HHsearch alignment for GI: 254780937 and conserved domain: PRK02756
>PRK02756 DNA-directed RNA polymerase subunit omega; Provisional.
Probab=100.00 E-value=7e-45 Score=272.99 Aligned_cols=122 Identities=60% Similarity=0.864 Sum_probs=112.3
Q ss_pred CCEEEHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 96000899851287899999999999999857887767744685411567565405879999999999998411646657
Q gi|254780937|r 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEEDFIHSLQKHVEIDEP 80 (122)
Q Consensus 1 MARvTvEdcl~kv~nrf~LVllAa~RArql~~G~~~~v~~~ndK~~ViALREIa~gki~~~~l~e~~I~~lq~~~e~~E~ 80 (122)
T Consensus 1 MARvTVEDCl~kv~NRF~LVllAs~RArql~~G~~~~v~~dnDK~tViALREIA~~~i~~~~L~e~li~slQ~~~e~de~ 80 (128)
T PRK02756 1 MARVTVEDCIDKVPNRFELVLLAAHRARQISAGAPLTVDRDNDKNPVVALREIADETISPEDLKEDLIHSLQKHVEVDEP 80 (128)
T ss_pred CCEEEHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 97233999887178778999999999999867999764866886612016876507768999999999997347888884
Q ss_pred CHHHHHHHHH-----CCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 8566676530-----25101101011498887865531168400279
Q gi|254780937|r 81 DSPTENSDFS-----WHKPEALSFGQMSEGDLLEGINNIVTPDKRDD 122 (122)
Q Consensus 81 e~~~~~~~~~-----~~~~~~~~~~~~se~e~~~~~~~~i~p~k~~d 122 (122)
T Consensus 81 e~d~~~~~~~~~~~~~~~~~~~~~d~msEe~lLr~l~~~~~~~~~d~ 127 (128)
T PRK02756 81 EPDTVPLLSSAGAAEDAEDDDVAFDRMSEEELLRGLEGLVPPEKDDD 127 (128)
T ss_pred CHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHHHHHHCCCCCCCCCC
T ss_conf 15667651467777766644300100689999999873499765678