BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780937|ref|YP_003065350.1| DNA-directed RNA polymerase
subunit omega [Candidatus Liberibacter asiaticus str. psy62]
(122 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254780937|ref|YP_003065350.1| DNA-directed RNA polymerase subunit omega [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040614|gb|ACT57410.1| DNA-directed RNA polymerase subunit omega [Candidatus Liberibacter
asiaticus str. psy62]
Length = 122
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP
Sbjct: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNIVTPDKR 120
DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNIVTPDKR
Sbjct: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNIVTPDKR 120
Query: 121 DD 122
DD
Sbjct: 121 DD 122
>gi|159184585|ref|NP_354052.2| DNA-directed RNA polymerase subunit omega [Agrobacterium
tumefaciens str. C58]
gi|23822105|sp|Q8UGK8|RPOZ_AGRT5 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|159139887|gb|AAK86837.2| DNA-directed RNA polymerase omega subunit [Agrobacterium
tumefaciens str. C58]
Length = 129
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 79/128 (61%), Positives = 91/128 (71%), Gaps = 6/128 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLASHR R +SQG+ TVD DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCIDKVDNRFELVLLASHRARQISQGSSITVDRDNDKNPVVALREIADETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSP------TENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
DDL+ED IHSLQKHVE+DEP+ + +PE ++F QMSE +LL GI +
Sbjct: 61 DDLKEDLIHSLQKHVEVDEPEPDPVTLAASAADGEDDDQPETVTFDQMSEEELLAGIEGL 120
Query: 115 VTPDKRDD 122
V P+K DD
Sbjct: 121 VPPEKNDD 128
>gi|315122350|ref|YP_004062839.1| DNA-directed RNA polymerase subunit omega [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495752|gb|ADR52351.1| DNA-directed RNA polymerase subunit omega [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 126
Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 94/124 (75%), Positives = 108/124 (87%), Gaps = 4/124 (3%)
Query: 3 RTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDD 62
R TVEDCIDKV+NRF LVLLAS+R RH+SQG+ PTV+VG DKNTV++LREIASG LSPDD
Sbjct: 2 RITVEDCIDKVENRFELVLLASYRARHISQGSPPTVEVGNDKNTVISLREIASGALSPDD 61
Query: 63 LEEDFIHSLQKHVEIDEPDSPTENSDFSWH----KPEALSFGQMSEGDLLEGINNIVTPD 118
LEEDFIHSLQ+HVE+DEPD+P E+SD + KPE+LSF QMSEGDLLEGI+NIV PD
Sbjct: 62 LEEDFIHSLQRHVEVDEPDTPVEDSDLNRDFPWNKPESLSFRQMSEGDLLEGIDNIVVPD 121
Query: 119 KRDD 122
KRDD
Sbjct: 122 KRDD 125
>gi|325292408|ref|YP_004278272.1| DNA-directed RNA polymerase subunit omega [Agrobacterium sp. H13-3]
gi|325060261|gb|ADY63952.1| DNA-directed RNA polymerase subunit omega [Agrobacterium sp. H13-3]
Length = 130
Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 78/129 (60%), Positives = 89/129 (68%), Gaps = 7/129 (5%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLASHR R +SQG+ TVD DKN VVALREIA LSP
Sbjct: 1 MARVTVEDCIDKVDNRFELVLLASHRARQISQGSSITVDRDNDKNPVVALREIADEMLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSP-------TENSDFSWHKPEALSFGQMSEGDLLEGINN 113
DDL+ED IHSLQKHVE+DEP+ +PE ++F QMSE +LL GI
Sbjct: 61 DDLKEDLIHSLQKHVEVDEPEPDPVTLAASATADGEEDDQPETVTFDQMSEEELLAGIEG 120
Query: 114 IVTPDKRDD 122
+V P+K DD
Sbjct: 121 LVPPEKNDD 129
>gi|260462330|ref|ZP_05810538.1| DNA-directed RNA polymerase, omega subunit [Mesorhizobium
opportunistum WSM2075]
gi|259031824|gb|EEW33092.1| DNA-directed RNA polymerase, omega subunit [Mesorhizobium
opportunistum WSM2075]
Length = 133
Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats.
