~l~~~Ar~~GirII 90 (132)
T 3dmy_A 47 EYAAELANQALDRNLNVXXFSDNVTLEDEIQLKTRAREKGLLVX 90 (132)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 99999999999879978999599998999999999998799999
No 50
>>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} (A:)
Probab=70.47 E-value=7.7 Score=18.99 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=47.2
Q ss_pred HHHHHHHHHCCCEEEEEE------EEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCC-EEEEECCCHHHHHHHHHHHHCC
Q ss_conf 799988975595697534------589537888654356532999999999421158-8999838665899999999849
Q gi|254780936|r 64 HPLLDWLHYNGFQVVAKV------AKEFTENCGRKRVKSSMDVELAVDAFEQSEGLE-HLVIFSGDGCFTTLVAALQRKV 136 (182)
Q Consensus 64 ~~~~~~l~~~g~~v~~~~------~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d-~~iLvSGD~Df~pli~~lr~~G 136 (182)
......|+..|+++...- +.+.+|..+ ...++-+|..=++.-+.- ..+| ++..+..|+-...++..-.-..
T Consensus 26 lyl~~~Lk~~G~~v~Va~npAAlkLlevaDpek-~Ylk~~vdld~~l~~i~e-~d~d~i~~FvHNDagvsY~~T~~~i~~ 103 (157)
T 1kjn_A 26 IYTSHKLKKKGFRVTVTANPAALRLVQVADPEG-IYTDEXVDLESCINELAE-GDYEFLAGFVPNDAAAAYLVTFAGILN 103 (157)
T ss_dssp HHHHHHHHHTTCEEEEEECHHHHHHHHHHSTTC-CSCSEEEEHHHHHHHCCT-TSCSEEEEEESSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCC-CHHHCCCCHHHHHHHHHH-CCCCEEEEEEECCCHHHHHHHHHHHHC
T ss_conf 999999986697359965989974654218652-013052159998625653-787779999736622668999998727
Q ss_pred CEEEEEEEE
Q ss_conf 889999831
Q gi|254780936|r 137 KKVTIVSTV 145 (182)
Q Consensus 137 k~V~v~~~~ 145 (182)
++...+.|.
T Consensus 104 ~~~~aiVFG 112 (157)
T 1kjn_A 104 TETLAIIFD 112 (157)
T ss_dssp SEEEEEEEC
T ss_pred CCEEEEEEC
T ss_conf 864899933
No 51
>>2poc_A D-fructose-6-, isomerase domain of glutamine-fructose-6- phosphate transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans SC5314} PDB: 2put_A* 2puv_A* 2puw_A* (A:1-206)
Probab=70.25 E-value=7.8 Score=18.97 Aligned_cols=50 Identities=10% Similarity=-0.001 Sum_probs=36.8
Q ss_pred CCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 1158899983866---5899999999849889999831577654708999852111518
Q gi|254780936|r 111 EGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 111 ~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
..=|.+|.+|.-| +.+.+++.++++|.+|+.++-.. ...|.+.||..+.+
T Consensus 96 ~~~dlvI~iS~sG~t~~~i~~~~~a~~~g~~vI~IT~~~------~s~l~~~ad~~l~~ 148 (206)
T 2poc_A 96 FRDDTCVFVSQSGETADSILALQYCLERGALTVGIVNSV------GSSMSRQTHCGVHI 148 (206)
T ss_dssp CTTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESST------TSHHHHHSSEEEEC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCC------CCCCCCCCCCCCCC
T ss_conf 666449997369996799999999986698599995477------74210234500034
No 52
>>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} (A:105-236)
Probab=69.59 E-value=8.1 Score=18.88 Aligned_cols=100 Identities=13% Similarity=-0.014 Sum_probs=58.6
Q ss_pred HHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH---HH
Q ss_conf 999851792999999730688731467775799988975595697534589537888654356532999999999---42
Q gi|254780936|r 34 LKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFE---QS 110 (182)
Q Consensus 34 ~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~---~a 110 (182)
.+.+.+.+.-...+.+.+..........+...|.++++..|.++...... ..+..=+..++. ..
T Consensus 9 ~~~L~~~g~~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 75 (132)
T 2dri_A 9 GDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPA-------------DFDRIKGLNVMQNLLTA 75 (132)
T ss_dssp HHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHHHHHHHTCEEEEEEEC-------------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE-------------CCCCCCCCCHHHHHHHC
T ss_conf 99999967999569999488766389999876666652134555224420-------------11111120046676422
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEEEC
Q ss_conf 115889998386658999999998498-899998315
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVK-KVTIVSTVL 146 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk-~V~v~~~~~ 146 (182)
..--+.|++.+|.--.-++..|++.|. .|.++++..
T Consensus 76 ~~~~~ai~~~~~~~a~g~~~~l~~~g~~di~ivg~D~ 112 (132)
T 2dri_A 76 HPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDG 112 (132)
T ss_dssp CTTCCEEEESSHHHHHHHHHHHHHHTCCSCEEEEEEC
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHCCCCCCEEECCC
T ss_conf 5684256326768888899999984899877543568
No 53
>>3k4h_A Putative transcriptional regulator; structural genomics, protein structure initiative; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98} (A:115-246)
Probab=68.38 E-value=8.6 Score=18.72 Aligned_cols=102 Identities=17% Similarity=0.002 Sum_probs=66.5
Q ss_pred HHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH-
Q ss_conf 9999985179299999973068873146777579998897559569753458953788865435653299999999942-
Q gi|254780936|r 32 KLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS- 110 (182)
Q Consensus 32 ~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a- 110 (182)
.+.+.+.+.+.-..+ |.+.+........+...|.++++..|..+...... ..+.+..-+..++...
T Consensus 7 ~a~~~L~~~G~~~i~--~i~~~~~~~~~~~R~~g~~~a~~~~g~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 73 (132)
T 3k4h_A 7 EVAEYLISLGHKQIA--FIGGGSDLLVTRDRLAGXSDALKLADIVLPKEYIL-----------HFDFSRESGQQAVEELX 73 (132)
T ss_dssp HHHHHHHHTTCCCEE--EEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEE-----------ECCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEE--EEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------CCCCCCHHHHHHHHHHH
T ss_conf 877777653154069--99437775066655455411034302466520022-----------33322247999999999
Q ss_pred --CCCCEEEEECCCHHHHHHHHHHHHCCCE----EEEEEEEC
Q ss_conf --1158899983866589999999984988----99998315
Q gi|254780936|r 111 --EGLEHLVIFSGDGCFTTLVAALQRKVKK----VTIVSTVL 146 (182)
Q Consensus 111 --~~~d~~iLvSGD~Df~pli~~lr~~Gk~----V~v~~~~~ 146 (182)
..--++++++.|.-...+++.++++|.+ |.|+++..
T Consensus 74 ~~~~~~~aii~~~d~~a~~~~~~l~~~g~~iP~di~iigfd~ 115 (132)
T 3k4h_A 74 GLQQPPTAIXATDDLIGLGVLSALSKKGFVVPKDVSIVSFNN 115 (132)
T ss_dssp TSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEESC
T ss_pred HCCCCCCEEEECCCCCCCHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf 469999789745852110027999980887775136863068
No 54
>>3g68_A Putative phosphosugar isomerase; YP_001089791.1, SIS domain, double-SIS domain protein, structural genomics; HET: MSE CIT; 1.80A {Clostridium difficile 630} (A:1-188)
Probab=68.33 E-value=6 Score=19.67 Aligned_cols=98 Identities=12% Similarity=0.067 Sum_probs=53.7
Q ss_pred CCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 7929999997306887314677757999889755-956975345895378886543565329999999994211588999
Q gi|254780936|r 40 RAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYN-GFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVI 118 (182)
Q Consensus 40 ~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~-g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iL 118 (182)
-....+.+.++. ...+.....+...|... |..+.... ..... .........=|.+|+
T Consensus 31 i~~a~~I~i~G~-----G~S~~~A~~~~~~l~~~~~~~~~~~~----~~~~~-------------~~~~~~~~~~d~vI~ 88 (188)
T 3g68_A 31 RTNLKKIIITGS-----GTSYHSGVQVQPYLQNLLDIDVVKXY----PFXIT-------------EDTFKFDNENTLVVG 88 (188)
T ss_dssp GSCCSEEEEECS-----HHHHHHHHHHHHHHHHHCSSEEEEEC----GGGCC-------------GGGGSSCCTTEEEEE
T ss_pred HCCCCEEEEEEE-----HHHHHHHHHHHHHHHHHHCCCEEEEE----HHHHE-------------ECCCCCCCCCCEEEE
T ss_conf 679997999997-----10899999999999998599989941----24530-------------033212468863887
Q ss_pred ECCC---HHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEE
Q ss_conf 8386---6589999999984988999983157765470899985211151
Q gi|254780936|r 119 FSGD---GCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMD 165 (182)
Q Consensus 119 vSGD---~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~ 165 (182)
+|-- ...+.+++.+|++|.+|+.++-.. ...|.+.||..+.
T Consensus 89 iS~sG~t~e~~~~~~~ak~~g~~vi~iT~~~------~s~l~~~ad~~l~ 132 (188)
T 3g68_A 89 VSQGGSSYSTYNAXKLAEDKGCKIASXAGCK------NALIDEISDYILT 132 (188)
T ss_dssp EESSSCCHHHHHHHHHHHHTTCEEEEEESST------TCGGGGGCSEECC
T ss_pred EECCCCCHHHHHHHHHHHHCCCCCCCCCCCC------CCCCHHHCCCCCC
T ss_conf 6078685899999987765386422355666------6620100365311
No 55
>>3c3j_A Putative tagatose-6-phosphate ketose/aldose isomerase; structural genomics, PSI, MCSG, protein structure initiative; 1.80A {Escherichia coli K12} (A:25-192)
Probab=68.14 E-value=7.1 Score=19.23 Aligned_cols=64 Identities=13% Similarity=0.038 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 2999999999421158899983866---5899999999849889999831577654708999852111518
Q gi|254780936|r 99 DVELAVDAFEQSEGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 99 Dv~laiD~~~~a~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
|.......+.....=|.+|++|--| +-+.+++.+|++|.++.++++-.. ....|.+.||..+.+
T Consensus 66 ~~~~~~~~~~~~~~~dlvI~iS~sG~t~~~~~~~~~ak~~g~~~~~i~it~~----~~s~la~~ad~~i~~ 132 (168)
T 3c3j_A 66 DLVTNPXDYLNPAHPLLLISFGRSGNSPESVAAVELANQFVPECYHLPITCN----EAGALYQNAINSDNA 132 (168)
T ss_dssp HHHHCHHHHCCTTSCEEEEEEESSSCCHHHHHHHHHHHHHCSSEEEEEEESC----TTSHHHHHHHTCTTB
T ss_pred HHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECC----CCCCCCCCCCCCCCC
T ss_conf 7650654346899885999984798965799999999980998149997457----788500022444333
No 56
>>2a3n_A Putative glucosamine-fructose-6-phosphate aminotransferase; 16423107, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Salmonella typhimurium LT2} (A:1-192)
Probab=68.11 E-value=8.7 Score=18.68 Aligned_cols=52 Identities=10% Similarity=0.116 Sum_probs=39.2
Q ss_pred HHCCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 421158899983866---5899999999849889999831577654708999852111518
Q gi|254780936|r 109 QSEGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 109 ~a~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
..+.=|.+|++|--+ +.+.+++.+++.|.+|+.++-.. ...|.+.||..+.+
T Consensus 99 ~~~~~d~vI~iS~sg~s~~~~~~~~~ak~~g~~iI~IT~~~------~s~l~~~ad~~l~~ 153 (192)
T 2a3n_A 99 RLNKDSVVITLSKSGDTKESVAIAEWCKAQGIRVVAITKNA------DSPLAQAATWHIPX 153 (192)
T ss_dssp TCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCT------TSHHHHTCSEEEEC
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHEEEEECC------CCCCCCCCCCCCCC
T ss_conf 78999979999689997679999999986301211333024------54200223321012
No 57
>>3fxa_A SIS domain protein; YP_013136.1, putative sugar-phosphate isomerase, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Listeria monocytogenes str} (A:)
Probab=67.87 E-value=8.8 Score=18.66 Aligned_cols=84 Identities=14% Similarity=0.118 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCH---HHHHHHHHHHHC
Q ss_conf 67775799988975595697534589537888654356532999999999421158899983866---589999999984
Q gi|254780936|r 59 QFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDG---CFTTLVAALQRK 135 (182)
Q Consensus 59 ~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~---Df~pli~~lr~~ 135 (182)
.+.....+...|...|..+..-. |...........+.=|.+|++|--| +.+.+++.+|++
T Consensus 56 s~~~a~~~~~~l~~~g~~~~~~~-----------------~~~~~~~~~~~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~ 118 (201)
T 3fxa_A 56 SGVAAKKLVHSFNCIERPAVFLT-----------------PSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTK 118 (201)
T ss_dssp HHHHHHHHHHHHHHTTCCEEECC-----------------HHHHTTTGGGGCCTTCEEEEECSSSCCHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCEEECC-----------------CHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99999999999985899448579-----------------3688988813889888899967999826899999999983
Q ss_pred CCEEEEEEEECCCCCCCHHHHHHHCCCCEE
Q ss_conf 988999983157765470899985211151
Q gi|254780936|r 136 VKKVTIVSTVLSDPSMASDQLRRQADYFMD 165 (182)
Q Consensus 136 Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~ 165 (182)
|.+|++++-.. ...|.+.||..+.
T Consensus 119 g~~vI~IT~~~------~s~l~~~ad~~i~ 142 (201)
T 3fxa_A 119 GSTLIGVTENP------DSVIAKEADIFFP 142 (201)
T ss_dssp TCEEEEEESCT------TSHHHHHCSEEEE
T ss_pred CCCEEEEECCC------CCCCCCCCCEEEE
T ss_conf 99189983699------9964235786686
No 58
>>3hu5_A Isochorismatase family protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.50A {Desulfovibrio vulgaris str} (A:)
Probab=67.76 E-value=8.8 Score=18.64 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=43.2
Q ss_pred HHCCCCEEEE--ECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCH--HHHHHHCC---CCEEHHHHHHHHCCCCC
Q ss_conf 4211588999--83866589999999984988999983157765470--89998521---11518997876225831
Q gi|254780936|r 109 QSEGLEHLVI--FSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMAS--DQLRRQAD---YFMDLAYLKNEIARDPD 178 (182)
Q Consensus 109 ~a~~~d~~iL--vSGD~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S--~~L~~~ad---~fi~l~~l~~~i~r~~~ 178 (182)
....++++|| ++.|.--.-.+..+..+|.+|+++.-.-+...... ..|..... ..++.+++...+++...
T Consensus 122 ~~~gv~~iii~G~~t~~CV~~Ta~~a~~~G~~V~v~~Da~a~~~~~~h~~al~~l~~~~~~vv~~~~~l~~l~~~~~ 198 (204)
T 3hu5_A 122 RRRGVDTLLVSGTQYPNCIRGTAVDAFALDYDVVVVTDACSARTPGVAESNINDXRAXGITCVPLTALDDVLARREG 198 (204)
T ss_dssp HHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSSHHHHHHHHHHHHHHTCEEECGGGHHHHHHC---
T ss_pred HHCCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHCC
T ss_conf 85599508999969761899999999978998999651348999999999999999839999879999999998328
No 59
>>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} (A:1-111,A:215-236)
Probab=67.55 E-value=8.9 Score=18.62 Aligned_cols=67 Identities=16% Similarity=0.252 Sum_probs=45.6
Q ss_pred HHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH-HHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 799988975595697534589537888654356532999999999-4211588999838665899999999849889999
Q gi|254780936|r 64 HPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFE-QSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 64 ~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~-~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
+.+...+...|+++...- +.... ..+.-. +.-+ ...++|.++++|++..-.+.+..+-+.|+.|.+-
T Consensus 13 ~~~~~~l~~~~~eivav~-----d~~~~-~a~~~~------~~e~l~~~~~DvVvi~t~~~~h~~~~~~al~~Gk~Vi~e 80 (133)
T 2dc1_A 13 KFLAEWLERNGFEIAAIL-----DVRGE-HEKMVR------GIDEFLQREMDVAVEAASQQAVKDYAEKILKAGIDLIVL 80 (133)
T ss_dssp HHHHHHHHHTTCEEEEEE-----CSSCC-CTTEES------SHHHHTTSCCSEEEECSCHHHHHHHHHHHHHTTCEEEES
T ss_pred HHHHHHHHHCCCEEEEEE-----ECCCC-CCCCCC------CHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 999999971998899999-----78964-044448------989982589719999368635799999987248889998
No 60
>>3cs3_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; 2.40A {Enterococcus faecalis V583} (A:102-231)
Probab=67.24 E-value=9 Score=18.58 Aligned_cols=99 Identities=8% Similarity=-0.133 Sum_probs=63.2
Q ss_pred HHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH---
Q ss_conf 99998517929999997306887314677757999889755956975345895378886543565329999999994---
Q gi|254780936|r 33 LLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ--- 109 (182)
Q Consensus 33 L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~--- 109 (182)
+.+.+.+.+.=. ..|.+.+.+......+.+.|.++++..|..+...... - ........+...
T Consensus 8 a~~~L~~~G~r~--i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~ 72 (130)
T 3cs3_A 8 AIEQFVNVGSKK--VLLLSGPEKGYDSQERLAVSTRELTRFGIPYEIIQGD------------F-TEPSGYAAAKKILSQ 72 (130)
T ss_dssp HHHHHHHTTCSC--EEEEECCTTSHHHHHHHHHHHHHHHHTTCCEEEEECC------------S-SHHHHHHHHHHHTTS
T ss_pred HHHHCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC------------C-CHHHHHHHHHHHHHC
T ss_conf 332101222345--4334578666233432268999999849974134124------------5-267788877776413
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHCCCEE----EEEEEEC
Q ss_conf 211588999838665899999999849889----9998315
Q gi|254780936|r 110 SEGLEHLVIFSGDGCFTTLVAALQRKVKKV----TIVSTVL 146 (182)
Q Consensus 110 a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V----~v~~~~~ 146 (182)
...--++++++.|.-...++..+++.|++| .|+++..
T Consensus 73 ~~~~~~aii~~~d~~a~~~l~~l~~~g~~vP~di~vv~fdd 113 (130)
T 3cs3_A 73 PQTEPVDVFAFNDEMAIGVYKYVAETNYQMGKDIRIIGFDN 113 (130)
T ss_dssp CCCSSEEEEESSHHHHHHHHHHHTTSSCCBTTTEEEECSSC
T ss_pred CCCCCEEEEECHHHHCCCCCCCCCCCCCCCCCCEECCCCCC
T ss_conf 68986278752245404530024233445784120345688
No 61
>>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B* (A:1-104,A:238-280)
Probab=67.10 E-value=9.1 Score=18.56 Aligned_cols=70 Identities=14% Similarity=0.079 Sum_probs=52.3
Q ss_pred HHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH--HCCCCEEEEECCCHH-HHHHHHHHHHCCCEE
Q ss_conf 57999889755956975345895378886543565329999999994--211588999838665-899999999849889
Q gi|254780936|r 63 LHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ--SEGLEHLVIFSGDGC-FTTLVAALQRKVKKV 139 (182)
Q Consensus 63 ~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~--a~~~d~~iLvSGD~D-f~pli~~lr~~Gk~V 139 (182)
...+.+.++..|+.+.... -.+-|.....+.++. ++++|.+|+.+.|.+ ..++++++++.|..|
T Consensus 19 ~~gie~~a~~~G~~v~i~~-------------~~~~d~~~q~~~Le~li~~~vDGIIi~~~d~~~~~~~i~~l~~~gIPV 85 (147)
T 2h3h_A 19 EQGVKAAGKALGVDTKFFV-------------PQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALEMGIPV 85 (147)
T ss_dssp HHHHHHHHHHHTCEEEEEC-------------CSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHCCEEEEEE-------------CCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCE
T ss_conf 9999999998199799997-------------999999999999999997699999997250344248999987435624
Q ss_pred EEEEEE
Q ss_conf 999831
Q gi|254780936|r 140 TIVSTV 145 (182)
Q Consensus 140 ~v~~~~ 145 (182)
.++...
T Consensus 86 V~vd~~ 91 (147)
T 2h3h_A 86 VTLDTD 91 (147)
T ss_dssp EEESSC
T ss_pred EEEECC
T ss_conf 999335
No 62
>>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A* (A:217-375)
Probab=66.75 E-value=9.2 Score=18.52 Aligned_cols=49 Identities=2% Similarity=0.073 Sum_probs=33.8
Q ss_pred CCCCEEEEEC--CCH-HHH-HHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEE
Q ss_conf 1158899983--866-589-999999984988999983157765470899985211151
Q gi|254780936|r 111 EGLEHLVIFS--GDG-CFT-TLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMD 165 (182)
Q Consensus 111 ~~~d~~iLvS--GD~-Df~-pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~ 165 (182)
+.=|.+|++| |.+ +.+ .+++.++++|.+|++++-.. ...|.+.||..+.
T Consensus 62 ~~~d~vi~is~~g~t~e~~~~~~~~~k~~g~~vi~it~~~------~s~l~~~~d~~l~ 114 (159)
T 2zj3_A 62 DKLMPVIMIIMRDHTYAKCQNALQQVVARQGRPVVICDKE------DTETIKNTKRTIK 114 (159)
T ss_dssp STTSCEEEEECSSTTHHHHHHHHHHHHHTTCCCEEEEETT------CHHHHHHCSSEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCC------CHHHHHCCCEEEE
T ss_conf 7997189997573147889999999997799689998787------2233314570898
No 63
>>2iks_A DNA-binding transcriptional dual regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.85A {Escherichia coli K12} (A:122-251)
Probab=66.39 E-value=9.4 Score=18.47 Aligned_cols=100 Identities=14% Similarity=0.076 Sum_probs=65.8
Q ss_pred HHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH---H
Q ss_conf 9999851792999999730688731467775799988975595697534589537888654356532999999999---4
Q gi|254780936|r 33 LLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFE---Q 109 (182)
Q Consensus 33 L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~---~ 109 (182)
+.+.+.+.+.-.. .|.+.+.+......+...|.+++...+..+..... ...+..-...+.. .
T Consensus 8 a~~~L~~~G~~~i--~~i~~~~~~~~~~~r~~gf~~al~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 72 (130)
T 2iks_A 8 LAEELRKFPAETV--LYLGALPELSVSFLREQGFRTAWKDDPREVHFLYA-------------NSYEREAAAQLFEKWLE 72 (130)
T ss_dssp HHHHHHTSCCSSE--EEEEECTTSHHHHHHHHHHHHHHTTCCCCEEEEEE-------------SSSCHHHHHHHHHHHTT
T ss_pred CCCHHHHHCCCCC--CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC-------------CCHHHHHHHHHHHHHHH
T ss_conf 3101222023332--22345555443100125555555522343221223-------------32136777788877776
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHCCCE----EEEEEEECC
Q ss_conf 21158899983866589999999984988----999983157
Q gi|254780936|r 110 SEGLEHLVIFSGDGCFTTLVAALQRKVKK----VTIVSTVLS 147 (182)
Q Consensus 110 a~~~d~~iLvSGD~Df~pli~~lr~~Gk~----V~v~~~~~~ 147 (182)
.....+.++++.|.....++..++++|++ |.|+++...
T Consensus 73 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~vP~di~vigfd~~ 114 (130)
T 2iks_A 73 THPXPQALFTTSFALLQGVXDVTLRRDGKLPSDLAIATFGDN 114 (130)
T ss_dssp TSCCCSEEEESSHHHHHHHHHHHHHHHSSCCSSCEEEEESCC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCH
T ss_conf 326850443101577766666654100257751578721884
No 64
>>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes str} (A:27-183)
Probab=66.34 E-value=9.4 Score=18.47 Aligned_cols=108 Identities=8% Similarity=0.009 Sum_probs=63.2
Q ss_pred HHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999985179299999973068873146777579998897559569753458953788865435653299999999942
Q gi|254780936|r 31 RKLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS 110 (182)
Q Consensus 31 ~~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a 110 (182)
..+-.....-....+.++|+. ...+.....+...|.+.|..+..-. |...........
T Consensus 12 ~~~~~~~~~i~~a~~I~i~G~-----G~S~~~a~~~~~~l~~~~~~~~~~~-----------------~~~~~~~~~~~~ 69 (157)
T 2aml_A 12 NAEKLESLVKNGAKEWLILAT-----GSSLNAAQSAKYYIENLADVRITIE-----------------EPFNHLYYEKLS 69 (157)
T ss_dssp HHHHHHTTCTTCCCEEEEEEC-----HHHHHHHHHHHHHHHHHSSCEEEEE-----------------CHHHHHHHCCCC
T ss_pred HHHHHHHHHHCCCCEEEEEEE-----CHHHHHHHHHHHHHHHHHCCCEEEE-----------------CHHHHHCCCCCC
T ss_conf 599999998668998999996-----3599999999999999749986996-----------------525653146655
Q ss_pred CCCCEEEEECCCH---HHHHHHHHHHHCC-CEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 1158899983866---5899999999849-889999831577654708999852111518
Q gi|254780936|r 111 EGLEHLVIFSGDG---CFTTLVAALQRKV-KKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 111 ~~~d~~iLvSGD~---Df~pli~~lr~~G-k~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
..=|.+|++|--+ +.+.+++.++++| ..|+.++-. ....|.+.||..+.+
T Consensus 70 ~~~dl~I~iS~sG~~~~~~~~~~~~~~~g~~~vi~iT~~------~~s~l~~~ad~~l~~ 123 (157)
T 2aml_A 70 SHLDLVIGISQSGQSTSTISALERVKKEASVPVVALTSD------VTSEIAEFADITLDI 123 (157)
T ss_dssp TTCCEEEEECSSSCBHHHHHHHHHHHHHCCCCEEEEESC------TTSGGGGGCSEEEEC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCC------CHHHHHHHCCCCCCC
T ss_conf 567269998568996578999997530452369874487------213435424644224
No 65
>>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} (A:)
Probab=65.78 E-value=9.7 Score=18.40 Aligned_cols=93 Identities=9% Similarity=-0.094 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHH--------------HHHHCCCCEEEEECCCH
Q ss_conf 4677757999889755956975345895378886543565329999999--------------99421158899983866
Q gi|254780936|r 58 QQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDA--------------FEQSEGLEHLVIFSGDG 123 (182)
Q Consensus 58 ~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~--------------~~~a~~~d~~iLvSGD~ 123 (182)
..+.....+...|.+.|.......-- .....+..+.... ......=|.+|++|.-+
T Consensus 55 ~S~~~a~~~~~~l~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG 124 (199)
T 1x92_A 55 GSAGDAQHFSSELLNRFERERPSLPA----------VALTTDSSTITSIANDYSYNEVFSKQIRALGQPGDVLLAISTSG 124 (199)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCCCCCE----------EETTCCHHHHHHHHHHTCGGGTTHHHHHHHCCTTCEEEEECSSS
T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHH----------HHCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 60888867877753332235200334----------30222101255530545799999999998457883899996588
Q ss_pred ---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf ---5899999999849889999831577654708999852111518
Q gi|254780936|r 124 ---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 124 ---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
+.+.+++.+|++|.+++.++-. ....|.+.||..+.+
T Consensus 125 ~t~~~~~~~~~ak~~g~~~i~iT~~------~~s~L~~~ad~~l~~ 164 (199)
T 1x92_A 125 NSANVIQAIQAAHDREMLVVALTGR------DGGGMASLLLPEDVE 164 (199)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEECT------TCHHHHHHCCTTCEE
T ss_pred CCCCHHHHHHHHHHHCCEEEEEEEC------CCCCHHHHCCCCCEE
T ss_conf 8530168999998626569999916------884176505678889
No 66
>>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} (A:)
Probab=65.68 E-value=9.7 Score=18.39 Aligned_cols=124 Identities=10% Similarity=-0.063 Sum_probs=67.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHCC----CEEEEEEEEE-ECCCCCCCCCCCCCHHHHHHHHHH----HHCCCCEEEE
Q ss_conf 973068873146777579998897559----5697534589-537888654356532999999999----4211588999
Q gi|254780936|r 48 YYTTVVGDPEQQFSPLHPLLDWLHYNG----FQVVAKVAKE-FTENCGRKRVKSSMDVELAVDAFE----QSEGLEHLVI 118 (182)
Q Consensus 48 ~y~~~~~~~~~~~~~~~~~~~~l~~~g----~~v~~~~~~~-~~~~~~~~~~kk~~Dv~laiD~~~----~a~~~d~~iL 118 (182)
.|.+-+--............++|++.+ +++.. |... ...........+..+...+..+.+ .....|.+|.
T Consensus 6 iYlAgp~f~~~~~~~~~~~~~~l~~~~~~~~~~v~~-P~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~via 84 (157)
T 1f8y_A 6 IYFGAGWFTDRQNKAYKEAMEALKENPTIDLENSYV-PLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIMLG 84 (157)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHHHHCTTBCCTTSBC-GGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEEEE
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCE-ECCCCCCCEECCCCHHHHHHHHEEEEEECCCCCCCEECCEEEE
T ss_conf 896021110233288999999875299523323601-0465426457046877764232144443275577200557898
Q ss_pred EC--CCHHHHHH--HHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEHHHHHHH
Q ss_conf 83--86658999--99999849889999831577654708999852111518997876
Q gi|254780936|r 119 FS--GDGCFTTL--VAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDLAYLKNE 172 (182)
Q Consensus 119 vS--GD~Df~pl--i~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l~~l~~~ 172 (182)
+= +..|---+ +-.+..+||.|+++....-.....+.-|...+..|.+++++...
T Consensus 85 ~ld~~~~d~Gt~~EiG~A~a~gkpvi~~~~d~r~~~~~n~mi~~~~~~~~~~~~l~~~ 142 (157)
T 1f8y_A 85 VYIPDEEDVGLGMELGYALSQGKYVLLVIPDEDYGKPINLMSWGVSDNVIKMSQLKDF 142 (157)
T ss_dssp ECCGGGCCHHHHHHHHHHHHTTCEEEEEECGGGTTSCBCHHHHHHCSEEEEGGGTTTC
T ss_pred EECCCHHHCCCHHHHHHHHCCCCEEEEEECCHHCCCCEEEEEECCCCCEEEHHHHCCC
T ss_conf 7549756525006544444078489999360323983056641244230023342036
No 67
>>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar binding protein, DNAA binding protein; 1.85A {Escherichia coli} (A:)
Probab=65.30 E-value=9.9 Score=18.34 Aligned_cols=101 Identities=8% Similarity=-0.089 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEE-EEECCCCC---CCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCH---HHHHHHHH
Q ss_conf 677757999889755956975345-89537888---654356532999999999421158899983866---58999999
Q gi|254780936|r 59 QFSPLHPLLDWLHYNGFQVVAKVA-KEFTENCG---RKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDG---CFTTLVAA 131 (182)
Q Consensus 59 ~~~~~~~~~~~l~~~g~~v~~~~~-~~~~~~~~---~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~---Df~pli~~ 131 (182)
.+.....+...|.+.|........ ....+... ........|-............=|.+|++|--| +-+.+++.
T Consensus 52 S~~~a~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~t~~~~~~~~~ 131 (196)
T 2yva_A 52 SAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEA 131 (196)
T ss_dssp HHHHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTSTTGGGHHHHHHHHHCCTTCEEEEECSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 17768778989998874134333210344552001111353027788999999862788479998447752025689999
Q ss_pred HHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEE
Q ss_conf 9984988999983157765470899985211151
Q gi|254780936|r 132 LQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMD 165 (182)
Q Consensus 132 lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~ 165 (182)
+|++|.+++.++-. ....|.+.||..+.
T Consensus 132 ak~~g~~~i~IT~~------~~s~l~~~sd~~l~ 159 (196)
T 2yva_A 132 AVTRDMTIVALTGY------DGGELAGLLGPQDV 159 (196)
T ss_dssp HHHTTCEEEEEECT------TCHHHHTTCCTTSE
T ss_pred HHHHCCEEEEEECC------CCCHHHHHCCCCCE
T ss_conf 99734818999825------88457762465888
No 68
>>3knz_A Putative sugar binding protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.50A {Salmonella enterica subsp} (A:34-182)
Probab=65.02 E-value=7.5 Score=19.07 Aligned_cols=108 Identities=13% Similarity=0.028 Sum_probs=60.2
Q ss_pred HHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 89999998517929999997306887314677757999889755956975345895378886543565329999999994
Q gi|254780936|r 30 YRKLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ 109 (182)
Q Consensus 30 ~~~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~ 109 (182)
+.++.+.+.. ....+.++++. ...+.....+...+...|..+.... |..........
T Consensus 5 i~~~v~~l~~-~~a~~I~~~G~-----G~S~~~a~~~~~~l~~~g~~~~~~~-----------------~~~~~~~~~~~ 61 (149)
T 3knz_A 5 LWRAAQALTE-RGVTRIILTGS-----GTSYHGALTARTFXQRWCALPVDVC-----------------WPFXLDDETLA 61 (149)
T ss_dssp HHHHHHHHHH-TTCCEEEEECC-----HHHHHHHHHHHHHHHHHHTSCEEEE-----------------CGGGCCHHHHH
T ss_pred HHHHHHHHHH-CCCCEEEEEEE-----CHHHHHHHHHHHHHHHHHCCCEEEE-----------------CHHHHCCCCCC
T ss_conf 9999999986-79998999995-----0799999999999999839987995-----------------57784077778
Q ss_pred HCCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 21158899983866---5899999999849889999831577654708999852111518
Q gi|254780936|r 110 SEGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 110 a~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
.+.-|.+|++|--+ ..+.+++.+|++|.+|+.++-.. ...|.+.||..+.+
T Consensus 62 ~~~~dlvI~iS~sg~t~~~~~~~~~ak~~g~~~i~iT~~~------~s~l~~~ad~~i~~ 115 (149)
T 3knz_A 62 RSGKALVVGISQGGGSLSTLAAXERARNVGHITASXAGVA------PATIDRAADYILTV 115 (149)
T ss_dssp HSCSEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSS------SCGGGGGCSEECCC
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCC------CCHHHHCCCCHHCC
T ss_conf 9998189999389388899999987665202202578878------62766304500114
No 69
>>2rjo_A Twin-arginine translocation pathway signal protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: GAL; 2.05A {Burkholderia phytofirmans psjn} (A:1-117,A:253-287)
Probab=64.91 E-value=10 Score=18.29 Aligned_cols=69 Identities=14% Similarity=0.052 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--CCCCEEEEECC--C-HHHHHHHHHHHHCC
Q ss_conf 7579998897559569753458953788865435653299999999942--11588999838--6-65899999999849
Q gi|254780936|r 62 PLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS--EGLEHLVIFSG--D-GCFTTLVAALQRKV 136 (182)
Q Consensus 62 ~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a--~~~d~~iLvSG--D-~Df~pli~~lr~~G 136 (182)
-.....+.+.+.|+.+...+ ..-|.....+.++.. +++|-+||++. | .+..++++++++.|
T Consensus 23 ii~gi~~~a~~~Gy~lii~~--------------~~~d~~~~~~~i~~l~~~~vDGIIi~~~~~~~~~~~~~i~~l~~~g 88 (152)
T 2rjo_A 23 FNKGAQSFAKSVGLPYVPLT--------------TEGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIVEACSKAG 88 (152)
T ss_dssp HHHHHHHHHHHHTCCEEEEE--------------CTTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCEEEEEE--------------CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCC
T ss_conf 99999999997299899993--------------8999999999999999659998999836642100147788999739
Q ss_pred CEEEEEEE
Q ss_conf 88999983
Q gi|254780936|r 137 KKVTIVST 144 (182)
Q Consensus 137 k~V~v~~~ 144 (182)
..|+++.-
T Consensus 89 IPvV~id~ 96 (152)
T 2rjo_A 89 AYVTTIWN 96 (152)
T ss_dssp CEEEEESC
T ss_pred CEEEEECC
T ss_conf 87898415
No 70
>>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} (A:)
Probab=64.76 E-value=10 Score=18.28 Aligned_cols=101 Identities=15% Similarity=0.096 Sum_probs=60.7
Q ss_pred HHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 89999998517929999997306887314677757999889755956975345895378886543565329999999994
Q gi|254780936|r 30 YRKLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ 109 (182)
Q Consensus 30 ~~~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~ 109 (182)
+.++.+.+.+.. +.+.++ ....+..-+.+...|...|+.+.... +.......++
T Consensus 27 ~~~i~~~i~~a~---~I~~~G-----~G~S~~~a~~~~~~l~~~g~~~~~~~-----~~~~~~~~~~------------- 80 (186)
T 1m3s_A 27 ADQLADHILSSH---QIFTAG-----AGRSGLMAKSFAMRLMHMGFNAHIVG-----EILTPPLAEG------------- 80 (186)
T ss_dssp HHHHHHHHHHCS---CEEEEC-----SHHHHHHHHHHHHHHHHTTCCEEETT-----STTCCCCCTT-------------
T ss_pred HHHHHHHHHCCC---EEEEEE-----CCHHHHHHHHHHHHHHHCCCCCCCCC-----HHHCCCCCCC-------------
T ss_conf 999999997499---599997-----87899999999999985099867777-----2113568899-------------
Q ss_pred HCCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 21158899983866---5899999999849889999831577654708999852111518
Q gi|254780936|r 110 SEGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 110 a~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
|.+|++|--+ +.+.+++.+|++|.+++.++-.. ...|.+.||..+.+
T Consensus 81 ----~~vI~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~------~s~l~~~ad~~l~~ 130 (186)
T 1m3s_A 81 ----DLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINP------ESSIGKQADLIIRM 130 (186)
T ss_dssp ----CEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCT------TSHHHHHCSEEEEC
T ss_pred ----CEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCC------CCHHHHHCCEEEEE
T ss_conf ----889998189986467899999998699699998999------99789969999996
No 71
>>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3} (A:1-193)
Probab=63.99 E-value=10 Score=18.19 Aligned_cols=98 Identities=9% Similarity=-0.171 Sum_probs=54.0
Q ss_pred CEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 92999999730688731467775799988975595697534589537888654356532999999999421158899983
Q gi|254780936|r 41 AIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFS 120 (182)
Q Consensus 41 ~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvS 120 (182)
....+.+.++. ...+..-..+...|...|..+.... .|.............=|.+|++|
T Consensus 41 ~~a~~I~i~G~-----G~S~~~a~~~~~~l~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~d~vI~iS 99 (193)
T 3fj1_A 41 RDPSFVATVAR-----GSSDHVCTYLSYAAELLLGLPVASL----------------GPSVASVYDARLRLDRALCLAVS 99 (193)
T ss_dssp HCCSEEEEECC-----THHHHHHHHHHHHHHHHHCCCEEEC----------------CTHHHHTTCCCCCCTTEEEEEEE
T ss_pred CCCCEEEEEEC-----HHHHHHHHHHHHHHHHHHCCCEEEE----------------CHHHHHHCCCCCCCCCEEEEEEE
T ss_conf 69878999951-----2899999999999999849985995----------------15255441366788984999997
Q ss_pred CCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEE
Q ss_conf 866---589999999984988999983157765470899985211151
Q gi|254780936|r 121 GDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMD 165 (182)
Q Consensus 121 GD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~ 165 (182)
-=+ ..+.+++.+|++|.+|++++-.. ...|.+.||..+.
T Consensus 100 ~sG~t~~~~~~~~~ak~~g~~vi~iT~~~------~s~l~~~ad~~i~ 141 (193)
T 3fj1_A 100 QSGKSPDIVAXTRNAGRDGALCVALTNDA------ASPLAGVSAHTID 141 (193)
T ss_dssp SSSCCHHHHHHHHHHHHTTCEEEEEESCT------TSHHHHTSSEEEE
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCC------CCCCCCCCCCCCC
T ss_conf 78997489999999877599499984479------9870103463310
No 72
>>3i45_A Twin-arginine translocation pathway signal protein; structural genomics, protein structure initiative; 1.36A {Rhodospirillum rubrum atcc 11170} (A:125-260,A:324-387)
Probab=63.91 E-value=10 Score=18.18 Aligned_cols=110 Identities=13% Similarity=-0.055 Sum_probs=60.9
Q ss_pred HHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH-
Q ss_conf 9999985179299999973068873146777579998897559569753458953788865435653299999999942-
Q gi|254780936|r 32 KLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS- 110 (182)
Q Consensus 32 ~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a- 110 (182)
.+.+++...+--..+..+. +...-......|.+.+...|.++......... -+..|.. --+....
