HHsearch alignment for GI: 254780937 and conserved domain: PRK01099

>PRK01099 rpoK DNA-directed RNA polymerase subunit K; Provisional.

Probab=96.70  E-value=0.0023  Score=39.31  Aligned_cols=46  Identities=22%  Similarity=0.460  Sum_probs=39.0

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCC-HHHHHHHHHCCCCCH
Q ss_conf             8999999999999998578877677446--854-115675654058799
Q gi|254780937|r   15 NRFLLVLLASHRTRHLSQGAKPTVDVGK--DKN-TVVALREIASGTLSP   60 (122)
Q Consensus        15 nrf~LVllAa~RArql~~G~~~~v~~~n--dK~-~ViALREIa~gki~~   60 (122)
T Consensus        32 TKYEkarIiG~RA~Qi~~GA~p~I~i~~~~~~D~~~IA~~EL~qkkIPf   80 (106)
T PRK01099         32 TKYEIARIIGARALQLAMGAQPLIDIRELGSTDPVLIAEEELRRGLLDF   80 (106)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCE
T ss_conf             3889999998999998679996686787888688999999998399977