Identities = 76/132 (57%), Positives = 91/132 (68%), Gaps = 10/132 (7%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA HR R +SQGA+ TV DKN V+ALREIA TLSP
Sbjct: 1 MARVTVEDCIDKVDNRFELVLLAGHRARQISQGAQITVPRDNDKNPVIALREIADETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTE----------NSDFSWHKPEALSFGQMSEGDLLEG 110
DDL+ED IHSLQKHVE+DEP++ E + + E ++F +M+E DLL G
Sbjct: 61 DDLKEDLIHSLQKHVEVDEPEADGEVIADQTGGAVAAADTDDAEENVTFDRMTEEDLLAG 120
Query: 111 INNIVTPDKRDD 122
I +V P+K DD
Sbjct: 121 IEGLVPPEKSDD 132
>gi|319408277|emb|CBI81930.1| RNA polymerase omega subunit [Bartonella schoenbuchensis R1]
Length = 132
Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats.
Identities = 77/131 (58%), Positives = 91/131 (69%), Gaps = 9/131 (6%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA HR R +SQGA+ TVD DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCIDKVDNRFELVLLAGHRARQISQGAQITVDRDNDKNPVVALREIADETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDS---------PTENSDFSWHKPEALSFGQMSEGDLLEGI 111
DL+ED IHSLQKHVE+DEP++ +E++ + + E SF +SE LL GI
Sbjct: 61 ADLKEDLIHSLQKHVEVDEPETVNEFISHSSESESAFGTSQEEEKCSFDSISEEGLLAGI 120
Query: 112 NNIVTPDKRDD 122
+V P+K DD
Sbjct: 121 EGLVVPEKNDD 131
>gi|319784511|ref|YP_004143987.1| DNA-directed RNA polymerase, omega subunit [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317170399|gb|ADV13937.1| DNA-directed RNA polymerase, omega subunit [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 133
Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats.
Identities = 77/132 (58%), Positives = 90/132 (68%), Gaps = 10/132 (7%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA HR R +SQGA TV DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCIDKVDNRFELVLLAGHRARQISQGAPITVPRDNDKNPVVALREIADETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTEN----------SDFSWHKPEALSFGQMSEGDLLEG 110
DDL+ED IHSLQKHVE+DEP++ E + + E ++F +M+E DLL G
Sbjct: 61 DDLKEDLIHSLQKHVEVDEPEADGEAIADQTGTAVAATDADDAEENITFDRMTEEDLLAG 120
Query: 111 INNIVTPDKRDD 122
I +V P+K DD
Sbjct: 121 IEGLVPPEKSDD 132
>gi|319405452|emb|CBI79071.1| RNA polymerase omega subunit [Bartonella sp. AR 15-3]
Length = 132
Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats.
Identities = 78/131 (59%), Positives = 89/131 (67%), Gaps = 9/131 (6%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA HR R +SQGA+ T+D DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCIDKVDNRFELVLLAGHRARQISQGAQITIDRDNDKNPVVALREIADKTLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEAL---------SFGQMSEGDLLEGI 111
DL+ED IHSLQKHVE+DEP+ E S + L SF MSE +LL GI
Sbjct: 61 ADLKEDLIHSLQKHVEVDEPEGTMEFISHSGEAGDILGSSSEETSGSFDYMSEEELLAGI 120
Query: 112 NNIVTPDKRDD 122
++V P+K DD
Sbjct: 121 ESLVVPEKNDD 131
>gi|13476435|ref|NP_108005.1| DNA-directed RNA polymerase subunit omega [Mesorhizobium loti
MAFF303099]
gi|20978723|sp|Q985B3|RPOZ_RHILO RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|14027196|dbj|BAB54150.1| RNA polymerase omega subunit [Mesorhizobium loti MAFF303099]
Length = 133
Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats.
Identities = 75/132 (56%), Positives = 91/132 (68%), Gaps = 10/132 (7%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA HR R +SQGA+ TV DKN V+ALREIA TLSP
Sbjct: 1 MARVTVEDCIDKVDNRFELVLLAGHRARQISQGAQITVPRDNDKNPVIALREIADETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTE----------NSDFSWHKPEALSFGQMSEGDLLEG 110
DDL+ED IHSLQKHVE+DEP++ E + + + ++F +M+E DLL G
Sbjct: 61 DDLKEDLIHSLQKHVEVDEPEADGEVIADQTGAAVAATETDDAEDNITFDRMTEEDLLAG 120
Query: 111 INNIVTPDKRDD 122
I +V P+K DD
Sbjct: 121 IEGLVPPEKSDD 132
>gi|49475298|ref|YP_033339.1| DNA-directed RNA polymerase subunit omega [Bartonella henselae str.
Houston-1]
gi|81648076|sp|Q6G465|RPOZ_BARHE RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|49238104|emb|CAF27311.1| DNA-directed RNA polymerase omega subunit [Bartonella henselae str.