T Consensus 8 ala~~l~~~g~kkVaII~~----d~~yG~~~~~~f~~~l~~~G~~V~~~~~i~~~--------~~~~d~~--~~i~kik~ 73 (200)
T 3i45_A 8 MLAAEAAKLPITRWATIAP----NYEYGQSAVARFKELLLAARPEVTFVAEQWPA--------LYKLDAG--PTVQALQQ 73 (200)
T ss_dssp HHHHHHTTSSCCEEEEECC----SSHHHHHHHHHHHHHHHHHCTTCEEEEEECCC--------TTCCCHH--HHHHHHHH
T ss_pred HHHHHHHHCCCCEEEECCC----CCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEC--------CCCCHHH--HHHHHHHH
T ss_conf 9999988628717854478----96788999998887775236613688766402--------6651167--89888886
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEEEECCCCCCCHHHHHHH
Q ss_conf 115889998386658999999998498--8999983157765470899985
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVK--KVTIVSTVLSDPSMASDQLRRQ 159 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk--~V~v~~~~~~~~~~~S~~L~~~ 159 (182)
.+.|.+++++...|...+++.+++.|. ++.+++.. ...+..+...
T Consensus 74 a~pdvVi~~~~~~~a~~~ikqa~~~Gl~~~~~ii~~~----~~~~~~l~~~ 120 (200)
T 3i45_A 74 AEPEGLFNVLFGADLPKFVREGRVRGLFAGRQVVSML----TGEPEYLNPL 120 (200)
T ss_dssp TCCSEEEECCCTTHHHHHHHHHHHHTSSTTCEEEEEE----EESHHHHGGG
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEC----CCCHHHHHHH
T ss_conf 0983899993337899999999981887676034302----4570443321
No 73
>>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium LT2} (A:108-243,A:302-316)
Probab=62.98 E-value=11 Score=18.07 Aligned_cols=85 Identities=8% Similarity=-0.090 Sum_probs=57.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH---CCCCEEEEECCCHHHHH
Q ss_conf 068873146777579998897559569753458953788865435653299999999942---11588999838665899
Q gi|254780936|r 51 TVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS---EGLEHLVIFSGDGCFTT 127 (182)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a---~~~d~~iLvSGD~Df~p 127 (182)
+..........+...|.++|+..|..+...... ....+..-+...+... ..--.+|++++|.-..-
T Consensus 28 ~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g 96 (151)
T 1tjy_A 28 YSSPTVTDQNQWVKEAKAKISQEHPGWEIVTTQ-----------FGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPA 96 (151)
T ss_dssp ESCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEE-----------ECTTCHHHHHHHHHHHHHHCSSCCEEEECSTTHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHH-----------CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHH
T ss_conf 246764201356666777765035533201233-----------021467888999999873289851999788689999
Q ss_pred HHHHHHHCCCE-EEEEEEEC
Q ss_conf 99999984988-99998315
Q gi|254780936|r 128 LVAALQRKVKK-VTIVSTVL 146 (182)
Q Consensus 128 li~~lr~~Gk~-V~v~~~~~ 146 (182)
+++.+++.|.. +.++++..
T Consensus 97 ~~~al~~~g~~~i~ivgfD~ 116 (151)
T 1tjy_A 97 AAQAAENLKRNNLAIVGFST 116 (151)
T ss_dssp HHHHHHHTTCCSCEEEEBCC
T ss_pred HHHHHHHCCCCCCEEEEECC
T ss_conf 99999976999857999857
No 74
>>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon, hyperthermophIle, PGI family; 1.16A {Pyrobaculum aerophilum str} (A:17-160)
Probab=62.94 E-value=8.5 Score=18.75 Aligned_cols=79 Identities=11% Similarity=-0.027 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCH---HHHHHHHHHHH
Q ss_conf 467775799988975595697534589537888654356532999999999421158899983866---58999999998
Q gi|254780936|r 58 QQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDG---CFTTLVAALQR 134 (182)
Q Consensus 58 ~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~---Df~pli~~lr~ 134 (182)
......+.|...|...|..+..-. +.......++ |.+|++|-.+ +-+.+++.+|+
T Consensus 31 ~S~~~a~~~~~~l~~~g~~~~~~~-----~~~~~~~~~~-----------------dvvI~iS~sg~~~~~~~~~~~ak~ 88 (144)
T 1tzb_A 31 GSGVVADLIRDFSLTWNWEVEVIA-----VKDYFLKARD-----------------GLLIAVSYSGNTIETLYTVEYAKR 88 (144)
T ss_dssp HHHHHHHHHHHHHHHTTCSSEEEE-----ECSSCCCCSS-----------------SEEEEECSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEE-----ECCCCCCCCC-----------------EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999999999999986699853897-----5667789988-----------------089998489587889999999975
Q ss_pred CCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 49889999831577654708999852111518
Q gi|254780936|r 135 KVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 135 ~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
+|..++.++- ...|.+.||..+.+
T Consensus 89 ~g~~ii~iT~--------~s~l~~~ad~~i~~ 112 (144)
T 1tzb_A 89 RRIPAVAITT--------GGRLAQMGVPTVIV 112 (144)
T ss_dssp TTCCEEEEES--------STTGGGSSSCEEEC
T ss_pred CCCEEECCCC--------CCHHHHHHCCCCEE
T ss_conf 1870420689--------98599860345357
No 75
>>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A (A:)
Probab=62.70 E-value=11 Score=18.04 Aligned_cols=102 Identities=12% Similarity=-0.031 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHCCCEEEE-EEEEEECCCCCCC--CCCCCCHHHHHHHHHHHHCCCCEEEEECCCH---HHHHHHHHH
Q ss_conf 677757999889755956975-3458953788865--4356532999999999421158899983866---589999999
Q gi|254780936|r 59 QFSPLHPLLDWLHYNGFQVVA-KVAKEFTENCGRK--RVKSSMDVELAVDAFEQSEGLEHLVIFSGDG---CFTTLVAAL 132 (182)
Q Consensus 59 ~~~~~~~~~~~l~~~g~~v~~-~~~~~~~~~~~~~--~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~---Df~pli~~l 132 (182)
.+.....+...|.+.|..+.. .+.....+..... ..+...|.............-|.+|++|--| +-+.+++.+
T Consensus 75 S~~~a~~~~~~l~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~i~iS~sG~t~~~~~~~~~a 154 (212)
T 2i2w_A 75 SHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVGNDFGFNDIFSRYVEAVGREGDVLLGISTSGNSANVIKAIAAA 154 (212)
T ss_dssp HHHHHHHHHHHHHHHHCTTSSSCSEEECCCTTCGGGGSCCCSCSSHHHHHHHHHCCTTCEEEEECSSSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCCCCCHHEECCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 32679899998628853346521201057702566764255578898888886167786799970685200224689999
Q ss_pred HHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 9849889999831577654708999852111518
Q gi|254780936|r 133 QRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 133 r~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
+++|.+++.++-.. ...|.+.||..+.+
T Consensus 155 k~~g~~ii~IT~~~------~s~la~~ad~~l~v 182 (212)
T 2i2w_A 155 REKGMKVITLTGKD------GGKMAGTADIEIRV 182 (212)
T ss_dssp HHHTCEEEEEEETT------CGGGTTCSSEEEEE
T ss_pred HHCCCEEEEEECCC------CCCHHHHCCEEEEC
T ss_conf 98799699995799------86055629999986
No 76
>>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} (A:1-163,A:297-318)
Probab=62.41 E-value=11 Score=18.01 Aligned_cols=74 Identities=9% Similarity=0.036 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH--HCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 14677757999889755956975345895378886543565329999999994--2115889998386658999999998
Q gi|254780936|r 57 EQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ--SEGLEHLVIFSGDGCFTTLVAALQR 134 (182)
Q Consensus 57 ~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~--a~~~d~~iLvSGD~Df~pli~~lr~ 134 (182)
..-..-.+.+...+.+.|+.+..... . -|......+++. ..++|-+||++...+..++.+.++.
T Consensus 76 ~f~~~ii~gi~~~~~~~gy~~~i~~~------------~--~d~~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~~~~l~~ 141 (185)
T 3dbi_A 76 IYFSELLFHAARXAEEKGRQLLLADG------------K--HSAEEERQAIQYLLDLRCDAIXIYPRFLSVDEIDDIIDA 141 (185)
T ss_dssp THHHHHHHHHHHHHHHTTCEEEEEEC------------T--TSHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCEEEECCC------------C--CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 13999999999999971847873257------------8--877889999999995598879975887775889999985
Q ss_pred CCCEEEEEEE
Q ss_conf 4988999983
Q gi|254780936|r 135 KVKKVTIVST 144 (182)
Q Consensus 135 ~Gk~V~v~~~ 144 (182)
.|..|.++.-
T Consensus 142 ~~iPvV~id~ 151 (185)
T 3dbi_A 142 HSQPIXVLNR 151 (185)
T ss_dssp CSSCEEEESS
T ss_pred CCCCEEEECC
T ss_conf 4997899367
No 77
>>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii} (A:)
Probab=62.22 E-value=11 Score=17.99 Aligned_cols=44 Identities=7% Similarity=-0.120 Sum_probs=18.4
Q ss_pred HHHHHHHHHCCEEEEEEE-EECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 999999851792999999-730688731467775799988975595697534
Q gi|254780936|r 31 RKLLKAFRSRAIVIRAYY-YTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKV 81 (182)
Q Consensus 31 ~~L~~~l~~~~~l~~~~~-y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~ 81 (182)
..++..+.+.+.-+.+.. ..+...+... -.......|+.....+
T Consensus 20 ~~ll~ll~~~~~~v~~v~~d~g~~~~~~~-------~~~~~~~l~~~~~~~~ 64 (203)
T 3k32_A 20 SLSAVILKKLGYNPHLITINFGVIPSYKL-------AEETAKILGFKHKVIT 64 (203)
T ss_dssp HHHHHHHHHTTEEEEEEEEECSSSCTTHH-------HHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCHHHH-------HHHHHHHHCCCEEEEE
T ss_conf 99999999729976999967998637999-------9999998469629997
No 78
>>3ksm_A ABC-type sugar transport system, periplasmic component; PSI- II, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis kctc 2396} (A:107-242)
Probab=62.20 E-value=11 Score=17.98 Aligned_cols=102 Identities=8% Similarity=-0.063 Sum_probs=67.1
Q ss_pred HHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH-
Q ss_conf 9999985179299999973068873146777579998897559569753458953788865435653299999999942-
Q gi|254780936|r 32 KLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS- 110 (182)
Q Consensus 32 ~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a- 110 (182)
.+.+.+.+.+.-.. .+.+.+........+...|.+++...|....... ...+.+..-+..++...
T Consensus 11 ~~~~~l~~~G~~~i--~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l 76 (136)
T 3ksm_A 11 ALLATLDLSKERNI--ALLRLRAGNASTDQREQGFLDVLRKHDKIRIIAA------------PYAGDDRGAARSEXLRLL 76 (136)
T ss_dssp HHHHHSCTTSCEEE--EECBCCTTCHHHHHHHHHHHHHHTTCTTEEEEEC------------CBCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCEE--EEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEE------------EEHHHHHHHHHHHHHHHH
T ss_conf 99987322798479--9953767764077898779999986798642021------------101022588999988764
Q ss_pred --CCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEEEECC
Q ss_conf --115889998386658999999998498--8999983157
Q gi|254780936|r 111 --EGLEHLVIFSGDGCFTTLVAALQRKVK--KVTIVSTVLS 147 (182)
Q Consensus 111 --~~~d~~iLvSGD~Df~pli~~lr~~Gk--~V~v~~~~~~ 147 (182)
..--++|+++.|.--..++..+++.|+ .+.|+++...
T Consensus 77 ~~~~~~~ai~~~~d~~a~g~~~al~~~g~p~di~v~g~d~~ 117 (136)
T 3ksm_A 77 KETPTIDGLFTPNESTTIGALVAIRQSGXSKQFGFIGFDQT 117 (136)
T ss_dssp HHCSCCCEEECCSHHHHHHHHHHHHHTTCTTSSEEEEESCC
T ss_pred CCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 14887635662571999999999997599999289987898
No 79
>>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A (A:1-12,A:87-222)
Probab=61.73 E-value=11 Score=17.93 Aligned_cols=43 Identities=16% Similarity=0.089 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHC-CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 2999999999421-158899983866589999999984988999983
Q gi|254780936|r 99 DVELAVDAFEQSE-GLEHLVIFSGDGCFTTLVAALQRKVKKVTIVST 144 (182)
Q Consensus 99 Dv~laiD~~~~a~-~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~ 144 (182)
|..+...+++... ..+.+ ++=||+- -=+..+++.|.+++.+..
T Consensus 67 ~p~~~~~~~~~~~~~~~~~-i~VGD~~--~Di~aA~~aG~~~i~v~~ 110 (148)
T 2nyv_A 67 SPTPVLKTLEILGEEPEKA-LIVGDTD--ADIEAGKRAGTKTALALW 110 (148)
T ss_dssp TTHHHHHHHHHHTCCGGGE-EEEESSH--HHHHHHHHHTCEEEEETT
T ss_pred CCCCHHHHHHHCCCCHHHC-EEEECCH--HHHHHHHHCCCCEEEECC
T ss_conf 2210267898739985782-7870558--769999982991999837
No 80
>>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} (A:244-449)
Probab=61.47 E-value=12 Score=17.90 Aligned_cols=92 Identities=9% Similarity=-0.048 Sum_probs=51.1
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH---CCCCEEEEEC
Q ss_conf 9999973068873146777579998897559569753458953788865435653299999999942---1158899983
Q gi|254780936|r 44 IRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS---EGLEHLVIFS 120 (182)
Q Consensus 44 ~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a---~~~d~~iLvS 120 (182)
.+.+.|+. ......-..+...|...|..+.... | ..++.... ..=|.+|++|
T Consensus 50 ~~I~~~G~-----G~S~~~a~~~~~~l~~~g~~~~~~~-----------------~---~~~~~~~~~~~~~~dlvI~iS 104 (206)
T 2bpl_A 50 EHIQILAC-----GTSYNSGMVSRYWFESLAGIPCDVE-----------------I---ASEFRYRKSAVRRNSLMITLS 104 (206)
T ss_dssp CEEEEEEC-----HHHHHHHHHHHHHHHHHSCCCEEEE-----------------E---HHHHTTSCCCCCTTEEEEEEE
T ss_pred CCEEEEEE-----CCHHHHHHHHHHHHHHHCCCCEEEE-----------------E---CCCCCCCCCCCCCCCEEEEEC
T ss_conf 13589985-----6547789999999999709874999-----------------7---401311245568985899973
Q ss_pred CCH---HHHHHHHHHHHCC-CEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 866---5899999999849-889999831577654708999852111518
Q gi|254780936|r 121 GDG---CFTTLVAALQRKV-KKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 121 GD~---Df~pli~~lr~~G-k~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
--| +.+.+++.++++| ..|++++-. ....|.+.||..+..
T Consensus 105 ~sG~t~~~~~~~~~ak~~g~~~vi~iT~~------~~s~l~~~~d~~l~~ 148 (206)
T 2bpl_A 105 QSGETADTLAGLRLSKELGYLGSLAICNV------PGSSLVRESDLALMT 148 (206)
T ss_dssp SSSCCHHHHHHHHHHHHTTCSEEEEEESS------TTCHHHHHSSEEEEC
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECC------CCCHHHHHCCEEEEE
T ss_conf 78873889999998875387559999746------997787741620677
No 81
>>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} (A:1-162,A:293-349)
Probab=61.34 E-value=12 Score=17.89 Aligned_cols=71 Identities=13% Similarity=0.069 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH--HCCCCEEEEECCCHHHHHHHHHHHHCCCE
Q ss_conf 7757999889755956975345895378886543565329999999994--21158899983866589999999984988
Q gi|254780936|r 61 SPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ--SEGLEHLVIFSGDGCFTTLVAALQRKVKK 138 (182)
Q Consensus 61 ~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~--a~~~d~~iLvSGD~Df~pli~~lr~~Gk~ 138 (182)
.-.....+.++..|+.+...+. ...|.+....+++. ..++|-+||.+...+-.+.+..++..|..
T Consensus 78 ~ii~gi~~~a~~~Gy~l~i~~~-------------~~~~~e~~~~~ie~l~~~~vdGIIi~~~~~~~~~~~~~l~~~~iP 144 (219)
T 1jye_A 78 QIVAAILSRADQLGASVVVSMV-------------ERSGVEACKTAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVP 144 (219)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEC-------------CSSSHHHHHHHHHHHHTTTCSCEEEESCCCHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHCCCCEEEECC-------------CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 8877666667650770244123-------------432279999999999963777630136643025679998505896
Q ss_pred EEEEEE
Q ss_conf 999983
Q gi|254780936|r 139 VTIVST 144 (182)
Q Consensus 139 V~v~~~ 144 (182)
++++..
T Consensus 145 vV~iD~ 150 (219)
T 1jye_A 145 ALFLDV 150 (219)
T ss_dssp EEESSS
T ss_pred EEEEEC
T ss_conf 688514
No 82
>>3i0z_A Putative tagatose-6-phosphate ketose/aldose isomerase; NP_344614.1, structural genomics, joint center for structural genomics; HET: MSE; 1.70A {Streptococcus pneumoniae TIGR4} (A:55-173)
Probab=61.23 E-value=12 Score=17.88 Aligned_cols=49 Identities=16% Similarity=0.019 Sum_probs=33.9
Q ss_pred CCCCEEEEECCCH---HHHHHHHHHHH--CCCEEEEEEEECCCCCCCHHHHHHHCCCCEE
Q ss_conf 1158899983866---58999999998--4988999983157765470899985211151
Q gi|254780936|r 111 EGLEHLVIFSGDG---CFTTLVAALQR--KVKKVTIVSTVLSDPSMASDQLRRQADYFMD 165 (182)
Q Consensus 111 ~~~d~~iLvSGD~---Df~pli~~lr~--~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~ 165 (182)
..=|.+|++|.-+ +.+.+++.+|+ +|..|+.++-.. ...|.+.||..+.
T Consensus 54 ~~~dl~I~iS~sG~t~~~~~~~~~ak~~~~g~~vIaiT~~~------~s~l~~~ad~~l~ 107 (119)
T 3i0z_A 54 DVATVLVSFARSGNSPESLATVDLAKSLVDELYQVTITCAA------DGKLALQAHGDDR 107 (119)
T ss_dssp TSEEEEEEEESSSCCHHHHHHHHHHHHHCSSEEEEEEESCT------TSHHHHTSSSCTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEECCCCCC------CCHHHHHHCCCCC
T ss_conf 99859999847858789999999999857787640330588------9768776336765
No 83
>>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} (A:110-241)
Probab=61.07 E-value=12 Score=17.86 Aligned_cols=103 Identities=12% Similarity=-0.017 Sum_probs=66.4
Q ss_pred HHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH-
Q ss_conf 9999985179299999973068873146777579998897559569753458953788865435653299999999942-
Q gi|254780936|r 32 KLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS- 110 (182)
Q Consensus 32 ~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a- 110 (182)
.+.+.+.+.|.-..+ |.+..........+.+.|.+++...|..+.... ......+..-+.+++...
T Consensus 7 ~~~~~L~~~G~~~i~--~i~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 73 (132)
T 1dbq_A 7 MAGRYLIERGHREIG--VIPGPLERNTGAGRLAGFMKAMEEAMIKVPESW-----------IVQGDFEPESGYRAMQQIL 73 (132)
T ss_dssp HHHHHHHHTTCCSEE--EECCC------CHHHHHHHHHHHHTTCCCCGGG-----------BCCCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEE--EECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC-----------CCCCCCCHHHHHHHHHHHH
T ss_conf 999999865996699--963763124789999766789998089977200-----------2357677777899999998
Q ss_pred --CCCCEEEEECCCHHHHHHHHHHHHCCCEE----EEEEEECC
Q ss_conf --11588999838665899999999849889----99983157
Q gi|254780936|r 111 --EGLEHLVIFSGDGCFTTLVAALQRKVKKV----TIVSTVLS 147 (182)
Q Consensus 111 --~~~d~~iLvSGD~Df~pli~~lr~~Gk~V----~v~~~~~~ 147 (182)
..--++|++++|..-..++..+++.|.+| -|+++...
T Consensus 74 ~~~~~~~aii~~~~~~a~g~~~~l~~~g~~ip~di~i~~fd~~ 116 (132)
T 1dbq_A 74 SQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNV 116 (132)
T ss_dssp TSSSCCSEEEESCHHHHHHHHHHHHHTTCCTTTTCEEEEEECC
T ss_pred HCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCH
T ss_conf 4599984588557899999999999869999975699960682
No 84
>>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} (A:161-292)
Probab=61.07 E-value=12 Score=17.86 Aligned_cols=102 Identities=12% Similarity=-0.027 Sum_probs=67.3
Q ss_pred HHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--
Q ss_conf 999985179299999973068873146777579998897559569753458953788865435653299999999942--
Q gi|254780936|r 33 LLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS-- 110 (182)
Q Consensus 33 L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a-- 110 (182)
+.+.+.+.|.-.. .|.+..........+.+.|.+++...|..+.... ......+..-+.+++...
T Consensus 8 ~~~~L~~~G~~~i--~~i~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 74 (132)
T 1qpz_A 8 AGRYLIERGHREI--GVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESW-----------IVQGDFEPESGYRAMQQILS 74 (132)
T ss_dssp HHHHHHHHTCCCE--EEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGG-----------BCCCCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCEE--EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHE-----------EEECCCCHHHHHHHHHHHHH
T ss_conf 9999997599859--9982885553178999889999998599998221-----------89543426679999999981
Q ss_pred -CCCCEEEEECCCHHHHHHHHHHHHCCCEE----EEEEEECC
Q ss_conf -11588999838665899999999849889----99983157
Q gi|254780936|r 111 -EGLEHLVIFSGDGCFTTLVAALQRKVKKV----TIVSTVLS 147 (182)
Q Consensus 111 -~~~d~~iLvSGD~Df~pli~~lr~~Gk~V----~v~~~~~~ 147 (182)
..--++|++++|..-..++..+++.|.+| -|+++...
T Consensus 75 ~~~~~~aii~~~~~~a~g~~~~l~~~g~~ip~di~i~~fd~~ 116 (132)
T 1qpz_A 75 QPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNV 116 (132)
T ss_dssp SSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECC
T ss_pred CCCCCEEEEECCHHHHHHCCHHHHHCCCCCCCCEEEEEECCC
T ss_conf 799980899777099874022698739978987599987883
No 85
>>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken structural genomics/proteomics initiative, RSGI; 2.00A {Aeropyrum pernix} (A:1-120)
Probab=60.72 E-value=8.6 Score=18.72 Aligned_cols=41 Identities=15% Similarity=0.121 Sum_probs=32.9
Q ss_pred HHHHHHHHHCCCCEEEEECCCHH----HHHHHHHHHHCCCEEEEE
Q ss_conf 99999994211588999838665----899999999849889999
Q gi|254780936|r 102 LAVDAFEQSEGLEHLVIFSGDGC----FTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 102 laiD~~~~a~~~d~~iLvSGD~D----f~pli~~lr~~Gk~V~v~ 142 (182)
++-.+++.+..-++++|++||-= +..+++.+++.|..|.++
T Consensus 73 ~~~~~~~~~~~~~V~~l~~GDP~iy~~~~~l~~~~~~~g~~v~vi 117 (120)
T 1wde_A 73 RSREIVSRALDAVVAVVTAGDPXVATTHSSLAAEALEAGVAVRYI 117 (120)
T ss_dssp SHHHHTCCSSCCEEEEEESBCTTSSSSHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEC
T ss_conf 999999997379959996689864543999999998458967980
No 86
>>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi} (A:169-300)
Probab=60.70 E-value=12 Score=17.82 Aligned_cols=103 Identities=8% Similarity=-0.014 Sum_probs=61.0
Q ss_pred HHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH--H
Q ss_conf 99998517929999997306887314677757999889755956975345895378886543565329999999994--2
Q gi|254780936|r 33 LLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ--S 110 (182)
Q Consensus 33 L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~--a 110 (182)
+.+.+.+.|.=..++ .+...........+...|.++++..|..+..... .....+.....+++.. .
T Consensus 8 a~~~L~~~G~r~I~~-i~~~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 75 (132)
T 3kjx_A 8 XAQAILKAGYRRIGF-XGTKXPLDYRARKRFEGFTEVLGKNGVEIEDREF-----------YSGGSALAKGREXTQAXLE 75 (132)
T ss_dssp HHHHHHHHTCCSCCE-EESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEE-----------CSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC-----------CCCCCCCCCCCCHHHHHHC
T ss_conf 999999839986410-0666655621677888889899972986321100-----------0113221233110223202
Q ss_pred -CCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEEEECC
Q ss_conf -115889998386658999999998498----8999983157
Q gi|254780936|r 111 -EGLEHLVIFSGDGCFTTLVAALQRKVK----KVTIVSTVLS 147 (182)
Q Consensus 111 -~~~d~~iLvSGD~Df~pli~~lr~~Gk----~V~v~~~~~~ 147 (182)
..--++|+++.|.=-..+++.|+++|. .+-|+++...
T Consensus 76 ~~~~~~ai~~~~d~~a~~~l~~l~~~gi~vP~di~iigfd~~ 117 (132)
T 3kjx_A 76 RSPDLDFLYYSNDXIAAGGLLYLLEQGIDIPGQIGLAGFNNV 117 (132)
T ss_dssp HSTTCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECSBCC
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf 565412453267215678999999869987887599996882
No 87
>>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynthesis; HET: SAH; 2.40A {Bacillus megaterium} (A:1-130)
Probab=60.16 E-value=12 Score=17.76 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHH-CCCCEEEEECCCH----HHHHHHHHHHHCCCEEEEE
Q ss_conf 3299999999942-1158899983866----5899999999849889999
Q gi|254780936|r 98 MDVELAVDAFEQS-EGLEHLVIFSGDG----CFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 98 ~Dv~laiD~~~~a-~~~d~~iLvSGD~----Df~pli~~lr~~Gk~V~v~ 142 (182)
.-.+++-.+.+.+ ..-++++|+|||- -+..+++.+++.|..|.++
T Consensus 78 ~~~~~~~~i~~~~~~g~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~vi 127 (130)
T 1cbf_A 78 HLEEMVGTMLDRMREGKMVVRVHTGDPAMYGAIMEQMVLLKREGVDIEIV 127 (130)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEEESBCTTTTCCCHHHHHHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEC
T ss_conf 57888999999998098467635886422260677899997326644877
No 88
>>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} (A:1-144,A:256-288)
Probab=59.52 E-value=13 Score=17.69 Aligned_cols=56 Identities=16% Similarity=0.038 Sum_probs=39.9
Q ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCC
Q ss_conf 9999421158899983866589999999984988999983157765470899985211
Q gi|254780936|r 105 DAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADY 162 (182)
Q Consensus 105 D~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~ 162 (182)
|......++|.+++.|++..-.+.+..+-+.|+.|++-. .+......++|.+.|.+
T Consensus 81 ~~~~~~~~~DvVvi~tp~~~h~e~~~~al~~G~~Vi~Ek--p~~t~~e~~~l~e~a~k 136 (177)
T 3ijp_A 81 DPESAFSNTEGILDFSQPQASVLYANYAAQKSLIHIIGT--TGFSKTEEAQIADFAKY 136 (177)
T ss_dssp CHHHHTTSCSEEEECSCHHHHHHHHHHHHHHTCEEEECC--CCCCHHHHHHHHHHHTT
T ss_pred CHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEECC--CCCCHHHHHHHHHHHHC
T ss_conf 988933357627878887999999999998299578567--89988899999998633
No 89
>>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structural genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp} (A:109-244,A:291-303)
Probab=59.00 E-value=13 Score=17.64 Aligned_cols=89 Identities=10% Similarity=-0.074 Sum_probs=59.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--CCCC-EEEEECCCHH
Q ss_conf 973068873146777579998897559569753458953788865435653299999999942--1158-8999838665
Q gi|254780936|r 48 YYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS--EGLE-HLVIFSGDGC 124 (182)
Q Consensus 48 ~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a--~~~d-~~iLvSGD~D 124 (182)
.+...+........+...|.++++..|......... .....+..-+.+++... .+-+ .+|++++|+-
T Consensus 23 ~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~----------~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~~d~~ 92 (149)
T 3d02_A 23 VIYVGSLTVPQHNLWADLLVKYQKEHYPDXHEVTRR----------XPVAESVDDSRRTTLDLXKTYPDLKAVVSFGSNG 92 (149)
T ss_dssp EEECSCSSCHHHHHHHHHHHHHHHHHCTTEEESSSC----------BSCTTCHHHHHHHHHHHHHHCTTEEEEEESSTTH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEE----------ECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHH
T ss_conf 994288886689999999999997528865331156----------2378656999999999986199851899568589
Q ss_pred HHHHHHHHHHCCC--EEEEEEEEC
Q ss_conf 8999999998498--899998315
Q gi|254780936|r 125 FTTLVAALQRKVK--KVTIVSTVL 146 (182)
Q Consensus 125 f~pli~~lr~~Gk--~V~v~~~~~ 146 (182)
-.-+++.+++.|+ +|.++++..
T Consensus 93 a~gv~~al~~~g~~~~i~vvg~d~ 116 (149)
T 3d02_A 93 PIGAGRAVKEKRAKNKVAVYGXXI 116 (149)
T ss_dssp HHHHHHHHHHTTCTTTCEEEECCC
T ss_pred HHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 999999999769999838996088
No 90
>>1tlt_A Putative oxidoreductase (virulence factor MVIM homolog); structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} (A:1-126,A:262-319)
Probab=58.82 E-value=13 Score=17.62 Aligned_cols=37 Identities=11% Similarity=0.094 Sum_probs=31.9
Q ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 9994211588999838665899999999849889999
Q gi|254780936|r 106 AFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 106 ~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
.-++++++|.+++.|.+..-.+.+..+-+.|+.|.+=
T Consensus 59 ~~~L~~~~DaV~I~tp~~~H~e~a~~aL~~GkhVlvE 95 (184)
T 1tlt_A 59 LSSLAASCDAVFVHSSTASHFDVVSTLLNAGVHVCVD 95 (184)
T ss_dssp HHHHHTTCSEEEECSCTTHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC
T ss_conf 9998404431123432100012332233322233303
No 91
>>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} (A:213-330)
Probab=57.81 E-value=13 Score=17.67 Aligned_cols=48 Identities=13% Similarity=0.078 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHH-CCCCEEEEECCCHH----HHHHHHHHHHCCCEEEEE
Q ss_conf 5653299999999942-11588999838665----899999999849889999
Q gi|254780936|r 95 KSSMDVELAVDAFEQS-EGLEHLVIFSGDGC----FTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 95 kk~~Dv~laiD~~~~a-~~~d~~iLvSGD~D----f~pli~~lr~~Gk~V~v~ 142 (182)
.........-++.+.+ ..-++++|++||.- +..+++.++++|..|.++
T Consensus 63 ~~~~~~~~~~~~~~~~~~g~~v~~l~~GDP~~~~~~~~l~~~~~~~~~~v~vi 115 (118)
T 1pjq_A 63 HCVPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSVV 115 (118)
T ss_dssp CCCTTHHHHHHHHHHHHTTCEEEEEESBCTTTSSSHHHHHTTTTTTTCCEEEE
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEC
T ss_conf 53119999999999997598599976887321067999999850487379945
No 92
>>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides); 2.00A {Arthrobacter SP} (A:39-264)
Probab=57.78 E-value=13 Score=17.51 Aligned_cols=71 Identities=11% Similarity=0.026 Sum_probs=44.8
Q ss_pred HHCCCCEEEEECCCHH--HHHHHHHHHHCCCEEEEEEEECCCCCCCH--HHHHHHC---CCCEEHHHHHHHHCCCCCC
Q ss_conf 4211588999838665--89999999984988999983157765470--8999852---1115189978762258311
Q gi|254780936|r 109 QSEGLEHLVIFSGDGC--FTTLVAALQRKVKKVTIVSTVLSDPSMAS--DQLRRQA---DYFMDLAYLKNEIARDPDE 179 (182)
Q Consensus 109 ~a~~~d~~iLvSGD~D--f~pli~~lr~~Gk~V~v~~~~~~~~~~~S--~~L~~~a---d~fi~l~~l~~~i~r~~~~ 179 (182)
-...++++||+---+| ..-.+..+..+|.+|+++.-.-+...... ..|.... -..++.+++...+++.++.
T Consensus 122 r~~gi~~ivv~Gi~Td~CV~~Ta~~A~~~G~~V~v~~Da~~~~~~e~~~~al~~l~~~~~~v~~~~~~l~~l~~~~~~ 199 (226)
T 1nba_A 122 TSNRIDTLIVTGATAAGCVRHTVEDAIAKGFRPIIPRETIGDRVPGVVQWNLYDIDNKFGDVESTDSVVQYLDALPQF 199 (226)
T ss_dssp HHTTCCEEEEEEECTTTHHHHHHHHHHHHTCEEEEEGGGEECSSSSHHHHHHHHHHHHTCEEECHHHHHHHHHHSCCG
T ss_pred HHCCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCC
T ss_conf 866976389996365666999999999889989995503479999999999999996196992299999999847044
No 93
>>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} (A:1-122)
Probab=57.70 E-value=13 Score=17.50 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=30.5
Q ss_pred HHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 99421158899983866589999999984988999
Q gi|254780936|r 107 FEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTI 141 (182)
Q Consensus 107 ~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v 141 (182)
+-...++|.+++.|.+....+.+..+-+.|+.|.+
T Consensus 57 l~~~~~id~v~i~~~~~~~~~~~~~al~~g~~v~~ 91 (122)
T 2glx_A 57 LVGDPDVDAVYVSTTNELHREQTLAAIRAGKHVLC 91 (122)
T ss_dssp HHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHCCCCCHHHC
T ss_conf 95599988899954423320012111012210003
No 94
>>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE TAR; 2.10A {Bacillus halodurans} (A:1-125,A:270-293)
Probab=57.61 E-value=13 Score=17.49 Aligned_cols=28 Identities=7% Similarity=0.171 Sum_probs=14.3
Q ss_pred HHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCC
Q ss_conf 9999984988999983157765470899985211
Q gi|254780936|r 129 VAALQRKVKKVTIVSTVLSDPSMASDQLRRQADY 162 (182)
Q Consensus 129 i~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~ 162 (182)
-++++...+...|++ +..+..|++.|..
T Consensus 88 ~e~l~~l~~~~~V~~------G~i~~~l~~~~~~ 115 (149)
T 3d4o_A 88 EEXIEKTPNHCVVYS------GISNTYLNQCXKK 115 (149)
T ss_dssp HHHHHTSCTTCEEEE------SSCCHHHHHHHHH
T ss_pred HHHHHHCCCCCEEEE------CCCHHHHHHHHHH
T ss_conf 989841747878995------4776888999986
No 95
>>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} (A:1-109,A:256-284)
Probab=57.19 E-value=14 Score=17.44 Aligned_cols=69 Identities=22% Similarity=0.159 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH--HCCCCEEEEECCCHH-HHHHHHHHHHCCC
Q ss_conf 7757999889755956975345895378886543565329999999994--211588999838665-8999999998498
Q gi|254780936|r 61 SPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ--SEGLEHLVIFSGDGC-FTTLVAALQRKVK 137 (182)
Q Consensus 61 ~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~--a~~~d~~iLvSGD~D-f~pli~~lr~~Gk 137 (182)
.-.....+++.+.|+.++.... -|..-....++. ..++|-+|+.+.|.+ ..+.++.+++.|.
T Consensus 19 ~i~~gi~~~a~~~g~~vi~~~~---------------~~~~~~~~~i~~li~~~vDGIIi~~~~~~~~~~~i~~l~~~gI 83 (138)
T 8abp_A 19 TEWKFADKAGKDLGFEVIKIAV---------------PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDM 83 (138)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEC---------------CSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCEEEEECC---------------CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCC
T ss_conf 9999999999972999999859---------------9999999999999975999899805323455899999997399
Q ss_pred EEEEEEE
Q ss_conf 8999983
Q gi|254780936|r 138 KVTIVST 144 (182)
Q Consensus 138 ~V~v~~~ 144 (182)
.|+.+..
T Consensus 84 PvV~id~ 90 (138)
T 8abp_A 84 KVIAVDD 90 (138)
T ss_dssp EEEEESS
T ss_pred CEEEEEC
T ss_conf 8899954
No 96
>>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} (A:)
Probab=57.12 E-value=11 Score=18.14 Aligned_cols=47 Identities=11% Similarity=0.094 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHH----HCCCCEEEEECCCH--------------HHHHHHHHHHHCCCEEEEEEE
Q ss_conf 329999999994----21158899983866--------------589999999984988999983
Q gi|254780936|r 98 MDVELAVDAFEQ----SEGLEHLVIFSGDG--------------CFTTLVAALQRKVKKVTIVST 144 (182)
Q Consensus 98 ~Dv~laiD~~~~----a~~~d~~iLvSGD~--------------Df~pli~~lr~~Gk~V~v~~~ 144 (182)
.++.+++..... ....++-|++.||| ++...++.+++.|.++.++..
T Consensus 16 ~~~~~al~~a~~~~~~g~~~~V~i~f~~~gV~~~~~~~~~~~~~~l~~~~~~l~~~gv~i~vC~~ 80 (117)
T 1jx7_A 16 ESLFNSLRLAIALREQESNLDLRLFLXSDAVTAGLRGQKPGEGYNIQQXLEILTAQNVPVKLCKT 80 (117)
T ss_dssp SHHHHHHHHHHHHHHHCTTCEEEEEECGGGGGGGBSCCCCSSSCCHHHHHHHHHHTTCCEEEEHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEHH
T ss_conf 88999999999999637897189999734477630567875321699999999987998998699
No 97
>>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; HET: MSE; 2.88A {Vibrio parahaemolyticus} (A:103-223)
Probab=55.71 E-value=14 Score=17.29 Aligned_cols=100 Identities=10% Similarity=0.055 Sum_probs=62.1
Q ss_pred HHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH---H
Q ss_conf 9999851792999999730688731467775799988975595697534589537888654356532999999999---4
Q gi|254780936|r 33 LLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFE---Q 109 (182)
Q Consensus 33 L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~---~ 109 (182)
+.+.+.+.+.-.. .|.+.+.+......+...|.+++...|........ .....+..-..+.+. .
T Consensus 9 a~~~L~~~G~~~i--~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 75 (121)
T 3d8u_A 9 CTRHLIEQGFKNV--GFIGARGNHSTLQRQLHGWQSAXIENYLTPDHFLT-----------THEAPSSQLGAEGLAKLLL 75 (121)
T ss_dssp HHHHHHTTTCCCE--EEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEE-----------CSSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCEE--EECCCCCCCCHHHHCCHHHHHHHHHCCCCCCCHHC-----------CCCCCCHHHHHHHHHHHHH
T ss_conf 9998875146236--41135765301221000135555422776640001-----------2357522268899998765
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHCCCE----EEEEEEE
Q ss_conf 21158899983866589999999984988----9999831
Q gi|254780936|r 110 SEGLEHLVIFSGDGCFTTLVAALQRKVKK----VTIVSTV 145 (182)
Q Consensus 110 a~~~d~~iLvSGD~Df~pli~~lr~~Gk~----V~v~~~~ 145 (182)
....-++|++++|.--..++..+++.|.+ |-|+++.
T Consensus 76 ~~~~~~ai~~~~d~~a~~~l~~l~~~g~~vP~di~iig~d 115 (121)
T 3d8u_A 76 RDSSLNALVCSHEEIAIGALFECHRRVLKVPTDIAIICLE 115 (121)
T ss_dssp TCTTCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEESS
T ss_pred HCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCEEEEECC
T ss_conf 2378607875027777666665542133223321013216
No 98
>>2fn9_A Ribose ABC transporter, periplasmic ribose- binding protein; RBP, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima MSB8} PDB: 2fn8_A* (A:107-246)
Probab=55.61 E-value=15 Score=17.28 Aligned_cols=92 Identities=9% Similarity=-0.053 Sum_probs=59.6
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH---CCCCEEEEEC
Q ss_conf 9999973068873146777579998897559569753458953788865435653299999999942---1158899983
Q gi|254780936|r 44 IRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS---EGLEHLVIFS 120 (182)
Q Consensus 44 ~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a---~~~d~~iLvS 120 (182)
.+...+.+.+........+...|.++++..|........ ..+.+..-+..++... ..--.+|+++
T Consensus 25 ~~~i~~i~g~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 92 (140)
T 2fn9_A 25 EIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVAQQ------------SAEFDRDTAYKVTEQILQAHPEIKAIWCG 92 (140)
T ss_dssp CEEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEEEEEEE------------ECTTCHHHHHHHHHHHHHHCTTCCEEEES
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE------------ECCCCHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 551465138877505789998999998651455622688------------33300278999999998513222236765
Q ss_pred CCHHHHHHHHHHHHCCC-EEEEEEEECC
Q ss_conf 86658999999998498-8999983157
Q gi|254780936|r 121 GDGCFTTLVAALQRKVK-KVTIVSTVLS 147 (182)
Q Consensus 121 GD~Df~pli~~lr~~Gk-~V~v~~~~~~ 147 (182)
+|.-..-+++.|+++|. .+.|+++...
