HHsearch results for GI: 254780937 and protein with PDBid: 2a6h_E
>2a6h_E RNA polymerase omega chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.143.1.1 PDB: 1smy_E* 1zyr_E* 1iw7_E* 2a69_E* 2a6e_E 2a68_E* 2be5_E* 2cw0_E 3dxj_E* 2o5i_E 2o5j_E* 2ppb_E* 3eql_E* 1ynj_K* 1i6v_E* 1l9u_E 1l9z_E 1hqm_E* 1ynn_K*
Probab=96.72 E-value=0.0029 Score=37.49 Aligned_cols=60 Identities=27% Similarity=0.464 Sum_probs=45.0
Q ss_pred CCEEEHHHHHCCCCCHHHHHHHHHHHHHH-HHCCCCCC-CCCC------------CCCCHH-HHHHHHHCCCCCH
Q ss_conf 96000899851287899999999999999-85788776-7744------------685411-5675654058799
Q gi|254780937|r 1 MARTTVEDCIDKVDNRFLLVLLASHRTRH-LSQGAKPT-VDVG------------KDKNTV-VALREIASGTLSP 60 (122)
Q Consensus 1 MARvTvEdcl~kv~nrf~LVllAa~RArq-l~~G~~~~-v~~~------------ndK~~V-iALREIa~gki~~ 60 (122)
||---+.-.+.-.+|||.|.++.++||-| |.+|.+-+ ++.+ .|-|+| +|.+|..-|++..
T Consensus 1 MAe~g~DtLl~ltDSkYrLsvvvakRA~QlLr~g~~ntvL~p~e~p~~~tleg~~~dpN~vt~AMkEL~tGrL~~ 75 (99)
T 2a6h_E 1 MAEPGIDKLFGMVDSKYRLTVVVAKRAQQLLRHGFKNTVLEPEERPKMQTLEGLFDDPNAETWAMKELLTGRLVF 75 (99)
T ss_dssp -CCTTHHHHHHHSSSHHHHHHHHHHHHHHHHHTCTTCCSCCSSSCCCCSSSSGGGTSSCSHHHHHHHHTTTCCEE
T ss_pred CCCCCHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCEEE
T ss_conf 986247788740444235522538989999871798564796662456402455789747899999987274553