HHsearch alignment of GI: 254780937 and MMDB domain: 1qkl_A_

>1qkl_A (A:) RPB6, DNA-directed RNA polymerase II 14.4 KD polypeptide; transcription; NMR {Homo sapiens}

Probab=97.10  E-value=0.00078  Score=41.56  Aligned_cols=47  Identities=11%  Similarity=0.244  Sum_probs=42.5

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHHHCCCCCH
Q ss_conf             7899999999999999857887767744685411-5675654058799
Q gi|254780937|r   14 DNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTLSP   60 (122)
Q Consensus        14 ~nrf~LVllAa~RArql~~G~~~~v~~~ndK~~V-iALREIa~gki~~   60 (122)
                      =.||+..-+-.-||.||+.|++++|+..+.-.|+ ||..|...|+|.+
T Consensus        57 lTkyE~ARilG~RAlQis~gAp~~v~~~~~~dpl~IA~~El~~~~iP~  104 (127)
T 1qkl_A           57 MTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPI  104 (127)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSCCSSSCSSSSCSSSHHHHHHHHHTCCCE
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHCCCCCE
T ss_conf             219899999999999985699844668888799999999998399877