T Consensus 93 nd~~a~g~~~al~~~g~~di~vig~d~~ 120 (140)
T 2fn9_A 93 NDAMALGAMKACEAAGRTDIYIFGFDGA 120 (140)
T ss_dssp SHHHHHHHHHHHHHTTCTTCEEECCBCC
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 7610033899999737467531368798
No 99
>>3g1w_A Sugar ABC transporter; sugar-binding protein, target 11229F, transport protein, structural genomics, PSI-2; 2.02A {Bacillus halodurans c-125} (A:109-242)
Probab=55.48 E-value=15 Score=17.27 Aligned_cols=101 Identities=8% Similarity=-0.119 Sum_probs=57.7
Q ss_pred HHHHHHHC--CEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH-
Q ss_conf 99998517--929999997306887314677757999889755956975345895378886543565329999999994-
Q gi|254780936|r 33 LLKAFRSR--AIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ- 109 (182)
Q Consensus 33 L~~~l~~~--~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~- 109 (182)
+.+++.+. +.-..+. ..+.. ......+...|.+.+...|..+....... ...+..-+..++..
T Consensus 8 ~~~~l~~~~~g~~~i~~-i~~~~--~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 73 (134)
T 3g1w_A 8 AAYKXAELLDGEGEVAV-ITLPN--QLNHQERTTGFKETLEAEFPAIEVIAVED-----------GRGDSLHSRRVAHQL 73 (134)
T ss_dssp HHHHHHHHTTTCEEEEE-EECTT--CHHHHHHHHHHHHHHHHHCTTEEEEEEEE-----------CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCEEE-EECCC--CCHHHHHHHHHHHHHHHHCCCCCEEEEEC-----------CCCCHHHHHHHHHHH
T ss_conf 99999997145761999-93124--31289999999999987577663145751-----------665358899999987
Q ss_pred -HCCCC-EEEEECCCHHHHHHHHHHHHCCC--EEEEEEEECC
Q ss_conf -21158-89998386658999999998498--8999983157
Q gi|254780936|r 110 -SEGLE-HLVIFSGDGCFTTLVAALQRKVK--KVTIVSTVLS 147 (182)
Q Consensus 110 -a~~~d-~~iLvSGD~Df~pli~~lr~~Gk--~V~v~~~~~~ 147 (182)
..+-+ .+|++++|..-.-+++.+++.|+ +|.++++...
T Consensus 74 l~~~~~~~ai~~~~~~~a~g~~~al~~~g~~~di~i~g~d~~ 115 (134)
T 3g1w_A 74 LEDYPNLAGIFATEANGGVGVGDAVRLESRAGEIQIISFDTD 115 (134)
T ss_dssp HHHCTTEEEEEESSHHHHHHHHHHHHHTTCTTTSEEEEESCC
T ss_pred HCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 403899888997774899999999997699998399997896
No 100
>>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} (A:157-289)
Probab=55.38 E-value=15 Score=17.26 Aligned_cols=79 Identities=9% Similarity=-0.082 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--CC-CCEEEEECCCHHHHHHHHHH
Q ss_conf 3146777579998897559569753458953788865435653299999999942--11-58899983866589999999
Q gi|254780936|r 56 PEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS--EG-LEHLVIFSGDGCFTTLVAAL 132 (182)
Q Consensus 56 ~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a--~~-~d~~iLvSGD~Df~pli~~l 132 (182)
......+.+.|.++++..|....... .-.+.|..-+...+... .+ --++|++++|.-...+++.+
T Consensus 30 ~~~~~~R~~Gf~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al 97 (133)
T 1jx6_A 30 GYISDVRGDTFIHQVNRDNNFELQSA------------YYTKATKQSGYDAAKASLAKHPDVDFIYACSTDVALGAVDAL 97 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHCCEEEEE------------ECCCSSHHHHHHHHHHHHHHCCCCSEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCEE------------EECCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHH
T ss_conf 85699999999999986327885159------------837999999999999975425666235743759999999999
Q ss_pred HHCCCE-EEEEEEEC
Q ss_conf 984988-99998315
Q gi|254780936|r 133 QRKVKK-VTIVSTVL 146 (182)
Q Consensus 133 r~~Gk~-V~v~~~~~ 146 (182)
++.|.. |.++++..
T Consensus 98 ~~~g~~~i~ivg~D~ 112 (133)
T 1jx6_A 98 AELGREDIMINGWGG 112 (133)
T ss_dssp HHHTCTTSEEBCSBC
T ss_pred HHHCCCCCEEECCCC
T ss_conf 874898828981689
No 101
>>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} (A:)
Probab=55.08 E-value=15 Score=17.23 Aligned_cols=52 Identities=10% Similarity=-0.031 Sum_probs=40.0
Q ss_pred HHCCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 421158899983866---5899999999849889999831577654708999852111518
Q gi|254780936|r 109 QSEGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 109 ~a~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
....=|.+|++|.-| +.+.+++.+|++|.+|+.++-.. ...|.+.||..+.+
T Consensus 107 ~~~~~dlvI~~S~sG~t~~~~~~~~~ak~~g~~vI~IT~~~------~s~l~~~ad~~i~~ 161 (188)
T 1tk9_A 107 LGNEKDVLIGISTSGKSPNVLEALKKAKELNXLCLGLSGKG------GGXXNKLCDHNLVV 161 (188)
T ss_dssp HCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGG------GTTHHHHCSEEEEE
T ss_pred HCCCCCEEEEEECCCCCCCHHHHHHHHHHEEEEEEEECCCC------CHHHHHHCCEEEEE
T ss_conf 37999989998189888315765677774241489983788------52679859999997
No 102
>>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, thermus themophilus; HET: NAD; 2.16A {Thermus thermophilus HB8} (A:78-188)
Probab=55.06 E-value=14 Score=17.47 Aligned_cols=38 Identities=8% Similarity=-0.118 Sum_probs=32.2
Q ss_pred HHHHH-HCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 99994-211588999838665899999999849889999
Q gi|254780936|r 105 DAFEQ-SEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 105 D~~~~-a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
+.-++ ...+|.+++.|+.....+++..+-+.|++|.+.
T Consensus 55 ~~~~~~~~~~D~v~i~~p~~~~~~~~~~~l~~g~~vi~~ 93 (111)
T 2dt5_A 55 LLPQRVPGRIEIALLTVPREAAQKAADLLVAAGIKGILN 93 (111)
T ss_dssp GHHHHSTTTCCEEEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 899999827709998189899999999999849929966
No 103
>>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium LT2} (A:1-127,A:265-275)
Probab=54.94 E-value=15 Score=17.21 Aligned_cols=72 Identities=18% Similarity=0.234 Sum_probs=44.4
Q ss_pred HHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 57999889755956975345895378886543565329999999994211588999838665899999999849889999
Q gi|254780936|r 63 LHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 63 ~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
.......|...|+++..-........ .+... .........++|.+|.+.|||=+..++..+...+..|.++
T Consensus 23 ~~~i~~~L~~~g~~~~~~~~~~~~~~------~~~~~---~~~~~~~~~~~d~vv~~GGDGTil~a~~~l~~~~ipi~~I 93 (138)
T 2an1_A 23 HEMLYRWLCDQGYEVIVEQQIAHELQ------LKNVP---TGTLAEIGQQADLAVVVGGDGNMLGAARTLARYDINVIGI 93 (138)
T ss_dssp HHHHHHHHHHTTCEEEEEHHHHHHTT------CSSCC---EECHHHHHHHCSEEEECSCHHHHHHHHHHHTTSSCEEEEB
T ss_pred HHHHHHHHHHCCCEEEEEHHHHHHCC------CCCCC---CCCHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEE
T ss_conf 99999999978699998078987639------98888---4665572547768999778835988867642557459970
Q ss_pred E
Q ss_conf 8
Q gi|254780936|r 143 S 143 (182)
Q Consensus 143 ~ 143 (182)
-
T Consensus 94 p 94 (138)
T 2an1_A 94 N 94 (138)
T ss_dssp C
T ss_pred C
T ss_conf 1
No 104
>>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans} (A:110-229)
Probab=54.93 E-value=15 Score=17.21 Aligned_cols=75 Identities=15% Similarity=0.106 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH-CCCCEEEEECCCHHHHHHHHHHHHCCCE
Q ss_conf 777579998897559569753458953788865435653299999999942-1158899983866589999999984988
Q gi|254780936|r 60 FSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS-EGLEHLVIFSGDGCFTTLVAALQRKVKK 138 (182)
Q Consensus 60 ~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a-~~~d~~iLvSGD~Df~pli~~lr~~Gk~ 138 (182)
..+.+.|.+.++..|........ .....+..-+.++++.. .+-=.+|+.++|.=-..+++.+++.|++
T Consensus 29 ~~R~~Gf~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~d~I~~~nD~~A~g~~~a~~~~g~~ 97 (120)
T 2hqb_A 29 QPEVEGFVDGAKYXNESEAFVRY-----------VGEWTDADKALELFQELQKEQVDVFYPAGDGYHVPVVEAIKDQGDF 97 (120)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEE-----------CSSSSCHHHHHHHHHHHHTTTCCEEECCCTTTHHHHHHHHHHHTCE
T ss_pred CHHHHHHHHHHHHHCCCEEEEEE-----------CCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCE
T ss_conf 28888999998741454169997-----------4882220479999999985055467750588555899999975974
Q ss_pred EEEEEEE
Q ss_conf 9999831
Q gi|254780936|r 139 VTIVSTV 145 (182)
Q Consensus 139 V~v~~~~ 145 (182)
|+.+...
T Consensus 98 ViG~d~~ 104 (120)
T 2hqb_A 98 AIGYVGD 104 (120)
T ss_dssp EEEEESC
T ss_pred EEECCCC
T ss_conf 5300366
No 105
>>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.99A {Actinobacillus succinogenes 130Z} (A:108-238)
Probab=54.72 E-value=15 Score=17.19 Aligned_cols=101 Identities=10% Similarity=-0.044 Sum_probs=64.8
Q ss_pred HHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--
Q ss_conf 999985179299999973068873146777579998897559569753458953788865435653299999999942--
Q gi|254780936|r 33 LLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS-- 110 (182)
Q Consensus 33 L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a-- 110 (182)
+.+.+.+.|. +...|.+.+.+......+...|.+++...|..+..-. ...+.+..-...++...
T Consensus 8 a~~~L~~~G~--r~I~~i~~~~~~~~~~~r~~gf~~a~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 73 (131)
T 3c3k_A 8 VVDQLVKSGK--KRIALINHDLAYQYAQHRESGYLNRLKFHGLDYSRIS------------YAENLDYMAGKLATFSLLK 73 (131)
T ss_dssp HHHHHHHTTC--CCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCCEEE------------ECSSSSHHHHHHHHHHHHS
T ss_pred CCHHHHCCCC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC------------CCCCHHHHHHHHCCCCCCC
T ss_conf 2022211576--5534444555520444434667678998098632222------------2331145655411222212
Q ss_pred -CCCCEEEEECCCHHHHHHHHHHHHCCCE----EEEEEEECC
Q ss_conf -1158899983866589999999984988----999983157
Q gi|254780936|r 111 -EGLEHLVIFSGDGCFTTLVAALQRKVKK----VTIVSTVLS 147 (182)
Q Consensus 111 -~~~d~~iLvSGD~Df~pli~~lr~~Gk~----V~v~~~~~~ 147 (182)
..--++|+++.|..-..++..+++.|.+ +.|+++...
T Consensus 74 ~~~~~~ai~~~~d~~a~~~~~~~~~~g~~iP~di~i~gfdd~ 115 (131)
T 3c3k_A 74 SAVKPDAIFAISDVLAAGAIQALTESGLSIPQDVAVVGFDGV 115 (131)
T ss_dssp SSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECSBCC
T ss_pred CCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCH
T ss_conf 244785310000488999999997503467833675225876
No 106
>>2rjo_A Twin-arginine translocation pathway signal protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: GAL; 2.05A {Burkholderia phytofirmans psjn} (A:118-252)
Probab=54.30 E-value=15 Score=17.15 Aligned_cols=104 Identities=6% Similarity=-0.208 Sum_probs=62.0
Q ss_pred HHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH---H
Q ss_conf 9999851792999999730688731467775799988975595697534589537888654356532999999999---4
Q gi|254780936|r 33 LLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFE---Q 109 (182)
Q Consensus 33 L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~---~ 109 (182)
+.+.+.+...-.+...+............+...|.+.|+..|......... ....+-.-....+. .
T Consensus 8 a~~~l~~~~~g~~~i~~i~g~~~~~~~~~R~~Gf~~~l~e~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~ 76 (135)
T 2rjo_A 8 TATQLFKSXGGKGGVVALGGIFSNVPAIERKAGLDAALKKFPGIQLLDFQV-----------ADWNSQKAFPIXQAWXTR 76 (135)
T ss_dssp HHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHHTCTTEEEEEEEE-----------CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHC-----------CCCCHHHHHHHHHHHHHH
T ss_conf 999988745664046413678652167888889999998740145311001-----------542348999999999864
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEEEECC
Q ss_conf 2115889998386658999999998498--8999983157
Q gi|254780936|r 110 SEGLEHLVIFSGDGCFTTLVAALQRKVK--KVTIVSTVLS 147 (182)
Q Consensus 110 a~~~d~~iLvSGD~Df~pli~~lr~~Gk--~V~v~~~~~~ 147 (182)
...-=..|+.++|.--.-+++.+++.|. .|.|+++...
T Consensus 77 ~~~~~~~i~~~~d~~a~g~~~al~~~gi~~~i~vvg~d~~ 116 (135)
T 2rjo_A 77 FNSKIKGVWAANDDXALGAIEALRAEGLAGQIPVTGXDGT 116 (135)
T ss_dssp HGGGEEEEEESSHHHHHHHHHHHHHTTCBTTBCEECSBCC
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCEEECCCC
T ss_conf 6776768997786899999999997699867437846798
No 107
>>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} (A:160-293)
Probab=54.27 E-value=15 Score=17.15 Aligned_cols=104 Identities=10% Similarity=0.110 Sum_probs=66.1
Q ss_pred HHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH--
Q ss_conf 999998517929999997306887314677757999889755956975345895378886543565329999999994--
Q gi|254780936|r 32 KLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ-- 109 (182)
Q Consensus 32 ~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~-- 109 (182)
.+.+.+.+.|.=..+++ .+..........+.+.|.++++..|..+...... ....+..-..+++..
T Consensus 8 ~a~~~L~~~G~r~i~~i-~~~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 75 (134)
T 2hsg_A 8 DAVQSLIDSGHKNIAFV-SGTLEEPINHAKKVKGYKRALTESGLPVRDSYIV-----------EGDYTYDSGIEAVEKLL 75 (134)
T ss_dssp HHHHHHHTTTCSCEEEE-ESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEE-----------ECCSSHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCEEEEE-ECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEE-----------ECCCCHHHHHHHHHHHH
T ss_conf 98643213687147999-5364333310268899999999859998832588-----------46887788999999998
Q ss_pred -HCCCCEEEEECCCHHHHHHHHHHHHCCCE----EEEEEEECC
Q ss_conf -21158899983866589999999984988----999983157
Q gi|254780936|r 110 -SEGLEHLVIFSGDGCFTTLVAALQRKVKK----VTIVSTVLS 147 (182)
Q Consensus 110 -a~~~d~~iLvSGD~Df~pli~~lr~~Gk~----V~v~~~~~~ 147 (182)
...--+++++++|.-...++..+++.|.+ +-|+++...
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~iP~di~vigfd~~ 118 (134)
T 2hsg_A 76 EEDEKPTAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNT 118 (134)
T ss_dssp HSSSCCSEEEESSHHHHHHHHHHHHHTTCCHHHHCEEEEESCC
T ss_pred HCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf 3499985774178588873238999729988898499997882
No 108
>>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} (A:164-296)
Probab=53.70 E-value=16 Score=17.09 Aligned_cols=103 Identities=13% Similarity=0.062 Sum_probs=65.6
Q ss_pred HHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH-
Q ss_conf 9999985179299999973068873146777579998897559569753458953788865435653299999999942-
Q gi|254780936|r 32 KLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS- 110 (182)
Q Consensus 32 ~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a- 110 (182)
.+.+.+.+.+.=.. .|.+.+........+.+.|.+++...|..+..... .....+..-..+++...
T Consensus 8 ~a~~~l~~~G~~~i--~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 74 (133)
T 3dbi_A 8 NAVAELINAGHQEI--AFLTGSXDSPTSIERLAGYKDALAQHGIALNEKLI-----------ANGKWTPASGAEGVEXLL 74 (133)
T ss_dssp HHHHHHHHTTCCSE--EEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGE-----------ECCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEE--EEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEE-----------EECCCCHHHHHHHHHHHH
T ss_conf 99999998499859--99978999866999999999999983999883147-----------615764677999999998
Q ss_pred --CCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEEEECC
Q ss_conf --115889998386658999999998498----8999983157
Q gi|254780936|r 111 --EGLEHLVIFSGDGCFTTLVAALQRKVK----KVTIVSTVLS 147 (182)
Q Consensus 111 --~~~d~~iLvSGD~Df~pli~~lr~~Gk----~V~v~~~~~~ 147 (182)
..--++|+++.|.=-.-++..+++.|. .+.|+++...
T Consensus 75 ~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vP~di~i~~~d~~ 117 (133)
T 3dbi_A 75 ERGAKFSALVASNDDXAIGAXKALHERGVAVPEQVSVIGFDDI 117 (133)
T ss_dssp HTTCCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEESCC
T ss_pred HCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCH
T ss_conf 3488864999678999999999999759998998699998981
No 109
>>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics, protein structure initiative; 1.84A {Clostridium acetobutylicum atcc 824} (A:111-244)
Probab=53.66 E-value=16 Score=17.09 Aligned_cols=100 Identities=11% Similarity=0.087 Sum_probs=65.3
Q ss_pred HHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--
Q ss_conf 999985179299999973068873146777579998897559569753458953788865435653299999999942--
Q gi|254780936|r 33 LLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS-- 110 (182)
Q Consensus 33 L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a-- 110 (182)
+.+.+.+.|.=.. .|.+.+........+.+.|.+++...|..+...... ....+..-........
T Consensus 8 a~~~L~~~G~r~i--~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 74 (134)
T 3g85_A 8 ASLLFAKKRYKSA--AAILTESLNDAXDNRNKGFIETCHKNGIKISENHII-----------AAENSIHGGVDAAKKLXK 74 (134)
T ss_dssp HHHHHHHTTCCBC--EEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEE-----------ECCSSHHHHHHHHHHHTT
T ss_pred HHHHHHCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEE-----------CCCCCCHHHHHHHHHHHH
T ss_conf 6543310222222--223566442177777765410111012234422001-----------024220156778887765
Q ss_pred -CCCCEEEEECCCHHHHHHHHHHHHCCCE----EEEEEEE
Q ss_conf -1158899983866589999999984988----9999831
Q gi|254780936|r 111 -EGLEHLVIFSGDGCFTTLVAALQRKVKK----VTIVSTV 145 (182)
Q Consensus 111 -~~~d~~iLvSGD~Df~pli~~lr~~Gk~----V~v~~~~ 145 (182)
..--++|+++.|.--..++..|+++|.+ +-|+++.
T Consensus 75 ~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vP~di~ii~f~ 114 (134)
T 3g85_A 75 LKNTPKALFCNSDSIALGVISVLNKRQISIPDDIEIVAIG 114 (134)
T ss_dssp SSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 0465422442022233015677640113588446676326
No 110
>>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} (A:114-248)
Probab=53.61 E-value=16 Score=17.08 Aligned_cols=84 Identities=13% Similarity=-0.030 Sum_probs=54.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH---HHCCCCEEEEECCCHHHHHH
Q ss_conf 688731467775799988975595697534589537888654356532999999999---42115889998386658999
Q gi|254780936|r 52 VVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFE---QSEGLEHLVIFSGDGCFTTL 128 (182)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~---~a~~~d~~iLvSGD~Df~pl 128 (182)
..........+...|.++++..+......... .+.+..-...++. ....--.+|++++|.--..+
T Consensus 28 ~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~a~g~ 95 (135)
T 1gud_A 28 GKAGNASGEARRNGATEAFKKASQIKLVASQP------------ADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGV 95 (135)
T ss_dssp CSTTCHHHHHHHHHHHHHHHTCTTEEEEEEEE------------CTTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHH
T ss_pred CCCCHHHHHHHHHCCHHHHHCCCCCCEEEEEC------------CCHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHH
T ss_conf 87401788887501034553057764035641------------530158999999987652257412322676999999
Q ss_pred HHHHHHCCC--EEEEEEEECC
Q ss_conf 999998498--8999983157
Q gi|254780936|r 129 VAALQRKVK--KVTIVSTVLS 147 (182)
Q Consensus 129 i~~lr~~Gk--~V~v~~~~~~ 147 (182)
++.+++.|+ .+.|+++...
T Consensus 96 ~~al~~~g~p~~i~v~g~d~~ 116 (135)
T 1gud_A 96 AQAVANAGKTGKVLVVGTDGI 116 (135)
T ss_dssp HHHHHHTTCTTTSEEEEESCC
T ss_pred HHHHHHCCCCCCEEEEEECCC
T ss_conf 999997799988389973797
No 111
>>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: NAD; 1.90A {Thermotoga maritima} (A:1-120,A:228-253)
Probab=53.50 E-value=11 Score=18.15 Aligned_cols=49 Identities=6% Similarity=0.084 Sum_probs=34.7
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCC---CHHHHHHHCC
Q ss_conf 211588999838665899999999849889999831577654---7089998521
Q gi|254780936|r 110 SEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSM---ASDQLRRQAD 161 (182)
Q Consensus 110 a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~~~~---~S~~L~~~ad 161 (182)
..++|.++++|......+.+..+-+.|+.|.+-. +..-. ..++|.++|.
T Consensus 58 ~~~iD~Vii~t~~~~h~~~~~~al~~Gk~Vl~EK---P~a~~~~e~~~~L~~~a~ 109 (146)
T 1j5p_A 58 PSDVSTVVECASPEAVKEYSLQILKNPVNYIIIS---TSAFADEVFRERFFSELK 109 (146)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHTTSSSEEEECC---GGGGGSHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEE---CCCCCCCHHHHHHHHHHH
T ss_conf 6799899985884899999999997599799970---530357218999999999
No 112
>>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} (A:1-127)
Probab=53.13 E-value=16 Score=17.03 Aligned_cols=38 Identities=21% Similarity=0.172 Sum_probs=32.1
Q ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 99994211588999838665899999999849889999
Q gi|254780936|r 105 DAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 105 D~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
+.+...+.+|.+++.|.+....+.+..+-+.||.|.+-
T Consensus 60 ~~~l~~~~vd~V~i~t~~~~h~~~~~~~~~~gk~v~~E 97 (127)
T 3e82_A 60 EAAVQHPDVDLVVIASPNATHAPLARLALNAGKHVVVD 97 (127)
T ss_dssp HHHHTCTTCSEEEECSCGGGHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCCCCEEEEECCHHHHCCCCCCCCCCCCHHHCC
T ss_conf 99955999988999331332001221123333000014
No 113
>>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus} (A:125-258,A:355-392)
Probab=52.28 E-value=16 Score=16.95 Aligned_cols=100 Identities=14% Similarity=0.043 Sum_probs=61.5
Q ss_pred HHHHHHHHHCCE-EEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 999999851792-9999997306887314677757999889755956975345895378886543565329999999994
Q gi|254780936|r 31 RKLLKAFRSRAI-VIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ 109 (182)
Q Consensus 31 ~~L~~~l~~~~~-l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~ 109 (182)
..+.+++.+... -..+..|. +..........|.+.+++.|.++...... ..+..|..-. +...
T Consensus 7 ~ala~~i~~~~g~k~Vaii~~----d~~~G~~~~~~f~~~l~~~G~evv~~~~~----------~~~~~d~s~~--i~~i 70 (172)
T 3lkb_A 7 VALLEYIAREKKGAKVALVVH----PSPFGRAPVEDARKAARELGLQIVDVQEV----------GSGNLDNTAL--LKRF 70 (172)
T ss_dssp HHHHHHHHHHCTTCEEEEEEC----SSHHHHTTHHHHHHHHHHHTCEEEEEEEC----------CTTCCCCHHH--HHHH
T ss_pred HHHHHHHHHHCCCCEEEEEEC----CCCCHHHHHHHHHHHHHHCCCEEEEEEEC----------CCCCCHHHHH--HHHH
T ss_conf 889999987628977999933----56303899999999998749879999814----------8997235578--8876
Q ss_pred H-CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf 2-115889998386658999999998498899998315
Q gi|254780936|r 110 S-EGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVL 146 (182)
Q Consensus 110 a-~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~ 146 (182)
. .+.|.+++.+...|.+.+++.+++.|.+..+++...
T Consensus 71 k~a~pdvVv~~~~~~~~~~ilk~a~~~G~~~~~i~~~~ 108 (172)
T 3lkb_A 71 EQAGVEYVVHQNVAGPVANILKDAKRLGLKMRHLGAHY 108 (172)
T ss_dssp HHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEEECGG
T ss_pred HCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 53699899993662679999999998399964999556
No 114
>>3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf} (A:156-285)
Probab=51.96 E-value=17 Score=16.92 Aligned_cols=103 Identities=9% Similarity=-0.112 Sum_probs=60.5
Q ss_pred HHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 99999851792999999730688731467775799988975595697534589537888654356532999999999421
Q gi|254780936|r 32 KLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSE 111 (182)
Q Consensus 32 ~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~ 111 (182)
.+.+.+.+.+.-.. .|.+.+........+...|.++++..|..+........... ...+.+. .+....
T Consensus 7 ~a~~~L~~~G~r~I--~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~------~~l~~~ 74 (130)
T 3ctp_A 7 MAFDHLYEKGCRKI--LHIKGPEVFEATELRYKGFLDGARAKDLEIDFIEFQHDFQV----KMLEEDI------NSMKDI 74 (130)
T ss_dssp HHHHHHHHTTCCSE--EEEECCTTCHHHHHHHHHHHHHHHHTTCCCEEEECSSSCCG----GGGGCCC------TTGGGG
T ss_pred HHHHHHHHCCCCEE--EEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH----HHHHHHH------HHHHHC
T ss_conf 99999998699669--99646345416888887620136651356222321002457----7899999------998505
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCE----EEEEEEEC
Q ss_conf 158899983866589999999984988----99998315
Q gi|254780936|r 112 GLEHLVIFSGDGCFTTLVAALQRKVKK----VTIVSTVL 146 (182)
Q Consensus 112 ~~d~~iLvSGD~Df~pli~~lr~~Gk~----V~v~~~~~ 146 (182)
.--++|+++.|.--..++..+++.|.+ +.|+++..
T Consensus 75 ~~~~ai~~~~d~~A~~~~~~l~~~g~~ip~di~iigfd~ 113 (130)
T 3ctp_A 75 VNYDGIFVFNDIAAATVMRALKKRGVSIPQEVQIIGFDN 113 (130)
T ss_dssp GGSSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECSBC
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHCCCCCCCCEEECCCCC
T ss_conf 599845524658789999999984999884333212487
No 115
>>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus HB8} (A:1-120)
Probab=51.46 E-value=17 Score=16.87 Aligned_cols=47 Identities=19% Similarity=0.035 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHH-CCCCEEEEECCCHH----HHHHHHHHHHCCCEEEEE
Q ss_conf 653299999999942-11588999838665----899999999849889999
Q gi|254780936|r 96 SSMDVELAVDAFEQS-EGLEHLVIFSGDGC----FTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 96 k~~Dv~laiD~~~~a-~~~d~~iLvSGD~D----f~pli~~lr~~Gk~V~v~ 142 (182)
.....++.-++++.+ ..-++++++|||-= +..+++.+++.|.+|+++
T Consensus 58 ~~~~~~~~~~~~~~~~~g~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~ii 109 (120)
T 1va0_A 58 SEKQEEIHRLLLRHARAHPFVVRLKGGDPMVFGRGGEEVLFLLRHGVPVEVV 109 (120)
T ss_dssp --CHHHHHHHHHHHHHTSSEEEEEESBCTTSSSSHHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCEECHHHHHHHHHHHCCCCCCCC
T ss_conf 2679999999999852043023302675411027889999875123420147
No 116
>>2dgd_A 223AA long hypothetical arylmalonate decarboxylase; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii} (A:108-202)
Probab=50.72 E-value=14 Score=17.37 Aligned_cols=74 Identities=12% Similarity=0.024 Sum_probs=44.4
Q ss_pred HHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH----HCCCCEEEEECCCHHHHHHHHHH-HHCCC
Q ss_conf 57999889755956975345895378886543565329999999994----21158899983866589999999-98498
Q gi|254780936|r 63 LHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ----SEGLEHLVIFSGDGCFTTLVAAL-QRKVK 137 (182)
Q Consensus 63 ~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~----a~~~d~~iLvSGD~Df~pli~~l-r~~Gk 137 (182)
.....+.+...||+|.....-...+ ...=..++-.-..++... .+..|-++|.+..=--.+++..| ++.||
T Consensus 15 ~~~~~~~~~~~G~eV~~~~~lg~~~----~~~ia~i~~~~i~~~~~~~~~d~p~adAi~isCTnl~t~~~i~~lE~~lg~ 90 (95)
T 2dgd_A 15 TLEEVEWWRNKGFEIVGYDGLGKIR----GIDISNTPIFTIYRLVKRHLNEVLKADAVYIACTALSTYEAVQYLHEDLDX 90 (95)
T ss_dssp HHHHHHHHHTTTCEEEEEEECCCCS----HHHHHTCCHHHHHHHHHTTHHHHTTSSEEEECCTTSCCTTHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCEEEEEECCCCCCC----CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 7999999996790585300247565----421023999999999998540134687899941586478999999999898
Q ss_pred EEE
Q ss_conf 899
Q gi|254780936|r 138 KVT 140 (182)
Q Consensus 138 ~V~ 140 (182)
-|+
T Consensus 91 PVi 93 (95)
T 2dgd_A 91 PVV 93 (95)
T ss_dssp CEE
T ss_pred CEE
T ss_conf 999
No 117
>>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics, protein structure initiative; 2.35A {Agrobacterium tumefaciens str} (A:111-242)
Probab=50.07 E-value=18 Score=16.73 Aligned_cols=104 Identities=13% Similarity=-0.023 Sum_probs=65.0
Q ss_pred HHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH--
Q ss_conf 999998517929999997306887314677757999889755956975345895378886543565329999999994--
Q gi|254780936|r 32 KLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ-- 109 (182)
Q Consensus 32 ~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~-- 109 (182)
.+.+.+.+.+.-. ..|.+.+........+...|.+++...|..+..... ........-...++..
T Consensus 7 ~~~~~l~~~G~~~--i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 73 (132)
T 3gv0_A 7 EAVERLAQCGRKR--IAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDA-----------VTIETPLEKIRDFGQRLX 73 (132)
T ss_dssp HHHHHHHHTTCCE--EEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCS-----------CCTTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCC--EEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHH-----------CCCCCCHHHHHHHHHHHH
T ss_conf 7777763125340--368717743322566678889999986311003330-----------343211135778887654
Q ss_pred H-CCCCEEEEECCCHHHHHHHHHHHHCCCE----EEEEEEECCC
Q ss_conf 2-1158899983866589999999984988----9999831577
Q gi|254780936|r 110 S-EGLEHLVIFSGDGCFTTLVAALQRKVKK----VTIVSTVLSD 148 (182)
Q Consensus 110 a-~~~d~~iLvSGD~Df~pli~~lr~~Gk~----V~v~~~~~~~ 148 (182)
. ..--++++++.|.....+++.++++|.+ |-|+++....
T Consensus 74 ~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~ip~di~i~~fd~~~ 117 (132)
T 3gv0_A 74 QSSDRPDGIVSISGSSTIALVAGFEAAGVKIGEDVDIVSKQSAE 117 (132)
T ss_dssp TSSSCCSEEEESCHHHHHHHHHHHHTTTCCTTTSCEEEEEESST
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHH
T ss_conf 30357740011347888877888763330145422899967838
No 118
>>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor; HET: T6P; 2.50A {Escherichia coli} (A:99-223)
Probab=49.63 E-value=18 Score=16.69 Aligned_cols=100 Identities=10% Similarity=0.054 Sum_probs=63.7
Q ss_pred HHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH-C
Q ss_conf 999985179299999973068873146777579998897559569753458953788865435653299999999942-1
Q gi|254780936|r 33 LLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS-E 111 (182)
Q Consensus 33 L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a-~ 111 (182)
..+.+.+.+.-..++... ..........+...|.+++...|..+.... ...+..-...++.+. .
T Consensus 8 a~~~l~~~G~r~i~~i~~-~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~ 72 (125)
T 1byk_A 8 LMQRLYDQGHRNISYLGV-PHSDVTTGKRRHEAYLAFCKAHKLHPVAAL--------------PGLAMKQGYENVAKVIT 72 (125)
T ss_dssp HHHHHHHTTCCCEEEECC-CTTSTTTTHHHHHHHHHHHHHTTCCCEEEC--------------CCSCHHHHHHHSGGGCC
T ss_pred HHHHHHHHCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCC--------------CCCCHHHHHHHHHHHHC
T ss_conf 999999851144323576-667650777776779999997399762013--------------77878999999999713
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEEECC
Q ss_conf 15889998386658999999998498-8999983157
Q gi|254780936|r 112 GLEHLVIFSGDGCFTTLVAALQRKVK-KVTIVSTVLS 147 (182)
Q Consensus 112 ~~d~~iLvSGD~Df~pli~~lr~~Gk-~V~v~~~~~~ 147 (182)
.--++|++++|.--..++..+++.|. .|.|+++...
T Consensus 73 ~~~~ai~~~~d~~A~~~~~~l~~~gp~di~iv~fd~~ 109 (125)
T 1byk_A 73 PETTALLCATDTLALGASKYLQEQRIDTLQLASVGNT 109 (125)
T ss_dssp TTCCEEEESSHHHHHHHHHHHHHTTCCSCEEEEECCC
T ss_pred CCCCEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 5676001132466756899997608652223675981
No 119
>>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} (B:310-418)
Probab=49.26 E-value=18 Score=16.65 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=14.0
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 86658999999998498899998
Q gi|254780936|r 121 GDGCFTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 121 GD~Df~pli~~lr~~Gk~V~v~~ 143 (182)
-+.|+-.+.+.+++....+.+-+
T Consensus 61 ~~~d~~el~~~i~~~~pDliig~ 83 (109)
T 1mio_B 61 VEGDFFDVHQWIKNEGVDLLISN 83 (109)
T ss_dssp ESCBHHHHHHHHHHSCCSEEEES
T ss_pred ECCCHHHHHHHHHHCCCCEEEEC
T ss_conf 79999999999974499999979
No 120
>>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} (A:)
Probab=49.06 E-value=18 Score=16.63 Aligned_cols=85 Identities=11% Similarity=0.076 Sum_probs=52.9
Q ss_pred HHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 79998897559569753458953788865435653299999999942115889998386658999999998498899998
Q gi|254780936|r 64 HPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 64 ~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~ 143 (182)
+.....|...|+++.-...+.....-....+=.+ +-+.-..+|.++++........+++.+.+.|.+..++.
T Consensus 30 ~~v~~~l~~~g~~v~~v~p~~~~~ei~G~~~~~s--------l~eip~~iD~v~i~~p~~~~~~~i~e~~~~g~k~~~~~ 101 (145)
T 2duw_A 30 YRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYAT--------LADVPEKVDMVDVFRNSEAAWGVAQEAIAIGAKTLWLQ 101 (145)
T ss_dssp HHHHHHHHHHTCCEEEECSSSTTSEETTEECCSS--------TTTCSSCCSEEECCSCSTHHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHHHHHCCCEEEEECCCCCEEEEEEEECCCC--------HHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 9999999868986898524544125620622575--------44467621168995149999999999997299759952
Q ss_pred EECCCCCCCHHHHHHHCC
Q ss_conf 315776547089998521
Q gi|254780936|r 144 TVLSDPSMASDQLRRQAD 161 (182)
Q Consensus 144 ~~~~~~~~~S~~L~~~ad 161 (182)
.+.-+.++.+.|.
T Consensus 102 -----~~~~~e~~~~~a~ 114 (145)
T 2duw_A 102 -----LGVINEQAAVLAR 114 (145)
T ss_dssp -----TTCCCHHHHHHHH
T ss_pred -----CCHHHHHHHHHHH
T ss_conf -----4544199999999
No 121
>>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} (A:1-126,A:244-294)
Probab=48.44 E-value=19 Score=16.57 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=31.0
Q ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 99994211588999838665899999999849889999
Q gi|254780936|r 105 DAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 105 D~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
+.+-..+++|.+++.|..+...+.+..+-+.|+.|.+-
T Consensus 58 eell~~~~iDvViIatp~~~H~~~~~~al~~GkhVlvE 95 (177)
T 1lc0_A 58 EDALRSQEIDVAYICSESSSHEDYIRQFLQAGKHVLVE 95 (177)
T ss_dssp HHHHHCSSEEEEEECSCGGGHHHHHHHHHHTTCEEEEE
T ss_pred HHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEC
T ss_conf 99954999989999289566689999999759973420
No 122
>>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum atcc 13032} (A:1-125)
Probab=48.09 E-value=19 Score=16.54 Aligned_cols=38 Identities=13% Similarity=0.091 Sum_probs=31.5
Q ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 99994211588999838665899999999849889999
Q gi|254780936|r 105 DAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 105 D~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
+.+.....+|.+++.|.+....+.+..+-+.|+.|.+-
T Consensus 58 ~~~~~~~~~d~V~i~t~~~~h~~~~~~al~~g~~V~~E 95 (125)
T 3euw_A 58 DEVFARDDIDGIVIGSPTSTHVDLITRAVERGIPALCE 95 (125)
T ss_dssp HHHTTCSCCCEEEECSCGGGHHHHHHHHHHTTCCEEEC
T ss_pred HHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 99954899886641121010123321001222222135
No 123
>>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, signaling protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A* (A:170-304,A:441-482)
Probab=47.10 E-value=20 Score=16.44 Aligned_cols=100 Identities=10% Similarity=-0.040 Sum_probs=61.1
Q ss_pred HHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH-H
Q ss_conf 999998517929999997306887314677757999889755956975345895378886543565329999999994-2
Q gi|254780936|r 32 KLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ-S 110 (182)
Q Consensus 32 ~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~-a 110 (182)
.+...+...+--..+..|... .........|.+.+...|.++......... ...+..+..-+... .
T Consensus 7 aia~ll~~~gwk~VaII~~dd----~yG~~~~~~l~~~~~~~Gi~V~~~~~~~~~---------~~~~~d~~~~l~~i~~ 73 (177)
T 2e4u_A 7 AMAEILRFFNWTYVSTVASEG----DYGETGIEAFEQEARLRNICIATAEKVGRS---------NIRKSYDSVIRELLQK 73 (177)
T ss_dssp HHHHHHHHTTCCEEEEEEESS----TTHHHHHHHHHHHHHTTTCEEEEEEEECTT---------CCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCEEEEEEECC----HHHHHHHHHHHHHHHHCCCEEEEEEECCCC---------CCHHHHHHHHHHHHHC
T ss_conf 799999982995899998440----667799999999888648349999965788---------7577788877777652
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 1158899983866589999999984988999983
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVST 144 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~ 144 (182)
.+.+.+|+++.-.+...+++.+++.|.....++.