Houston-1]
Length = 132
Score = 143 bits (360), Expect = 9e-33, Method: Composition-based stats.
Identities = 79/131 (60%), Positives = 89/131 (67%), Gaps = 9/131 (6%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA HR R +SQGA+ TVD DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCIDKVDNRFELVLLAGHRARQISQGAQITVDRDNDKNPVVALREIAEETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWH---------KPEALSFGQMSEGDLLEGI 111
DL+ED IHSLQKHVE+DEP+ +E S + E SF MSE +LL GI
Sbjct: 61 ADLKEDLIHSLQKHVEVDEPEMASEFISHSSEAGGVLGTSSEEEGSSFDHMSEEELLAGI 120
Query: 112 NNIVTPDKRDD 122
+V P+K DD
Sbjct: 121 EGLVVPEKSDD 131
>gi|49474060|ref|YP_032102.1| DNA-directed RNA polymerase subunit omega [Bartonella quintana str.
Toulouse]
gi|81647149|sp|Q6G088|RPOZ_BARQU RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|49239564|emb|CAF25921.1| DNA-directed RNA polymerase omega subunit [Bartonella quintana str.
Toulouse]
Length = 132
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 79/131 (60%), Positives = 89/131 (67%), Gaps = 9/131 (6%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA HR R +SQGA+ TVD DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCIDKVDNRFELVLLAGHRARQISQGAQVTVDRDNDKNPVVALREIAEETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDS---------PTENSDFSWHKPEALSFGQMSEGDLLEGI 111
DL+ED IHSLQKHVE+DEP+ E + + E+ SF MSE DLL GI
Sbjct: 61 ADLKEDLIHSLQKHVEVDEPEMANEFLSHSGEAETVFATTSEEESCSFDCMSEEDLLAGI 120
Query: 112 NNIVTPDKRDD 122
+V P+K DD
Sbjct: 121 EGLVIPEKSDD 131
>gi|319898686|ref|YP_004158779.1| RNA polymerase omega subunit [Bartonella clarridgeiae 73]
gi|319402650|emb|CBI76196.1| RNA polymerase omega subunit [Bartonella clarridgeiae 73]
Length = 132
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 75/131 (57%), Positives = 89/131 (67%), Gaps = 9/131 (6%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA HR R +SQGA+ T+D DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCIDKVDNRFELVLLAGHRARQISQGAQITIDRDNDKNPVVALREIADQTLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTE---------NSDFSWHKPEALSFGQMSEGDLLEGI 111
DL+ED IHSLQK+VE+DEP+ E + S + +F MSE +LL GI
Sbjct: 61 ADLKEDLIHSLQKYVEVDEPEGAMEFISHSSESGDVLGSSSEEGNSAFDYMSEEELLAGI 120
Query: 112 NNIVTPDKRDD 122
++V P+K DD
Sbjct: 121 ESLVVPEKNDD 131
>gi|222085385|ref|YP_002543915.1| DNA-directed RNA polymerase, omega subunit [Agrobacterium
radiobacter K84]
gi|254809288|sp|B9JC68|RPOZ_AGRRK RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|221722833|gb|ACM25989.1| DNA-directed RNA polymerase, omega subunit [Agrobacterium
radiobacter K84]
Length = 134
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 80/133 (60%), Positives = 93/133 (69%), Gaps = 11/133 (8%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKV+NRF LVLLASHR R +SQG+ T+D DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCIDKVENRFELVLLASHRARLISQGSSITIDRDNDKNPVVALREIADETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSP-----------TENSDFSWHKPEALSFGQMSEGDLLE 109
DDL+ED IHSLQKHVEIDEP+ + + D PEA++F QMSE +LL
Sbjct: 61 DDLKEDLIHSLQKHVEIDEPEPDPASLLAAGGNASASGDEEEDAPEAVTFDQMSEEELLA 120
Query: 110 GINNIVTPDKRDD 122
GI +V P+K DD
Sbjct: 121 GIEGLVPPEKSDD 133
>gi|190891067|ref|YP_001977609.1| DNA-directed RNA polymerase omega chain protein [Rhizobium etli
CIAT 652]
