HHsearch alignment for GI: 254780937 and conserved domain: PRK02544
>PRK02544 DNA-directed RNA polymerase subunit omega; Provisional.
Probab=99.87 E-value=7e-23 Score=149.20 Aligned_cols=62 Identities=34% Similarity=0.553 Sum_probs=60.0
Q ss_pred CCEEEHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHH
Q ss_conf 96000899851287899999999999999857887767744685411567565405879999
Q gi|254780937|r 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDD 62 (122)
Q Consensus 1 MARvTvEdcl~kv~nrf~LVllAa~RArql~~G~~~~v~~~ndK~~ViALREIa~gki~~~~ 62 (122)
T Consensus 1 Ml~PSId~Ll~KVdSrYsLVilAaKRARqL~~Ga~Pt~~~ds~K~t~~ALeEIaaG~V~idP 62 (98)
T PRK02544 1 MLKPSIDTLLDKVPSKYSLVILQAKRAHELEAGATPTQEFKSVKSTLQALEEIESGNVVIHP 62 (98)
T ss_pred CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCEEECC
T ss_conf 98677999998558701568899989999865898765445765799999999839814489