T Consensus 74 s~~~vVv~~~~~~~~~~il~~a~~~Gl~~~~I~s 107 (177)
T 2e4u_A 74 PNARVVVLFMRSDDSRELIAAANRVNASFTWVAS 107 (177)
T ss_dssp TTCCEEEEECCHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred CCCEEEEEEECCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 6870899972508999999999980887638997
No 124
>>3cvj_A Putative phosphoheptose isomerase; NP_244191.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125} (A:)
Probab=46.24 E-value=20 Score=16.36 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=29.3
Q ss_pred HHCCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEEE
Q ss_conf 421158899983866---589999999984988999983
Q gi|254780936|r 109 QSEGLEHLVIFSGDG---CFTTLVAALQRKVKKVTIVST 144 (182)
Q Consensus 109 ~a~~~d~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~ 144 (182)
....=|.+|++|.-| +.+.+++.+|++|.+|+.++-
T Consensus 105 ~~~~~dlvI~iS~sG~t~~~i~a~~~ak~~G~~vI~iT~ 143 (243)
T 3cvj_A 105 QVTNKDVIXIISNSGRNTVPVEXAIESRNIGAKVIAXTS 143 (243)
T ss_dssp TCCTTCEEEEECSSCCSHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 689899899977899989999999999986997999956
No 125
>>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* (A:1-152,A:366-444)
Probab=46.21 E-value=20 Score=16.36 Aligned_cols=31 Identities=13% Similarity=0.020 Sum_probs=28.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 1158899983866589999999984988999
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKKVTI 141 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v 141 (182)
+.+|.++|.|-+....|.+.++-+.||.|.+
T Consensus 90 ~~iD~V~IaTp~~~H~e~a~~AleaGKhV~v 120 (231)
T 2ixa_A 90 KNIDAVFVSSPWEWHHEHGVAAMKAGKIVGM 120 (231)
T ss_dssp TTCCEEEECCCGGGHHHHHHHHHHTTCEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCEEE
T ss_conf 8989899915500215789999862122354
No 126
>>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A* (A:1-216)
Probab=46.01 E-value=21 Score=16.34 Aligned_cols=94 Identities=9% Similarity=-0.094 Sum_probs=53.2
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCH
Q ss_conf 99999730688731467775799988975595697534589537888654356532999999999421158899983866
Q gi|254780936|r 44 IRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDG 123 (182)
Q Consensus 44 ~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~ 123 (182)
.+.+.|+. ...+..-..+...|...|..+..-. |.............=|.+|++|--|
T Consensus 61 ~rI~i~G~-----G~S~~~a~~~~~~l~~~g~~~~~~~-----------------~~~~~~~~~~~~~~~dvvi~iS~sG 118 (216)
T 2zj3_A 61 RRLILIAC-----GTSYHAGVATRQVLEELTELPVMVE-----------------LASDFLDRNTPVFRDDVCFFLSQSG 118 (216)
T ss_dssp SEEEEEEC-----HHHHHHHHHHHHHHHHHHCSCEEEE-----------------EHHHHHHTTCCCCTTEEEEEEESSS
T ss_pred CEEEEEEE-----HHHHHHHHHHHHHHHHHCCCCEEEE-----------------EEEECCCCCCCCCCCCEEEEEECCC
T ss_conf 97999996-----0799999999999999659877998-----------------6110001467788987799996688
Q ss_pred ---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCEE
Q ss_conf ---589999999984988999983157765470899985211151
Q gi|254780936|r 124 ---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMD 165 (182)
Q Consensus 124 ---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~ 165 (182)
+.+.+++.+|++|.+++.++-. ....|.+.||..+.
T Consensus 119 ~t~e~~~~~~~ak~~g~~~i~iT~~------~~s~l~~~ad~~~~ 157 (216)
T 2zj3_A 119 ETADTLMGLRYCKERGALTVGITNT------VGSSISRETDCGVH 157 (216)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEESC------TTCHHHHHSSEEEE
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECC------CCCCCCCCCCEEEE
T ss_conf 9778999999999879939999778------99865002773444
No 127
>>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichiisubsp} (B:475-637)
Probab=45.39 E-value=21 Score=16.28 Aligned_cols=116 Identities=11% Similarity=0.013 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 98999999851792999999730688731467775799988975595697534589537888654356532999999999
Q gi|254780936|r 29 DYRKLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFE 108 (182)
Q Consensus 29 d~~~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~ 108 (182)
.|..+.......+.-.++..-+ ..+...+.....-....|+..||++..-.. . + .-+..+
T Consensus 21 ~~e~lr~~~~~~~~~~~v~l~~--~~~~~~H~~g~~~~~~~l~~~G~~v~~lg~-------------~--~---p~~~~~ 80 (163)
T 1req_B 21 VFEQLMDRSTSVSERPKVFLAC--LGTRRDFGGREGFSSPVWHIAGIDTPQVEG-------------G--T---TAEIVE 80 (163)
T ss_dssp HHHHHHHHHHHSSSCCBCEEEE--CSCHHHHHHHHHHHHHHHHHTTCBCCEEEC-------------C--C---HHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHH--CCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-------------C--C---HHHHHH
T ss_conf 9999998688615781768870--586332104788888799844842035888-------------9--9---899999
Q ss_pred H--HCCCCEEEEECCCHH----HHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHH-CCCCEE
Q ss_conf 4--211588999838665----89999999984988999983157765470899985-211151
Q gi|254780936|r 109 Q--SEGLEHLVIFSGDGC----FTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQ-ADYFMD 165 (182)
Q Consensus 109 ~--a~~~d~~iLvSGD~D----f~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~-ad~fi~ 165 (182)
. ..+.|.++|.|.+.. +..+++.||+.|.++.++.-..... ....+|+++ +|.|+.
T Consensus 81 a~~~~~~d~i~ls~~~~~~~~~~~~~i~~lr~~~~~~~vi~GG~~~~-~~~~~~~~~G~D~~~~ 143 (163)
T 1req_B 81 AFKKSGAQVADLCSSAKVYAQQGLEVAKALKAAGAKALYLSGAFKEF-GDDAAEAEKLIDGRLF 143 (163)
T ss_dssp HHHHHTCSEEEEECCHHHHHHHHHHHHHHHHHTTCSEEEEESCGGGG-GGGHHHHHHHCCCEEC
T ss_pred HHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CCHHHHHHCCCCEEEC
T ss_conf 99865998899957861068889999999996699859997278874-2356899708760501
No 128
>>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} (A:1-146,A:319-398)
Probab=45.36 E-value=21 Score=16.28 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=30.9
Q ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 999421158899983866589999999984988999
Q gi|254780936|r 106 AFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTI 141 (182)
Q Consensus 106 ~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v 141 (182)
-+...+.+|.++|+|.+.-..+.+..+-+.||.|.+
T Consensus 79 el~~~~~iD~V~I~TPn~~H~eia~~al~aGkhVic 114 (226)
T 3dty_A 79 EARRADGIQAVSIATPNGTHYSITKAALEAGLHVVC 114 (226)
T ss_dssp HTTCTTCCSEEEEESCGGGHHHHHHHHHHTTCEEEE
T ss_pred HHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 863689840899769955765688986335850674
No 129
>>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} (A:1-129)
Probab=45.25 E-value=21 Score=16.27 Aligned_cols=35 Identities=11% Similarity=-0.034 Sum_probs=30.6
Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 94211588999838665899999999849889999
Q gi|254780936|r 108 EQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 108 ~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
-....+|.+++.|...-..+.+..+-+.||.|.+-
T Consensus 63 l~~~~~D~V~i~tp~~~h~~~~~~al~~g~~V~~E 97 (129)
T 3ip3_A 63 LEKEKPDILVINTVFSLNGKILLEALERKIHAFVE 97 (129)
T ss_dssp HHHHCCSEEEECSSHHHHHHHHHHHHHTTCEEEEC
T ss_pred HCCCCCCEEEEECCCCCCCCCEEEECCCCCEEEEC
T ss_conf 64889889998133233342111101333102641
No 130
>>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE NAP; 2.79A {Bacillus subtilis} (A:1-127,A:272-300)
Probab=45.14 E-value=21 Score=16.26 Aligned_cols=29 Identities=14% Similarity=0.323 Sum_probs=14.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 99983866589999999984988999983
Q gi|254780936|r 116 LVIFSGDGCFTTLVAALQRKVKKVTIVST 144 (182)
Q Consensus 116 ~iLvSGD~Df~pli~~lr~~Gk~V~v~~~ 144 (182)
+.++.||.=...+++.|...|.+|.++++
T Consensus 10 IaviGGD~r~~rva~sL~~~G~~V~~~gp 38 (156)
T 2rir_A 10 IAVIGGDARQLEIIRKLTEQQADIYLVGF 38 (156)
T ss_dssp EEEESBCHHHHHHHHHHHHTTCEEEEESC
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 99977877599999999978997999964
No 131
>>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrinogen-III methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} (A:1-130)
Probab=44.73 E-value=22 Score=16.22 Aligned_cols=45 Identities=18% Similarity=0.133 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHH-CCCCEEEEECCCHH----HHHHHHHHHHCCCEEEEE
Q ss_conf 3299999999942-11588999838665----899999999849889999
Q gi|254780936|r 98 MDVELAVDAFEQS-EGLEHLVIFSGDGC----FTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 98 ~Dv~laiD~~~~a-~~~d~~iLvSGD~D----f~pli~~lr~~Gk~V~v~ 142 (182)
..-..+-.+++.+ ..-++++|++||-- +..+++.++++|..|.++
T Consensus 77 ~~~~~~~~i~~~~~~g~~V~~l~~GDP~~~~~~~~l~~~~~~~g~~v~ii 126 (130)
T 1s4d_A 77 KQRDISLRLVELARAGNRVLRLKGGDPFVFGRGGEEALTLVEHQVPFRIV 126 (130)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEESBCTTSSSSHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 25678899999997799189994789840466899999998527865872
No 132
>>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} (A:124-242)
Probab=44.43 E-value=22 Score=16.19 Aligned_cols=109 Identities=10% Similarity=0.005 Sum_probs=66.2
Q ss_pred HHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH-
Q ss_conf 9999985179299999973068873146777579998897559569753458953788865435653299999999942-
Q gi|254780936|r 32 KLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS- 110 (182)
Q Consensus 32 ~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a- 110 (182)
.+.+++...+--..+..|.. ..........+...+++.|.++....... .+..|..= -+-++.
T Consensus 6 ~~~~~~~~~~~~~v~ii~~d----~~~g~~~~~~~~~~l~~~G~~iv~~~~~~----------~~~~d~~~--~i~~i~~ 69 (119)
T 3hut_A 6 NNAAWXIGDGFTSVAVIGVT----TDWGLSSAQAFRKAFELRGGAVVVNEEVP----------PGNRRFDD--VIDEIED 69 (119)
T ss_dssp HHHHHHHHTTCCEEEEEEES----SHHHHHHHHHHHHHHHHTTCEEEEEEEEC----------TTCCCCHH--HHHHHHH
T ss_pred HHHHHHHHCCCCEEEEEECC----CCHHHHHHHHHHHHHHCCCCEEEEEEECC----------CCCCCHHH--HHHHHHH
T ss_conf 99988876078169996056----72658999998644540697899999559----------98731158--9999986
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHC
Q ss_conf 11588999838665899999999849889999831577654708999852
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQA 160 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~a 160 (182)
.+.|.+++++.-.|...+++.+++.|.+..+++.. ..++..+.+.+
T Consensus 70 ~~~d~v~~~~~~~~~~~i~~~~~~~G~~~~~~~~~----~~~~~~~~~~~ 115 (119)
T 3hut_A 70 EAPQAIYLAXAYEDAAPFLRALRARGSALPVYGSS----ALYSPKFIDLG 115 (119)
T ss_dssp HCCSEEEEESCHHHHHHHHHHHHHTTCCCCEEECG----GGCSHHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEC----CCCCHHHHHHC
T ss_conf 59999999736688999999999819998656420----56776776402
No 133
>>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} (A:58-160,A:293-340)
Probab=44.35 E-value=22 Score=16.18 Aligned_cols=71 Identities=6% Similarity=0.011 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--CCCCEEEEECCCHHHHHHHHHHHHCCCEE
Q ss_conf 7579998897559569753458953788865435653299999999942--11588999838665899999999849889
Q gi|254780936|r 62 PLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS--EGLEHLVIFSGDGCFTTLVAALQRKVKKV 139 (182)
Q Consensus 62 ~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a--~~~d~~iLvSGD~Df~pli~~lr~~Gk~V 139 (182)
-.....+.+...|+.+.... .+-|.....+.++.. +++|-+||++.|.+-..+++.+++.|..|
T Consensus 19 l~~gi~~~a~~~g~~l~i~~--------------~~~~~e~~~~~i~~l~~~~vDGIIi~~~~~~~~~~~~~l~~~~IPv 84 (151)
T 1qpz_A 19 IIEAVEKNCFQKGYTLILGN--------------AWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPM 84 (151)
T ss_dssp HHHHHHHHHHHTTCEEEEEE--------------CTTCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHTTTTSCE
T ss_pred HHHHHHHHHHHCCCEEEEEC--------------CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCE
T ss_conf 99999999874895899941--------------5544489999999998548874898146787277888876148877
Q ss_pred EEEEEEC
Q ss_conf 9998315
Q gi|254780936|r 140 TIVSTVL 146 (182)
Q Consensus 140 ~v~~~~~ 146 (182)
+++....
T Consensus 85 V~id~~~ 91 (151)
T 1qpz_A 85 VVMDWGE 91 (151)
T ss_dssp EEEEESS
T ss_pred EEECCCC
T ss_conf 9833676
No 134
>>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase); archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrogenase; 2.05A {Sulfolobus solfataricus} (O:1-138,O:303-340)
Probab=44.08 E-value=22 Score=16.15 Aligned_cols=37 Identities=5% Similarity=-0.052 Sum_probs=31.7
Q ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 9994211588999838665899999999849889999
Q gi|254780936|r 106 AFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 106 ~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
..++..++|.+++.|++.--.+.+..+-+.||+|.+-
T Consensus 71 ~~ell~~vDvViiaTp~~~H~~~a~~al~~GkhVi~E 107 (176)
T 1b7g_O 71 VEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQ 107 (176)
T ss_dssp HHHHHHHCSEEEECCSTTHHHHHHHHHHHTTCEEEEC
T ss_pred CCCHHCCCCEEEECCCCCCCHHHHHHHHHCCCCCCEE
T ss_conf 7311127899998786655677899999759973020
No 135
>>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12} (A:122-254)
Probab=43.78 E-value=22 Score=16.12 Aligned_cols=103 Identities=13% Similarity=0.062 Sum_probs=65.9
Q ss_pred HHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH-
Q ss_conf 9999985179299999973068873146777579998897559569753458953788865435653299999999942-
Q gi|254780936|r 32 KLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS- 110 (182)
Q Consensus 32 ~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a- 110 (182)
.+.+.+.+.+.=.. .|.+.+........+.+.|.+++...|..+..... .....+..-..+++...
T Consensus 8 ~a~~~l~~~G~~~i--~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 74 (133)
T 3brq_A 8 NAVAELINAGHQEI--AFLTGSXDSPTSIERLAGYKDALAQHGIALNEKLI-----------ANGKWTPASGAEGVEXLL 74 (133)
T ss_dssp HHHHHHHHTTCCSE--EEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGE-----------ECCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEE--EEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEE-----------ECCCCCCCHHHHHHHHHH
T ss_conf 34455434036559--99957755653033545999999863987772035-----------326765210567779998
Q ss_pred --CCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEEEECC
Q ss_conf --115889998386658999999998498----8999983157
Q gi|254780936|r 111 --EGLEHLVIFSGDGCFTTLVAALQRKVK----KVTIVSTVLS 147 (182)
Q Consensus 111 --~~~d~~iLvSGD~Df~pli~~lr~~Gk----~V~v~~~~~~ 147 (182)
..--++|+++.|.=-.-++..+++.|. .+.|+++...
T Consensus 75 ~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vP~di~i~~~d~~ 117 (133)
T 3brq_A 75 ERGAKFSALVASNDDXAIGAXKALHERGVAVPEQVSVIGFDDI 117 (133)
T ss_dssp TC--CCSEEEESSHHHHHHHHHHHHHHTCCTTTTCEEEEESCC
T ss_pred HCCCCCCCCCCCCHHHHHHHEHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 5589987223588088842244366549878864000055671
No 136
>>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} (A:110-255)
Probab=43.25 E-value=23 Score=16.07 Aligned_cols=104 Identities=15% Similarity=0.076 Sum_probs=62.1
Q ss_pred HHHHHHHCCEEE-EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH-
Q ss_conf 999985179299-999973068873146777579998897559569753458953788865435653299999999942-
Q gi|254780936|r 33 LLKAFRSRAIVI-RAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS- 110 (182)
Q Consensus 33 L~~~l~~~~~l~-~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a- 110 (182)
+.+.+...+.-. +..+..+..........+...|.++|+..|+.+....... ....|..-+.+++...
T Consensus 12 ~~~~li~~G~~h~~i~~i~~~~~~~~~~~~R~~gf~~al~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 81 (146)
T 8abp_A 12 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP----------TKSNDIPGAFDAANSML 81 (146)
T ss_dssp HHHHHHHHTCCGGGEEEEEEECTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEE----------CSSSSHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC----------CCCHHHHHHHHHHHHHH
T ss_conf 99983633576760699972898770899999999999997499754333321----------11013678889999743
Q ss_pred ---CCCC-EEEEECCCHHHHHHHHHHHHCCC---EEEEEEEEC
Q ss_conf ---1158-89998386658999999998498---899998315
Q gi|254780936|r 111 ---EGLE-HLVIFSGDGCFTTLVAALQRKVK---KVTIVSTVL 146 (182)
Q Consensus 111 ---~~~d-~~iLvSGD~Df~pli~~lr~~Gk---~V~v~~~~~ 146 (182)
+..+ ++|++++|.=-..+++.+++.|. .+.++++..
T Consensus 82 ~~~~~~~~~ai~~~nd~~a~g~~~~l~~~g~~p~di~iigfD~ 124 (146)
T 8abp_A 82 VQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 124 (146)
T ss_dssp TTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCGGGEEEEEESS
T ss_pred HCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 1168764046532234889987889998643578606998469
No 137
>>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum} (A:175-320)
Probab=42.12 E-value=24 Score=15.96 Aligned_cols=82 Identities=9% Similarity=-0.038 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH---HHCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 31467775799988975595697534589537888654356532999999999---421158899983866589999999
Q gi|254780936|r 56 PEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFE---QSEGLEHLVIFSGDGCFTTLVAAL 132 (182)
Q Consensus 56 ~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~---~a~~~d~~iLvSGD~Df~pli~~l 132 (182)
......+...|.+++...|........... ...+..-...++. ....--++|+++.|.--..+++.+
T Consensus 44 ~~~~~~R~~G~~~al~~~g~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~aii~~~d~~A~~~~~~l 113 (146)
T 3h5t_A 44 YQVQRDRVRGAMEVFIEAGIDPGTVPIMEC----------WINNRQHNFEVAKELLETHPDLTAVLCTVDALAFGVLEYL 113 (146)
T ss_dssp CTTHHHHHHHHHHHHHHHTCCGGGSCEEEE----------SSCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCC----------CCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHH
T ss_conf 445566667899998861356554322356----------7654777999999876404788378607889999889999
Q ss_pred HHCCC----EEEEEEEECC
Q ss_conf 98498----8999983157
Q gi|254780936|r 133 QRKVK----KVTIVSTVLS 147 (182)
Q Consensus 133 r~~Gk----~V~v~~~~~~ 147 (182)
+++|. .+.|+++...
T Consensus 114 ~~~g~~ip~di~vi~fd~~ 132 (146)
T 3h5t_A 114 KSVGKSAPADLSLTGFDGT 132 (146)
T ss_dssp HHTTCCTTTTCEEEEEECC
T ss_pred HHCCCCCCCCEEEEEECCC
T ss_conf 9839998998799998965
No 138
>>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} (A:1-115)
Probab=41.85 E-value=24 Score=15.94 Aligned_cols=47 Identities=17% Similarity=0.092 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHH-CCCCEEEEECCCHH----HHHHHHHHHHCCCEEEEE
Q ss_conf 653299999999942-11588999838665----899999999849889999
Q gi|254780936|r 96 SSMDVELAVDAFEQS-EGLEHLVIFSGDGC----FTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 96 k~~Dv~laiD~~~~a-~~~d~~iLvSGD~D----f~pli~~lr~~Gk~V~v~ 142 (182)
.....+.+-.+.+.+ +.-++++|++||-= ...+++.+++.|..|.++
T Consensus 61 ~~~~~~~~~~i~~~~~~g~~V~~l~~GDP~~~~~~~~l~~~~~~~~~~veii 112 (115)
T 1ve2_A 61 KTPQEAITARLIALAREGRVVARLKGGDPMVFGRGGEEALALRRAGIPFEVV 112 (115)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEEESBCTTSSTTHHHHHHHHHHHTCCEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 1339999999999997798676741543312242889999974067875997
No 139
>>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A (A:1-125)
Probab=41.58 E-value=24 Score=15.91 Aligned_cols=37 Identities=14% Similarity=0.060 Sum_probs=31.2
Q ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 9994211588999838665899999999849889999
Q gi|254780936|r 106 AFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 106 ~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
-+-....+|.+++.|..+--.+.+..+-+.|+.|.+-
T Consensus 59 ~l~~~~~~d~v~i~t~~~~h~~~~~~al~~G~~V~~E 95 (125)
T 3i23_A 59 ELLTDPEIELITICTPAHTHYDLAKQAILAGKSVIVE 95 (125)
T ss_dssp HHHSCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEC
T ss_pred HHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 9965999888998788024568999999849908740
No 140
>>2poc_A D-fructose-6-, isomerase domain of glutamine-fructose-6- phosphate transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans SC5314} PDB: 2put_A* 2puv_A* 2puw_A* (A:207-367)
Probab=41.16 E-value=21 Score=16.24 Aligned_cols=47 Identities=2% Similarity=0.015 Sum_probs=30.1
Q ss_pred HCCCCEEEEECCCH---H-HHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCC
Q ss_conf 21158899983866---5-89999999984988999983157765470899985211
Q gi|254780936|r 110 SEGLEHLVIFSGDG---C-FTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADY 162 (182)
Q Consensus 110 a~~~d~~iLvSGD~---D-f~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~ 162 (182)
...=|.+|++|..+ + ...+++.++++|.+|++++.... ..|...||.
T Consensus 62 ~~~~d~vi~iS~sg~t~e~~~~~~~~~k~~g~~vi~It~~~~------s~l~~~~~~ 112 (161)
T 2poc_A 62 VDEDLPIIAFATRDSLFPKVMSAIEQVTARDGRPIVICNEGD------AIISNDKVH 112 (161)
T ss_dssp ----CCEEEECCGGGCCHHHHHHHHHHHHTTCCCEEEEETTC------CSCC---CC
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCC------HHCCCCCCC
T ss_conf 569974478835871034445479999966981899993784------010345543
No 141
>>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} (A:1-128,A:240-273)
Probab=41.02 E-value=25 Score=15.86 Aligned_cols=55 Identities=11% Similarity=0.041 Sum_probs=39.1
Q ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCC
Q ss_conf 999421158899983866589999999984988999983157765470899985211
Q gi|254780936|r 106 AFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADY 162 (182)
Q Consensus 106 ~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~ 162 (182)
.......+|.++++|-++-..+.+.+..+.|+.|.+-. .+.---..++|.++|.+
T Consensus 66 ~~~~~~~~DvVii~tp~~~H~~~~~~al~aG~~Vi~EK--pa~t~~~~~~l~eaa~k 120 (162)
T 1dih_A 66 LDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGT--TGFDEAGKQAIRDAAAD 120 (162)
T ss_dssp STTTTTSCSEEEECSCHHHHHHHHHHHHHTTCEEEECC--CCCCHHHHHHHHHHTTT
T ss_pred HHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEC--CCCCHHHHHHHHHHCCC
T ss_conf 88834678889989888999999999998199989967--98999999999996478
No 142
>>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S- adenosylmethionine; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A* (A:1-133)
Probab=41.00 E-value=19 Score=16.50 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=31.7
Q ss_pred HHHHHHHHH-CCCCEEEEECCCHH----HHHHHHHHHHCCCEEEEE
Q ss_conf 999999942-11588999838665----899999999849889999
Q gi|254780936|r 102 LAVDAFEQS-EGLEHLVIFSGDGC----FTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 102 laiD~~~~a-~~~d~~iLvSGD~D----f~pli~~lr~~Gk~V~v~ 142 (182)
++-.+.+.+ ..-++++|++||-= +..+++.++++|..|.++
T Consensus 85 ~~~~i~~~~~~G~~V~~l~~GDP~i~~~~~~l~~~~~~~gi~v~ii 130 (133)
T 2e0n_A 85 NYASMAEEVQAGRRVAVVSVGDGGFYSTASAIIERARRDGLDCSMT 130 (133)
T ss_dssp GHHHHHHHHHTTCEEEEEESBCTTBSCTHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCCCHHEECCCCCCCCEEEEEC
T ss_conf 5567899860897147863544321142101101123442026976
No 143
>>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 1.97A {Lactobacillus brevis atcc 367} (A:107-223)
Probab=40.75 E-value=25 Score=15.83 Aligned_cols=100 Identities=10% Similarity=-0.012 Sum_probs=60.3
Q ss_pred HHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH---
Q ss_conf 99999851792999999730688731467775799988975595697534589537888654356532999999999---
Q gi|254780936|r 32 KLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFE--- 108 (182)
Q Consensus 32 ~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~--- 108 (182)
.+.+.+.+.+.-..++... ..........+...|.+++...|...... ...+..-....+.
T Consensus 7 ~a~~~L~~~G~~~i~~i~~-~~~~~~~~~~r~~g~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~ 70 (117)
T 3jy6_A 7 AATTAFRQQGYQHVVVLTS-ELELSRTRQERYRGILAAAQDVDVLEVSE---------------SSYNHSEVHQRLTQLI 70 (117)
T ss_dssp HHHHHHHTTTCCEEEEEEE-CSTTCHHHHHHHHHHHTTCSEEEEEEECS---------------SSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCEEEEC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCC---------------CCCCHHHHHHHHHHHH
T ss_conf 4233233202430027704-71000478887589999986469753234---------------5531789999999876
Q ss_pred HHCCCCEEEEECCCHHHHHHHHHHHHCCCE----EEEEEEECC
Q ss_conf 421158899983866589999999984988----999983157
Q gi|254780936|r 109 QSEGLEHLVIFSGDGCFTTLVAALQRKVKK----VTIVSTVLS 147 (182)
Q Consensus 109 ~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~----V~v~~~~~~ 147 (182)
....--++|+++.|.--..++..+++.|.+ +.++++...
T Consensus 71 ~~~~~~~ai~~~~d~~a~~~l~~~~~~g~~iP~di~ivgfdd~ 113 (117)
T 3jy6_A 71 TQNDQKTVAFALKERWLLEFFPNLIISGLIDNQTVTATGFADT 113 (117)
T ss_dssp HSSSSCEEEEESSHHHHHHHSHHHHHSSSCCSSSEEEEEBCCC
T ss_pred HHCCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf 4211000011222013443345666652257763112466886
No 144
>>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} (A:1-85,A:181-251,A:332-399)
Probab=40.70 E-value=25 Score=15.83 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHHHHH-----CCCCEEEEECCCHH
Q ss_conf 653299999999942-----11588999838665
Q gi|254780936|r 96 SSMDVELAVDAFEQS-----EGLEHLVIFSGDGC 124 (182)
Q Consensus 96 k~~Dv~laiD~~~~a-----~~~d~~iLvSGD~D 124 (182)
.+++|.|-+|..+.. .....-|+.||-=|
T Consensus 120 ~~i~v~l~~d~~~~~~~~~~~~~~~~viytG~iD 153 (224)
T 1v0j_A 120 HRIEVRLNTDWFDVRGQLRPGSPAAPVVYTGPLD 153 (224)
T ss_dssp TTEEEECSCCHHHHHHHHTTTSTTCCEEECSCHH
T ss_pred CCCEEECCCCEEEEECCCCCCCCCCCEECCCCCC
T ss_conf 4854751771466301112355455220168700
No 145
>>2d59_A Hypothetical protein PH1109; COA binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.65A {Pyrococcus horikoshii OT3} (A:)
Probab=40.63 E-value=25 Score=15.82 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=51.2
Q ss_pred HHHHHHHHHCCCEEEEEEEEEE-CCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 7999889755956975345895-378886543565329999999994211588999838665899999999849889999
Q gi|254780936|r 64 HPLLDWLHYNGFQVVAKVAKEF-TENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 64 ~~~~~~l~~~g~~v~~~~~~~~-~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
......|...|+.+....-... ..+. .+=.+ .-+.-..+|.++++..+..-..+++.+.+.|.+..++
T Consensus 39 ~~v~~~l~~~G~~V~~V~p~~~~i~g~---~~~~s--------l~elp~~~Dlv~i~~p~~~~~~i~~e~~~~g~k~v~~ 107 (144)
T 2d59_A 39 NIVMKYLLEHGYDVYPVNPKYEEVLGR---KCYPS--------VLDIPDKIEVVDLFVKPKLTMEYVEQAIKKGAKVVWF 107 (144)
T ss_dssp HHHHHHHHHTTCEEEEECTTCSEETTE---ECBSS--------GGGCSSCCSEEEECSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHCCC---CCCCC--------CCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEE
T ss_conf 999999997899899989733300797---45664--------2014676507999858899999999999729999999
Q ss_pred EEECCCCCCCHHHHHHHCC
Q ss_conf 8315776547089998521
Q gi|254780936|r 143 STVLSDPSMASDQLRRQAD 161 (182)
Q Consensus 143 ~~~~~~~~~~S~~L~~~ad 161 (182)
. .+..+.++.+.|-
T Consensus 108 ~-----~~g~~e~~~~~a~ 121 (144)
T 2d59_A 108 Q-----YNTYNREASKKAD 121 (144)
T ss_dssp C-----TTCCCHHHHHHHH
T ss_pred E-----CCCCCHHHHHHHH
T ss_conf 4-----2644999999999
No 146
>>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis} (A:)
Probab=40.61 E-value=25 Score=15.82 Aligned_cols=43 Identities=7% Similarity=-0.148 Sum_probs=17.2
Q ss_pred HHHHHHHHCCEEEEEEEE-ECCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 999998517929999997-306887314677757999889755956975
Q gi|254780936|r 32 KLLKAFRSRAIVIRAYYY-TTVVGDPEQQFSPLHPLLDWLHYNGFQVVA 79 (182)
Q Consensus 32 ~L~~~l~~~~~l~~~~~y-~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~ 79 (182)
.++..+.+.+.-+.+..+ .+...+.... .-.......|.....
T Consensus 18 ~~l~ll~~~g~~v~~v~~~~g~~~~~~~~-----~~~~~~~~lg~~~~~ 61 (219)
T 3bl5_A 18 TCLLWALKEFEEVETVTFHYNQRHSQEVE-----VAKSIAEKLGVKNHL 61 (219)
T ss_dssp HHHHHHHHHCSEEEEEEEESSCTTCHHHH-----HHHHHHHTTCCCEEE
T ss_pred HHHHHHHHCCCEEEEEEEECCCCCHHHHH-----HHHHHHHHCCCCEEE
T ss_conf 99999998399189999878988737999-----999999984996587
No 147
>>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} (A:171-304)
Probab=40.44 E-value=25 Score=15.80 Aligned_cols=106 Identities=12% Similarity=-0.041 Sum_probs=59.7
Q ss_pred HHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 99998517929999997306887314677757999889755956975345895378886543565329999999994211
Q gi|254780936|r 33 LLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEG 112 (182)
Q Consensus 33 L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~ 112 (182)
+.+.+.+.+.=..++... ..........+...|.+++...|.............. ...........+.....
T Consensus 8 a~~~L~~~G~~~i~~i~~-~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 79 (134)
T 3e3m_A 8 MTNALLARGFRKIVFLGE-KDDDWTRGAARRAGFKRAMREAGLNPDQEIRLGAPPL-------SIEDGVAAAELILQEYP 79 (134)
T ss_dssp HHHHHHHTTCCSEEEEEE-SSCTTSHHHHHHHHHHHHHHHTTSCSCCEEEESCSSC-------CHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHCCCCEEEEECC-CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH-------HHHHHHHHHHHHHHHCC
T ss_conf 999999849974999817-8755540799986058999862026542221111202-------45555566666665146
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE----EEEEEEEC
Q ss_conf 58899983866589999999984988----99998315
Q gi|254780936|r 113 LEHLVIFSGDGCFTTLVAALQRKVKK----VTIVSTVL 146 (182)
Q Consensus 113 ~d~~iLvSGD~Df~pli~~lr~~Gk~----V~v~~~~~ 146 (182)
--++|++++|.=-..++..+++.|.+ +.++++..
T Consensus 80 ~~~ai~~~~d~~a~~~~~~l~~~g~~vP~di~iigfd~ 117 (134)
T 3e3m_A 80 DTDCIFCVSDMPAFGLLSRLKSIGVAVPEQVSVVGFGN 117 (134)
T ss_dssp TCCEEEESSHHHHHHHHHHHHHHTCCTTTTCEEECSSC
T ss_pred CCCEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECC
T ss_conf 75069860671156588999864998898469999898
No 148
>>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,, transport protein; HET: BGC; 0.92A {Escherichia coli} (A:1-112,A:258-309)
Probab=40.34 E-value=25 Score=15.79 Aligned_cols=67 Identities=15% Similarity=0.115 Sum_probs=50.0
Q ss_pred HHHHHHHHHC-CCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH--HCCCCEEEEECCCHH-HHHHHHHHHHCCCEE
Q ss_conf 7999889755-956975345895378886543565329999999994--211588999838665-899999999849889
Q gi|254780936|r 64 HPLLDWLHYN-GFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ--SEGLEHLVIFSGDGC-FTTLVAALQRKVKKV 139 (182)
Q Consensus 64 ~~~~~~l~~~-g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~--a~~~d~~iLvSGD~D-f~pli~~lr~~Gk~V 139 (182)
....++++.+ |+.+.... ..-|..--...++. ++++|-+|+.+.|.+ ..|.++.+++.|..|
T Consensus 22 ~gi~~~a~~~~g~~l~~~~--------------~~~d~~~q~~~i~~li~~~vDgIIi~~~d~~~~~~~i~~a~~agIPv 87 (164)
T 2fvy_A 22 KAIEQDAKAAPDVQLLMND--------------SQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPV 87 (164)
T ss_dssp HHHHHHHHTCTTEEEEEEE--------------CTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHHHHTTTCCE
T ss_pred HHHHHHHHHCCCCEEEEEC--------------CCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCE
T ss_conf 9999999876993799975--------------99999999999999997599889971321013699999998459630
Q ss_pred EEEEE
Q ss_conf 99983
Q gi|254780936|r 140 TIVST 144 (182)
Q Consensus 140 ~v~~~ 144 (182)
+.+..
T Consensus 88 V~vn~ 92 (164)
T 2fvy_A 88 VFFNK 92 (164)
T ss_dssp EEESS
T ss_pred ECCCC
T ss_conf 00365
No 149
>>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis W83} (A:1-126,A:258-289)
Probab=39.84 E-value=26 Score=15.74 Aligned_cols=36 Identities=14% Similarity=0.038 Sum_probs=30.4
Q ss_pred HHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 994211588999838665899999999849889999
Q gi|254780936|r 107 FEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 107 ~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
+...+.+|.+++.|.+..-.+.+..+-+.||.|.+-
T Consensus 60 ~~~~~~~D~V~I~tp~~~H~e~a~~al~~GkhV~~E 95 (158)
T 3bio_A 60 IEQLESVDVALVCSPSREVERTALEILKKGICTADS 95 (158)
T ss_dssp GGGSSSCCEEEECSCHHHHHHHHHHHHTTTCEEEEC
T ss_pred HHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCEEEC
T ss_conf 997258982698178365699999999879979999
No 150
>>1xx6_A Thymidine kinase; X-RAY, NESG, northeast structural genomics consortium, protein structure initiative, PSI; HET: ADP; 2.00A {Clostridium acetobutylicum atcc 824} (A:1-147)
Probab=39.53 E-value=26 Score=15.71 Aligned_cols=62 Identities=13% Similarity=0.104 Sum_probs=44.7
Q ss_pred HHHHHH-CCCCEEEEECC---CHHHHHHHHHHHHCCCEEEEEEEECCCCC---CCHHHHHHHCCCCEEH
Q ss_conf 999942-11588999838---66589999999984988999983157765---4708999852111518
Q gi|254780936|r 105 DAFEQS-EGLEHLVIFSG---DGCFTTLVAALQRKVKKVTIVSTVLSDPS---MASDQLRRQADYFMDL 166 (182)
Q Consensus 105 D~~~~a-~~~d~~iLvSG---D~Df~pli~~lr~~Gk~V~v~~~~~~~~~---~~S~~L~~~ad~fi~l 166 (182)
|+.+.. .++|.+.+==+ |.|.+..+..+...|+.|++.|-...+++ -.+..|...||+...|
T Consensus 73 ~i~~~~~~~~dvI~IDE~QFf~~~~v~~~~~l~~~g~~Vi~aGLd~df~~~~F~~~~~L~~~ad~i~kl 141 (147)
T 1xx6_A 73 EILKYFEEDTEVIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDXDFRGKPFGPIPELXAIAEFVDKI 141 (147)
T ss_dssp HHHHHCCTTCSEEEECSGGGSCTHHHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEEC
T ss_pred HHHHHHCCCCCEEEEECHHHCCCCHHHHHHHEECCCCEEEEEEEECHHHHCCHHHHHHHHHHCCCEEEE
T ss_conf 012210355889998124323651788855110146268999753221326077799999615709998
No 151
>>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,, transport protein; HET: BGC; 0.92A {Escherichia coli} (A:113-257)
Probab=39.43 E-value=26 Score=15.70 Aligned_cols=89 Identities=13% Similarity=0.093 Sum_probs=58.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH---H-CC-CCEEEEECC
Q ss_conf 997306887314677757999889755956975345895378886543565329999999994---2-11-588999838
Q gi|254780936|r 47 YYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ---S-EG-LEHLVIFSG 121 (182)
Q Consensus 47 ~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~---a-~~-~d~~iLvSG 121 (182)
..+...+........+...|.++|...|..+....... ...+..-+.+++.. . .. --.+|++++
T Consensus 31 i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 99 (145)
T 2fvy_A 31 FVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDT-----------AMWDTAQAKDKMDAWLSGPNANKIEVVIANN 99 (145)
T ss_dssp EEEEECSTTCHHHHHHHHHHHHHHHHTTCCEEEEEEEE-----------CTTCHHHHHHHHHHHHTSTTGGGCCEEEESS
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE-----------CCCHHHHHHHHHHHHHHHHCCCCCCEEECCC
T ss_conf 99994786665057777779999986298632323662-----------2112678888888766553147763101120
Q ss_pred CHHHHHHHHHHHHCCC-EEEEEEEEC
Q ss_conf 6658999999998498-899998315
Q gi|254780936|r 122 DGCFTTLVAALQRKVK-KVTIVSTVL 146 (182)
Q Consensus 122 D~Df~pli~~lr~~Gk-~V~v~~~~~ 146 (182)
|.=-..+++.|+++|. .|.|+++..
T Consensus 100 d~~a~~~~~al~~~gp~di~ivg~D~ 125 (145)
T 2fvy_A 100 DAMAMGAVEALKAHNKSSIPVFGVDA 125 (145)
T ss_dssp HHHHHHHHHHHHHTTCTTSCEECSBC
T ss_pred HHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 47778999999980999880674578
No 152
>>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, protein structure initiative; 2.14A {Rhodococcus jostii RHA1} (A:110-239)
Probab=39.00 E-value=26 Score=15.66 Aligned_cols=102 Identities=14% Similarity=0.058 Sum_probs=61.9
Q ss_pred HHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH---
Q ss_conf 99999851792999999730688731467775799988975595697534589537888654356532999999999---
Q gi|254780936|r 32 KLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFE--- 108 (182)
Q Consensus 32 ~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~--- 108 (182)
...+.+.+.+.-..++... +. ......+.+.|.+++...|..+..... ..+.+..-...++.