gi|209548595|ref|YP_002280512.1| DNA-directed RNA polymerase subunit omega [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|226703164|sp|B3PUN2|RPOZ_RHIE6 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|226703165|sp|B5ZW67|RPOZ_RHILW RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|71084476|gb|AAZ23624.1| RpoZ [Rhizobium etli]
gi|190696346|gb|ACE90431.1| DNA-directed RNA polymerase omega chain protein [Rhizobium etli
CIAT 652]
gi|209534351|gb|ACI54286.1| DNA-directed RNA polymerase, omega subunit [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|327191318|gb|EGE58351.1| DNA-directed RNA polymerase omega chain protein [Rhizobium etli
CNPAF512]
Length = 134
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 79/133 (59%), Positives = 92/133 (69%), Gaps = 11/133 (8%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKV+NRF LVLLASHR R +SQGA T+D DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCIDKVENRFELVLLASHRARLISQGASITIDRDNDKNPVVALREIADETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSP-----------TENSDFSWHKPEALSFGQMSEGDLLE 109
DDL+ED IHSLQKHVE+DEP+ +S+ PE ++F QMSE +LL
Sbjct: 61 DDLKEDLIHSLQKHVEVDEPEPDPASMIAAGGVAAADSEEQDDLPETITFDQMSEEELLA 120
Query: 110 GINNIVTPDKRDD 122
GI +V P+K DD
Sbjct: 121 GIEGLVPPEKSDD 133
>gi|240850191|ref|YP_002971584.1| DNA-directed RNA polymerase subunit omega [Bartonella grahamii
as4aup]
gi|240267314|gb|ACS50902.1| DNA-directed RNA polymerase subunit omega [Bartonella grahamii
as4aup]
Length = 132
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 78/131 (59%), Positives = 90/131 (68%), Gaps = 9/131 (6%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA HR R +SQGA+ T+D DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCIDKVDNRFELVLLAGHRARQISQGAQITIDRDNDKNPVVALREIAEETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDS---------PTENSDFSWHKPEALSFGQMSEGDLLEGI 111
DL+ED IHSLQKHVE+DEP+ E+ + + EA SF MSE +LL GI
Sbjct: 61 ADLKEDLIHSLQKHVEVDEPEMASEFITHSGEAESVFNTSSQEEATSFDHMSEEELLAGI 120
Query: 112 NNIVTPDKRDD 122
+V P+K DD
Sbjct: 121 EGLVVPEKSDD 131
>gi|163867986|ref|YP_001609190.1| DNA-directed RNA polymerase subunit omega [Bartonella tribocorum
CIP 105476]
gi|189043969|sp|A9IRL2|RPOZ_BART1 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|161017637|emb|CAK01195.1| RNA polymerase omega subunit [Bartonella tribocorum CIP 105476]
Length = 132
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 79/131 (60%), Positives = 91/131 (69%), Gaps = 9/131 (6%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA HR R +SQGA+ TVD DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCIDKVDNRFELVLLAGHRARQISQGAQITVDRDNDKNPVVALREIAEETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPD---------SPTENSDFSWHKPEALSFGQMSEGDLLEGI 111
DL+ED IHSLQKHVE+DEP+ S +E+ + + E SF MSE +LL GI
Sbjct: 61 ADLKEDLIHSLQKHVEVDEPEMASEFITHSSESESIFNTSSQEEGTSFDHMSEEELLAGI 120
Query: 112 NNIVTPDKRDD 122
+V P+K DD
Sbjct: 121 EGLVVPEKSDD 131
>gi|154247760|ref|YP_001418718.1| DNA-directed RNA polymerase subunit omega [Xanthobacter
autotrophicus Py2]
gi|226703195|sp|A7IM18|RPOZ_XANP2 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|154161845|gb|ABS69061.1| DNA-directed RNA polymerase, omega subunit [Xanthobacter
autotrophicus Py2]
Length = 129
