BLAST/PSIBLAST alignment of GI: 254780937 and GI: 159184585 at iteration 1

>gi|159184585|ref|NP_354052.2| DNA-directed RNA polymerase subunit omega [Agrobacterium tumefaciens str. C58] Length = 129
>gi|23822105|sp|Q8UGK8|RPOZ_AGRT5 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; AltName: Full=RNA polymerase omega subunit; AltName: Full=Transcriptase subunit omega Length = 129
>gi|159139887|gb|AAK86837.2| DNA-directed RNA polymerase omega subunit [Agrobacterium tumefaciens str. C58] Length = 129

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/130 (62%), Positives = 93/130 (71%), Gaps = 10/130 (7%)

Query: 1   MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
           MAR TVEDCIDKVDNRF LVLLASHR R +SQG+  TVD   DKN VVALREIA  TLSP
Sbjct: 1   MARVTVEDCIDKVDNRFELVLLASHRARQISQGSSITVDRDNDKNPVVALREIADETLSP 60

Query: 61  DDLEEDFIHSLQKHVEIDEPD--------SPTENSDFSWHKPEALSFGQMSEGDLLEGIN 112
           DDL+ED IHSLQKHVE+DEP+        S  +  D    +PE ++F QMSE +LL GI 
Sbjct: 61  DDLKEDLIHSLQKHVEVDEPEPDPVTLAASAADGEDDD--QPETVTFDQMSEEELLAGIE 118

Query: 113 NIVTPDKRDD 122
            +V P+K DD
Sbjct: 119 GLVPPEKNDD 128