T Consensus 7 ~a~~~L~~~G~r~i~~i~~--~~-~~~~~~r~~g~~~a~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~ 71 (130)
T 3k9c_A 7 LAVDHLTELGHRNIAHIDG--AD-APGGADRRAGFLAAXDRHGLSASATVV------------TGGTTETEGAEGXHTLL 71 (130)
T ss_dssp HHHHHHHHTTCCSEEEECC--TT-STTHHHHHHHHHHHHHHTTCGGGEEEE------------CCCSSHHHHHHHHHHHH
T ss_pred HHHHHEECCCCCCEEEECC--CC-CCCHHHHHHHHHHHHHHHCCCCCCCCC------------CCCCCHHHHHHHHHHHH
T ss_conf 0122100023531121012--24-653125778898888763255421223------------45664136788999987
Q ss_pred HHCCCCEEEEECCCHHHHHHHHHHHHCCCEE----EEEEEECCC
Q ss_conf 4211588999838665899999999849889----999831577
Q gi|254780936|r 109 QSEGLEHLVIFSGDGCFTTLVAALQRKVKKV----TIVSTVLSD 148 (182)
Q Consensus 109 ~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V----~v~~~~~~~ 148 (182)
....--++|+++.|.--..+++.+++.|.+| -|+++....
T Consensus 72 ~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~iP~di~ii~fd~~~ 115 (130)
T 3k9c_A 72 EXPTPPTAVVAFNDRCATGVLDLLVRSGRDVPADISVVGYDDSR 115 (130)
T ss_dssp TSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECCT
T ss_pred HCCCCCCHHHCCCHHHCCCCEEECCCCCCEEEECCCCCCCCCHH
T ss_conf 50357513321410211442000014684455222245656717
No 153
>>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} (A:127-259,A:340-385)
Probab=38.80 E-value=27 Score=15.64 Aligned_cols=111 Identities=8% Similarity=-0.022 Sum_probs=64.6
Q ss_pred HHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH-
Q ss_conf 9999985179299999973068873146777579998897559569753458953788865435653299999999942-
Q gi|254780936|r 32 KLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS- 110 (182)
Q Consensus 32 ~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a- 110 (182)
.+.+++...+--..+..|.. ...-......|.+.+++.|.++.......+ +.....+.--+....
T Consensus 4 al~~~l~~~g~kkVaiI~~d----~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~----------~~~~~D~~~~i~~i~~ 69 (179)
T 1pea_A 4 PLAAYLIRHYGERVVFIGSD----YIYPRESNHVMRHLYRQHGGTVLEEIYIPL----------YPSDDDLQRAVERIYQ 69 (179)
T ss_dssp HHHHHHHTTTCSEEEEEEES----SHHHHHHHHHHHHHHHHTTCEEEEEEEECS----------SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEECCC----CCCCHHHHHHHHHHHHHCCCCEEEEEECCC----------CCCCCHHHHHHHHHHH
T ss_conf 99999987178479982267----762355655466666641683578996167----------6442016899999875
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEEEECCCCCCCHHHHHHHC
Q ss_conf 115889998386658999999998498--89999831577654708999852
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVK--KVTIVSTVLSDPSMASDQLRRQA 160 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk--~V~v~~~~~~~~~~~S~~L~~~a 160 (182)
.+.|.++++....|.+.+++.+++.|. ++.+++. ....+..+...+
T Consensus 70 ~~pd~Vi~~~~~~~~~~~l~qa~~~Gl~~~~~ii~~----~~~~~~~~~~~~ 117 (179)
T 1pea_A 70 ARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIAS----LTTSEAEVAKME 117 (179)
T ss_dssp HTCSEEEEECCTHHHHHHHHHHHHHHCSSCCCCEEE----SSCCHHHHTTSC
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHHCCCCCCEEEEE----CCCCCHHHHHHC
T ss_conf 189989999634779999999998479988649996----677667776323
No 154
>>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} (A:1-119)
Probab=38.72 E-value=2.3 Score=22.34 Aligned_cols=30 Identities=7% Similarity=-0.063 Sum_probs=27.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEE
Q ss_conf 115889998386658999999998498899
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKKVT 140 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~ 140 (182)
..+|.+|+-.|=..-.|.+.+++++|..|+
T Consensus 79 ~~~D~vV~SPgi~~~~p~i~~a~~~gi~i~ 108 (119)
T 3hn7_A 79 PAPDLVVVGNAXKRGXDVIEYXLDTGLRYT 108 (119)
T ss_dssp SCCSEEEECTTCCTTSHHHHHHHHHTCCEE
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHCCCCEE
T ss_conf 999789989954999999999998799787
No 155
>>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} (A:1-127)
Probab=38.60 E-value=27 Score=15.62 Aligned_cols=37 Identities=5% Similarity=-0.128 Sum_probs=31.1
Q ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 9994211588999838665899999999849889999
Q gi|254780936|r 106 AFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 106 ~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
.+-....+|.+++.|......+.+..+-+.|+.|.+-
T Consensus 60 ~~~~~~~~d~v~i~t~~~~h~~~~~~al~~g~~v~~E 96 (127)
T 2p2s_A 60 QLITDASIDLIACAVIPCDRAELALRTLDAGKDFFTA 96 (127)
T ss_dssp HHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEC
T ss_pred HHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9954999898998422323200222222111100024
No 156
>>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} (A:)
Probab=38.43 E-value=27 Score=15.61 Aligned_cols=82 Identities=18% Similarity=0.142 Sum_probs=51.8
Q ss_pred HHHHHHHHHCCCEEEEEEEEE-ECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 799988975595697534589-5378886543565329999999994211588999838665899999999849889999
Q gi|254780936|r 64 HPLLDWLHYNGFQVVAKVAKE-FTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 64 ~~~~~~l~~~g~~v~~~~~~~-~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
......|...|+.+....-+. ...+ ....+. .-+.-..+|.++++..+.-...+++.+.+.|.+-.++
T Consensus 31 ~~i~~~l~~~g~~v~~Vnp~~~~i~g--~~~y~s---------l~di~~~vDl~vi~vp~~~~~~~v~ea~~~gi~~~~~ 99 (138)
T 1y81_A 31 NIILKDLLSKGFEVLPVNPNYDEIEG--LKCYRS---------VRELPKDVDVIVFVVPPKVGLQVAKEAVEAGFKKLWF 99 (138)
T ss_dssp HHHHHHHHHTTCEEEEECTTCSEETT--EECBSS---------GGGSCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCC--CCCCCC---------CCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999789979997155431479--735556---------4113433206899807899999999998569988985
Q ss_pred EEECCCCCCCHHHHHHHCC
Q ss_conf 8315776547089998521
Q gi|254780936|r 143 STVLSDPSMASDQLRRQAD 161 (182)
Q Consensus 143 ~~~~~~~~~~S~~L~~~ad 161 (182)
- .+..+.++.+.|-
T Consensus 100 ~-----~~g~~e~~~~~a~ 113 (138)
T 1y81_A 100 Q-----PGAESEEIRRFLE 113 (138)
T ss_dssp C-----TTSCCHHHHHHHH
T ss_pred E-----CCCCCHHHHHHHH
T ss_conf 0-----6601899999999
No 157
>>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, hydrolase, inner membrane, membrane; 2.10A {Escherichia coli K12} (A:)
Probab=38.10 E-value=27 Score=15.57 Aligned_cols=33 Identities=27% Similarity=0.248 Sum_probs=27.7
Q ss_pred EEEEECCCH-HHHHHHHHHHHCCCEEEEEEEECC
Q ss_conf 899983866-589999999984988999983157
Q gi|254780936|r 115 HLVIFSGDG-CFTTLVAALQRKVKKVTIVSTVLS 147 (182)
Q Consensus 115 ~~iLvSGD~-Df~pli~~lr~~Gk~V~v~~~~~~ 147 (182)
-++-++|+. +...++..|+++|..|.+++-..+
T Consensus 67 l~v~l~G~~~~~~~ai~~L~~~~v~vevi~~v~~ 100 (106)
T 3dhx_A 67 MLTEMHGTQQDTQAAIAWLQEHHVKVEVLGYVLE 100 (106)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCEEEEEEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEE
T ss_conf 9999629989999999999985985999214312
No 158
>>2d13_A Hypothetical protein PH1257; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Pyrococcus horikoshii} (A:1-124)
Probab=37.88 E-value=27 Score=15.55 Aligned_cols=36 Identities=22% Similarity=0.160 Sum_probs=17.6
Q ss_pred HHHHHHCCCCEEEEECC--CHHHHH--HHHHHHHCCCEEE
Q ss_conf 99994211588999838--665899--9999998498899
Q gi|254780936|r 105 DAFEQSEGLEHLVIFSG--DGCFTT--LVAALQRKVKKVT 140 (182)
Q Consensus 105 D~~~~a~~~d~~iLvSG--D~Df~p--li~~lr~~Gk~V~ 140 (182)
+..+.+..++.-.+++| ..|... +.+.+++.|.+..
T Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~l 120 (124)
T 2d13_A 81 DLKNVLEGLKVDGIVAGALASRYQKERIENVARELGLKVY 120 (124)
T ss_dssp HHHHHHHTBCCSEEECCCSSCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 9999999618865998200117889999988987296898
No 159
>>3a24_A Alpha-galactosidase; glycoside hydrolase family 97, retaining glycosidase; HET: MES; 2.30A {Bacteroides thetaiotaomicron} (A:271-452)
Probab=37.39 E-value=23 Score=16.00 Aligned_cols=61 Identities=13% Similarity=0.065 Sum_probs=37.3
Q ss_pred HHHHHHHHH--CCCCEEEEECC------C--------HHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCC
Q ss_conf 999999942--11588999838------6--------6589999999984988999983157765470899985211
Q gi|254780936|r 102 LAVDAFEQS--EGLEHLVIFSG------D--------GCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADY 162 (182)
Q Consensus 102 laiD~~~~a--~~~d~~iLvSG------D--------~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~ 162 (182)
-+..+++.+ ..++.++|=.| | .|+-+++++++++|.++.+.....+..+..+...+..++.
T Consensus 40 ~~~~~~~~~~~~g~~~~~iDdgW~~~~~~~~~~~~fp~glk~l~~~~~~~G~k~glW~~~~~~~~~~~~~~~~~~~~ 116 (182)
T 3a24_A 40 TYKAYIDFASANGIEYVILDEGWAVNLQADLMQVVKEIDLKELVDYAASKNVGIILWAGYHAFERDMENVCRHYAEM 116 (182)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTSBCTTSCCTTCBCTTCCHHHHHHHHHHTTCEEEEEEEHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHC
T ss_conf 99999999998799779999860579766654136876769999999976976999935650667699999987763
No 160
>>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET: GLP MES; 1.57A {Escherichia coli} (A:1-210)
Probab=37.23 E-value=28 Score=15.49 Aligned_cols=95 Identities=7% Similarity=-0.089 Sum_probs=51.1
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCH
Q ss_conf 99999730688731467775799988975595697534589537888654356532999999999421158899983866
Q gi|254780936|r 44 IRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDG 123 (182)
Q Consensus 44 ~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~ 123 (182)
.+.+.|+. ...+.....+...|...|..+.... |.............=|.+|++|.-|
T Consensus 53 ~~I~i~G~-----G~S~~~a~~~~~~l~~~g~~~~~~~-----------------~~~~~~~~~~~~~~~d~vI~iS~sG 110 (210)
T 1moq_A 53 EHIQILAC-----GTSYNSGMVSRYWFESLAGIPCDVE-----------------IASEFRYRKSAVRRNSLMITLSQSG 110 (210)
T ss_dssp CEEEEEEC-----HHHHHHHHHHHHHHHHHSCCCEEEE-----------------EHHHHHTSCCCCCTTEEEEEEESSS
T ss_pred CEEEEEEC-----HHHHHHHHHHHHHHHHHCCCCEEEE-----------------ECCHHHCCCCCCCCCCEEEEECCCC
T ss_conf 88999964-----1899999999999998548432998-----------------0606532477779997899977889
Q ss_pred ---HHHHHHHHHHHCCC-EEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf ---58999999998498-89999831577654708999852111518
Q gi|254780936|r 124 ---CFTTLVAALQRKVK-KVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 124 ---Df~pli~~lr~~Gk-~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
+.+.+++.++++|. .|.+++.. ....|...||.++.+
T Consensus 111 ~t~e~~~~~~~a~~~g~~~ii~~t~~------~~s~l~~~~d~~l~~ 151 (210)
T 1moq_A 111 ETADTLAGLRLSKELGYLGSLAICNV------PGSSLVRESDLALMT 151 (210)
T ss_dssp CCHHHHHHHHHHTTTTCSEEEEEESS------TTCHHHHHSSEEEEC
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEECC------CCCHHHHHCCCEEEC
T ss_conf 96799999999997699718999899------999889964820540
No 161
>>2bde_A Cytosolic IMP-GMP specific 5'-nucleotidase; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.90A {Legionella pneumophila} (A:1-28,A:186-325,A:428-470)
Probab=37.14 E-value=28 Score=15.48 Aligned_cols=67 Identities=10% Similarity=0.100 Sum_probs=40.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCE
Q ss_conf 5435653299999999942115889998386658999999998498899998315776547089998521115
Q gi|254780936|r 92 KRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFM 164 (182)
Q Consensus 92 ~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi 164 (182)
....++++ +..++...-.-=||-=||.=|-.++.--+..|.+...+..+-.. ...+..|....|..+
T Consensus 121 VYsgGn~~-----~l~~llg~~G~~VLYvGDHIysDIl~skk~~gWRT~lIIpELe~-E~~~~~~~~~~~~~f 187 (211)
T 2bde_A 121 VYQGGNAK-----KFTEDLGVGGDEILYIGDHIYGDILRLKKDCNWRTALVVECIYX-EKLSDLLEHSPXTYF 187 (211)
T ss_dssp EEEECCHH-----HHHHHTTCCGGGEEEEESSCCSCHHHHHHHHCSEEEEECTSEEE-SSHHHHHHSCTTCEE
T ss_pred EEECCCHH-----HHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEHHHHHH-HHHHHHHCCCCCCEE
T ss_conf 66246899-----99999678899158988872054541333069846876598877-137688559954074
No 162
>>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} (A:1-210)
Probab=36.40 E-value=29 Score=15.41 Aligned_cols=31 Identities=10% Similarity=0.088 Sum_probs=28.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 1158899983866589999999984988999
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKKVTI 141 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v 141 (182)
..+|.+++.|.+.-..+.+..+-+.||.|.+
T Consensus 149 ~~vD~V~iatp~~~h~~~~~~al~~Gk~V~~ 179 (210)
T 1h6d_A 149 PKIDAVYIILPNSLHAEFAIRAFKAGKHVMC 179 (210)
T ss_dssp TTCCEEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCCEEE
T ss_conf 9998899919879999999999987996762
No 163
>>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} (A:1-125)
Probab=36.35 E-value=29 Score=15.40 Aligned_cols=38 Identities=11% Similarity=0.084 Sum_probs=31.4
Q ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 99994211588999838665899999999849889999
Q gi|254780936|r 105 DAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 105 D~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
+.+.....+|.+++.|.+.-..+.+..+-+.|+.|.+-
T Consensus 58 ~~l~~~~~id~v~i~~~~~~h~~~~~~al~~G~~v~~E 95 (125)
T 3f4l_A 58 DEVLNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLVE 95 (125)
T ss_dssp HHHHTCTTEEEEEECSCGGGHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCCCCEEEECCCCHHCCCHHHHHHCCCHHHHCC
T ss_conf 99956999889985043100000567763210232214
No 164
>>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center for structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} (A:1-127)
Probab=35.93 E-value=30 Score=15.36 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=32.5
Q ss_pred HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 999994211588999838665899999999849889999
Q gi|254780936|r 104 VDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 104 iD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
.+.+.....+|.+++.|...-..+.+..+-+.||.|.+-
T Consensus 59 ~~~~l~~~~id~v~i~t~~~~h~~~~~~~l~~gk~v~~e 97 (127)
T 3kux_A 59 PQXLFNDPSIDLIVIPTPNDTHFPLAQSALAAGKHVVVD 97 (127)
T ss_dssp HHHHHHCSSCCEEEECSCTTTHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEECC
T ss_conf 999956999988999288378788888998739876026
No 165
>>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcription, transcription regulation; 2.35A {Burkholderia thailandensis E264} (A:1-108,A:241-291)
Probab=35.89 E-value=30 Score=15.36 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--CCCCEEEEECCCHHHHHHHHHHHHCCCE
Q ss_conf 77579998897559569753458953788865435653299999999942--1158899983866589999999984988
Q gi|254780936|r 61 SPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS--EGLEHLVIFSGDGCFTTLVAALQRKVKK 138 (182)
Q Consensus 61 ~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a--~~~d~~iLvSGD~Df~pli~~lr~~Gk~ 138 (182)
.-...+.+++.+.|+.+...+ .+.|.....+.++.. .++|.+|+++.+.+- +.++.+++.|..
T Consensus 25 ~ii~gie~aa~~~Gy~l~i~~--------------~~~d~e~~~~~l~~l~~~~vDGIII~~~~~~~-~~i~~l~~~giP 89 (159)
T 3egc_A 25 EVASGVESEARHKGYSVLLAN--------------TAEDIVREREAVGQFFERRVDGLILAPSEGEH-DYLRTELPKTFP 89 (159)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE--------------CTTCHHHHHHHHHHHHHTTCSEEEECCCSSCC-HHHHHSSCTTSC
T ss_pred HHHHHHHHHHHHCCCEEEEEE--------------CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCH-HHHHHHHHHCCC
T ss_conf 999999999998699899996--------------89997999999999985697388531012110-158999863355
Q ss_pred EEEEEEE
Q ss_conf 9999831
Q gi|254780936|r 139 VTIVSTV 145 (182)
Q Consensus 139 V~v~~~~ 145 (182)
|+++...
T Consensus 90 vV~id~~ 96 (159)
T 3egc_A 90 IVAVNRE 96 (159)
T ss_dssp EEEESSC
T ss_pred CCCCCCC
T ss_conf 4223455
No 166
>>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} (A:)
Probab=35.64 E-value=30 Score=15.33 Aligned_cols=85 Identities=8% Similarity=0.142 Sum_probs=51.5
Q ss_pred HHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 79998897559569753458953788865435653299999999942115889998386658999999998498899998
Q gi|254780936|r 64 HPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 64 ~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~ 143 (182)
.....+|.+.|+.+.-.+..... ......+.. -+.-+.-..+|.++++..+.-...+++.+.+.|.+..++.
T Consensus 30 ~~v~~~L~~~g~~~~~~~p~~~~---~~i~g~~~~-----~sl~~~~~~~D~vvi~vp~~~~~~~l~e~~~~g~~~~~~~ 101 (140)
T 1iuk_A 30 HYVPRYLREQGYRVLPVNPRFQG---EELFGEEAV-----ASLLDLKEPVDILDVFRPPSALMDHLPEVLALRPGLVWLQ 101 (140)
T ss_dssp HHHHHHHHHTTCEEEEECGGGTT---SEETTEECB-----SSGGGCCSCCSEEEECSCHHHHTTTHHHHHHHCCSCEEEC
T ss_pred HHHHHHHHHCCCEEEEECCCCCC---CEECCEEEE-----CCHHHCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 99999997289838997876764---255682752-----5567758997289998088998999999996498989989
Q ss_pred EECCCCCCCHHHHHHHCC
Q ss_conf 315776547089998521
Q gi|254780936|r 144 TVLSDPSMASDQLRRQAD 161 (182)
Q Consensus 144 ~~~~~~~~~S~~L~~~ad 161 (182)
.+.-+.++.+.|-
T Consensus 102 -----~g~~~e~~~~~~~ 114 (140)
T 1iuk_A 102 -----SGIRHPEFEKALK 114 (140)
T ss_dssp -----TTCCCHHHHHHHH
T ss_pred -----CCCCCHHHHHHHH
T ss_conf -----8977999999999
No 167
>>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901} (A:)
Probab=35.47 E-value=30 Score=15.31 Aligned_cols=84 Identities=14% Similarity=0.114 Sum_probs=56.0
Q ss_pred HHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEC-C-CH-HHHHHHHHHHHC-CCEE
Q ss_conf 799988975595697534589537888654356532999999999421158899983-8-66-589999999984-9889
Q gi|254780936|r 64 HPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFS-G-DG-CFTTLVAALQRK-VKKV 139 (182)
Q Consensus 64 ~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvS-G-D~-Df~pli~~lr~~-Gk~V 139 (182)
......|+..|+++... .+..-|++++.....+|.+++=. - |+ |-..+++.+++. ...|
T Consensus 19 ~~l~~~L~~~g~~v~~a-----------------~~~~~al~~l~~~~~~dlvilD~~l~~~~dg~el~~~i~~~~~~pi 81 (140)
T 3h5i_A 19 KTIANILNKYGYTVEIA-----------------LTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPV 81 (140)
T ss_dssp HHHHHHHHHTTCEEEEE-----------------SSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCE
T ss_pred HHHHHHHHCCCEEEEEE-----------------CCCHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCE
T ss_conf 99999985088699997-----------------2637889987504565499971343211379999999985699989
Q ss_pred EEEEEECCCCCCCHHHHHHHCCCCEE
Q ss_conf 99983157765470899985211151
Q gi|254780936|r 140 TIVSTVLSDPSMASDQLRRQADYFMD 165 (182)
Q Consensus 140 ~v~~~~~~~~~~~S~~L~~~ad~fi~ 165 (182)
++++ ..+......+.+..-++.|+.
T Consensus 82 i~lt-~~~~~~~~~~~~~~G~~~~l~ 106 (140)
T 3h5i_A 82 VFLT-AHTEPAVVEKIRSVTAYGYVM 106 (140)
T ss_dssp EEEE-SSSSCCCCGGGGGSCEEEEEE
T ss_pred EEEE-CCCCHHHHHHHHHCCCCEEEE
T ss_conf 9998-999999999999779998998
No 168
>>1wyz_A Putative S-adenosylmethionine-dependent methytransferase; northeast structural genomics consortium, BTR28; 2.50A {Bacteroides thetaiotaomicron vpi-5482} (A:1-120)
Probab=35.37 E-value=30 Score=15.30 Aligned_cols=46 Identities=17% Similarity=0.023 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHH-HH-CCCCEEEEECCCH----HHHHHHHHHHHCCCEEEEE
Q ss_conf 532999999999-42-1158899983866----5899999999849889999
Q gi|254780936|r 97 SMDVELAVDAFE-QS-EGLEHLVIFSGDG----CFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 97 ~~Dv~laiD~~~-~a-~~~d~~iLvSGD~----Df~pli~~lr~~Gk~V~v~ 142 (182)
.....-..+++. .+ ..-+++++.|||- -+..+++++++.|..|+++
T Consensus 67 ~~~~~~~~~~~~~~~~~g~~v~~l~~GDP~~y~~~~~l~~~~~~~gi~v~vi 118 (120)
T 1wyz_A 67 HTSPEDISGYLKPLAGGASXGVISEAGCPAVADPGADVVAIAQRQKLKVIPL 118 (120)
T ss_dssp SCCHHHHHHHHHHHHTTCCEEEECC-------CHHHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCCEECCHHHHHHHHHHCCCCCCCCC
T ss_conf 6777766666688753963999962243102252565333321134220002
No 169
>>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} (A:1-130)
Probab=35.27 E-value=30 Score=15.29 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=33.6
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 9999994211588999838665899999999849889999
Q gi|254780936|r 103 AVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 103 aiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
.++.+.....+|.+++.|....-.+.+..+-+.||.|.+-
T Consensus 62 ~~~~~~~~~~vD~V~i~tp~~~~~~~~~~~l~~g~~v~~e 101 (130)
T 2fp4_A 62 TVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVC 101 (130)
T ss_dssp SHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 5999974124305763143034578898865446778999
No 170
>>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacterthermautotrophicus str} (A:1-131)
Probab=35.17 E-value=30 Score=15.28 Aligned_cols=44 Identities=20% Similarity=0.119 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHH-CCCCEEEEECCCHH----HHHHHHHHHHCCCEEEEE
Q ss_conf 299999999942-11588999838665----899999999849889999
Q gi|254780936|r 99 DVELAVDAFEQS-EGLEHLVIFSGDGC----FTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 99 Dv~laiD~~~~a-~~~d~~iLvSGD~D----f~pli~~lr~~Gk~V~v~ 142 (182)
-.+++-.+.+.+ ..-++++|++||.= +..+++.+++.|..|.++
T Consensus 80 ~~~~~~~i~~~~~~g~~V~~l~~GDP~~y~~~~~l~~~~~~~gi~v~vI 128 (131)
T 2qbu_A 80 WDSAARMVAAELEDGRDVAFITLGDPSIYSTFSYLQQRIEDMGFKTEMV 128 (131)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEESBCTTBSCSHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEE
T ss_conf 9999999999986798799983443211133012455543257736999
No 171
>>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein structure initiative; HET: MSE; 1.46A {Bacteroides thetaiotaomicron vpi-5482} (A:)
Probab=34.88 E-value=31 Score=15.26 Aligned_cols=34 Identities=12% Similarity=-0.025 Sum_probs=26.9
Q ss_pred CCCCEEEEECC--------CHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 11588999838--------66589999999984988999983
Q gi|254780936|r 111 EGLEHLVIFSG--------DGCFTTLVAALQRKVKKVTIVST 144 (182)
Q Consensus 111 ~~~d~~iLvSG--------D~Df~pli~~lr~~Gk~V~v~~~ 144 (182)
+..+..|++-| |+++.+.++.+++.|.++.++..
T Consensus 38 ~~~~V~vv~~g~gv~~~~~~~~~~~~i~~l~~~GV~~~aC~~ 79 (117)
T 2fb6_A 38 WWKHINIILWGASVKLVANDTQVQTEILEXLQSGITIEACQD 79 (117)
T ss_dssp SCSEEEEEECSHHHHHHHHCHHHHHHHHHHHHHTCEEEEEHH
T ss_pred CCCEEEEEEECHHHHHHHCCCHHHHHHHHHHHCCCEEEHHHH
T ss_conf 987699999886889874396589999999987998859799
No 172
>>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase family, NAD-binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum ms-1} (A:1-130,A:276-315)
Probab=34.41 E-value=31 Score=15.21 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=36.9
Q ss_pred HHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCC---HHHHHHHCCC
Q ss_conf 9942115889998386658999999998498899998315776547---0899985211
Q gi|254780936|r 107 FEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMA---SDQLRRQADY 162 (182)
Q Consensus 107 ~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~---S~~L~~~ad~ 162 (182)
+-....+|.++|.|.+.-..+.+..+-+.||.|.+- ++. ..+ .++|.+.|.+
T Consensus 64 ll~~~~iD~VvIatp~~~H~e~a~~al~aGkhVl~E---KPl-a~~~ee~~eL~~~a~~ 118 (170)
T 3c1a_A 64 VVSAPEVEAVIIATPPATHAEITLAAIASGKAVLVE---KPL-TLDLAEAEAVAAAAKA 118 (170)
T ss_dssp HHTCTTCCEEEEESCGGGHHHHHHHHHHTTCEEEEE---SSS-CSCHHHHHHHHHHHHH
T ss_pred HHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHCC---CCC-CCCCCCCCCCHHHHHH
T ss_conf 971746441001233001223210000233110125---453-2111223320123320
No 173
>>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum} (A:162-293)
Probab=34.25 E-value=31 Score=15.19 Aligned_cols=103 Identities=10% Similarity=-0.043 Sum_probs=62.4
Q ss_pred HHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH---
Q ss_conf 99999851792999999730688731467775799988975595697534589537888654356532999999999---
Q gi|254780936|r 32 KLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFE--- 108 (182)
Q Consensus 32 ~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~--- 108 (182)
.+.+.+.+.+.=..++.. .+. ......+.+.|.+++...|..+....... .+..+.......+.
T Consensus 7 ~a~~~L~~~G~r~i~~i~--~~~-~~~~~~R~~gf~~a~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 73 (132)
T 3h5o_A 7 AITRHLLSRGKRRIGFLG--AQL-DERVXKRLDGYRAALDAADCRDAGLEWLD----------PQPSSXQXGADXLDRAL 73 (132)
T ss_dssp HHHHHHHHTTCCSEEEEE--ESC-CHHHHHHHHHHHHHHHHTTCCCGGGEEEE----------CSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEEE--ECC-CCCCCCHHHHHHHHHHHCCCCCCCCEEEC----------CCCHHHHHHHHHHHHHH
T ss_conf 999999975997087864--026-65422000256777763045543100002----------46236778999999999
Q ss_pred HHCCCCEEEEECCCHHHHHHHHHHHHCCCE----EEEEEEECC
Q ss_conf 421158899983866589999999984988----999983157
Q gi|254780936|r 109 QSEGLEHLVIFSGDGCFTTLVAALQRKVKK----VTIVSTVLS 147 (182)
Q Consensus 109 ~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~----V~v~~~~~~ 147 (182)
.....-+++++++|.--..+++.++++|.+ |.|+++...
T Consensus 74 ~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vP~di~ii~fd~~ 116 (132)
T 3h5o_A 74 AERPDCDALFCCNDDLAIGALARSQQLGIAVPERLAIAGFNDL 116 (132)
T ss_dssp HHCTTCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECSBCC
T ss_pred HCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf 5499983899726456665434687639988986799998982
No 174
>>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.65A {Thermotoga maritima} (A:1-183)
Probab=33.91 E-value=32 Score=15.16 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=6.8
Q ss_pred CCCCCEEEEEEEHH
Q ss_conf 87887189998078
Q gi|254780936|r 2 FDPREKIALFIDGA 15 (182)
Q Consensus 2 ~~~~~rvaIfID~~ 15 (182)
+.+.+|+.|.+=|+
T Consensus 11 ~~~~~kvvv~~SGG 24 (183)
T 1vl2_A 11 HHMKEKVVLAYSGG 24 (183)
T ss_dssp ---CCEEEEECCSS
T ss_pred CCCCCEEEEEECCC
T ss_conf 24437099992897
No 175
>>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str} (A:115-251)
Probab=33.50 E-value=32 Score=15.12 Aligned_cols=105 Identities=9% Similarity=-0.041 Sum_probs=63.7
Q ss_pred HHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHH-HHHHHH
Q ss_conf 9999985179299999973068873146777579998897559569753458953788865435653299999-999942
Q gi|254780936|r 32 KLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAV-DAFEQS 110 (182)
Q Consensus 32 ~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~lai-D~~~~a 110 (182)
.+.+.+.+.+.-.. .|.+.+........+...|.+++...|..+......... ....+..... .++...
T Consensus 7 ~~~~~L~~~G~r~i--~~i~~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 76 (137)
T 3kke_A 7 IATEHLITLGHSRI--AFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVDAG--------WEADAGSAALNTLYRGA 76 (137)
T ss_dssp HHHHHHHHTTCCSE--EEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEECC--------SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCE--EECCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCC--------CCHHHHHHHHHHHHHHH
T ss_conf 99999998287727--742688777459999999999999819975413320456--------67578999999999877
Q ss_pred ----CCCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEEEEC
Q ss_conf ----115889998386658999999998498----899998315
Q gi|254780936|r 111 ----EGLEHLVIFSGDGCFTTLVAALQRKVK----KVTIVSTVL 146 (182)
Q Consensus 111 ----~~~d~~iLvSGD~Df~pli~~lr~~Gk----~V~v~~~~~ 146 (182)
..--++|+++.|.--..+++.+++.|. .|.|+++..
T Consensus 77 ~~~~~~~~~aii~~~d~~a~~~~~~l~~~g~~ip~di~i~~fd~ 120 (137)
T 3kke_A 77 NLGKPDGPTAVVVASVNAAVGALSTALRLGLRVPEDLSIVGINT 120 (137)
T ss_dssp CTTSTTSCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEESC
T ss_pred HHHCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 75246798689966768899999999983986555627997588
No 176
>>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreductase, porphyrin biosynthesis; 2.30A {Bacillus megaterium} (A:1-126)
Probab=33.32 E-value=31 Score=15.26 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=29.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 115889998386658999999998498899998
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~ 143 (182)
.++|.+|..+||-+..+.+..+++.|+-|.++.
T Consensus 90 ~~adivi~~t~~~~~~~~~~~~~~~~~~v~~v~ 122 (126)
T 3dfz_A 90 LNVFFIVVATNDQAVNKFVKQHIKNDQLVNMAS 122 (126)
T ss_dssp SSCSEEEECCCCTHHHHHHHHHSCTTCEEEC--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEECC
T ss_conf 896099977898899999999987668824679
No 177
>>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} (A:620-714,A:864-972)
Probab=33.10 E-value=33 Score=15.07 Aligned_cols=37 Identities=3% Similarity=0.065 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHH----CCCCEEEEECCCHHHHHHHHHH
Q ss_conf 653299999999942----1158899983866589999999
Q gi|254780936|r 96 SSMDVELAVDAFEQS----EGLEHLVIFSGDGCFTTLVAAL 132 (182)
Q Consensus 96 k~~Dv~laiD~~~~a----~~~d~~iLvSGD~Df~pli~~l 132 (182)
.+.|......+++.. ..-.++|++|=|-|++..+.++
T Consensus 109 sgLD~~~~~~l~~~L~~L~~~G~TVIiVtHdl~~i~~aDrI 149 (204)
T 2r6f_A 109 TGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYI 149 (204)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEE
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEE
T ss_conf 68879999999999999997699999991789999759999
No 178
>>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} (A:1-123,A:263-323)
Probab=32.95 E-value=33 Score=15.06 Aligned_cols=32 Identities=16% Similarity=0.148 Sum_probs=28.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 11588999838665899999999849889999
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
+.+|.++|.|.++...+.+..+-+.||.|.+-
T Consensus 62 ~~iDaV~I~tp~~~H~~ia~~aL~aGkhVlvE 93 (184)
T 1xea_A 62 YGVDAVXIHAATDVHSTLAAFFLHLGIPTFVD 93 (184)
T ss_dssp GCCSEEEECSCGGGHHHHHHHHHHTTCCEEEE
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCHHHHHC
T ss_conf 89999996034321122332112322133303
No 179
>>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis} (A:105-237)
Probab=32.81 E-value=33 Score=15.04 Aligned_cols=101 Identities=6% Similarity=-0.060 Sum_probs=58.8
Q ss_pred HHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH----H
Q ss_conf 999851792999999730688731467775799988975595697534589537888654356532999999999----4
Q gi|254780936|r 34 LKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFE----Q 109 (182)
Q Consensus 34 ~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~----~ 109 (182)
.+++.+...-.+...+...+........+...|.+++...|........ ..+.+..-+..++. .
T Consensus 9 ~~~L~~~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~ 76 (133)
T 2ioy_A 9 AEFIAKALKGKGNVVELEGIPGASAARDRGKGFDEAIAKYPDIKIVAKQ------------AADFDRSKGLSVMENILQA 76 (133)
T ss_dssp HHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHTTCTTEEEEEEE------------ECTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE------------CCCCCHHHHHHHHHHHHHC
T ss_conf 9999986699987999979999869999999999999878998057775------------1641179999999999856
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEEECC
Q ss_conf 2115889998386658999999998498-8999983157
Q gi|254780936|r 110 SEGLEHLVIFSGDGCFTTLVAALQRKVK-KVTIVSTVLS 147 (182)
Q Consensus 110 a~~~d~~iLvSGD~Df~pli~~lr~~Gk-~V~v~~~~~~ 147 (182)
.+..| .|++++|.=-..+++.+++.|. .|.++++...
T Consensus 77 ~~~~~-~i~~~~d~~a~g~~~al~~~gp~di~iig~d~~ 114 (133)
T 2ioy_A 77 QPKID-AVFAQNDEMALGAIKAIEAANRQGIIVVGFDGT 114 (133)
T ss_dssp CSCCC-EEEESSHHHHHHHHHHHHHTTCCCCEEEEEECC
T ss_pred CCCCC-EEEECCCHHHHHHHHHHHHHCCCCCEEEEECCH
T ss_conf 96983-999678088887799999819998779985370
No 180
>>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 2i2f_A* 2q5f_A* (A:1-93)
Probab=32.59 E-value=33 Score=15.02 Aligned_cols=39 Identities=13% Similarity=0.316 Sum_probs=26.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCC
Q ss_conf 158899983866589999999984988999983157765
Q gi|254780936|r 112 GLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPS 150 (182)
Q Consensus 112 ~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~~~ 150 (182)
++|.+|.+-||+=|..+++.+...+..+-++++.-|.-+
T Consensus 35 ~~D~vi~iGGDGT~L~a~~~~~~~~~~~pv~gin~G~lG 73 (93)
T 2i2c_A 35 EPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLG 73 (93)
T ss_dssp SCSEEEEEESHHHHHHHHHHTGGGTTTCEEEEEESSSCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 998999989729999999986551589749986142001
No 181
>>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} (T:1-19,T:58-205)
Probab=32.54 E-value=18 Score=16.65 Aligned_cols=54 Identities=15% Similarity=0.067 Sum_probs=35.8
Q ss_pred HHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH
Q ss_conf 7999889755956975345895378886543565329999999994211588999838665899999
Q gi|254780936|r 64 HPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVA 130 (182)
Q Consensus 64 ~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~ 130 (182)
......|...|+.++..| .-.+|-.++.-+-.-...-..++++|+|.|+..++.
T Consensus 59 ~~~~~~l~~~gi~~i~ap-------------g~EADd~~a~L~~~~~~d~~d~~i~s~Dkdl~~l~~ 112 (167)
T 1bgx_T 59 ALIKELVDLLGLARLEVP-------------GYEADDVLASLAKKAEKEGYEVRILTADKDLYQLLS 112 (167)
T ss_dssp GTHHHHHHHTTCCCCCCS-------------SSCHHHHHHHHHHHHHHHTCCBCCCCSSTTCCTTCC
T ss_pred HHHHHHHHHCCCCEEEEC-------------CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
T ss_conf 999999997899899478-------------935999999999999977994999838987050487
No 182
>>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} (A:1-133,A:305-362)
Probab=32.13 E-value=34 Score=14.97 Aligned_cols=53 Identities=8% Similarity=0.050 Sum_probs=37.1
Q ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCC---HHHHHHHCCC
Q ss_conf 99942115889998386658999999998498899998315776547---0899985211
Q gi|254780936|r 106 AFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMA---SDQLRRQADY 162 (182)
Q Consensus 106 ~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~---S~~L~~~ad~ 162 (182)
.+-..+.+|.+++.|-+.-..+.+..+-++||.|.+= ++. ..+ .++|.++|.+
T Consensus 65 ~ll~d~~vD~V~Iatp~~~H~~~a~~al~~GkhVl~E---KPl-a~s~~e~~eL~~~a~~ 120 (191)
T 1ydw_A 65 SLLEDPEIDALYVPLPTSLHVEWAIKAAEKGKHILLE---KPV-AXNVTEFDKIVDACEA 120 (191)
T ss_dssp HHHHCTTCCEEEECCCGGGHHHHHHHHHTTTCEEEEC---SSC-SSSHHHHHHHHHHHHT
T ss_pred HHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHEECC---CCC-CCHHHHHHHHHHHHHC
T ss_conf 9955999888997123344443222234433000003---342-1003677889987631
No 183
>>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid binding, structural genomics; HET: Z99 NAG; 1.90A {Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* (A:181-319,A:446-496)
Probab=32.08 E-value=34 Score=14.97 Aligned_cols=101 Identities=11% Similarity=0.036 Sum_probs=62.0
Q ss_pred HHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH-
Q ss_conf 9999985179299999973068873146777579998897559569753458953788865435653299999999942-
Q gi|254780936|r 32 KLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS- 110 (182)
Q Consensus 32 ~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a- 110 (182)
.+.+.+...+=-..+..|. +...-......|.+.++..|+.+........ .....+......+.+..
T Consensus 7 Al~~li~~fgW~~V~iI~~----d~~YG~~~~~~f~~~~~~~gi~I~~~~~~~~--------~~~~~~~d~~~~l~~i~~ 74 (190)
T 3ks9_A 7 AMLDIVKRYNWTYVSAVHT----EGNYGESGMDAFKELAAQEGLSIAHSDKIYS--------NAGEKSFDRLLRKLRERL 74 (190)
T ss_dssp HHHHHHHHTTCCEEEEEEE----SSHHHHHHHHHHHHHHHHTTCEEEEEEEECT--------TCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCCEEEEEEE----CCHHHHHHHHHHHHHHHHCCCEEEEEEEECC--------CCCHHHHHHHHHHHHHHH
T ss_conf 9999998629978999995----3678889999999999975987999998268--------998789999999988740
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEEE
Q ss_conf 115889998386658999999998498---8999983
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVK---KVTIVST 144 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk---~V~v~~~ 144 (182)
.+.+.+|+++...+...+++.+++.|. .+++.+.
