HHsearch alignment of GI: 254780937 and MMDB domain: 2a6h_E_1-77
>2a6h_E (E:1-77) RNA polymerase omega chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus}
Probab=99.84 E-value=1.6e-21 Score=141.25 Aligned_cols=61 Identities=18% Similarity=0.322 Sum_probs=57.0
Q ss_pred CCEEEHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC---------------CCCCCHHHHHHHHHCCCCCHH
Q ss_conf 9600089985128789999999999999985788776774---------------468541156756540587999
Q gi|254780937|r 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV---------------GKDKNTVVALREIASGTLSPD 61 (122)
Q Consensus 1 MARvTvEdcl~kv~nrf~LVllAa~RArql~~G~~~~v~~---------------~ndK~~ViALREIa~gki~~~ 61 (122)
|+|.++++|++||+|||.||++||+|||||++|++|+++. +++|++++||+|||+|+|+++
T Consensus 1 M~~psid~ll~kv~srY~Lvi~aAKRArql~~g~~~~~~~~~~~~~~~~~~~~~~~~~Kpv~~Al~EIa~gkv~~~ 76 (77)
T 2a6h_E 1 MAEPGIDKLFGMVDSKYRLTVVVAKRAQQLLRHGFKNTVLEPEERPKMQTLEGLFDDPNAETWAMKELLTGRLVFG 76 (77)
T ss_dssp -CCTTHHHHHHHSSSHHHHHHHHHHHHHHHHHTCTTCCSCCSSSCCCCSSSSGGGTSSCSHHHHHHHHTTTCCEEE
T ss_pred CCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCEEEC
T ss_conf 9863577886224442244135389899998716985636965625564025567997588999999873735533