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 66/126 (52%), Positives = 83/126 (65%), Gaps = 4/126 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA+HR R +S GA+ TVD DKN VVALREIA + P
Sbjct: 1 MARVTVEDCIDKVDNRFELVLLAAHRARMISSGAQITVDRDNDKNPVVALREIADEHVGP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWH----KPEALSFGQMSEGDLLEGINNIVT 116
+DL+ED IHSLQK+ E+DEP+ S + + +M+E +LL G+ +V
Sbjct: 61 EDLKEDLIHSLQKYTEVDEPEPEAVPMIASGDSSGGEDSDVMLDRMTEEELLAGLQGLVP 120
Query: 117 PDKRDD 122
P+ DD
Sbjct: 121 PEHTDD 126
>gi|121602158|ref|YP_988783.1| DNA-directed RNA polymerase subunit omega [Bartonella bacilliformis
KC583]
gi|166229347|sp|A1US30|RPOZ_BARBK RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|120614335|gb|ABM44936.1| DNA-directed RNA polymerase, omega subunit [Bartonella
bacilliformis KC583]
Length = 132
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 79/131 (60%), Positives = 90/131 (68%), Gaps = 9/131 (6%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA HR R +SQGA+ TV DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCIDKVDNRFELVLLAGHRARQISQGAQITVSRDNDKNPVVALREIADETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDS---------PTENSDFSWHKPEALSFGQMSEGDLLEGI 111
DL+ED IHSLQKHVE+DEP++ TE+ + + E SF MSE DLL GI
Sbjct: 61 ADLKEDLIHSLQKHVEVDEPEAVTEFISHSSETESVLDTSREEENCSFDYMSEEDLLAGI 120
Query: 112 NNIVTPDKRDD 122
+V P+K DD
Sbjct: 121 EGLVVPEKSDD 131
>gi|163760600|ref|ZP_02167681.1| DNA-directed RNA polymerase omega subunit [Hoeflea phototrophica
DFL-43]
gi|162282215|gb|EDQ32505.1| DNA-directed RNA polymerase omega subunit [Hoeflea phototrophica
DFL-43]
Length = 133
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 77/132 (58%), Positives = 90/132 (68%), Gaps = 10/132 (7%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKV+NRF LVLLASHR R +SQG + T+ DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCIDKVENRFELVLLASHRARQISQGGQITIARDNDKNPVVALREIADQTLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTE----------NSDFSWHKPEALSFGQMSEGDLLEG 110
DL+ED IHSLQKHVE+DEP+ E + +PEA+SF MSE +LL G
Sbjct: 61 GDLKEDLIHSLQKHVEVDEPEPDPEKFIQAGEASAEAVVEDDQPEAVSFASMSEEELLAG 120
Query: 111 INNIVTPDKRDD 122
I +V P+K DD
Sbjct: 121 IEGLVPPEKSDD 132
>gi|222148077|ref|YP_002549034.1| DNA-directed RNA polymerase subunit omega [Agrobacterium vitis S4]
gi|254809287|sp|B9JUN3|RPOZ_AGRVS RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|221735065|gb|ACM36028.1| DNA-directed RNA polymerase omega subunit [Agrobacterium vitis S4]
Length = 132
Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats.
Identities = 80/131 (61%), Positives = 92/131 (70%), Gaps = 9/131 (6%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLASHR R +SQGA+ T+D DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCIDKVDNRFELVLLASHRARQISQGAQITIDRDNDKNPVVALREIADETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTEN---------SDFSWHKPEALSFGQMSEGDLLEGI 111
DDL+ED IHSLQKHVE+DEP+ + S PE ++F QMSE +LL GI
Sbjct: 61 DDLKEDLIHSLQKHVEVDEPEQDAASIAEGQLTSGSQDEDEMPETVAFDQMSEEELLAGI 120
Query: 112 NNIVTPDKRDD 122
+V P+K DD
Sbjct: 121 EGLVPPEKSDD 131
>gi|241203883|ref|YP_002974979.1| DNA-directed RNA polymerase subunit omega [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240857773|gb|ACS55440.1| DNA-directed RNA polymerase, omega subunit [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 134
Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats.