T Consensus 75 ~~a~vVv~~~~~~~~~~il~~a~~~gltg~~~wI~sd 111 (190)
T 3ks9_A 75 PKARVVVCFCEGMTVRGLLSAMRRLGVVGEFSLIGSD 111 (190)
T ss_dssp TTTCEEEEECCHHHHHHHHHHHHHHTCCSCCEEEECT
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 2642799984679999999999983455762499965
No 184
>>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} (A:1-127,A:277-330)
Probab=32.06 E-value=34 Score=14.97 Aligned_cols=48 Identities=13% Similarity=0.054 Sum_probs=35.3
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCC---HHHHHHHCC
Q ss_conf 2115889998386658999999998498899998315776547---089998521
Q gi|254780936|r 110 SEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMA---SDQLRRQAD 161 (182)
Q Consensus 110 a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~---S~~L~~~ad 161 (182)
.+++|.+++.|....-.+.+..+-+.||.|.+- +|. ..+ +.+|.+.|.
T Consensus 65 ~~~vD~V~I~tp~~~H~~~a~~aL~~GKhVl~E---KP~-a~t~eea~eL~~~A~ 115 (181)
T 3e9m_A 65 DETIDIIYIPTYNQGHYSAAKLALSQGKPVLLE---KPF-TLNAAEAEELFAIAQ 115 (181)
T ss_dssp CTTCSEEEECCCGGGHHHHHHHHHHTTCCEEEC---SSC-CSSHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHCC---CCC-CCCCCCCCCCCCCCC
T ss_conf 777551113321011102113322433122203---454-322110122211222
No 185
>>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structural genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} (A:17-98)
Probab=32.02 E-value=34 Score=14.96 Aligned_cols=29 Identities=10% Similarity=0.155 Sum_probs=24.4
Q ss_pred EEEEECC-CHH-HHHHHHHHHHCCCEEEEEE
Q ss_conf 8999838-665-8999999998498899998
Q gi|254780936|r 115 HLVIFSG-DGC-FTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 115 ~~iLvSG-D~D-f~pli~~lr~~Gk~V~v~~ 143 (182)
-++.++| |.+ .-.++..|+++|..|+++.
T Consensus 50 l~l~l~G~~~~~~~~ai~~L~~~~v~vEvi~ 80 (82)
T 3ced_A 50 LVLHIPYISSVDFGKFEKELIERQVKXEVLR 80 (82)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 9999727998999999999998798799936
No 186
>>3etn_A Putative phosphosugar isomerase involved in capsule formation; YP_209877.1, structural genomics; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343} (A:)
Probab=31.86 E-value=34 Score=14.95 Aligned_cols=109 Identities=11% Similarity=0.055 Sum_probs=57.7
Q ss_pred HHHHHHHHHH--CCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 8999999851--79299999973068873146777579998897559569753458953788865435653299999999
Q gi|254780936|r 30 YRKLLKAFRS--RAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAF 107 (182)
Q Consensus 30 ~~~L~~~l~~--~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~ 107 (182)
+.+....+.. -....+.+.++ ....+.....+...|...|..+...+ |........
T Consensus 44 ~~~~~~~i~~~~l~~a~~I~i~G-----~G~S~~~A~~~~~~l~~~g~~~~~~~-----------------~~~~~~~~~ 101 (220)
T 3etn_A 44 YEKAVELIVEQIHRKKGKLVTSG-----XGKAGQIAXNIATTFCSTGIPSVFLH-----------------PSEAQHGDL 101 (220)
T ss_dssp HHHHHHHHHHHTTTTCCCEEEEC-----SHHHHHHHHHHHHHHHHTTCCEEECC-----------------TTGGGBTGG
T ss_pred HHHHHHHHHHHHHHCCCEEEEEE-----EECHHHHHHHHHHHHHHCCCEEEEHH-----------------HHHHHHHHH
T ss_conf 99999999999971698699998-----97148649999777641332134312-----------------678887665
Q ss_pred HHHCCCCEEEEECCCH---HHHHHHHHHH--HCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEH
Q ss_conf 9421158899983866---5899999999--849889999831577654708999852111518
Q gi|254780936|r 108 EQSEGLEHLVIFSGDG---CFTTLVAALQ--RKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 (182)
Q Consensus 108 ~~a~~~d~~iLvSGD~---Df~pli~~lr--~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi~l 166 (182)
...+.-|.+|++|--+ ..+.+++.+| +.|.+|+.++-. ....|.+.||..+.+
T Consensus 102 ~~~~~~dlvI~iS~sG~t~~~~~~~~~ak~~~~g~~vi~IT~~------~~s~l~~~ad~~i~~ 159 (220)
T 3etn_A 102 GILQENDLLLLISNSGKTREIVELTQLAHNLNPGLKFIVITGN------PDSPLASESDVCLST 159 (220)
T ss_dssp GGCCTTCEEEEECSSSCCHHHHHHHHHHHHHCTTCEEEEEESC------TTSHHHHHSSEEEEC
T ss_pred HCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEECC------CCHHHHHHHHHCCCC
T ss_conf 2157775599965897753136689998732457817987379------853677530100227
No 187
>>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek KEY, C-terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A (A:1-329)
Probab=31.68 E-value=35 Score=14.93 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=30.0
Q ss_pred HHHHHHHHHHCCCEEE-EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 5799988975595697-534589537888654356532999999999421158899983866589999999984988999
Q gi|254780936|r 63 LHPLLDWLHYNGFQVV-AKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTI 141 (182)
Q Consensus 63 ~~~~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v 141 (182)
....++.|+++|++.+ ..|+.+....+.....=..+|-. .-+..||-.+|+.+.++|.+|++
T Consensus 38 i~~~Ldyl~~LGv~aI~l~Pi~~~~~hGY~~~d~~~idp~-----------------~Gt~~~lk~LV~~aH~~Gi~Vil 100 (329)
T 2dh2_A 38 LKGRLDYLSSLKVKGLVLGPIHKNQKDDVAQTDLLQIDPN-----------------FGSKEDFDSLLQSAKKKSIRVIL 100 (329)
T ss_dssp HHTTHHHHHHTTCSEEEECCCEEECTTCSTTEEEEEECGG-----------------GCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCC-----------------CCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 9985379987499989989987489899887586303845-----------------69999999999999850673687
Q ss_pred EE
Q ss_conf 98
Q gi|254780936|r 142 VS 143 (182)
Q Consensus 142 ~~ 143 (182)
=.
T Consensus 101 D~ 102 (329)
T 2dh2_A 101 DL 102 (329)
T ss_dssp EC
T ss_pred EE
T ss_conf 57
No 188
>>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, PSI-2, protein structure initiative; HET: MSE; 2.08A {Ruegeria pomeroyi} (A:1-101)
Probab=31.67 E-value=35 Score=14.93 Aligned_cols=39 Identities=5% Similarity=-0.092 Sum_probs=32.9
Q ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 999942115889998386658999999998498899998
Q gi|254780936|r 105 DAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 105 D~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~ 143 (182)
++.+....+|.++..++-..-.++++.+++.|.+..+++
T Consensus 62 ~l~~~~~~~d~Vi~~~~~~~~~~v~~a~~~~gv~~vv~s 100 (101)
T 3ic5_A 62 GLAKALGGFDAVISAAPFFLTPIIAKAAKAAGAHYFDLT 100 (101)
T ss_dssp HHHHHTTTCSEEEECSCGGGHHHHHHHHHHTTCEEECCC
T ss_pred HHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEECC
T ss_conf 899996699999989773411999999999099979788
No 189
>>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum} (A:102-230)
Probab=31.65 E-value=35 Score=14.92 Aligned_cols=100 Identities=8% Similarity=-0.058 Sum_probs=63.1
Q ss_pred HHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH---
Q ss_conf 99999851792999999730688731467775799988975595697534589537888654356532999999999---
Q gi|254780936|r 32 KLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFE--- 108 (182)
Q Consensus 32 ~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~--- 108 (182)
.+.+.+.+.+.=..++. +. +......+.+.|.+++...|..+..... ..+.+..-..+++.
T Consensus 7 ~a~~~L~~~G~~~i~~i--~~--~~~~~~~R~~g~~~a~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~~ 70 (129)
T 3gyb_A 7 IATKHLIDLGHTHIAHL--RV--GSGAGLRRFESFEATXRAHGLEPLSNDY------------LGPAVEHAGYTETLALL 70 (129)
T ss_dssp HHHHHHHHTTCCSEEEE--CC--SSHHHHHHHHHHHHHHHHTTCCCEECCC------------CSCCCHHHHHHHHHHHH
T ss_pred HHCCHHHHCCCCCCCEE--CC--CCHHHHHHHHHHHHHHHHHHHHCCCCCC------------CCCCCHHHHHHHHHHHH
T ss_conf 10000011022322000--12--3202356677777899997430121123------------33343777655667776
Q ss_pred HHCCCCEEEEECCCHHHHHHHHHHHHCCCE----EEEEEEECC
Q ss_conf 421158899983866589999999984988----999983157
Q gi|254780936|r 109 QSEGLEHLVIFSGDGCFTTLVAALQRKVKK----VTIVSTVLS 147 (182)
Q Consensus 109 ~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~----V~v~~~~~~ 147 (182)
....--++|++++|.=...++..+++.|.+ |.|+++...
T Consensus 71 ~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~ip~di~ivgfd~~ 113 (129)
T 3gyb_A 71 KEHPEVTAIFSSNDITAIGALGAARELGLRVPEDLSIIGYDNT 113 (129)
T ss_dssp HHCTTCCEEEESSHHHHHHHHHHHHHHTCCTTTTCEEEEESCC
T ss_pred HHCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 5136863553125331135789988763300011024542582
No 190
>>3ff4_A Uncharacterized protein; structural genomics, PSI- 2, protein structure initiative, midwest center for structural genomics; 2.10A {Cytophaga hutchinsonii atcc 33406} (A:)
Probab=31.50 E-value=35 Score=14.91 Aligned_cols=81 Identities=12% Similarity=0.119 Sum_probs=50.9
Q ss_pred HHHHHHHHHCCCEEEEEEEEE-ECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 799988975595697534589-5378886543565329999999994211588999838665899999999849889999
Q gi|254780936|r 64 HPLLDWLHYNGFQVVAKVAKE-FTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 64 ~~~~~~l~~~g~~v~~~~~~~-~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
......|...||++....-+. ...+ ...-.+ ++....+|.+++++.-.--..+++.+.+.|.+..++
T Consensus 21 ~~v~~~l~~~g~~V~pVnp~~~~v~G---~~~y~~---------l~~~~~~D~v~i~~~~~~~~~~~~e~~~~gik~v~~ 88 (122)
T 3ff4_A 21 YLAAERLKSHGHEFIPVGRKKGEVLG---KTIINE---------RPVIEGVDTVTLYINPQNQLSEYNYILSLKPKRVIF 88 (122)
T ss_dssp HHHHHHHHHHTCCEEEESSSCSEETT---EECBCS---------CCCCTTCCEEEECSCHHHHGGGHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHCCCEEEEECCCCCEEEE---EEEEEC---------CCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999789989998565760000---589973---------434689879999968899899999998539999999
Q ss_pred EEECCCCCCCHHHHHHHCC
Q ss_conf 8315776547089998521
Q gi|254780936|r 143 STVLSDPSMASDQLRRQAD 161 (182)
Q Consensus 143 ~~~~~~~~~~S~~L~~~ad 161 (182)
- .+.-+.++.+.|.
T Consensus 89 ~-----~~~~~e~~~~~a~ 102 (122)
T 3ff4_A 89 N-----PGTENEELEEILS 102 (122)
T ss_dssp C-----TTCCCHHHHHHHH
T ss_pred E-----CCCCCHHHHHHHH
T ss_conf 3-----5987999999999
No 191
>>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus HB8} PDB: 2eq8_A* 2eq9_A* (A:1-139,A:298-337)
Probab=31.41 E-value=35 Score=14.90 Aligned_cols=12 Identities=25% Similarity=0.421 Sum_probs=5.3
Q ss_pred HHHHHCCCEEEE
Q ss_conf 889755956975
Q gi|254780936|r 68 DWLHYNGFQVVA 79 (182)
Q Consensus 68 ~~l~~~g~~v~~ 79 (182)
..+++.|++++.
T Consensus 101 ~~le~~gVdvi~ 112 (179)
T 2eq6_A 101 TLLKGNGVELLR 112 (179)
T ss_dssp HHHHHTTCEEEE
T ss_pred HHHHHCCCEEEE
T ss_conf 999758968999
No 192
>>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} (A:1-150)
Probab=31.32 E-value=35 Score=14.89 Aligned_cols=38 Identities=21% Similarity=0.069 Sum_probs=31.8
Q ss_pred HHHHH--HCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 99994--211588999838665899999999849889999
Q gi|254780936|r 105 DAFEQ--SEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 105 D~~~~--a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
|..+. .+.+|.+++.|.+..-.+.+..+-+.||.|.+-
T Consensus 84 d~~~~~~~~~iD~V~i~t~~~~h~~~~~~Al~~GkhV~~e 123 (150)
T 1r0k_A 84 DALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVALA 123 (150)
T ss_dssp HHHHHHHTSCCSEEEECCCSGGGHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 7776521466778999457575699999999759918995
No 193
>>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic parasitic protozoan, structural genomics, decode, UW, SBRI; 2.49A {Entamoeba histolytica} (A:1-140)
Probab=31.30 E-value=35 Score=14.89 Aligned_cols=34 Identities=12% Similarity=0.194 Sum_probs=28.7
Q ss_pred HHCCCCEEEEECCCHH----HHHHHHHHHHCCCEEEEE
Q ss_conf 4211588999838665----899999999849889999
Q gi|254780936|r 109 QSEGLEHLVIFSGDGC----FTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 109 ~a~~~d~~iLvSGD~D----f~pli~~lr~~Gk~V~v~ 142 (182)
.+..-++++|+|||-= +..+++.+++.|.+|.++
T Consensus 92 ~~~~~~v~~l~~GDP~~~~~~~~l~~~~~~~~i~v~vi 129 (140)
T 3i4t_A 92 PAKTKNVALLVVGDVYGATTHSDIFVRCQKMGIEVKVI 129 (140)
T ss_dssp HHTTSEEEEEESBCHHHHCTTHHHHHHHHHHTCCEEEE
T ss_pred HHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEC
T ss_conf 97499889997688888871999999999769927977
No 194
>>3e61_A Putative transcriptional repressor of ribose operon; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp} (A:1-100,A:232-251)
Probab=30.87 E-value=36 Score=14.84 Aligned_cols=68 Identities=12% Similarity=0.056 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--CCCCEEEEECCCHHHHHHHHHHHHCCCE
Q ss_conf 77579998897559569753458953788865435653299999999942--1158899983866589999999984988
Q gi|254780936|r 61 SPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS--EGLEHLVIFSGDGCFTTLVAALQRKVKK 138 (182)
Q Consensus 61 ~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a--~~~d~~iLvSGD~Df~pli~~lr~~Gk~ 138 (182)
.-.....+++.+.|+.+.... .+-|..-....++.. .++|.+|+++.+.| |.++.+++.|..
T Consensus 25 ~i~~gi~~aa~~~gy~v~i~~--------------~~~d~~~~~~~i~~l~~~~vDGIIi~~~~~~--~~~~~~~~~~iP 88 (120)
T 3e61_A 25 LIARGVEDVALAHGYQVLIGN--------------SDNDIKKAQGYLATFVSHNCTGMISTAFNEN--IIENTLTDHHIP 88 (120)
T ss_dssp HHHHHHHHHHHHTTCCEEEEE--------------CTTCHHHHHHHHHHHHHTTCSEEEECGGGHH--HHHHHHHHC-CC
T ss_pred HHHHHHHHHHHHCCCEEEEEE--------------CCCCHHHHHHHHHHHHHCCCCCEEECCCCHH--HHHHHHHHCCCC
T ss_conf 999999999998699999996--------------8999899999999998446642253143115--578776403753
Q ss_pred EEEEEE
Q ss_conf 999983
Q gi|254780936|r 139 VTIVST 144 (182)
Q Consensus 139 V~v~~~ 144 (182)
|+.+..
T Consensus 89 vV~id~ 94 (120)
T 3e61_A 89 FVFIDR 94 (120)
T ss_dssp EEEGGG
T ss_pred EEEEEE
T ss_conf 035530
No 195
>>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A* (A:117-211)
Probab=30.80 E-value=36 Score=14.84 Aligned_cols=74 Identities=14% Similarity=0.094 Sum_probs=39.9
Q ss_pred HHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH----HCCCCEEEEECCCHHHHHHHHHHH-HCCC
Q ss_conf 57999889755956975345895378886543565329999999994----211588999838665899999999-8498
Q gi|254780936|r 63 LHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ----SEGLEHLVIFSGDGCFTTLVAALQ-RKVK 137 (182)
Q Consensus 63 ~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~----a~~~d~~iLvSGD~Df~pli~~lr-~~Gk 137 (182)
.......+...||+|.....-...+ ...=..++-.-..++... .+..|.++|.+..=--.+++..|. +.|+
T Consensus 15 ~~~~~~~~~~~G~eV~~~~~l~~~~----~~~ia~i~~~~i~~~~~~~~~d~p~adai~isCTnlrt~~~i~~lE~~lG~ 90 (95)
T 3ixl_A 15 NERLAAFLAEESLVPTGXRSLGITG----VEAMARVDTATLVDLCVRAFEAAPDSDGILLSSGGLLTLDAIPEVERRLGV 90 (95)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCCCC----HHHHHTCCHHHHHHHHHHHHHTSTTCSEEEEECTTSCCTTHHHHHHHHHSS
T ss_pred HHHHHHHHHHCCCEECCEEECCCCC----CHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 7999999998797330311027885----265403799999999999974189987899847885378899999999898
Q ss_pred EEE
Q ss_conf 899
Q gi|254780936|r 138 KVT 140 (182)
Q Consensus 138 ~V~ 140 (182)
-|+
T Consensus 91 PVi 93 (95)
T 3ixl_A 91 PVV 93 (95)
T ss_dssp CEE
T ss_pred CEE
T ss_conf 898
No 196
>>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} (A:1-125,A:255-302)
Probab=30.70 E-value=36 Score=14.83 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=29.3
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 211588999838665899999999849889999
Q gi|254780936|r 110 SEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 110 a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
.+.+|.+++.|.+..-.+.+..+-+.||.|.+-
T Consensus 62 ~~~iD~VvIatp~~~h~~~a~~Al~~GkhVl~E 94 (173)
T 3ezy_A 62 DPNVDAVLVCSSTNTHSELVIACAKAKKHVFCE 94 (173)
T ss_dssp CTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 999899998242100199999999717958996
No 197
>>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, structural genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367} (A:1-125)
Probab=30.51 E-value=36 Score=14.81 Aligned_cols=44 Identities=11% Similarity=-0.038 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCH-----HHHHHHHHHHHCCCEEEEE
Q ss_conf 2999999999421158899983866-----5899999999849889999
Q gi|254780936|r 99 DVELAVDAFEQSEGLEHLVIFSGDG-----CFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 99 Dv~laiD~~~~a~~~d~~iLvSGD~-----Df~pli~~lr~~Gk~V~v~ 142 (182)
...+.-.+...+..-+++++++||. =+..+++++++.|..|.++
T Consensus 75 ~~~~~~~i~~~~~g~~vv~~~~gg~P~~y~~~~~l~~~~~~~g~~veiI 123 (125)
T 3kwp_A 75 QERIPQLIAKLKQGXQIAQVSDAGXPSISDPGHELVNACIDAHIPVVPL 123 (125)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSBCTTSSHHHHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEC
T ss_conf 6579999999985997899976888510366999999851875589986
No 198
>>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} (A:)
Probab=30.45 E-value=36 Score=14.80 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=23.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 8999838665899999999849889999
Q gi|254780936|r 115 HLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 115 ~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
..|.++.|.|+..+++.++..|.++.-+
T Consensus 68 D~V~l~sd~DL~~A~~~~~~~~~~~l~i 95 (98)
T 1q1o_A 68 DFVVLGSDEDWNVAKEMLAENNEKFLNI 95 (98)
T ss_dssp CEEEECSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEE
T ss_conf 9999943217999999987505533999
No 199
>>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genomics; 1.85A {Pyrococcus horikoshii OT3} (A:1-69,A:202-263)
Probab=30.41 E-value=31 Score=15.22 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=25.0
Q ss_pred EEECCC---HHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHH---CCCC-EEHHHHHHHHC
Q ss_conf 998386---6589999999984988999983157765470899985---2111-51899787622
Q gi|254780936|r 117 VIFSGD---GCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQ---ADYF-MDLAYLKNEIA 174 (182)
Q Consensus 117 iLvSGD---~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~---ad~f-i~l~~l~~~i~ 174 (182)
+++=|| .|..+ +++.|.+.+.+... .....++... +|.. -++.++.+.+.
T Consensus 73 ~~~VGD~~~~Di~~----A~~aG~~ti~v~~g----~~~~~~~~~~~~~p~~~i~~l~el~~~l~ 129 (131)
T 1zjj_A 73 LWMVGDRLDTDIAF----AKKFGMKAIMVLTG----VSSLEDIKKSEYKPDLVLPSVYELIDYLK 129 (131)
T ss_dssp EEEEESCTTTHHHH----HHHTTCEEEEESSS----SCCHHHHTTCSSCCSEEESSGGGGGGGGC
T ss_pred EEEECCCHHHHHHH----HHHCCCCEEEECCC----CCCHHHHHHCCCCCCEEECCHHHHHHHHH
T ss_conf 79976881778999----99879969998889----99867885058999889899999999997
No 200
>>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii DSM2661} (A:1-128)
Probab=30.36 E-value=36 Score=14.79 Aligned_cols=39 Identities=13% Similarity=-0.002 Sum_probs=32.4
Q ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 999942115889998386658999999998498899998
Q gi|254780936|r 105 DAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 105 D~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~ 143 (182)
+-+.....+|.+++.|......+.+..+-++|+.|.+-.
T Consensus 63 ~~~~~~~~~d~V~i~~~~~~h~~~~~~~~~~G~~v~vek 101 (128)
T 2yv1_A 63 KEAVKETDANASVIFVPAPFAKDAVFEAIDAGIELIVVI 101 (128)
T ss_dssp HHHHHHHCCCEEEECCCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred HHHCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEC
T ss_conf 662055566369996035546057999986588778741
No 201
>>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} (A:183-413)
Probab=30.10 E-value=37 Score=14.76 Aligned_cols=143 Identities=15% Similarity=0.089 Sum_probs=56.2
Q ss_pred CCCCEEEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEEEEEEE-CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 788718999807899999985087679899999985179299999973-0688731467775799988975595697534
Q gi|254780936|r 3 DPREKIALFIDGANLYASSKALGFDIDYRKLLKAFRSRAIVIRAYYYT-TVVGDPEQQFSPLHPLLDWLHYNGFQVVAKV 81 (182)
Q Consensus 3 ~~~~rvaIfID~~Nl~~~~~~~~~~~d~~~L~~~l~~~~~l~~~~~y~-~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~ 81 (182)
.+.+||.|.+=|+ .|=..++..+.+.+.-+.+..+. +... ..+.......+.+.+.-..+.+....
T Consensus 3 ~~~~kvvv~~SGG------------~DS~~ll~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~l~~~~~~~~~~~ 69 (231)
T 2c5s_A 3 GVGGKVMVLLSGG------------IDSPVAAYLTMKRGVSVEAVHFHSPPFT-SERAKQKVIDLAQELTKYCKRVTLHL 69 (231)
T ss_dssp TTTEEEEEECCSS------------SHHHHHHHHHHHBTEEEEEEEEECTTTS-CHHHHHHHHHHHHHHGGGSSCEEEEE
T ss_pred CCCCCEEEEECCC------------CHHHHHHHHHHHCCCCEEEEEEECCCCC-CHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 6688289993578------------6399999999974997799999789989-87899999999998399715565577
Q ss_pred EEEECCC-------CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCH--HH---HHHHHHHHHCCCEEEEEEEECCCC
Q ss_conf 5895378-------88654356532999999999421158899983866--58---999999998498899998315776
Q gi|254780936|r 82 AKEFTEN-------CGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDG--CF---TTLVAALQRKVKKVTIVSTVLSDP 149 (182)
Q Consensus 82 ~~~~~~~-------~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~--Df---~pli~~lr~~Gk~V~v~~~~~~~~ 149 (182)
...... .............+..-+...+.....-+|++|+. |+ ...-..--..+..+.++. +..
T Consensus 70 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~---PL~ 145 (231)
T 2c5s_A 70 -VPFTEVQKTINKEIPSSYSMTVMRRMMMRITERIAEERNALAITTGESLGQVASQTLDSMHTINEVTNYPVIR---PLI 145 (231)
T ss_dssp -EECHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSSSTTSCCHHHHHHHGGGCCSCEEC---TTT
T ss_pred -EEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCHHCCCHHHH---HHC
T ss_conf -4078898887521677773167899999999999997399899968857742125799874142001422567---761
Q ss_pred CCCHHHHHHHCCC
Q ss_conf 5470899985211
Q gi|254780936|r 150 SMASDQLRRQADY 162 (182)
Q Consensus 150 ~~~S~~L~~~ad~ 162 (182)
..+-.++.+.|..
T Consensus 146 ~~~k~ei~~~~~~ 158 (231)
T 2c5s_A 146 TMDKLEIIKIAEE 158 (231)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
T ss_conf 9999999999998
No 202
>>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} (A:1-126)
Probab=28.80 E-value=39 Score=14.62 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=32.1
Q ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 99994211588999838665899999999849889999
Q gi|254780936|r 105 DAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 105 D~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
+.+.....+|.+++.|++.--.+.+..+-+.|+.|.+-
T Consensus 58 ~~l~~~~~~d~v~i~~~~~~h~~~~~~~l~~g~~vl~e 95 (126)
T 3fhl_A 58 KELTEDPEIDLIVVNTPDNTHYEYAGMALEAGKNVVVE 95 (126)
T ss_dssp HHHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEE
T ss_pred HHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEECC
T ss_conf 99965999988999189457789999999859985115
No 203
>>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} (A:1-178)
Probab=28.38 E-value=39 Score=14.58 Aligned_cols=82 Identities=11% Similarity=0.155 Sum_probs=57.3
Q ss_pred HHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH-CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 79998897559569753458953788865435653299999999942-11588999838665899999999849889999
Q gi|254780936|r 64 HPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS-EGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 64 ~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a-~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
..+...|...||+|.... +..=++.++... +.++.+.+-=.+-|-..++++++..+..+-++
T Consensus 23 ~~l~~~L~~~g~~V~~a~-----------------s~~~al~~l~~~~~~~~lidld~~~~dG~~~l~~lr~~~~~~pvI 85 (178)
T 1r8j_A 23 QDCQRALSADRYQLQVCE-----------------SGEMLLEYAQTHRDQIDCLILVAANPSFRAVVQQLCFEGVVVPAI 85 (178)
T ss_dssp HHHHHHTCSTTEEEEEEC-----------------SHHHHHHHHHHSTTSCSEEEEETTSTTHHHHHHHHHHTTCCCCEE
T ss_pred HHHHHHCCCCCEEEEECC-----------------CHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEE
T ss_conf 999986778855898548-----------------677999999847357767999705875179999999658535679
Q ss_pred EEECCCCCCCHHHHHHHCCCCE
Q ss_conf 8315776547089998521115
Q gi|254780936|r 143 STVLSDPSMASDQLRRQADYFM 164 (182)
Q Consensus 143 ~~~~~~~~~~S~~L~~~ad~fi 164 (182)
.. +....+.+.++..|+.|.
T Consensus 86 ~l--t~~~~~~~a~~~ga~dy~ 105 (178)
T 1r8j_A 86 VV--GDRDSEDPDEPAKEQLYH 105 (178)
T ss_dssp EE--SCCC------CCSSCSSB
T ss_pred EE--ECCCCCCCCCCCCCEEEE
T ss_conf 97--158788887888624444
No 204
>>2bon_A Lipid kinase; DAG kinase, ATP-binding, transferase; 1.9A {Escherichia coli} (A:1-143,A:311-332)
Probab=28.28 E-value=40 Score=14.57 Aligned_cols=96 Identities=15% Similarity=0.117 Sum_probs=53.7
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--CCCCEEEEECC
Q ss_conf 9999973068873146777579998897559569753458953788865435653299999999942--11588999838
Q gi|254780936|r 44 IRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS--EGLEHLVIFSG 121 (182)
Q Consensus 44 ~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a--~~~d~~iLvSG 121 (182)
.+.....+........ .......|...|+.+..... .+.-+ +.+....+ ..+|.+|++.|
T Consensus 30 ~~~~vivNp~SG~~~~---~~~i~~~l~~~g~~~~v~~t------------~~~~~---~~~~~~~~~~~~~d~Ivi~GG 91 (165)
T 2bon_A 30 PASLLILNGKSTDNLP---LREAIMLLREEGMTIHVRVT------------WEKGD---AARYVEEARKFGVATVIAGGG 91 (165)
T ss_dssp CCEEEEECSSSTTCHH---HHHHHHHHHTTTCCEEEEEC------------CSTTH---HHHHHHHHHHHTCSEEEEEES
T ss_pred CCEEEEECCCCCCCHH---HHHHHHHHHHCCCEEEEEEC------------CCCHH---HHHHHHHHHHCCCCEEEEECC
T ss_conf 9679998787678854---99999999977986999964------------88057---999999998779999999988
Q ss_pred CHHHHHHHHHHHHCCC--EEEEEEEECCCCCCCHHHHH
Q ss_conf 6658999999998498--89999831577654708999
Q gi|254780936|r 122 DGCFTTLVAALQRKVK--KVTIVSTVLSDPSMASDQLR 157 (182)
Q Consensus 122 D~Df~pli~~lr~~Gk--~V~v~~~~~~~~~~~S~~L~ 157 (182)
||=+-.++..+..... .+.+..+..|-.+..|+.|-
T Consensus 92 DGTi~~vl~~l~~~~~~~~~~i~iiP~GT~N~fA~~Lg 129 (165)
T 2bon_A 92 DGTINEVSTALIQCEGDDIPALGILPLGTANDFATSVG 129 (165)
T ss_dssp HHHHHHHHHHHHHCCSSCCCEEEEEECSSSCHHHHHTT
T ss_pred CCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHCC
T ss_conf 68899999998741656797389974786141214359
No 205
>>1gnl_A HCP, hybrid cluster protein; anaerobic desulfovibrio desulfuricans, iron anomalous; HET: FSO; 1.25A {Desulfovibrio desulfuricans} (A:231-357)
Probab=28.19 E-value=22 Score=16.22 Aligned_cols=17 Identities=12% Similarity=0.155 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHHHHCC
Q ss_conf 38665899999999849
Q gi|254780936|r 120 SGDGCFTTLVAALQRKV 136 (182)
Q Consensus 120 SGD~Df~pli~~lr~~G 136 (182)
.|+.||.|+|+++++..
T Consensus 109 ~g~kDFs~vI~~A~~~~ 125 (127)
T 1gnl_A 109 GEHKDFSAIIAHAKTCP 125 (127)
T ss_dssp SCCCCCHHHHHHHHTSC
T ss_pred CCCCCCHHHHHHHHCCC
T ss_conf 55555199998876189
No 206
>>3e61_A Putative transcriptional repressor of ribose operon; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp} (A:101-231)
Probab=27.48 E-value=41 Score=14.48 Aligned_cols=99 Identities=12% Similarity=-0.091 Sum_probs=61.1
Q ss_pred HHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 99998517929999997306887314677757999889755956975345895378886543565329999999994211
Q gi|254780936|r 33 LLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEG 112 (182)
Q Consensus 33 L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~ 112 (182)
+.+.+.+.+.-.. .+.+.+........+...|.+++...|..+...... .. ........+. ...
T Consensus 13 a~~~L~~~G~~~i--~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~-----------~~--~~~~~~~~~~-~~~ 76 (131)
T 3e61_A 13 QAEVVRKGKGKNV--LIVHENLLIDAFHQRVQGIKYILDQQRIDYKMLEAT-----------LL--DNDKKFIDLI-KEL 76 (131)
T ss_dssp HHHHHHHTTCCSE--EEEESCTTSHHHHHHHHHHHHHHHC---CEEEEEGG-----------GG--GSHHHHHHHH-HHH
T ss_pred HHHHHHHCCCCEE--EEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEC-----------CC--CHHHHHHHHH-HCC
T ss_conf 9999983776048--996166766512333067999999859982144302-----------23--2257899997-446
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE----EEEEEEECC
Q ss_conf 58899983866589999999984988----999983157
Q gi|254780936|r 113 LEHLVIFSGDGCFTTLVAALQRKVKK----VTIVSTVLS 147 (182)
Q Consensus 113 ~d~~iLvSGD~Df~pli~~lr~~Gk~----V~v~~~~~~ 147 (182)
--++|++++|.-..-+++.+++.|.+ +.++++...
T Consensus 77 ~~~ai~~~~d~~a~~~~~~l~~~g~~ip~di~i~~~d~~ 115 (131)
T 3e61_A 77 SIDSIICSNDLLAINVLGIVQRYHFKVPAEIQIIGYDNI 115 (131)
T ss_dssp TCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECSBCC
T ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf 965674023454525667664024467750355541581
No 207
>>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* (A:1-138,A:281-331)
Probab=27.38 E-value=41 Score=14.47 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=16.2
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 115889998386658999999998498899998
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~ 143 (182)
.+||.+||=+|=+-+.-++. |.+.|++|.++-
T Consensus 3 ~~yDViIIGaGpAGl~AA~~-la~~G~kV~iiE 34 (189)
T 2r9z_A 3 QHFDLIAIGGGSGGLAVAEK-AAAFGKRVALIE 34 (189)
T ss_dssp CCEEEEEECCSHHHHHHHHH-HHHTTCCEEEEE
T ss_pred CCCCEEEECCCHHHHHHHHH-HHHCCCCEEEEE
T ss_conf 60779999788999999999-996899199994
No 208
>>2gz1_A Aspartate beta-semialdehyde dehydrogenase; aspartate pathway, oxidoreductase; HET: NAP; 1.80A {Streptococcus pneumoniae} (A:1-126,A:328-366)
Probab=27.36 E-value=31 Score=15.21 Aligned_cols=33 Identities=12% Similarity=0.076 Sum_probs=26.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 115889998386658999999998498899998
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~ 143 (182)
..+|.+++.+|.+--..++..+.+.|++|+-.+
T Consensus 63 ~~~DvVf~a~~~~~s~~~~~~l~~~G~~vIDlS 95 (165)
T 2gz1_A 63 EGVDIALFSAGSSTSAKYAPYAVKAGVVVVDNT 95 (165)
T ss_dssp TTCSEEEECSCHHHHHHHHHHHHHTTCEEEECS
T ss_pred HCCCEEEECCCCCHHHHHHHHHCCCCCEEEEEC
T ss_conf 028989987997313334335404682898766
No 209
>>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} (B:1-76)
Probab=27.32 E-value=41 Score=14.46 Aligned_cols=32 Identities=13% Similarity=0.137 Sum_probs=28.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 88999838665899999999849889999831
Q gi|254780936|r 114 EHLVIFSGDGCFTTLVAALQRKVKKVTIVSTV 145 (182)
Q Consensus 114 d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~ 145 (182)
..-+.|.+|-|--.+++.|++.|.++.+....
T Consensus 43 ~~~~~V~~~~~~~~i~~~i~~~G~~~~~~~~~ 74 (76)
T 1jk9_B 43 QQIMSVESSVAPSTIINTLRNCGKDAIIRGAG 74 (76)
T ss_dssp TTEEEEEESSCHHHHHHHHHTTTCCCEEEEES
T ss_pred CCEEEEEECCCHHHHHHHHHHHCCCEEEECCC
T ss_conf 99999961499999999999869978995478
No 210
>>1vli_A Spore coat polysaccharide biosynthesis protein SPSE; 2636322, structural genomics, JCSG, protein structure initiative, BSU37870, PSI; 2.38A {Bacillus subtilis} (A:1-300)
Probab=27.31 E-value=41 Score=14.46 Aligned_cols=75 Identities=13% Similarity=0.117 Sum_probs=50.6
Q ss_pred HHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH-C-CCCEEEEECCCHHHHHHHHHHHHCCCEEE
Q ss_conf 579998897559569753458953788865435653299999999942-1-15889998386658999999998498899
Q gi|254780936|r 63 LHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS-E-GLEHLVIFSGDGCFTTLVAALQRKVKKVT 140 (182)
Q Consensus 63 ~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a-~-~~d~~iLvSGD~Df~pli~~lr~~Gk~V~ 140 (182)
+..+.+..++.|..+...|+ | .+.++.+ + .++.+=|-|+|-.-.|+++++-+.||.|+
T Consensus 103 ~~~L~~~~~~~Gi~~~st~f----------------d----~~~vd~l~~~~v~~~KI~S~~~~n~~LL~~~A~tgkPvi 162 (300)
T 1vli_A 103 ILPLLDYCREKQVIFLSTVC----------------D----EGSADLLQSTSPSAFKIASYEINHLPLLKYVARLNRPXI 162 (300)
T ss_dssp HHHHHHHHHHTTCEEECBCC----------------S----HHHHHHHHTTCCSCEEECGGGTTCHHHHHHHHTTCSCEE
T ss_pred HHHHHHHHHCCCCEEEECCC----------------C----HHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCE
T ss_conf 55554443213430110122----------------0----244431012122111203323344699999986089610
Q ss_pred EEEEECCCCCCCHHHHHHHCCC
Q ss_conf 9983157765470899985211
Q gi|254780936|r 141 IVSTVLSDPSMASDQLRRQADY 162 (182)
Q Consensus 141 v~~~~~~~~~~~S~~L~~~ad~ 162 (182)
+-+ | ..+=.++.++++.
T Consensus 163 lst---G--~~t~~ei~~Av~~ 179 (300)
T 1vli_A 163 FST---A--GAEISDVHEAWRT 179 (300)
T ss_dssp EEC---T--TCCHHHHHHHHHH
T ss_pred EEC---C--HHHHHHHHHHHHH
T ss_conf 211---0--3345667889988
No 211
>>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA; 1.70A {Aquifex aeolicus VF5} PDB: 2qq1_A 2f7w_A 2f7y_A 2fuw_A (A:)
Probab=27.28 E-value=41 Score=14.46 Aligned_cols=20 Identities=10% Similarity=0.067 Sum_probs=16.7
Q ss_pred CCCCCCEEEEEEEHHHHHHH
Q ss_conf 98788718999807899999
Q gi|254780936|r 1 MFDPREKIALFIDGANLYAS 20 (182)
Q Consensus 1 m~~~~~rvaIfID~~Nl~~~ 20 (182)
|..+++|++|++=|+-+..+
T Consensus 1 m~~~~~rv~vi~~GdEi~~G 20 (178)
T 2pbq_A 1 MSEKKAVIGVVTISDRASKG 20 (178)
T ss_dssp ----CCEEEEEEECHHHHHT
T ss_pred CCCCCCEEEEEEECCCCCCC
T ss_conf 99776369999947664368
No 212
>>3bic_A Methylmalonyl-COA mutase, mitochondrial precursor; organic aciduria, methylmalonyl COA mutase deficiency, metabolic disease, structural genomics; 2.60A {Homo sapiens} (A:584-762)
Probab=27.14 E-value=41 Score=14.44 Aligned_cols=86 Identities=8% Similarity=0.004 Sum_probs=47.5
Q ss_pred HHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--CCCCEEEEECCCHH----HHHHHHHHHHCC
Q ss_conf 579998897559569753458953788865435653299999999942--11588999838665----899999999849
Q gi|254780936|r 63 LHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS--EGLEHLVIFSGDGC----FTTLVAALQRKV 136 (182)
Q Consensus 63 ~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a--~~~d~~iLvSGD~D----f~pli~~lr~~G 136 (182)
..-+...|+..||+++.-. .++.. -++++.+ .+.|.++|.+...+ +..+++.+|+.|
T Consensus 38 ~~~~~~~l~~~G~~v~~lg--------------~~~~~---~~~~~~~~~~~~d~V~ls~~~~~~~~~~~~~~~~lr~~g 100 (179)
T 3bic_A 38 AKVIATGFADLGFDVDIGP--------------LFQTP---REVAQQAVDADVHAVGVSTLAAGHKTLVPELIKELNSLG 100 (179)
T ss_dssp HHHHHHHHHHTTCEEEECC--------------TTBCH---HHHHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCEEEECCC--------------CCCCH---HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 9999999985780075088--------------77899---999999997598999993687347989999999999679
Q ss_pred CE-EEEEEEECCCCCCCHHHHHHHCCCCEE
Q ss_conf 88-999983157765470899985211151
Q gi|254780936|r 137 KK-VTIVSTVLSDPSMASDQLRRQADYFMD 165 (182)
Q Consensus 137 k~-V~v~~~~~~~~~~~S~~L~~~ad~fi~ 165 (182)
.+ +.|+....+........+.--+|.|+.
