HHsearch alignment for GI: 254780937 and conserved domain: PRK02128
>PRK02128 DNA-directed RNA polymerase subunit omega; Provisional.
Probab=99.97 E-value=2.8e-31 Score=196.49 Aligned_cols=65 Identities=51% Similarity=0.793 Sum_probs=62.6
Q ss_pred CCEEEHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 960008998512878999999999999998578877677446854115675654058799999999
Q gi|254780937|r 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEED 66 (122)
Q Consensus 1 MARvTvEdcl~kv~nrf~LVllAa~RArql~~G~~~~v~~~ndK~~ViALREIa~gki~~~~l~e~ 66 (122)
T Consensus 1 MARvTVEDCl~~i~NRF~Lvl~A~~Rarql~~G~~~~ve-~~dK~tViALREIa~g~v~~e~L~e~ 65 (67)
T PRK02128 1 MARITVEDCLKQIPNRFELALAATYRARQLAQGHTPKIE-SRDKPTVVALREIAAGQVGLEMLKKV 65 (67)
T ss_pred CCEEEHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHHCCCCHHHHHHC
T ss_conf 982539998872798999999999999999669988656-68986221158878179799998417