Identities = 79/133 (59%), Positives = 92/133 (69%), Gaps = 11/133 (8%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKV+NRF LVLLASHR R +SQGA T+D DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCIDKVENRFELVLLASHRARLISQGASITIDRDNDKNPVVALREIADETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSP-----------TENSDFSWHKPEALSFGQMSEGDLLE 109
DDL+ED IHSLQKHVE+DEP+ +S+ PE ++F QMSE +LL
Sbjct: 61 DDLKEDLIHSLQKHVEVDEPEPDPASMIAAGGVAAADSEEQDDVPETITFDQMSEEELLA 120
Query: 110 GINNIVTPDKRDD 122
GI +V P+K DD
Sbjct: 121 GIEGLVPPEKSDD 133
>gi|150395900|ref|YP_001326367.1| DNA-directed RNA polymerase subunit omega [Sinorhizobium medicae
WSM419]
gi|166230365|sp|A6U7A2|RPOZ_SINMW RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|150027415|gb|ABR59532.1| DNA-directed RNA polymerase, omega subunit [Sinorhizobium medicae
WSM419]
Length = 135
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 79/134 (58%), Positives = 91/134 (67%), Gaps = 12/134 (8%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKV+NRF LVLLASHR R +SQGA TVD DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCIDKVENRFELVLLASHRARLVSQGAPITVDRDNDKNPVVALREIADETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSP------------TENSDFSWHKPEALSFGQMSEGDLL 108
DL+ED IHSLQKHVE+DEP+ + +PEAL+F +MSE +LL
Sbjct: 61 GDLKEDLIHSLQKHVEVDEPEPDPASLVQTEATPAFAEAAEEEDQPEALTFDRMSEEELL 120
Query: 109 EGINNIVTPDKRDD 122
GI +V P+K DD
Sbjct: 121 AGIEGLVPPEKSDD 134
>gi|15964817|ref|NP_385170.1| DNA-directed RNA polymerase subunit omega [Sinorhizobium meliloti
1021]
gi|307300887|ref|ZP_07580656.1| DNA-directed RNA polymerase, omega subunit [Sinorhizobium meliloti
BL225C]
gi|307320704|ref|ZP_07600116.1| DNA-directed RNA polymerase, omega subunit [Sinorhizobium meliloti
AK83]
gi|20978708|sp|Q92R52|RPOZ_RHIME RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|15073996|emb|CAC45643.1| DNA-directed RNA polymerase omega subunit [Sinorhizobium meliloti
1021]
gi|306893631|gb|EFN24405.1| DNA-directed RNA polymerase, omega subunit [Sinorhizobium meliloti
AK83]
gi|306903842|gb|EFN34428.1| DNA-directed RNA polymerase, omega subunit [Sinorhizobium meliloti
BL225C]
Length = 135
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 79/134 (58%), Positives = 91/134 (67%), Gaps = 12/134 (8%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKV+NRF LVLLASHR R +SQGA TVD DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCIDKVENRFELVLLASHRARLVSQGAPITVDRDNDKNPVVALREIADETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSP------------TENSDFSWHKPEALSFGQMSEGDLL 108
DL+ED IHSLQKHVE+DEP+ + +PEAL+F +MSE +LL
Sbjct: 61 GDLKEDLIHSLQKHVEVDEPEPDPASLVQTEAAPAFAEAAEEEDQPEALTFDRMSEEELL 120
Query: 109 EGINNIVTPDKRDD 122
GI +V P+K DD
Sbjct: 121 AGIEGLVPPEKSDD 134
>gi|328543519|ref|YP_004303628.1| DNA-directed RNA polymerase subunit omega [polymorphum gilvum
SL003B-26A1]
gi|326413263|gb|ADZ70326.1| DNA-directed RNA polymerase subunit omega [Polymorphum gilvum
SL003B-26A1]
Length = 132
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 70/131 (53%), Positives = 86/131 (65%), Gaps = 9/131 (6%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKV+NRF LVLLA+HR R +S G+ TVD DKN VVALREIA T+SP
Sbjct: 1 MARVTVEDCIDKVENRFELVLLAAHRARMISSGSPLTVDRDNDKNPVVALREIADQTVSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWH---------KPEALSFGQMSEGDLLEGI 111
+DL+ED IHSLQK+VE+DEP+ S + F +MSE DLL G+
Sbjct: 61 EDLKEDLIHSLQKYVEVDEPEPEAVPLVPSSQQSSTQVNAVDDANVEFDRMSEEDLLRGL 120
Query: 112 NNIVTPDKRDD 122
+V P++ DD
Sbjct: 121 EGLVPPERSDD 131
>gi|158422877|ref|YP_001524169.1| DNA-directed RNA polymerase subunit omega [Azorhizobium caulinodans
ORS 571]
gi|172047929|sp|A8I0F9|RPOZ_AZOC5 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|158329766|dbj|BAF87251.1| RNA polymerase omega subunit [Azorhizobium caulinodans ORS 571]
Length = 128
Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats.