T Consensus 101 ~~~~~vivgG~~~~~~~~~~~~~Gad~~~~ 130 (179)
T 3bic_A 101 RPDILVMCGGVIPPQDYEFLFEVGVSNVFG 130 (179)
T ss_dssp CTTSEEEEEESCCGGGHHHHHHHTCCEEEC
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEEC
T ss_conf 988679980768878899999779767819
No 213
>>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* (A:1-129,A:316-336)
Probab=27.09 E-value=41 Score=14.43 Aligned_cols=34 Identities=6% Similarity=-0.076 Sum_probs=28.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 1158899983866589999999984988999983
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVST 144 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~ 144 (182)
..+|.+++.++++--.+.+..+.+.|++|+-.+.
T Consensus 64 ~~~DvVf~a~~~~~s~~~~~~~~~~G~~vIDlS~ 97 (150)
T 2r00_A 64 SQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTS 97 (150)
T ss_dssp GGCSEEEECSCHHHHHHHHHHHHHTTCEEEECSS
T ss_pred HCCCEEEECCCCCHHHHHHHHHHHCCCEEECCCH
T ss_conf 0074664268851215553888864966861652
No 214
>>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} (A:1-98,A:233-276)
Probab=26.52 E-value=42 Score=14.37 Aligned_cols=71 Identities=10% Similarity=-0.069 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH--HHCCCCEEEEECCCHHHHHHHHHHHHCCCE
Q ss_conf 775799988975595697534589537888654356532999999999--421158899983866589999999984988
Q gi|254780936|r 61 SPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFE--QSEGLEHLVIFSGDGCFTTLVAALQRKVKK 138 (182)
Q Consensus 61 ~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~--~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~ 138 (182)
.-...+.+.+.+.|+++....... |.......++ ...++|-+||++.+.+ -+.++.+++.|..
T Consensus 16 ~i~~gi~~~a~~~G~~l~i~~~~~--------------~~~~~~~~i~~ll~~~vDGIIl~~~~~~-~~~~~~l~~~~iP 80 (142)
T 2h0a_A 16 RLVEGIEGVLLEQRYDLALFPILS--------------LARLKRYLENTTLAYLTDGLILASYDLT-ERFEEGRLPTERP 80 (142)
T ss_dssp HHHHHHHHHHGGGTCEEEECCCCS--------------CCCCC---------CCCSEEEEESCCCC-------CCSCSSC
T ss_pred HHHHHHHHHHHHCCCEEEEEECCC--------------CHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHHHHCCC
T ss_conf 999999999998699899997899--------------8699999999998558987898413300-6789987651465
Q ss_pred EEEEEEEC
Q ss_conf 99998315
Q gi|254780936|r 139 VTIVSTVL 146 (182)
Q Consensus 139 V~v~~~~~ 146 (182)
|+++....
T Consensus 81 vV~id~~~ 88 (142)
T 2h0a_A 81 VVLVDAQN 88 (142)
T ss_dssp EEEESSCC
T ss_pred CCCCCCCC
T ss_conf 21222357
No 215
>>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, structural genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis V583} (A:1-74,A:185-264)
Probab=26.45 E-value=43 Score=14.36 Aligned_cols=71 Identities=13% Similarity=0.088 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHC-CCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCE-EHHHHHHHHC
Q ss_conf 2999999999421-15889998386--658999999998498899998315776547089998521115-1899787622
Q gi|254780936|r 99 DVELAVDAFEQSE-GLEHLVIFSGD--GCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFM-DLAYLKNEIA 174 (182)
Q Consensus 99 Dv~laiD~~~~a~-~~d~~iLvSGD--~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi-~l~~l~~~i~ 174 (182)
+..+-..+++... .-...+.|.+| .|..+ +++.|.+++.+........ .-..+...+|..+ ++.++...+.
T Consensus 75 ~p~~~~~~~~~~~~~~~~~~~vgdd~~~Di~~----A~~~G~~ti~v~~g~~~~~-~~~~~~~~~d~~i~~l~el~~~l~ 149 (154)
T 1yv9_A 75 KAIIMERAIAHLGVEKEQVIMVGDNYETDIQS----GIQNGIDSLLVTSGFTPKS-AVPTLPTPPTYVVDSLDEWTFEGH 149 (154)
T ss_dssp SHHHHHHHHHHHCSCGGGEEEEESCTTTHHHH----HHHHTCEEEEETTSSSCSS-STTTCSSCCSEEESSGGGCCTTC-
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCHHHHHHH----HHHCCCCEEEECCCCCCHH-HHHHCCCCCCEEECCHHHHHHCCC
T ss_conf 16778788998489845499989962789999----9987998999899999978-897469999799899999854054
No 216
>>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genomics, protein structure initiative, PSI; HET: NAD; 1.95A {Listeria innocua} (A:1-125)
Probab=26.44 E-value=43 Score=14.36 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=32.1
Q ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 99994211588999838665899999999849889999
Q gi|254780936|r 105 DAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 105 D~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
+.+-....+|.+++.|.+....+.+..+-+.||.|.+-
T Consensus 58 ~~~~~~~~~d~v~i~~~~~~h~~~~~~al~~gk~v~~e 95 (125)
T 3e18_A 58 EAVLADEKVDAVLIATPNDSHKELAISALEAGKHVVCE 95 (125)
T ss_dssp HHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEE
T ss_pred HHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 99955989888999466112331035554321110025
No 217
>>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} (A:1-145,A:408-458)
Probab=26.35 E-value=43 Score=14.35 Aligned_cols=61 Identities=16% Similarity=0.022 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCC
Q ss_conf 53299999999942115889998386658999999998498899998315776547089998521
Q gi|254780936|r 97 SMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQAD 161 (182)
Q Consensus 97 ~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad 161 (182)
..|+.-.-+.-+...+.|.+|..+.+.--.+.++.+-+.|+.|...+- -....++|.+.|-
T Consensus 73 ~~d~~~~~~l~~~~~~~DiVI~~~P~~~h~~va~~~i~~gk~vv~~s~----~~~~~~~L~~~ak 133 (196)
T 2axq_A 73 SLDVTDDSALDKVLADNDVVISLIPYTFHPNVVKSAIRTKTDVVTSSY----ISPALRELEPEIV 133 (196)
T ss_dssp ECCTTCHHHHHHHHHTSSEEEECSCGGGHHHHHHHHHHHTCEEEECSC----CCHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHCCCCEEEECCCHHHCHHHHHHHHHCCCCEECCHH----CCCHHHHHHHHHH
T ss_conf 984799899999861899999998813369999999974996750400----0101333202330
No 218
>>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} (A:1-143,A:294-344)
Probab=26.27 E-value=43 Score=14.34 Aligned_cols=11 Identities=9% Similarity=-0.010 Sum_probs=5.1
Q ss_pred HHHCCCEEEEE
Q ss_conf 97559569753
Q gi|254780936|r 70 LHYNGFQVVAK 80 (182)
Q Consensus 70 l~~~g~~v~~~ 80 (182)
+...|+++...
T Consensus 103 ~~~~gV~~~~G 113 (194)
T 2qae_A 103 FKKNKVTYYKG 113 (194)
T ss_dssp HHHHTCEEEEE
T ss_pred HHCCCEEEEEE
T ss_conf 75088399973
No 219
>>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* (A:1-142)
Probab=25.91 E-value=44 Score=14.30 Aligned_cols=62 Identities=15% Similarity=0.041 Sum_probs=44.9
Q ss_pred HHHHHH-CCCCEEEEECC---CHHHHHHHHHHHHCCCEEEEEEEECCCCCC---CHHHHHHHCCCCEEH
Q ss_conf 999942-11588999838---665899999999849889999831577654---708999852111518
Q gi|254780936|r 105 DAFEQS-EGLEHLVIFSG---DGCFTTLVAALQRKVKKVTIVSTVLSDPSM---ASDQLRRQADYFMDL 166 (182)
Q Consensus 105 D~~~~a-~~~d~~iLvSG---D~Df~pli~~lr~~Gk~V~v~~~~~~~~~~---~S~~L~~~ad~fi~l 166 (182)
|+.+.. .++|.+++=-+ +.|.+..+..+...|+.|++.+-...+++. .+..|...||....|
T Consensus 68 ~i~~~~~~~~dvI~IDEaQFf~~~~v~~l~~lad~g~~Vi~aGL~~df~~~~F~~~~~Ll~~Ad~i~~l 136 (142)
T 2orw_A 68 EMRKYIEEDTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKK 136 (142)
T ss_dssp GGGGGCCTTEEEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEEC
T ss_pred HCCCCCCCCCEEEEEEEHHHCCHHHHHHHHHHEECCEEEEEEEEEEEECCCCHHHHHHHHHCCCCEEEE
T ss_conf 300000566119998504531157999977712378589999975211387377799998407859999
No 220
>>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase, structural genomics, NPPSFA; 2.10A {Thermus thermophilus HB8} (A:124-193)
Probab=25.88 E-value=44 Score=14.30 Aligned_cols=34 Identities=12% Similarity=0.192 Sum_probs=24.6
Q ss_pred CCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEEEE
Q ss_conf 1588999838665-899999999849889999831
Q gi|254780936|r 112 GLEHLVIFSGDGC-FTTLVAALQRKVKKVTIVSTV 145 (182)
Q Consensus 112 ~~d~~iLvSGD~D-f~pli~~lr~~Gk~V~v~~~~ 145 (182)
|...-+.+||+.+ ...+.+.++++|.++..+.+.
T Consensus 33 Nsp~~~VisG~~~~i~~~~~~l~~~gi~~~~L~v~ 67 (70)
T 2cuy_A 33 NAPEQTVISGRRQAVEEAAERLKERRARVVFLPVS 67 (70)
T ss_dssp EETTEEEEEEEHHHHHHHHHHHHHTTCEEEECSCS
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHCCCEEEECCCC
T ss_conf 78887686125320357777665228435535888
No 221
>>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} (A:1-68,A:152-323)
Probab=25.86 E-value=44 Score=14.30 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=35.3
Q ss_pred HHHHHHHHHCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEEEEC
Q ss_conf 99999994211588999838665-8999999998498899998315
Q gi|254780936|r 102 LAVDAFEQSEGLEHLVIFSGDGC-FTTLVAALQRKVKKVTIVSTVL 146 (182)
Q Consensus 102 laiD~~~~a~~~d~~iLvSGD~D-f~pli~~lr~~Gk~V~v~~~~~ 146 (182)
++.++++..+..|.+|...|-+. +.-+...+|+.+..+.++++..
T Consensus 81 ~g~EI~~Q~~~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~~iigVep 126 (240)
T 1v71_A 81 AAKELFEEVGPLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEP 126 (240)
T ss_dssp HHHHHHHHHCCCSEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 9999999738999899857818889999999997499854741012
No 222
>>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 1iwc_A 1iwf_A (A:273-289,A:381-393,A:607-763)
Probab=25.28 E-value=45 Score=14.23 Aligned_cols=35 Identities=23% Similarity=0.181 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCC
Q ss_conf 6658999999998498899998315776547089998521
Q gi|254780936|r 122 DGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQAD 161 (182)
Q Consensus 122 D~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad 161 (182)
-.|-..+++.+|++|..|..++- | -+=+..|+. ||
T Consensus 129 Pe~K~~~V~~lq~~g~~V~miGD--G--~NDa~AL~~-Ad 163 (187)
T 3ixz_A 129 PQQKLVIVESCQRLGAIVAVTGD--G--VNDSPALKK-AD 163 (187)
T ss_pred HHHHHHHHHHHHHCCCEEEEECC--C--CCCHHHHHH-CC
T ss_conf 89999999999977995899789--9--754999985-79
No 223
>>2b34_A F35G2.2, MAR1 ribonuclease; isochorismatase family, structural genomics, PSI, protein structure initiative; 2.14A {Caenorhabditis elegans} (A:)
Probab=25.26 E-value=45 Score=14.23 Aligned_cols=155 Identities=14% Similarity=0.104 Sum_probs=74.5
Q ss_pred CCCCCEEEEEEEHHHHHHHHHHCCCC--CCHHHHHHHHHHCCE-EEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 87887189998078999999850876--798999999851792-999999730688731467775799988975595697
Q gi|254780936|r 2 FDPREKIALFIDGANLYASSKALGFD--IDYRKLLKAFRSRAI-VIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVV 78 (182)
Q Consensus 2 ~~~~~rvaIfID~~Nl~~~~~~~~~~--~d~~~L~~~l~~~~~-l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~ 78 (182)
+++.+.+-|.||.+|=|...-..+-. -...+|++.....+. +.............. .........+-.++
T Consensus 10 ~~~~~tALivID~Qn~f~~~~~~~~~~i~~i~~li~~ar~~~~pvi~~~~~~~~~~~~~-------~~~~~~~~~~~~v~ 82 (199)
T 2b34_A 10 INPTNSALFVCDLQEKFASNIKYFPEIITTSRRLIDAARILSIPTIVTEQYPKGLGHTV-------PTLKEGLAENTPIF 82 (199)
T ss_dssp CCTTTEEEEEECCBGGGTTSSTTHHHHHHHHHHHHHHHHHTTCCEEEEEESHHHHCCBC-------HHHHHHSCTTCCEE
T ss_pred CCCCCEEEEEEECCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC-------CCCCCCCCCCCCCE
T ss_conf 79898899999686203055668999999999999999984983999934677654434-------31120003432012
Q ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHH--HHHHHHHHHCCCEEEEEEEECCCCCCC--HH
Q ss_conf 53458953788865435653299999999942115889998386658--999999998498899998315776547--08
Q gi|254780936|r 79 AKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCF--TTLVAALQRKVKKVTIVSTVLSDPSMA--SD 154 (182)
Q Consensus 79 ~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df--~pli~~lr~~Gk~V~v~~~~~~~~~~~--S~ 154 (182)
.|.. . .+.+ .+.+.....+++++|+--.+|. .-.+..+.++|.+|+++.-.-+..... ..
T Consensus 83 ~K~~---~---------saf~----l~~ll~~~gi~~ivi~G~~td~CV~~Ta~~a~~~G~~v~vv~Da~a~~~~~~h~~ 146 (199)
T 2b34_A 83 DKTK---F---------SMCI----PPTEDTLKKVQNVILVGIEAHVCVLQTTYDLLERGLNVHVVVDAVSSRSHTDRHF 146 (199)
T ss_dssp EESB---S---------SSCC----GGGHHHHTTCSEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSSHHHHHH
T ss_pred EECC---C---------CCCC----CHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHH
T ss_conf 3313---5---------5668----8799961787769998764260156759999987997899587668899899999
Q ss_pred HHHHHC---CCCEEHHHHHHHHCCCCCC
Q ss_conf 999852---1115189978762258311
Q gi|254780936|r 155 QLRRQA---DYFMDLAYLKNEIARDPDE 179 (182)
Q Consensus 155 ~L~~~a---d~fi~l~~l~~~i~r~~~~ 179 (182)
.|.... -..+..+++...+.+..+.
T Consensus 147 al~~~~~~~~~Vv~~~e~l~~l~~~~~~ 174 (199)
T 2b34_A 147 AFKQMEQAGAILTTSEATILGLVGGSDH 174 (199)
T ss_dssp HHHHHHHHTCEEECHHHHHHHHHCBTTS
T ss_pred HHHHHHHCCCEEECHHHHHHHHHHHHCC
T ss_conf 9999998799997599999999987099
No 224
>>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structural genomics, protein structure initiative; 2.20A {Bacteroides fragilis nctc 9343} (A:1-116,A:254-304)
Probab=25.25 E-value=45 Score=14.22 Aligned_cols=48 Identities=10% Similarity=-0.020 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHH--CCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEEE
Q ss_conf 53299999999942--11588999838665-89999999984988999983
Q gi|254780936|r 97 SMDVELAVDAFEQS--EGLEHLVIFSGDGC-FTTLVAALQRKVKKVTIVST 144 (182)
Q Consensus 97 ~~Dv~laiD~~~~a--~~~d~~iLvSGD~D-f~pli~~lr~~Gk~V~v~~~ 144 (182)
+-|..--..+++.. ..+|.++|...|++ ..++++++++.|..|+.+..
T Consensus 52 ~~d~~~q~~~i~~li~~~vDgIii~p~~~~~~~~~i~~~~~~gIPvV~id~ 102 (167)
T 3gbv_A 52 PYDYNSFVATSQAVIEEQPDGVXFAPTVPQYTKGFTDALNELGIPYIYIDS 102 (167)
T ss_dssp SSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHHHHHHHHHTCCEEEESS
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 899999999999999759998999604532029999999971977999960
No 225
>>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} (A:221-279,A:318-447,A:506-585)
Probab=25.14 E-value=45 Score=14.21 Aligned_cols=60 Identities=7% Similarity=-0.000 Sum_probs=40.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCH----H-HHHHHCC---CCEEHHHHHHHH
Q ss_conf 8899983866589999999984988999983157765470----8-9998521---115189978762
Q gi|254780936|r 114 EHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMAS----D-QLRRQAD---YFMDLAYLKNEI 173 (182)
Q Consensus 114 d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S----~-~L~~~ad---~fi~l~~l~~~i 173 (182)
+..+--.+|.-...++..+|+.|..|..+++..+....++ + .|+++|. +|.+-+++...+
T Consensus 193 ~~~~~~~~~~~~~~~c~~~k~~~i~i~ti~~~~~~~~~~~~~~~~~~l~~cas~~~~y~~~~~~~~~f 260 (269)
T 2ww8_A 193 TAKITNHGDPTRWYYNGNIAPDGYDVFTVGIGINGDPGTDEATATSFMQSISSKPENYTNVTDTTKIL 260 (269)
T ss_dssp SCCBCBSHHHHHHHHHHHTGGGCCEEEEEEESCCCTTTSCHHHHHHHHHHTSSSGGGEEEESSGGGHH
T ss_pred CEEEEECCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCEE
T ss_conf 05762047430578875204676303577677156421002343057756611665326405665111
No 226
>>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomics, protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} (A:1-88,A:248-352)
Probab=25.04 E-value=41 Score=14.45 Aligned_cols=56 Identities=11% Similarity=0.066 Sum_probs=31.0
Q ss_pred CCEEEEECCCH--HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHH-HHCCC-CEEHHHHHHHHCC
Q ss_conf 58899983866--5899999999849889999831577654708999-85211-1518997876225
Q gi|254780936|r 113 LEHLVIFSGDG--CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLR-RQADY-FMDLAYLKNEIAR 175 (182)
Q Consensus 113 ~d~~iLvSGD~--Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~-~~ad~-fi~l~~l~~~i~r 175 (182)
....++|-+|. |.. -.+..|.+.+.+....... +.... ..+|. +-++.++.+.+.+
T Consensus 131 ~~~~i~vgDd~~~Di~----~A~~aG~~tilV~tg~~~~---~~~~~~~~pd~vi~~l~el~~~l~~ 190 (193)
T 3kc2_A 131 FHAVFXVGDNPASDII----GAQNYGWNSCLVKTGVYNE---GDDLKECKPTLIVNDVFDAVTKTLE 190 (193)
T ss_dssp SSEEEEEESCTTTHHH----HHHHHTCEEEECSSSSCCT---TCCCTTCCCSEECSSHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHH----HHHHCCCCEEEECCCCCCC---CCCCCCCCCCEEECCHHHHHHHHHH
T ss_conf 5538997588189999----9998699889989889896---4567678999985999999999998
No 227
>>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination; 1.02A {Saccharomyces cerevisiae} (A:)
Probab=24.98 E-value=45 Score=14.19 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=26.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 8899983866589999999984988999983
Q gi|254780936|r 114 EHLVIFSGDGCFTTLVAALQRKVKKVTIVST 144 (182)
Q Consensus 114 d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~ 144 (182)
..-+.|.||-|...+++.+++.|+.+.++..
T Consensus 42 ~~~v~V~~~~~~~~i~~~i~~~Gy~a~~~~~ 72 (73)
T 1cc8_A 42 KQLVDVYTTLPYDFILEKIKKTGKEVRSGKQ 72 (73)
T ss_dssp TTEEEEEESSCHHHHHHHHHTTSSCEEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 9899993069999999999997994688521
No 228
>>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A (A:1-126)
Probab=24.81 E-value=46 Score=14.17 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=31.3
Q ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 9994211588999838665899999999849889999
Q gi|254780936|r 106 AFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 106 ~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
.+-..+.+|.+++.|...--.+.+..+-+.||.|.+-
T Consensus 59 ~~~~~~~vd~V~i~~~~~~h~~~~~~~l~~Gk~v~~e 95 (126)
T 3gdo_A 59 EITNDPAIELVIVTTPSGLHYEHTMACIQAGKHVVME 95 (126)
T ss_dssp HHHTCTTCCEEEECSCTTTHHHHHHHHHHTTCEEEEE
T ss_pred HHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECC
T ss_conf 9955999998998156433333222223333101114
No 229
>>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A (A:1-75,A:195-259)
Probab=24.75 E-value=46 Score=14.17 Aligned_cols=51 Identities=12% Similarity=0.010 Sum_probs=28.5
Q ss_pred EEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHH---CCC-CEEHHHHHHHHCC
Q ss_conf 9983866---589999999984988999983157765470899985---211-1518997876225
Q gi|254780936|r 117 VIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQ---ADY-FMDLAYLKNEIAR 175 (182)
Q Consensus 117 iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~---ad~-fi~l~~l~~~i~r 175 (182)
+++=||+ |+.+ .++.|...+.+.... .....+... +|. +-++.++...+.+
T Consensus 80 ~~~VGD~~~~Di~~----a~~~G~~ti~v~~g~----~~~~~~~~~~~~pd~~i~~l~el~~~l~~ 137 (140)
T 2ho4_A 80 AVXIGDDCRDDVDG----AQNIGXLGILVKTGK----YKAADEEKINPPPYLTCESFPHAVDHILQ 137 (140)
T ss_dssp EEEEESCTTTTHHH----HHHTTCEEEEESSTT----CCTTGGGGSSSCCSEEESCHHHHHHHHHH
T ss_pred CEEECCCHHHHHHH----HHHCCCCEEEECCCC----CCHHHHHCCCCCCCEEECCHHHHHHHHHH
T ss_conf 24743783758999----998799299989999----99678614689997898999999999998
No 230
>>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} (A:)
Probab=24.72 E-value=46 Score=14.16 Aligned_cols=68 Identities=6% Similarity=0.021 Sum_probs=31.0
Q ss_pred EEEEEEEHHHHHHHHHH----CC-------CCCCHH----HHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 18999807899999985----08-------767989----9999985179299999973068873146777579998897
Q gi|254780936|r 7 KIALFIDGANLYASSKA----LG-------FDIDYR----KLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLH 71 (182)
Q Consensus 7 rvaIfID~~Nl~~~~~~----~~-------~~~d~~----~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~ 71 (182)
.+..|.++.+++....+ .. +.+.-. .|.+.+. .+.-++......... ..........|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~i~~A~~~I~i~~~~~~~~~i~~~L~~a~~-rGv~V~ii~~~~~~~-----~~~~~~~~~~l~ 78 (155)
T 1byr_A 5 VQVGYSPEGSARVLVLSAIDSAKTSIRMMAYSFTAPDIMKALVAAKK-RGVDVKIVIDERGNT-----GRASIAAMNYIA 78 (155)
T ss_dssp EEEEEETTTHHHHHHHHHHHHCSSEEEEEESSBCCHHHHHHHHHHHH-TTCEEEEEEESTTCC-----SHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHHH-CCCEEEEEEEECCCC-----CCHHHHHHHHHH
T ss_conf 78998998609999999998488299999964049899999999986-498599999850345-----500478888877
Q ss_pred HCCCEEEEE
Q ss_conf 559569753
Q gi|254780936|r 72 YNGFQVVAK 80 (182)
Q Consensus 72 ~~g~~v~~~ 80 (182)
..|..+...
T Consensus 79 ~~~v~~~~~ 87 (155)
T 1byr_A 79 NSGIPLRTD 87 (155)
T ss_dssp HTTCCEEEE
T ss_pred HHCCCCCCC
T ss_conf 502332345
No 231
>>3d8x_A Thioredoxin reductase 1; NADPH, yeast, , modpipe model of A6Z, cytoplasm, FAD, flavoprotein, NADP, oxidoreductase, redox- active center; HET: FAD NAP; 2.80A {Saccharomyces cerevisiae} (A:1-126,A:284-326)
Probab=24.44 E-value=46 Score=14.13 Aligned_cols=34 Identities=21% Similarity=0.130 Sum_probs=26.9
Q ss_pred HHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 42115889998386658999999998498899998
Q gi|254780936|r 109 QSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 109 ~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~ 143 (182)
...+||.+||=+|-+-...++. |.+.|.+|.++=
T Consensus 7 ~~~~yDVIIIGaGpAGl~AA~~-aar~G~kVlvIE 40 (169)
T 3d8x_A 7 HHVHNKVTIIGSGPAAHTAAIY-LARAEIKPILYE 40 (169)
T ss_dssp --CEEEEEEECCSHHHHHHHHH-HHHTTCCCEEEC
T ss_pred CCCCCCEEEECCCHHHHHHHHH-HHHCCCCEEEEE
T ss_conf 7761899999986999999999-997899889994
No 232
>>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE; 1.75A {Archaeoglobus fulgidus} (A:1-132)
Probab=24.30 E-value=47 Score=14.11 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=33.8
Q ss_pred HHHHHHHHHHH-HCCCCEEEEECCCHH----HHHHHHHHHHCCCEEEEEE
Q ss_conf 29999999994-211588999838665----8999999998498899998
Q gi|254780936|r 99 DVELAVDAFEQ-SEGLEHLVIFSGDGC----FTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 99 Dv~laiD~~~~-a~~~d~~iLvSGD~D----f~pli~~lr~~Gk~V~v~~ 143 (182)
......+++.. +..=++++|+|||-= +..+++.++++|..|.++-
T Consensus 73 ~~~~~~~~~~~~~~g~~V~~l~~GDP~i~~~~~~l~~~~~~~gi~v~viP 122 (132)
T 1vhv_A 73 DLEENSFRLIERAKSKSVVLLVPGDPXVATTHSAIKLEAERKGVKTRIIH 122 (132)
T ss_dssp HHTTTHHHHHHHHTTSEEEEEESBCTTSSSHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 67788999999970796899976886666506889999997498649974
No 233
>>1vkf_A Glycerol uptake operon antiterminator-related protein; TM1436, structural genomics, JCSG, PSI, protein structure initiative; HET: CIT; 1.65A {Thermotoga maritima MSB8} (A:)
Probab=24.23 E-value=47 Score=14.10 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=16.3
Q ss_pred CCEEEEECCCH-HHHHHHHHHHHCCCEEEEE
Q ss_conf 58899983866-5899999999849889999
Q gi|254780936|r 113 LEHLVIFSGDG-CFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 113 ~d~~iLvSGD~-Df~pli~~lr~~Gk~V~v~ 142 (182)
+.+++|..||= ..-.++.++++.||.|.|=
T Consensus 32 ~~~ifll~g~I~~L~~~v~~lk~~gK~vfVH 62 (188)
T 1vkf_A 32 PDVVFLLKSDILNLKFHLKILKDRGKTVFVD 62 (188)
T ss_dssp SSEEEECCEETTTHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9999995684888999999999869989998
No 234
>>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} (A:)
Probab=23.99 E-value=39 Score=14.61 Aligned_cols=68 Identities=12% Similarity=0.055 Sum_probs=32.3
Q ss_pred HHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCC-EEEEECCCH---H-----HHHHHHHHHH
Q ss_conf 799988975595697534589537888654356532999999999421158-899983866---5-----8999999998
Q gi|254780936|r 64 HPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLE-HLVIFSGDG---C-----FTTLVAALQR 134 (182)
Q Consensus 64 ~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d-~~iLvSGD~---D-----f~pli~~lr~ 134 (182)
......|++.|+.+..-.- + -.. ...+.-.+.+...+.+ .++|+|-+. + +.-+..+.+.
T Consensus 26 ~~L~~~Le~~g~~~~~d~~----d------l~~--G~~~~~~I~~~i~~s~~~i~vlS~~~l~S~w~~~E~~~a~~~~~~ 93 (176)
T 3jrn_A 26 SFLYKELVRRSIRTFKDDK----E------LEN--GQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKK 93 (176)
T ss_dssp HHHHHHHHHTTCCEECCCC--------------------------CCTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCEEEEECH----H------HCC--CCCHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999987996885231----2------016--874599999999857689899506731023108989999999975
Q ss_pred CCCEEEEEE
Q ss_conf 498899998
Q gi|254780936|r 135 KVKKVTIVS 143 (182)
Q Consensus 135 ~Gk~V~v~~ 143 (182)
.+..+.++.
T Consensus 94 ~~~~~i~~~ 102 (176)
T 3jrn_A 94 GSITVMPIF 102 (176)
T ss_dssp TSCEEEEEE
T ss_pred CCCCCEEEE
T ss_conf 599707999
No 235
>>1zh8_A Oxidoreductase; TM0312, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: MSE NAP; 2.50A {Thermotoga maritima MSB8} (A:1-143)
Probab=23.78 E-value=48 Score=14.05 Aligned_cols=34 Identities=12% Similarity=-0.057 Sum_probs=30.1
Q ss_pred HHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 4211588999838665899999999849889999
Q gi|254780936|r 109 QSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 109 ~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
....+|.+++.+......+.+..+-+.|+.|.+-
T Consensus 79 ~~~~id~v~i~~~~~~h~~~~~~al~~g~~V~~E 112 (143)
T 1zh8_A 79 ESGLVDAVDLTLPVELNLPFIEKALRKGVHVICE 112 (143)
T ss_dssp HSSCCSEEEECCCGGGHHHHHHHHHHTTCEEEEE
T ss_pred HCCCCCEEEECCCEECCCCCCCCCCCCCHHHHHC
T ss_conf 1887654642121000122111223321122204
No 236
>>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A (A:)
Probab=23.59 E-value=48 Score=14.03 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=26.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 889998386658999999998498899998
Q gi|254780936|r 114 EHLVIFSGDGCFTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 114 d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~ 143 (182)
..-+.|++|-|...+++.+++.|..+.++.
T Consensus 37 ~~~~~V~~~~~~~~i~~ai~~~Gy~a~~~~ 66 (68)
T 3iwl_A 37 NKKVCIESEHSMDTLLATLKKTGKTVSYLG 66 (68)
T ss_dssp TTEEEEEESSCHHHHHHHHHTTCSCEEEEE
T ss_pred CCEEEEEECCCHHHHHHHHHHHCCEEEEEE
T ss_conf 989999961999999999998599789963
No 237
>>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} (A:1-162)
Probab=23.48 E-value=48 Score=14.01 Aligned_cols=14 Identities=7% Similarity=-0.128 Sum_probs=5.9
Q ss_pred HHHHHHCCCEEEEE
Q ss_conf 99999849889999
Q gi|254780936|r 129 VAALQRKVKKVTIV 142 (182)
Q Consensus 129 i~~lr~~Gk~V~v~ 142 (182)
.+.+++.|..+++.
T Consensus 109 ~~~A~~~g~~~i~t 122 (162)
T 2pg3_A 109 SIYAYQVGAEAVIT 122 (162)
T ss_dssp HHHHHHHTCSEEEC
T ss_pred HHHHHHHHHHHCCC
T ss_conf 89999865310146
No 238
>>2r79_A Periplasmic binding protein; heme transport, transport protein; HET: HEM; 2.40A {Pseudomonas aeruginosa} (A:1-91)
Probab=23.42 E-value=49 Score=14.01 Aligned_cols=28 Identities=11% Similarity=0.093 Sum_probs=24.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 8999838665899999999849889999
Q gi|254780936|r 115 HLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 115 ~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
.+|+.++.+.+....+.+++.|..|.++
T Consensus 61 Dlvi~~~~~~~~~~~~~l~~~gi~v~v~ 88 (91)
T 2r79_A 61 DILIGTEEMGPPPVLKQLEGAGVRVETL 88 (91)
T ss_dssp SEEEECTTCCCHHHHHHHHHTTCCEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHCCCCCCCC
T ss_conf 8699735642055777765316732135
No 239
>>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} (A:1-58,A:216-269,A:483-546)
Probab=23.38 E-value=47 Score=14.10 Aligned_cols=33 Identities=12% Similarity=0.156 Sum_probs=28.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 115889998386658999999998498899998
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~ 143 (182)
.++|.+||=+|=+-...+.+..++.|.+|.|+-
T Consensus 12 ~~~DvvIIGaG~aG~~~A~~La~~~g~~V~ilE 44 (176)
T 2jbv_A 12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVE 44 (176)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEEC
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 943389989648999999999768698699983
No 240
>>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding site, hydrolase; 3.20A {Spinacia oleracea} (A:95-371)
Probab=23.33 E-value=49 Score=14.00 Aligned_cols=38 Identities=11% Similarity=0.143 Sum_probs=23.3
Q ss_pred HHCCCCEEEEECCCHHHHH------------HHHHHHHCCCEEEEEEEEC
Q ss_conf 4211588999838665899------------9999998498899998315
Q gi|254780936|r 109 QSEGLEHLVIFSGDGCFTT------------LVAALQRKVKKVTIVSTVL 146 (182)
Q Consensus 109 ~a~~~d~~iLvSGD~Df~p------------li~~lr~~Gk~V~v~~~~~ 146 (182)
.+...+..++|.+-+|--| .++++++.|++|.++.-.-
T Consensus 121 ~~~~~~~t~vv~~ts~~~~~~r~~~~~~a~~~AE~~r~~G~~Vll~~Dsl 170 (277)
T 1fx0_A 121 ERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDL 170 (277)
T ss_dssp GGTGGGSEEEEEECTTSCGGGTTHHHHHHHHHHHHHHHTTCEEEEEEECH
T ss_pred CCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 27863233100246667788888888889899999996467726996185
No 241
>>3gjz_A Microcin immunity protein MCCF; niaid structural genomic centers for infectious diseases, csgid, immune system, structural genomics; 2.10A {Bacillus anthracis str} (A:1-142)
Probab=23.31 E-value=49 Score=13.99 Aligned_cols=78 Identities=14% Similarity=0.055 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--CCCCEEEEECCCHHHHHHHH-----HH
Q ss_conf 777579998897559569753458953788865435653299999999942--11588999838665899999-----99
Q gi|254780936|r 60 FSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS--EGLEHLVIFSGDGCFTTLVA-----AL 132 (182)
Q Consensus 60 ~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a--~~~d~~iLvSGD~Df~pli~-----~l 132 (182)
......-.+.|+..|++|...+..... ...-.+.|-.=+-|.++.. +.++.++-+.|=-.-..++. .+
T Consensus 30 ~~~~~~~i~~l~~~G~~v~~~~~~~~~-----~~~~agtd~~Ra~dL~~a~~d~~i~~I~~~rGGyg~~riL~~ld~~~i 104 (142)
T 3gjz_A 30 PKRFERAKSYLLQKGFHILEGSLTGRY-----DYYRSGSIQERAKELNALIRNPNVSCIXSTIGGXNSNSLLPYIDYDAF 104 (142)
T ss_dssp HHHHHHHHHHHHHTTCEEEECTTTTCC-----BTTBSSCHHHHHHHHHHHHTCTTEEEEEESCCCSCGGGGGGGCCHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCC-----CCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCHHHH
T ss_conf 999999999998589899866531434-----564579999999999986315688999989667899875013454455
Q ss_pred HHCCCEEEEE
Q ss_conf 9849889999
Q gi|254780936|r 133 QRKVKKVTIV 142 (182)
Q Consensus 133 r~~Gk~V~v~ 142 (182)
+++.|.++.+
T Consensus 105 ~~~pK~~iGf 114 (142)
T 3gjz_A 105 QNNPKIXIGY 114 (142)
T ss_dssp HHSCCEEEEC
T ss_pred HCCCCEEEEE
T ss_conf 0088469861
No 242
>>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, structurual genomics; 2.20A {Pseudomonas aeruginosa PAO1} (A:1-131,A:320-340)
Probab=23.28 E-value=38 Score=14.68 Aligned_cols=33 Identities=3% Similarity=-0.155 Sum_probs=27.2
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 211588999838665899999999849889999
Q gi|254780936|r 110 SEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 110 a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
...+|.+++.++.+=-.+....+.+.|++|+=.
T Consensus 66 ~~~vDvVf~a~~~~~s~~~~~~~~~~g~~VIDl 98 (152)
T 2hjs_A 66 FSSVGLAFFAAAAEVSRAHAERARAAGCSVIDL 98 (152)
T ss_dssp GGGCSEEEECSCHHHHHHHHHHHHHTTCEEEET
T ss_pred HHCCHHHEECCCCCCHHHHHHHHCCCCEEEEEC
T ss_conf 413023022578750433202314541699834
No 243
>>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative; 2.00A {Streptococcus agalactiae serogroup V} (A:1-128,A:277-329)
Probab=23.27 E-value=49 Score=13.99 Aligned_cols=34 Identities=12% Similarity=0.058 Sum_probs=29.5
Q ss_pred HHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 4211588999838665899999999849889999
Q gi|254780936|r 109 QSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 109 ~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
..+.+|.+++.|....-.+.+..+-+.|+.|.+-
T Consensus 64 ~~~~iD~V~Iatp~~~H~~~~~~AL~~GkhVl~E 97 (181)
T 3evn_A 64 ADESIDVIYVATINQDHYKVAKAALLAGKHVLVE 97 (181)
T ss_dssp TCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCHHCCCCCHHHCCCCCCCCCCCCCHHHCC
T ss_conf 3876440002342000013221011333110125
No 244
>>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis V583} (A:)
Probab=23.25 E-value=49 Score=13.99 Aligned_cols=29 Identities=7% Similarity=0.217 Sum_probs=24.5
Q ss_pred EEEEECCCH-HHHHHHHHHHHCCCEEEEEE
Q ss_conf 899983866-58999999998498899998
Q gi|254780936|r 115 HLVIFSGDG-CFTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 115 ~~iLvSGD~-Df~pli~~lr~~Gk~V~v~~ 143 (182)
-++-++||. +.-.++..|+++|..|++++
T Consensus 69 l~l~l~g~~~~~~~al~~L~~~~v~vEvi~ 98 (100)
T 2qsw_A 69 LYIQLLGEEQNILAAIEGLRKLRVETEVIG 98 (100)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCEEEESS
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 999996899999999999998698899905
No 245
>>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I (A:1-43,A:166-287)
Probab=23.19 E-value=49 Score=13.98 Aligned_cols=14 Identities=21% Similarity=0.152 Sum_probs=8.5
Q ss_pred HHHHHHHCCCEEEE
Q ss_conf 99889755956975
Q gi|254780936|r 66 LLDWLHYNGFQVVA 79 (182)
Q Consensus 66 ~~~~l~~~g~~v~~ 79 (182)
-.+.|+..|+++..
T Consensus 49 ~I~~Lr~~Gi~v~i 62 (165)
T 3a1c_A 49 AVQELKRMGIKVGM 62 (165)
T ss_dssp HHHHHHHTTCEEEE
T ss_pred HHHHHHHCCCCEEE
T ss_conf 99999876997899
No 246
>>3cs3_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; 2.40A {Enterococcus faecalis V583} (A:1-101,A:232-277)
Probab=23.09 E-value=49 Score=13.97 Aligned_cols=63 Identities=8% Similarity=0.067 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 75799988975595697534589537888654356532999999999421158899983866589999999984988999
Q gi|254780936|r 62 PLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTI 141 (182)
Q Consensus 62 ~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v 141 (182)
-.....+.+...|+++...+. +..........+| -+||+ +=..-.+.++.+++.|..|++
T Consensus 26 ii~gI~~~a~~~Gy~lli~~s----~~~~~~l~~~~vD---------------GIIi~-~~~~~~~~i~~l~~~~IPvV~ 85 (147)
T 3cs3_A 26 LLEGIKKGLALFDYEMIVCSG----KKSHLFIPEKMVD---------------GAIIL-DWTFPTKEIEKFAERGHSIVV 85 (147)
T ss_dssp HHHHHHHHHHTTTCEEEEEES----TTTTTCCCTTTCS---------------EEEEE-CTTSCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHCCCEEEEECC----HHHHHHHHHCCCC---------------EEECC-CCCHHHHHHHHHHCCCCCCCC
T ss_conf 999999999985998999817----6889999971977---------------42011-320018999875214887432
Q ss_pred EEE
Q ss_conf 983
Q gi|254780936|r 142 VST 144 (182)
Q Consensus 142 ~~~ 144 (182)
+..
