RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780936|ref|YP_003065349.1| hypothetical protein CLIBASIA_04175 [Candidatus Liberibacter asiaticus str. psy62] (182 letters) >2qip_A Protein of unknown function VPA0982; APC85975, structural genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus rimd 2210633} (A:) Length = 165 Score = 120 bits (303), Expect = 9e-29 Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 13/168 (7%) Query: 3 DPREKIALFIDGANLYASSK-ALGFDIDYRKLLKAFRSRAIVIRAYYYTTVVGDPEQQFS 61 D +EKIA+ +D N+Y + + A + DY + V+ A Y DP+Q Sbjct: 7 DHKEKIAILVDVQNVYYTCREAYRSNFDYNQFWYVATQEKEVVSAKAYAIASNDPKQ--- 63 Query: 62 PLHPLLDWLHYNGFQVVAKVAKEFTENCGRKRVKSSMDVELAVDAFEQSEGLEHLVIFSG 121 L GF+V K + + K DV + +DA E + ++ +++ SG Sbjct: 64 --RQFHHILRGVGFEVXLKPYIQRRDGSA----KGDWDVGITLDAIEIAPDVDRVILVSG 117 Query: 122 DGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDLAYL 169 DG F+ LV +Q++ K V P + S L AD F+ + Sbjct: 118 DGDFSLLVERIQQRYNKKVT---VYGVPRLTSQTLIDCADNFVAIDDD 162 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 28.7 bits (64), Expect = 0.51 Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 10/67 (14%) Query: 121 GDGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQL--RRQ---ADYFMDLAYLKNEIAR 175 G G TT A R+ ++ + QL R +L LK E Sbjct: 3 GKGILTT---A--REHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEE 57 Query: 176 DPDEDKK 182 P ED+ Sbjct: 58 IPSEDQN 64 >1dqn_A Guanine phosphoribosyltransferase; protein-inhibitor complex, Mg IONS, pyrophosphate, transition state analogue; HET: IMU; 1.75A {Giardia lamblia} (A:1-59,A:176-230) Length = 114 Score = 26.5 bits (58), Expect = 2.1 Identities = 11/35 (31%), Positives = 22/35 (62%) Query: 132 LQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL 166 L+ +VKK +++T ++A+D RR +Y+ D+ Sbjct: 25 LESEVKKFHLLATFEECKALAADTARRMNEYYKDV 59 >1x7f_A Outer surface protein; structural genomics, unknown function, protein structure initiative, MCSG, PSI; 2.30A {Bacillus cereus atcc 14579} (A:1-267) Length = 267 Score = 25.8 bits (57), Expect = 3.5 Identities = 5/32 (15%), Positives = 12/32 (37%) Query: 54 GDPEQQFSPLHPLLDWLHYNGFQVVAKVAKEF 85 E+ + +++ N +V+ VA Sbjct: 67 RPKEEIVAEFKEIINHAKDNNMEVILDVAPAV 98 >1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} (A:1-163) Length = 163 Score = 25.6 bits (55), Expect = 4.1 Identities = 6/62 (9%), Positives = 15/62 (24%), Gaps = 4/62 (6%) Query: 118 IFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDLAYLKNEIARDP 177 G T + L+ K ++ +D + + E+ Sbjct: 13 YVQGKNVITKIANYLEGIGNKTVVI----ADEIVWKIAGHTIVNELKKGNIAAEEVVFSG 68 Query: 178 DE 179 + Sbjct: 69 EA 70 >1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} (I:) Length = 182 Score = 25.2 bits (55), Expect = 5.2 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 132 LQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDL-AYLKNEIARDPDEDKK 182 L+ K K+ + +S +M L + MDL A LK D +++K Sbjct: 102 LRGKFKRPPLRRVRMSADAMLRALLGSKHKVNMDLRANLKQVKKEDTEKEKD 153 >3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} (A:1-272,A:372-395) Length = 296 Score = 25.1 bits (54), Expect = 5.5 Identities = 9/17 (52%), Positives = 12/17 (70%) Query: 26 FDIDYRKLLKAFRSRAI 42 D++Y KL+K F S AI Sbjct: 19 GDVNYDKLIKDFGSHAI 35 >1kq3_A Glycerol dehydrogenase; zinc, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.50A {Thermotoga maritima} (A:20-169) Length = 150 Score = 25.0 bits (54), Expect = 6.3 Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 4/64 (6%) Query: 118 IFSGDGCFTTLVAALQRKVKKVTIVSTVLSDPSMASDQLRRQADYFMDLAYLKNEIARDP 177 G G L L R ++ +V D + + L + +I Sbjct: 4 YVQGAGAINILEEELSRFGERAFVV----IDDFVDKNVLGENFFSSFTKVRVNKQIFGGE 59 Query: 178 DEDK 181 D+ Sbjct: 60 CSDE 63 >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} (A:1-13,A:120-295) Length = 189 Score = 24.7 bits (53), Expect = 7.0 Identities = 12/91 (13%), Positives = 23/91 (25%), Gaps = 10/91 (10%) Query: 55 DPEQQFSPLHPLLDWLHYNGFQVVAKVAKEF---TENCGRKRVKSSMDVELAVDAFEQSE 111 + + H + + K T K ++ + + Sbjct: 18 NHVYYQNLYHNVR-------YLDKENRLKSILPCTPLAIVKILEFLKIYNNLLPEGNRLY 70 Query: 112 GLEHLVIFSGDGCFTTLVAALQRKVKKVTIV 142 G + +VI + L A L V V Sbjct: 71 GKKCIVINRSEIVGRPLAALLANDGATVYSV 101 >1f45_B Interleukin-12 alpha chain; cytokine, cytokine/cytpkine complex; HET: NAG MAN; 2.80A {Homo sapiens} (B:) Length = 197 Score = 24.9 bits (54), Expect = 7.8 Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 1/19 (5%) Query: 32 KLLKAFRSRAIVI-RAYYY 49 LL AFR RA+ I R Y Sbjct: 175 ILLHAFRIRAVTIDRVMSY 193 >1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, anticodon recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} (A:50-304,A:406-437) Length = 287 Score = 24.7 bits (53), Expect = 8.2 Identities = 8/15 (53%), Positives = 9/15 (60%) Query: 28 IDYRKLLKAFRSRAI 42 IDY KL+ F S I Sbjct: 2 IDYDKLIVRFGSSKI 16 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.322 0.137 0.393 Gapped Lambda K H 0.267 0.0493 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,458,393 Number of extensions: 63040 Number of successful extensions: 204 Number of sequences better than 10.0: 1 Number of HSP's gapped: 200 Number of HSP's successfully gapped: 20 Length of query: 182 Length of database: 4,956,049 Length adjustment: 83 Effective length of query: 99 Effective length of database: 2,150,234 Effective search space: 212873166 Effective search space used: 212873166 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 52 (24.4 bits)