HHsearch alignment for GI: 254780937 and conserved domain: PRK03853
>PRK03853 DNA-directed RNA polymerase subunit omega; Provisional.
Probab=99.46 E-value=3.5e-14 Score=100.23 Aligned_cols=59 Identities=41% Similarity=0.625 Sum_probs=52.4
Q ss_pred HHHHCCCCC-HHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCHHHHHHHHHCCCCCHHHHHH
Q ss_conf 998512878-99999999999999857887767744--685411567565405879999999
Q gi|254780937|r 7 EDCIDKVDN-RFLLVLLASHRTRHLSQGAKPTVDVG--KDKNTVVALREIASGTLSPDDLEE 65 (122)
Q Consensus 7 Edcl~kv~n-rf~LVllAa~RArql~~G~~~~v~~~--ndK~~ViALREIa~gki~~~~l~e 65 (122)
T Consensus 10 aKALe~v~~DRY~Ls~~vakRa~qLanGA~PLv~~d~~k~K~tdIAL~EIAeGKI~le~i~e 71 (73)
T PRK03853 10 AKALKNVGNDRYKLSLLVFKRAEQLANGAKPLVDMDPKKHKLADIALREIAEGKIDLERIVE 71 (73)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEC
T ss_conf 99998728608999999999999986688642246845554899999999817520134201