T Consensus 86 id~ 88 (147)
T 3cs3_A 86 LDR 88 (147)
T ss_dssp SSS
T ss_pred CCC
T ss_conf 223
No 247
>>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET: GLP MES; 1.57A {Escherichia coli} (A:211-368)
Probab=22.89 E-value=50 Score=13.94 Aligned_cols=48 Identities=0% Similarity=0.031 Sum_probs=32.0
Q ss_pred CCCCEEEEECCCHHHHH----HHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCCCCE
Q ss_conf 11588999838665899----9999998498899998315776547089998521115
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTT----LVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFM 164 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~p----li~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad~fi 164 (182)
..=|.+|++|..+--.+ +++.++++|.++++++..... .+...||..+
T Consensus 61 ~~~d~vi~is~~g~t~e~~~~~~~~~k~~g~~~i~it~~~~s------~~~~~~d~~l 112 (158)
T 1moq_A 61 DADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAG------FVSSDNMHII 112 (158)
T ss_dssp STTSCEEEESCCHHHHHHHHHHHHHTGGGTCCEEEEEEGGGC------CCCBTTEEEE
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC------CCCCCCCEEE
T ss_conf 899738997058668899999999999649929999668722------2455775699
No 248
>>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} (A:)
Probab=22.78 E-value=50 Score=13.93 Aligned_cols=56 Identities=18% Similarity=0.101 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH---CCCCEEEEECC----CHHHHHHH
Q ss_conf 77579998897559569753458953788865435653299999999942---11588999838----66589999
Q gi|254780936|r 61 SPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS---EGLEHLVIFSG----DGCFTTLV 129 (182)
Q Consensus 61 ~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a---~~~d~~iLvSG----D~Df~pli 129 (182)
.........|...|+++....... -|.....++++.+ ..+|.+|..-| ..|+++-+
T Consensus 31 ~n~~~l~~~l~~~G~~v~~~~~v~-------------Dd~~~i~~~i~~~~~~~~~dlVittGG~g~~~~D~t~~~ 93 (169)
T 1y5e_A 31 KSGQLLHELLKEAGHKVTSYEIVK-------------DDKESIQQAVLAGYHKEDVDVVLTNGGTGITKRDVTIEA 93 (169)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEEEC-------------SSHHHHHHHHHHHHTCTTCSEEEEECCCSSSTTCCHHHH
T ss_pred CCHHHHHHHHHHCCCEEEEEEEEC-------------CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHH
T ss_conf 409999999997799567865635-------------879999999998752566758998435555543332466
No 249
>>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.40A {Thermotoga maritima} (A:1-85,A:212-271)
Probab=22.75 E-value=50 Score=13.92 Aligned_cols=90 Identities=17% Similarity=0.170 Sum_probs=41.5
Q ss_pred HHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH---HCCCCEEE------EECCCH---HHHHHHHH
Q ss_conf 7999889755956975345895378886543565329999999994---21158899------983866---58999999
Q gi|254780936|r 64 HPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQ---SEGLEHLV------IFSGDG---CFTTLVAA 131 (182)
Q Consensus 64 ~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~---a~~~d~~i------LvSGD~---Df~pli~~ 131 (182)
..+++.|+..|+.+.... ++.. .-..-..+.++. ....|.++ ++=||+ |..+
T Consensus 39 ~e~l~~L~~~G~~~~~vT-----N~~~-------~~~~~~~~~l~~~gi~~~~d~i~~sp~~~i~VGDs~~~Di~~---- 102 (145)
T 1vjr_A 39 LEFLETLKEKNKRFVFFT-----NNSS-------LGAQDYVRKLRNXGVDVPDDAVVTSKERXAXVGDRLYTDVKL---- 102 (145)
T ss_dssp HHHHHHHHHTTCEEEEEE-----SCTT-------SCHHHHHHHHHHTTCCCCGGGEEEHGGGEEEEESCHHHHHHH----
T ss_pred HHHHHHHHHCCCCEEEEC-----CCCC-------CCHHHHHHHHHHCCCCCCCCEECCHCHHCCCCCCCHHHHHHH----
T ss_conf 999999997699789945-----8998-------999999999985155665232345811035117781789999----
Q ss_pred HHHCCCEEEEEEEECCCCCCCHHHHHHH---CCCCE-EHHHHHHHH
Q ss_conf 9984988999983157765470899985---21115-189978762
Q gi|254780936|r 132 LQRKVKKVTIVSTVLSDPSMASDQLRRQ---ADYFM-DLAYLKNEI 173 (182)
Q Consensus 132 lr~~Gk~V~v~~~~~~~~~~~S~~L~~~---ad~fi-~l~~l~~~i 173 (182)
.++.|.+.+.+.. ..+....+... +|..+ ++.++.+.+
T Consensus 103 A~~aG~~ti~v~~----g~~~~~~~~~~~~~pd~~i~~l~el~~~l 144 (145)
T 1vjr_A 103 GKNAGIVSILVLT----GETTPEDLERAETKPDFVFKNLGELAKAV 144 (145)
T ss_dssp HHHHTCEEEEESS----SSCCHHHHHHCSSCCSEEESSHHHHHHHH
T ss_pred HHHCCCCEEEECC----CCCCHHHHHHCCCCCCEEECCHHHHHHHH
T ss_conf 9987994999898----99997889736899989989999999976
No 250
>>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, rossmann fold; HET: COA; 2.15A {Escherichia coli} (A:1-122)
Probab=22.67 E-value=50 Score=13.91 Aligned_cols=40 Identities=15% Similarity=0.051 Sum_probs=33.2
Q ss_pred HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 9999942115889998386658999999998498899998
Q gi|254780936|r 104 VDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 104 iD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~ 143 (182)
.+-+-....+|.+++.|.+..-.+.+..+-++|+.|.+-.
T Consensus 56 ~~~~~~~~~~D~V~i~~p~~~h~~~~~~~~~~g~~v~~ek 95 (122)
T 2nu8_A 56 VREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITI 95 (122)
T ss_dssp HHHHHHHHCCCEEEECCCGGGHHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEC
T ss_conf 2343304587069983250566677889886799889962
No 251
>>3k4h_A Putative transcriptional regulator; structural genomics, protein structure initiative; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98} (A:1-114,A:247-292)
Probab=22.62 E-value=50 Score=13.91 Aligned_cols=68 Identities=6% Similarity=0.208 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--CCCCEEEEECCCHHHHHHHHHHHHCCCEE
Q ss_conf 7579998897559569753458953788865435653299999999942--11588999838665899999999849889
Q gi|254780936|r 62 PLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS--EGLEHLVIFSGDGCFTTLVAALQRKVKKV 139 (182)
Q Consensus 62 ~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a--~~~d~~iLvSGD~Df~pli~~lr~~Gk~V 139 (182)
-...+.+.++..|+.+...+ .+-|.....+.++.. .++|-+||++.+.+ .+.++.+++.|+.+
T Consensus 31 l~~gi~~~~~~~g~~lil~~--------------~~~~~~~~~~~~~~l~~~~vDGiIi~~~~~~-~~~~~~l~~~~iPv 95 (160)
T 3k4h_A 31 VIRGISSFAHVEGYALYXST--------------GETEEEIFNGVVKXVQGRQIGGIILLYSREN-DRIIQYLHEQNFPF 95 (160)
T ss_dssp HHHHHHHHHHHTTCEEEECC--------------CCSHHHHHHHHHHHHHTTCCCEEEESCCBTT-CHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHCCCEEEEEE--------------CCCCHHHHHHHHHHHHCCCCCEEEEECCCCC-CHHHHHHHHCCCCC
T ss_conf 99999999998599999983--------------8998899999999986378665765302343-12333455325322
Q ss_pred EEEEE
Q ss_conf 99983
Q gi|254780936|r 140 TIVST 144 (182)
Q Consensus 140 ~v~~~ 144 (182)
+++..
T Consensus 96 V~id~ 100 (160)
T 3k4h_A 96 VLIGK 100 (160)
T ss_dssp EEESC
T ss_pred CCCCC
T ss_conf 33465
No 252
>>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} (A:1-101,A:173-259,A:359-376)
Probab=22.52 E-value=51 Score=13.90 Aligned_cols=70 Identities=13% Similarity=0.146 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHCCCEEE-EEEEEEECCCCCCCCCCC--CCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 467775799988975595697-534589537888654356--53299999999942115889998386658999999998
Q gi|254780936|r 58 QQFSPLHPLLDWLHYNGFQVV-AKVAKEFTENCGRKRVKS--SMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQR 134 (182)
Q Consensus 58 ~~~~~~~~~~~~l~~~g~~v~-~~~~~~~~~~~~~~~~kk--~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~ 134 (182)
..+......++.|+.+|++.+ ..|............... .+|- -..+..||..+++.+++
T Consensus 28 g~~~gi~~~ldyl~~lGv~~i~L~Pi~~s~~~~~gY~~~d~~~i~~-----------------~~Gt~~df~~li~~ah~ 90 (206)
T 1uok_A 28 GDLRGIISKLDYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIMN-----------------EFGTMEDWDELLHEMHE 90 (206)
T ss_dssp CCHHHHHTTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECG-----------------GGCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC-----------------CCCCHHHHHHHHHHHHH
T ss_conf 5999999826999975998899798857999998958546787571-----------------33999999999999998
Q ss_pred CCCEEEEEEE
Q ss_conf 4988999983
Q gi|254780936|r 135 KVKKVTIVST 144 (182)
Q Consensus 135 ~Gk~V~v~~~ 144 (182)
+|.+|++=.+
T Consensus 91 ~Gi~VilD~V 100 (206)
T 1uok_A 91 RNMKLMMDLV 100 (206)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEC
T ss_conf 8898999979
No 253
>>2jfg_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; nucleotide-binding, peptidoglycan synthesis, MURD ligase, ATP-binding, cell division, UMA, ADP; HET: KCX UMA ADP; 1.52A {Escherichia coli} (A:1-103)
Probab=22.47 E-value=23 Score=16.02 Aligned_cols=74 Identities=9% Similarity=0.018 Sum_probs=42.4
Q ss_pred HHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEE
Q ss_conf 9998897559569753458953788865435653299999999942115889998386658999999998498899
Q gi|254780936|r 65 PLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVT 140 (182)
Q Consensus 65 ~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~ 140 (182)
.-...|.+.|++|....-.... .+......+......-..-+....+|.+++..|=..-.|.+..+++.|..|+
T Consensus 20 ~~A~~L~~~G~~V~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~gi~i~ 93 (103)
T 2jfg_A 20 SCVDFFLARGVTPRVMDTRMTP--PGLDKLPEAVERHTGSLNDEWLMAADLIVASPGIALAHPSLSAAADAGIEIV 93 (103)
T ss_dssp HHHHHHHHTTCCCEEEESSSSC--TTGGGSCTTSCEEESBCCHHHHHHCSEEEECTTSCTTSHHHHHHHHTTCEEE
T ss_pred HHHHHHHHCCCEEEEEECCCCC--CHHHHHHHCCCEEECCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCEEE
T ss_conf 9999999787959999798993--2589998488976467797785898899989925889999999998599099
No 254
>>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} (A:1-140,A:297-339)
Probab=22.18 E-value=51 Score=13.85 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=17.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 115889998386658999999998498899998
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~ 143 (182)
..||.+||=+|=+-+..+.. +.+.|++|.++-
T Consensus 3 ~~yDViVIGaGpAG~~AA~~-aa~~G~kV~liE 34 (183)
T 3l8k_A 3 LKYDVVVIGAGGAGYHGAFR-LAKAKYNVLMAD 34 (183)
T ss_dssp EEEEEEEECCSHHHHHHHHH-HHHTTCCEEEEC
T ss_pred CCCCEEEECCCHHHHHHHHH-HHHCCCCEEEEE
T ss_conf 76858998989899999999-996899689996
No 255
>>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: LLP; 2.50A {Thermotoga maritima} (A:1-54,A:291-409)
Probab=22.12 E-value=52 Score=13.85 Aligned_cols=14 Identities=14% Similarity=-0.005 Sum_probs=7.1
Q ss_pred HHHHHHHHC-CCEEE
Q ss_conf 999889755-95697
Q gi|254780936|r 65 PLLDWLHYN-GFQVV 78 (182)
Q Consensus 65 ~~~~~l~~~-g~~v~ 78 (182)
.+.+.|... |+.+.
T Consensus 73 ~l~~~L~~i~Gv~~~ 87 (173)
T 2gb3_A 73 TVLKKLEEHGLKRFT 87 (173)
T ss_dssp HHHHHHHHTTCCCBC
T ss_pred HHHHHHHHCCCCCCC
T ss_conf 566676404874133
No 256
>>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} (A:1-141,A:282-337)
Probab=21.95 E-value=52 Score=13.82 Aligned_cols=41 Identities=10% Similarity=0.190 Sum_probs=18.9
Q ss_pred EEEEECCCH---HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHH
Q ss_conf 899983866---58999999998498899998315776547089
Q gi|254780936|r 115 HLVIFSGDG---CFTTLVAALQRKVKKVTIVSTVLSDPSMASDQ 155 (182)
Q Consensus 115 ~~iLvSGD~---Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~ 155 (182)
.+||.|..- -++.+=+.+|.--..|..++-..+....+..+
T Consensus 136 ~VIIAT~~~~~~g~i~~~~~~~t~~~~i~a~gd~~~~~~~~~~a 179 (197)
T 1ebd_A 136 NAIIATIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGPALAHKA 179 (197)
T ss_dssp EEEECCCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSCCCHHHH
T ss_pred EEEEECEEECCCCCEEECCCCCCCCCCEEEEECCCCCCCCCCHH
T ss_conf 58981358859973857999845799889985236887660154
No 257
>>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} (A:)
Probab=21.83 E-value=52 Score=13.81 Aligned_cols=14 Identities=21% Similarity=0.157 Sum_probs=6.9
Q ss_pred HHHHHHHHCCCEEE
Q ss_conf 99988975595697
Q gi|254780936|r 65 PLLDWLHYNGFQVV 78 (182)
Q Consensus 65 ~~~~~l~~~g~~v~ 78 (182)
.+.+.++..+..++
T Consensus 71 ~~~~~l~~~~~Dl~ 84 (216)
T 2ywr_A 71 RXALELKKKGVELV 84 (216)
T ss_dssp HHHHHHHHTTCCEE
T ss_pred HHHHHHHHCCCCEE
T ss_conf 99999985199688
No 258
>>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine; HET: SAH MES; 1.50A {Pyrococcus horikoshii OT3} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ... (A:1-122)
Probab=21.78 E-value=52 Score=13.80 Aligned_cols=46 Identities=9% Similarity=-0.072 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHH-CCCCEEEEECCCHH----HHHHHHHHHHCCCEEEEEE
Q ss_conf 3299999999942-11588999838665----8999999998498899998
Q gi|254780936|r 98 MDVELAVDAFEQS-EGLEHLVIFSGDGC----FTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 98 ~Dv~laiD~~~~a-~~~d~~iLvSGD~D----f~pli~~lr~~Gk~V~v~~ 143 (182)
.....+-.+.+.+ ..-++++|++||-= +..+++.+++.|..|.++-
T Consensus 62 ~~~~~~~~i~~~~~~g~~V~~l~~GDP~~~~~~~~l~~~~~~~~i~v~viP 112 (122)
T 2z6r_A 62 DVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIH 112 (122)
T ss_dssp HHHHHHHHHTHHHHTTSCEEEEESBCTTSSSSTHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEECC
T ss_conf 367899999999976998899967865544469999999986588159837
No 259
>>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} (A:1-142,A:288-339)
Probab=21.73 E-value=52 Score=13.80 Aligned_cols=12 Identities=8% Similarity=0.013 Sum_probs=5.0
Q ss_pred HHHCCCEEEEEE
Q ss_conf 975595697534
Q gi|254780936|r 70 LHYNGFQVVAKV 81 (182)
Q Consensus 70 l~~~g~~v~~~~ 81 (182)
+...+.++....
T Consensus 101 ~~~~~v~~~~~~ 112 (194)
T 2a8x_A 101 XKKNKITEIHGY 112 (194)
T ss_dssp HHHTTCEEECEE
T ss_pred HHCCCEEEEEEE
T ss_conf 741783799736
No 260
>>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.15A {Colwellia psychrerythraea 34H} (A:1-144,A:292-342)
Probab=21.73 E-value=46 Score=14.18 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=13.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 11588999838665899999999849889999
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
.++|.+||=+|-+-+..++. |.+.|++|.++
T Consensus 7 ~~yDviIIGaGpaG~~aA~~-la~~G~~v~ii 37 (195)
T 3ic9_A 7 INVDVAIIGTGTAGXGAYRA-AKKHTDKVVLI 37 (195)
T ss_dssp EEEEEEEECCSHHHHHHHHH-HHTTCSCEEEE
T ss_pred CCCCEEEECCCHHHHHHHHH-HHHCCCEEEEE
T ss_conf 78798998888899999999-98295989999
No 261
>>2c82_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; RV2870C, DOXP/MEP pathway, oxidoreductase, isoprene biosynthesis, metal-binding; 1.9A {Mycobacterium tuberculosis} PDB: 2jd1_A* 2jcv_A* 2jcz_A* 2jd2_A 2jcx_A* 2jcy_A 2jd0_A* (A:1-151)
Probab=21.62 E-value=53 Score=13.78 Aligned_cols=36 Identities=3% Similarity=-0.096 Sum_probs=30.7
Q ss_pred HHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 994211588999838665899999999849889999
Q gi|254780936|r 107 FEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 107 ~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
+-....+|.+++.|.+..-.+.+..+-+.||+|..-
T Consensus 91 ~~~~~~vD~V~i~t~~~~h~~~~~~Al~~GkhV~~e 126 (151)
T 2c82_A 91 LVEQTEADVVLNALVGALGLRPTLAALKTGARLALA 126 (151)
T ss_dssp HHHHCCCSEEEECCCSGGGHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCCCEEECCCCCCCCHHHHHHHHCCCEEEEE
T ss_conf 986321011333101125745799999579849996
No 262
>>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, substrate complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* (A:1-69,A:140-227,A:320-420)
Probab=21.60 E-value=52 Score=13.83 Aligned_cols=32 Identities=16% Similarity=0.120 Sum_probs=24.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 11588999838665899999999849889999
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
.++|++|+=+|=+-..-+....|..|.+|.++
T Consensus 31 ~~~~~~i~g~g~~g~~~a~~~~~~~~~~~~~~ 62 (258)
T 2dkh_A 31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIV 62 (258)
T ss_dssp SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEE
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 86899999939899999999872179978999
No 263
>>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum} (A:123-258,A:339-364)
Probab=21.54 E-value=53 Score=13.77 Aligned_cols=97 Identities=8% Similarity=0.114 Sum_probs=62.3
Q ss_pred HHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH-H
Q ss_conf 999999851792999999730688731467775799988975595697534589537888654356532999999999-4
Q gi|254780936|r 31 RKLLKAFRSRAIVIRAYYYTTVVGDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFE-Q 109 (182)
Q Consensus 31 ~~L~~~l~~~~~l~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~-~ 109 (182)
..+.+++...+--..+..|.. ...-......|.+.+++.|.++....... -+..|.. ..+. +
T Consensus 8 ~ala~~l~~~g~~~Vaii~~d----~~~G~~~~~~~~~~~~~~G~~vv~~~~~~----------~~~~d~~---~~v~~i 70 (162)
T 3lop_A 8 DKXITALVTIGVTRIGVLYQE----DALGKEAITGVERTLKAHALAITAXASYP----------RNTANVG---PAVDKL 70 (162)
T ss_dssp HHHHHHHHHTTCCCEEEEEET----THHHHHHHHHHHHHHHTTTCCCSEEEEEC----------TTSCCCH---HHHHHH
T ss_pred HHHHHHHHHCCCCEEEEEEEC----CCHHHHHHHHHHHHHHHCCCEEEEEEEEC----------CCCCCHH---HHHHHH
T ss_conf 999999998199889999836----83269999999999997698899999837----------9885368---999999
Q ss_pred -HCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf -21158899983866589999999984988999983
Q gi|254780936|r 110 -SEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVST 144 (182)
Q Consensus 110 -a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~ 144 (182)
....|.+++.+.-.+.+.+++.+++.|.+..+++.
T Consensus 71 ~~~~pdvIv~~~~~~~~~~~~~~~~~~g~~~~~i~~ 106 (162)
T 3lop_A 71 LAADVQAIFLGATAEPAAQFVRQYRARGGEAQLLGL 106 (162)
T ss_dssp HHSCCSEEEEESCHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred HHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 857989999968789999999999983899769997
No 264
>>1l1s_A Hypothetical protein MTH1491; structural genomics, PSI, protein structure initiative; 2.30A {Methanothermobacterthermautotrophicus} (A:)
Probab=21.54 E-value=53 Score=13.77 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=26.9
Q ss_pred CCCCEEEEECC--------CHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 11588999838--------66589999999984988999983
Q gi|254780936|r 111 EGLEHLVIFSG--------DGCFTTLVAALQRKVKKVTIVST 144 (182)
Q Consensus 111 ~~~d~~iLvSG--------D~Df~pli~~lr~~Gk~V~v~~~ 144 (182)
++.+..|++-| |+++.+.++.|++.|.++.+++.
T Consensus 33 ~~~~i~vV~~G~~i~~l~~~~~~~~~i~~L~~~gV~~~~C~~ 74 (113)
T 1l1s_A 33 ESVRIEVVAYSXGVNVLRRDSEYSGDVSELTGQGVRFCACSN 74 (113)
T ss_dssp SSEEEEEEECGGGGGGGBTTCTTHHHHHHHHHTTCEEEEEHH
T ss_pred CCCEEEEEEECHHHHHHHHCCHHHHHHHHHHHCCCEEEECHH
T ss_conf 797399999562899988197547999999878998996579
No 265
>>2o4u_X Dimeric dihydrodiol dehydrogenase; NADP-binding rossmann-fold domain, predominantly anti- parallel beta sheet, oxidoreductase; 2.00A {Macaca fascicularis} PDB: 2o48_X 2poq_X* (X:1-127,X:278-334)
Probab=21.50 E-value=53 Score=13.77 Aligned_cols=32 Identities=13% Similarity=-0.064 Sum_probs=28.7
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 21158899983866589999999984988999
Q gi|254780936|r 110 SEGLEHLVIFSGDGCFTTLVAALQRKVKKVTI 141 (182)
Q Consensus 110 a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v 141 (182)
.+++|.++|.|-++...+.+..+-+.||.|.+
T Consensus 64 d~~vD~V~Iatp~~~H~~~a~~al~aGkhVl~ 95 (184)
T 2o4u_X 64 DPNVEVAYVGTQHPQHKAAVMLCLAAGKAVLC 95 (184)
T ss_dssp CTTCSEEEECCCGGGHHHHHHHHHHTTCEEEE
T ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 98978222023212221000122332122330
No 266
>>1k92_A Argininosuccinate synthase, argininosuccinate; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} (A:1-183)
Probab=21.33 E-value=53 Score=13.75 Aligned_cols=42 Identities=12% Similarity=0.080 Sum_probs=22.3
Q ss_pred CCCCCCEEEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHCCE-EEEEEEEECCCC
Q ss_conf 987887189998078999999850876798999999851792-999999730688
Q gi|254780936|r 1 MFDPREKIALFIDGANLYASSKALGFDIDYRKLLKAFRSRAI-VIRAYYYTTVVG 54 (182)
Q Consensus 1 m~~~~~rvaIfID~~Nl~~~~~~~~~~~d~~~L~~~l~~~~~-l~~~~~y~~~~~ 54 (182)
|..+.+|+.|.+=|+ +|=..++..+.+.+. +...+...+...
T Consensus 6 ~i~~~~kv~v~~SGG------------~DS~vll~ll~~~~~~~~~~~~~~~~~~ 48 (183)
T 1k92_A 6 HLPVGQRIGIAFSGG------------LDTSAALLWMRQKGAVPYAYTANLGQPD 48 (183)
T ss_dssp SCCTTSEEEEECCSS------------HHHHHHHHHHHHTTCEEEEEEEECCCTT
T ss_pred HCCCCCEEEEEECCC------------CHHHHHHHHHHHCCCEEEEEEEECCCCC
T ss_conf 099998899995898------------1899999999874986999999799985
No 267
>>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Pyrococcus horikoshii OT3} (A:1-129)
Probab=21.19 E-value=54 Score=13.73 Aligned_cols=39 Identities=10% Similarity=0.031 Sum_probs=27.2
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCC
Q ss_conf 115889998386658999999998498899998315776
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVLSDP 149 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~~ 149 (182)
+.-..+|.+||--|=+-++..+++.+..+.++.+..+..
T Consensus 21 ~~~~v~v~~SGG~DS~~~~~ll~~~~~~~~~~~~~~~~~ 59 (129)
T 2e18_A 21 GNNGVVIGISGGVDSATVAYLATKALGKEKVLGLIMPYF 59 (129)
T ss_dssp CTTCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCSS
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 999699978877999999999998457816677621455
No 268
>>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* (A:1-146,A:288-338)
Probab=21.12 E-value=54 Score=13.72 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=23.5
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 2115889998386658999999998498899998
Q gi|254780936|r 110 SEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 110 a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~ 143 (182)
..+||.+||=+|=+-+..+. +|.+.|++|.++-
T Consensus 2 s~~yDViIIGaGpaGl~aA~-~la~~G~~V~iiE 34 (197)
T 1zk7_A 2 EPPVQVAVIGSGGAAMAAAL-KAVEQGAQVTLIE 34 (197)
T ss_dssp CCCCEEEEECCSHHHHHHHH-HHHHTTCEEEEEE
T ss_pred CCCCCEEEECCCHHHHHHHH-HHHHCCCEEEEEE
T ss_conf 98862999888889999999-9985939499995
No 269
>>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} (A:)
Probab=21.03 E-value=54 Score=13.71 Aligned_cols=37 Identities=16% Similarity=0.003 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHH---CCCCEEEEECCCH----HHHHHHHHHHH
Q ss_conf 3299999999942---1158899983866----58999999998
Q gi|254780936|r 98 MDVELAVDAFEQS---EGLEHLVIFSGDG----CFTTLVAALQR 134 (182)
Q Consensus 98 ~Dv~laiD~~~~a---~~~d~~iLvSGD~----Df~pli~~lr~ 134 (182)
.....+.+++..+ ....++.+++|.. +++..+.++-.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g 265 (333)
T 2q1w_A 222 VFVKDLARATVRAVDGVGHGAYHFSSGTDVAIKELYDAVVEAMA 265 (333)
T ss_dssp EEHHHHHHHHHHHHTTCCCEEEECSCSCCEEHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 22131035777643055556540367863449999999999978
No 270
>>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiation, alternative splicing; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* (A:1-158,A:306-356)
Probab=20.89 E-value=55 Score=13.69 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=23.7
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 2115889998386658999999998498899998
Q gi|254780936|r 110 SEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 110 a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~ 143 (182)
..++|++||=+|=+-+..+. .|.+.|.+|.++-
T Consensus 7 ~~~~DViIIGaGpaGl~aA~-~la~~G~~V~viE 39 (209)
T 3dgh_A 7 SYDYDLIVIGGGSAGLACAK-EAVLNGARVACLD 39 (209)
T ss_dssp CCSEEEEEECCSHHHHHHHH-HHHHTTCCEEEEC
T ss_pred CCCCCEEEECCCHHHHHHHH-HHHHCCCEEEEEE
T ss_conf 97888899896889999999-9997889499995
No 271
>>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5; 2.73A {Saccharopolyspora erythraea} (A:675-745)
Probab=20.87 E-value=55 Score=13.69 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=22.5
Q ss_pred EEEEECCCHH-HHHHHHHHHHCCCEEEEEEEEC
Q ss_conf 8999838665-8999999998498899998315
Q gi|254780936|r 115 HLVIFSGDGC-FTTLVAALQRKVKKVTIVSTVL 146 (182)
Q Consensus 115 ~~iLvSGD~D-f~pli~~lr~~Gk~V~v~~~~~ 146 (182)
.-+.+||+.+ ...+.+.++++|.++..+.+..
T Consensus 36 ~~~visG~~~~i~~~~~~l~~~g~~~~~L~v~~ 68 (71)
T 2hg4_A 36 RSVVVAGESGPLDELIAECEAEAHKARRIPVDY 68 (71)
T ss_dssp TEEEEEECTTHHHHHHHHHHHHTCCEEEESCSC
T ss_pred CEEEEECCHHHHHHHHHHHHHCCEEEEECCCCC
T ss_conf 809997889999999999985892189898998
No 272
>>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus HB8} PDB: 2eq7_A* (A:1-136,A:282-331)
Probab=20.74 E-value=55 Score=13.67 Aligned_cols=16 Identities=13% Similarity=0.007 Sum_probs=8.5
Q ss_pred HHHHHHHCCCEEEEEE
Q ss_conf 9988975595697534
Q gi|254780936|r 66 LLDWLHYNGFQVVAKV 81 (182)
Q Consensus 66 ~~~~l~~~g~~v~~~~ 81 (182)
....+...|++++...
T Consensus 95 ~~~~~~~~gV~~i~G~ 110 (186)
T 2yqu_A 95 VEFLFKKNGIARHQGT 110 (186)
T ss_dssp HHHHHHHHTCEEEESC
T ss_pred HHHHHHCCCCCCCEEE
T ss_conf 8988630464210000
No 273
>>1m1n_B Nitrogenase molybdenum-iron protein beta chain; atomic resolution, FEMO cofactor, nitrogen fixation, central nitrogen ligand; HET: HCA CLF CFN; 1.16A {Azotobacter vinelandii} (B:33-63,B:339-522)
Probab=20.71 E-value=55 Score=13.66 Aligned_cols=15 Identities=27% Similarity=0.290 Sum_probs=7.5
Q ss_pred HHHHHHHHCCCEEEE
Q ss_conf 999889755956975
Q gi|254780936|r 65 PLLDWLHYNGFQVVA 79 (182)
Q Consensus 65 ~~~~~l~~~g~~v~~ 79 (182)
.+...|...|.++..
T Consensus 70 ~la~fL~ElGm~vv~ 84 (215)
T 1m1n_B 70 GLVKFLLELGCEPVH 84 (215)
T ss_dssp HHHHHHHHTTCEEEE
T ss_pred HHHHHHHHCCCCCEE
T ss_conf 999999986997349
No 274
>>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* (A:)
Probab=20.63 E-value=55 Score=13.65 Aligned_cols=71 Identities=18% Similarity=0.088 Sum_probs=45.5
Q ss_pred HHHHHHCCCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEEEECCCCC---CCHHHHHHHCCCCEEHHHHHHHHCC
Q ss_conf 999942115889998386--6589999999984988999983157765---4708999852111518997876225
Q gi|254780936|r 105 DAFEQSEGLEHLVIFSGD--GCFTTLVAALQRKVKKVTIVSTVLSDPS---MASDQLRRQADYFMDLAYLKNEIAR 175 (182)
Q Consensus 105 D~~~~a~~~d~~iLvSGD--~Df~pli~~lr~~Gk~V~v~~~~~~~~~---~~S~~L~~~ad~fi~l~~l~~~i~r 175 (182)
|+.+...++|.+.+=-+= .|...+++.+...|+.|++.+-...+++ ..+..|...||.+..|..+=...++
T Consensus 84 ~i~~~~~~~d~I~IDEaQFf~~i~~~~~~~~~~g~~Vi~~GL~~df~~~~F~~~~~Ll~~Ad~i~kl~a~C~~Cg~ 159 (195)
T 1w4r_A 84 DVAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFR 159 (195)
T ss_dssp GGHHHHHTCSEEEESSGGGCTTHHHHHHHHHHTTCEEEEEEESBCTTSSBCTTGGGGGGGCSEEEECCEECTTTCS
T ss_pred HHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEEEEHHCCCCHHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf 8886504664899840356577899999998379649987656044178077899998407869999179589999
No 275
>>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus HB8} (A:1-125,A:290-317)
Probab=20.62 E-value=55 Score=13.65 Aligned_cols=55 Identities=16% Similarity=0.044 Sum_probs=37.1
Q ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHCC
Q ss_conf 999942115889998386658999999998498899998315776547089998521
Q gi|254780936|r 105 DAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQAD 161 (182)
Q Consensus 105 D~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~~~~~~~~S~~L~~~ad 161 (182)
++.+.....|.+++.|.+.--.+.+..+-+.||.|.+-. ...-....++|.+.|.
T Consensus 60 ~~~~~~~~~DvVii~tp~~~h~e~~~~ale~Gk~Vi~EK--P~a~~~e~~~L~~~a~ 114 (153)
T 2ejw_A 60 EPFDLLEADLVVEAMGGVEAPLRLVLPALEAGIPLITAN--KALLAEAWESLRPFAE 114 (153)
T ss_dssp SCCCCTTCSEEEECCCCSHHHHHHHHHHHHTTCCEEECC--HHHHHHSHHHHHHHHH
T ss_pred CHHHHHCCCCCHHCCCCCCCHHHHHHHHHHHHCCEEECC--HHHHHHHHHHHHHHHH
T ss_conf 877863122101102344214778999998407753226--0577768999998653
No 276
>>2dt8_A DEGV family protein; fatty acid binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: PLM; 1.48A {Thermus thermophilus HB8} (A:1-27,A:66-152)
Probab=20.62 E-value=55 Score=13.65 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=5.6
Q ss_pred HHHHHHHHHHCCCEEEEE
Q ss_conf 899999999849889999
Q gi|254780936|r 125 FTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 125 f~pli~~lr~~Gk~V~v~ 142 (182)
|..+.+++.+.|-.|+.+
T Consensus 31 ~~e~f~~l~e~G~~Ii~I 48 (114)
T 2dt8_A 31 FARVYREALEEADHVLSL 48 (114)
T ss_dssp HHHHHHHHTTSCSEEEEE
T ss_pred HHHHHHHHHHCCCEEEEE
T ss_conf 999999987269849997
No 277
>>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transferase; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A (A:1-276)
Probab=20.59 E-value=55 Score=13.65 Aligned_cols=77 Identities=10% Similarity=0.110 Sum_probs=49.5
Q ss_pred HHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 57999889755956975345895378886543565329999999994211588999838665899999999849889999
Q gi|254780936|r 63 LHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 (182)
Q Consensus 63 ~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~ 142 (182)
+..+.+..++.|..+...|+ ...++.++.+ ..+|.+-|-|+|---.|+++.+-+.||.|++-
T Consensus 93 ~~~L~~~~~~~Gi~~~st~~-------------d~~~v~~~~~-----~~v~~~KI~S~~~~n~~LL~~~a~tgkPvils 154 (276)
T 2wqp_A 93 EIKLKEYVESKGXIFISTLF-------------SRAAALRLQR-----XDIPAYKIGSGECNNYPLIKLVASFGKPIILS 154 (276)
T ss_dssp HHHHHHHHHHTTCEEEEEEC-------------SHHHHHHHHH-----HTCSCEEECGGGTTCHHHHHHHHTTCSCEEEE
T ss_pred HHHHHHHHHHCCCCCCCCCC-------------CCCHHHHHCC-----CCCCHHCCCCCCCCCHHHHHHHHHCCCCEEEC
T ss_conf 67899987512443333456-------------4413222013-----36564000330013338876567506740102
Q ss_pred EEECCCCCCCHHHHHHHCCC
Q ss_conf 83157765470899985211
Q gi|254780936|r 143 STVLSDPSMASDQLRRQADY 162 (182)
Q Consensus 143 ~~~~~~~~~~S~~L~~~ad~ 162 (182)
. ...+-.++.++++.
T Consensus 155 t-----G~~t~~ei~~Av~~ 169 (276)
T 2wqp_A 155 T-----GXNSIESIKKSVEI 169 (276)
T ss_dssp C-----TTCCHHHHHHHHHH
T ss_pred C-----CCCCCCCCCCEEEE
T ss_conf 4-----43221010000000
No 278
>>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} (A:1-139,A:282-332)
Probab=20.33 E-value=56 Score=13.62 Aligned_cols=10 Identities=30% Similarity=0.395 Sum_probs=4.8
Q ss_pred HHHCCCEEEE
Q ss_conf 9755956975
Q gi|254780936|r 70 LHYNGFQVVA 79 (182)
Q Consensus 70 l~~~g~~v~~ 79 (182)
+...|.+++.
T Consensus 103 ~~~~~v~~~~ 112 (190)
T 1ges_A 103 LGKNNVDVIK 112 (190)
T ss_dssp HHHTTCEEEE
T ss_pred HHCCCCEEEE
T ss_conf 6517938998
No 279
>>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} (A:1-156,A:302-352)
Probab=20.32 E-value=56 Score=13.61 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=20.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 115889998386658999999998498899998
Q gi|254780936|r 111 EGLEHLVIFSGDGCFTTLVAALQRKVKKVTIVS 143 (182)
Q Consensus 111 ~~~d~~iLvSGD~Df~pli~~lr~~Gk~V~v~~ 143 (182)
.+||.+||=+|=+-+..++. |.+.|.+|.++-
T Consensus 10 ~~yDviIIGaGpaGl~aA~~-la~~G~~V~iiE 41 (207)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARR-AASYGAKTLLVE 41 (207)
T ss_dssp CEEEEEEECCSHHHHHHHHH-HHHTSCCEEEEE
T ss_pred CCCCEEEECCCHHHHHHHHH-HHHCCCEEEEEE
T ss_conf 73678998988899999999-996869399993
No 280
>>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} (A:)
Probab=20.19 E-value=56 Score=13.60 Aligned_cols=95 Identities=19% Similarity=0.257 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH-CCCCEEEE--ECCCHHHHHHHHHHHHCCC-
Q ss_conf 7579998897559569753458953788865435653299999999942-11588999--8386658999999998498-
Q gi|254780936|r 62 PLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQS-EGLEHLVI--FSGDGCFTTLVAALQRKVK- 137 (182)
Q Consensus 62 ~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~kk~~Dv~laiD~~~~a-~~~d~~iL--vSGD~Df~pli~~lr~~Gk- 137 (182)
........|...|+++.... .|..-|++.+... +++|.+++ .--+-|=..+++++|+.+.
T Consensus 48 ~~~~l~~~L~~~g~~v~~~a----------------~~g~eAl~~~~~~~~~~dliilD~~mP~~dG~~~~~~ir~~~~~ 111 (157)
T 3hzh_A 48 TVKQLTQIFTSEGFNIIDTA----------------ADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKN 111 (157)
T ss_dssp HHHHHHHHHHHTTCEEEEEE----------------SSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCEEEEEE----------------CCHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCC
T ss_conf 99999999998799899998----------------99999999999569990299845579998759999999974789
Q ss_pred -EEEEEEEECCCCCCCHHHHHHHCCCCE----EHHHHHHHH
Q ss_conf -899998315776547089998521115----189978762
Q gi|254780936|r 138 -KVTIVSTVLSDPSMASDQLRRQADYFM----DLAYLKNEI 173 (182)
Q Consensus 138 -~V~v~~~~~~~~~~~S~~L~~~ad~fi----~l~~l~~~i 173 (182)
.|++++. .+......+.+..-++.|+ ....+...+
T Consensus 112 ~piI~lt~-~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i 151 (157)
T 3hzh_A 112 ARVIMISA-LGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRV 151 (157)
T ss_dssp CCEEEEES-CCCHHHHHHHHHTTCSEEEESSCCHHHHHHHH
T ss_pred CEEEEEEC-CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHH
T ss_conf 70899834-79999999999859988998989999999999
No 281
>>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} (A:)
Probab=20.07 E-value=57 Score=13.58 Aligned_cols=31 Identities=6% Similarity=0.115 Sum_probs=26.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 8999838665899999999849889999831
Q gi|254780936|r 115 HLVIFSGDGCFTTLVAALQRKVKKVTIVSTV 145 (182)
Q Consensus 115 ~~iLvSGD~Df~pli~~lr~~Gk~V~v~~~~ 145 (182)
..|.++.|.|+..+++.+++.|...-+..+.
T Consensus 64 D~v~l~sd~Dl~~A~~~~~~~~~~lri~v~~ 94 (101)
T 1wj6_A 64 EEVSINSQGEYEEALKMAVKQGNQLQMQVHE 94 (101)
T ss_dssp CEECCCSHHHHHHHHHHHHHHTSEEEEECCB
T ss_pred CEEEECCHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 7888657899999999987179889999985
Done!