HHsearch alignment for GI: 254780937 and conserved domain: PRK04474

>PRK04474 DNA-directed RNA polymerase subunit omega; Provisional.
Probab=99.97  E-value=1.2e-32  Score=204.13  Aligned_cols=65  Identities=49%  Similarity=0.796  Sum_probs=61.8

Q ss_pred             CCEEEHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCHHHHHHHHHCCCCCHHHHHH
Q ss_conf             9600089985128789999999999999985788776774--4685411567565405879999999
Q gi|254780937|r    1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV--GKDKNTVVALREIASGTLSPDDLEE   65 (122)
Q Consensus         1 MARvTvEdcl~kv~nrf~LVllAa~RArql~~G~~~~v~~--~ndK~~ViALREIa~gki~~~~l~e   65 (122)
T Consensus         1 MARvTVEDCl~~i~NRF~Lvl~A~~RArql~~G~~p~v~~~~~~DKptViALREIa~g~v~~~~l~~   67 (99)
T PRK04474          1 MARITVEDCLEVVNNRFELVMMASKRARQLANGVQPLIENADASDKPTVMALREIAARRIDNALIDE   67 (99)
T ss_pred             CCEEEHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHHHHCCCCHHHHHH
T ss_conf             9714399988617888899999999999986699970377544798723104887747678999989