HHsearch alignment of GI: 254780937 and MMDB domain: 2a6h_E_1-77

>2a6h_E (E:1-77) RNA polymerase omega chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus}
Probab=99.84  E-value=1.6e-21  Score=141.25  Aligned_cols=61  Identities=18%  Similarity=0.322  Sum_probs=57.0

Q ss_pred             CCEEEHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC---------------CCCCCHHHHHHHHHCCCCCHH
Q ss_conf             9600089985128789999999999999985788776774---------------468541156756540587999
Q gi|254780937|r    1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV---------------GKDKNTVVALREIASGTLSPD   61 (122)
Q Consensus         1 MARvTvEdcl~kv~nrf~LVllAa~RArql~~G~~~~v~~---------------~ndK~~ViALREIa~gki~~~   61 (122)
                      |+|.++++|++||+|||.||++||+|||||++|++|+++.               +++|++++||+|||+|+|+++
T Consensus         1 M~~psid~ll~kv~srY~Lvi~aAKRArql~~g~~~~~~~~~~~~~~~~~~~~~~~~~Kpv~~Al~EIa~gkv~~~   76 (77)
T 2a6h_E            1 MAEPGIDKLFGMVDSKYRLTVVVAKRAQQLLRHGFKNTVLEPEERPKMQTLEGLFDDPNAETWAMKELLTGRLVFG   76 (77)
T ss_dssp             -CCTTHHHHHHHSSSHHHHHHHHHHHHHHHHHTCTTCCSCCSSSCCCCSSSSGGGTSSCSHHHHHHHHTTTCCEEE
T ss_pred             CCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCEEEC
T ss_conf             9863577886224442244135389899998716985636965625564025567997588999999873735533