Identities = 67/125 (53%), Positives = 84/125 (67%), Gaps = 3/125 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA HR R +S G+ TVD DKN VVALREIA T+SP
Sbjct: 1 MARVTVEDCIDKVDNRFELVLLAGHRARMISSGSPITVDRDNDKNPVVALREIADETVSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPT---ENSDFSWHKPEALSFGQMSEGDLLEGINNIVTP 117
+DL+ED IHSLQK+ E+DEP+ + S + +M+E +LL G+ +V P
Sbjct: 61 EDLKEDLIHSLQKYTEVDEPEPESVPLIASSEGGVDDADIVLDRMTEEELLAGLQGLVPP 120
Query: 118 DKRDD 122
++ DD
Sbjct: 121 EQTDD 125
>gi|118587967|ref|ZP_01545377.1| DNA-directed RNA polymerase subunit omega [Stappia aggregata IAM
12614]
gi|118439589|gb|EAV46220.1| DNA-directed RNA polymerase subunit omega [Stappia aggregata IAM
12614]
Length = 133
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 69/132 (52%), Positives = 89/132 (67%), Gaps = 10/132 (7%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKV+NRF LVLLA+HR R +S G+ T+D DKN VVALREIA T+SP
Sbjct: 1 MARVTVEDCIDKVENRFELVLLAAHRARMISSGSPLTIDRDNDKNPVVALREIAEQTVSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWH----------KPEALSFGQMSEGDLLEG 110
+D++ED IHSLQK+VE+DEP++ S + A+ F +MSE DLL G
Sbjct: 61 EDMKEDLIHSLQKYVEVDEPEADAVPMVPSSNQHQMTQVNNVDDSAVEFDRMSEEDLLRG 120
Query: 111 INNIVTPDKRDD 122
+ +V P++ DD
Sbjct: 121 LEGLVPPERTDD 132
>gi|110633299|ref|YP_673507.1| DNA-directed RNA polymerase subunit omega [Mesorhizobium sp. BNC1]
gi|123162589|sp|Q11JT3|RPOZ_MESSB RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|110284283|gb|ABG62342.1| DNA-directed RNA polymerase subunit omega [Chelativorans sp. BNC1]
Length = 131
Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats.
Identities = 75/130 (57%), Positives = 89/130 (68%), Gaps = 8/130 (6%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKV+NRF LVLLASHR R +SQG + T+D DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCIDKVENRFDLVLLASHRARQISQGEQITIDRDNDKNPVVALREIADETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSP--------TENSDFSWHKPEALSFGQMSEGDLLEGIN 112
DL+E IHSLQKHVE+DEP++ E D E ++F +MSE +LL GI
Sbjct: 61 GDLKEALIHSLQKHVEVDEPEADLPQIASQAEETPDAELAPEENIAFDRMSEEELLAGIE 120
Query: 113 NIVTPDKRDD 122
+V P+K DD
Sbjct: 121 GLVPPEKNDD 130
>gi|319404012|emb|CBI77600.1| RNA polymerase omega subunit [Bartonella rochalimae ATCC BAA-1498]
Length = 132
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 76/131 (58%), Positives = 89/131 (67%), Gaps = 9/131 (6%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA HR R +S+GA+ T+D DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCIDKVDNRFELVLLAGHRARQISEGAQITIDRDNDKNPVVALREIADETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTE---------NSDFSWHKPEALSFGQMSEGDLLEGI 111
DL+ED IHSLQKHVE+DEP+ E + S + SF MSE +LL GI
Sbjct: 61 ADLKEDLIHSLQKHVEVDEPEGTMEFISHSGESRDIVGSSSEENTGSFDYMSEEELLAGI 120
Query: 112 NNIVTPDKRDD 122
++V P+K DD
Sbjct: 121 ESLVVPEKSDD 131
>gi|90420857|ref|ZP_01228762.1| DNA-directed RNA polymerase omega subunit [Aurantimonas
manganoxydans SI85-9A1]
gi|90334832|gb|EAS48604.1| DNA-directed RNA polymerase omega subunit [Aurantimonas
manganoxydans SI85-9A1]
Length = 134
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 75/133 (56%), Positives = 89/133 (66%), Gaps = 11/133 (8%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKVDNRF LVLLASHR R +SQG T+D DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCVDKVDNRFELVLLASHRARQISQGQPITIDRDNDKNPVVALREIADETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEP-----------DSPTENSDFSWHKPEALSFGQMSEGDLLE 109
DL+ED IHSLQKHVE+DEP ++ + + E +SF +MSE +LL
Sbjct: 61 GDLKEDLIHSLQKHVEVDEPEPAPQPAAAPTETRSIAAAAEAGDDEPVSFDRMSEEELLS 120
Query: 110 GINNIVTPDKRDD 122
GI +V P+K DD
Sbjct: 121 GIEGLVPPEKTDD 133
>gi|319407025|emb|CBI80662.1| RNA polymerase omega subunit [Bartonella sp. 1-1C]
Length = 132
