HHsearch alignment for GI: 254780937 and conserved domain: PRK04474
>PRK04474 DNA-directed RNA polymerase subunit omega; Provisional.
Probab=99.97 E-value=1.2e-32 Score=204.13 Aligned_cols=65 Identities=49% Similarity=0.796 Sum_probs=61.8
Q ss_pred CCEEEHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCHHHHHHHHHCCCCCHHHHHH
Q ss_conf 9600089985128789999999999999985788776774--4685411567565405879999999
Q gi|254780937|r 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV--GKDKNTVVALREIASGTLSPDDLEE 65 (122)
Q Consensus 1 MARvTvEdcl~kv~nrf~LVllAa~RArql~~G~~~~v~~--~ndK~~ViALREIa~gki~~~~l~e 65 (122)
T Consensus 1 MARvTVEDCl~~i~NRF~Lvl~A~~RArql~~G~~p~v~~~~~~DKptViALREIa~g~v~~~~l~~ 67 (99)
T PRK04474 1 MARITVEDCLEVVNNRFELVMMASKRARQLANGVQPLIENADASDKPTVMALREIAARRIDNALIDE 67 (99)
T ss_pred CCEEEHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHHHHCCCCHHHHHH
T ss_conf 9714399988617888899999999999986699970377544798723104887747678999989