HHsearch alignment for GI: 254780937 and conserved domain: PRK02950
>PRK02950 DNA-directed RNA polymerase subunit omega; Provisional.
Probab=99.70 E-value=5.7e-18 Score=121.53 Aligned_cols=62 Identities=31% Similarity=0.586 Sum_probs=54.2
Q ss_pred EEEHHHHHCCCCCHHHHHHHHHHHHHHHHC-----------CCCCCCCCCC-CCCHHHHHHHHHCCCCCHHHHH
Q ss_conf 000899851287899999999999999857-----------8877677446-8541156756540587999999
Q gi|254780937|r 3 RTTVEDCIDKVDNRFLLVLLASHRTRHLSQ-----------GAKPTVDVGK-DKNTVVALREIASGTLSPDDLE 64 (122)
Q Consensus 3 RvTvEdcl~kv~nrf~LVllAa~RArql~~-----------G~~~~v~~~n-dK~~ViALREIa~gki~~~~l~ 64 (122)
T Consensus 14 ~P~id~Ll~kvdsky~LVi~aakRARqin~Y~~qL~eGl~e~vgPlV~~~~~~KPLsIAlrEI~eg~l~~e~~e 87 (89)
T PRK02950 14 NPPIDELLDRVDSKYALVIYAAKRARQINDYYNQLGEGLLEYVGPLVEPGLQEKPLSIALREINADLLTAEHTE 87 (89)
T ss_pred CCCHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEHHHHHHCCCCCCCCCC
T ss_conf 88899999854871100468788898888888886011003478855677788861113999876886441356