HHsearch alignment for GI: 254780937 and conserved domain: PRK02544

>PRK02544 DNA-directed RNA polymerase subunit omega; Provisional.
Probab=99.87  E-value=7e-23  Score=149.20  Aligned_cols=62  Identities=34%  Similarity=0.553  Sum_probs=60.0

Q ss_pred             CCEEEHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHH
Q ss_conf             96000899851287899999999999999857887767744685411567565405879999
Q gi|254780937|r    1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDD   62 (122)
Q Consensus         1 MARvTvEdcl~kv~nrf~LVllAa~RArql~~G~~~~v~~~ndK~~ViALREIa~gki~~~~   62 (122)
T Consensus         1 Ml~PSId~Ll~KVdSrYsLVilAaKRARqL~~Ga~Pt~~~ds~K~t~~ALeEIaaG~V~idP   62 (98)
T PRK02544          1 MLKPSIDTLLDKVPSKYSLVILQAKRAHELEAGATPTQEFKSVKSTLQALEEIESGNVVIHP   62 (98)
T ss_pred             CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCEEECC
T ss_conf             98677999998558701568899989999865898765445765799999999839814489