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 77/131 (58%), Positives = 91/131 (69%), Gaps = 9/131 (6%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA HR R +SQGA+ T+D DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCIDKVDNRFELVLLAGHRARQISQGAQITIDRDNDKNPVVALREIADETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPD---------SPTENSDFSWHKPEALSFGQMSEGDLLEGI 111
DL+ED IHSLQKHVE+DEP+ S + + S + + SF MSE +LL GI
Sbjct: 61 ADLKEDLIHSLQKHVEVDEPEGTMEFISHASESRDILSSSSEESSGSFDYMSEEELLAGI 120
Query: 112 NNIVTPDKRDD 122
++V P+K DD
Sbjct: 121 ESLVVPEKNDD 131
>gi|304392074|ref|ZP_07374016.1| DNA-directed RNA polymerase subunit omega [Ahrensia sp. R2A130]
gi|303296303|gb|EFL90661.1| DNA-directed RNA polymerase subunit omega [Ahrensia sp. R2A130]
Length = 131
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 74/130 (56%), Positives = 85/130 (65%), Gaps = 8/130 (6%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKV NRF LVLLASHR R +S GA +VD DKN VVALREIA LSP
Sbjct: 1 MARVTVEDCIDKVSNRFELVLLASHRARQISSGAMISVDRDNDKNPVVALREIADEQLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDS--------PTENSDFSWHKPEALSFGQMSEGDLLEGIN 112
DL+ED IHSLQKHVE+DE + E +D P ++F MSE DLL +
Sbjct: 61 GDLKEDLIHSLQKHVEVDEAEDVMETPITAEGETADKPEDAPALVTFDNMSEEDLLSSLQ 120
Query: 113 NIVTPDKRDD 122
N+V P+K DD
Sbjct: 121 NLVAPEKTDD 130
>gi|86357022|ref|YP_468914.1| DNA-directed RNA polymerase subunit omega [Rhizobium etli CFN 42]
gi|108884784|sp|Q2KAE9|RPOZ_RHIEC RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|86281124|gb|ABC90187.1| DNA-directed RNA polymerase omega chain protein [Rhizobium etli CFN
42]
Length = 134
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 79/133 (59%), Positives = 92/133 (69%), Gaps = 11/133 (8%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKV+NRF LVLLASHR R +SQGA T+D DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCIDKVENRFELVLLASHRARLISQGASITIDRDNDKNPVVALREIADETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSP-----------TENSDFSWHKPEALSFGQMSEGDLLE 109
DDL+ED IHSLQKHVE+DEP+ +S+ PE ++F QMSE +LL
Sbjct: 61 DDLKEDLIHSLQKHVEVDEPEPDPASMIAAGGAAAADSEEQDDLPETITFDQMSEEELLA 120
Query: 110 GINNIVTPDKRDD 122
GI +V P+K DD
Sbjct: 121 GIEGLVPPEKSDD 133
>gi|114706255|ref|ZP_01439157.1| DNA-directed RNA polymerase omega subunit [Fulvimarina pelagi
HTCC2506]
gi|114538116|gb|EAU41238.1| DNA-directed RNA polymerase omega subunit [Fulvimarina pelagi
HTCC2506]
Length = 132
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 74/131 (56%), Positives = 89/131 (67%), Gaps = 9/131 (6%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKVDNRF LVLLASHR R +SQG TVD DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCVDKVDNRFELVLLASHRARQISQGNPITVDRDNDKNPVVALREIADETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDS---------PTENSDFSWHKPEALSFGQMSEGDLLEGI 111
+DL+ED IH+LQKHVE+DEP+ P + + ++F +MSE +LL GI
Sbjct: 61 EDLKEDLIHTLQKHVEVDEPEETRPTERSEAPAPQAAIQEKPDDTVAFDRMSEDELLAGI 120
Query: 112 NNIVTPDKRDD 122
+V P+K DD
Sbjct: 121 EGLVAPEKTDD 131
>gi|239831486|ref|ZP_04679815.1| DNA-directed RNA polymerase, omega subunit [Ochrobactrum
intermedium LMG 3301]
gi|239823753|gb|EEQ95321.1| DNA-directed RNA polymerase, omega subunit [Ochrobactrum
intermedium LMG 3301]
Length = 134
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 74/133 (55%), Positives = 91/133 (68%), Gaps = 11/133 (8%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV+NRF LVLLA HR R +SQGA+ T+D DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCVDKVENRFELVLLAGHRARQISQGAQITIDRDNDKNPVVALREIADETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKP-----------EALSFGQMSEGDLLE 109
DDL+ED IHSLQKHVE+DEP++ S + + ++F +MSE +LL
Sbjct: 61 DDLKEDLIHSLQKHVEVDEPEAAAPAQIASSSEDVAEGIAEAAEEDVVTFDRMSEEELLA 120
Query: 110 GINNIVTPDKRDD 122
GI +V P+K DD
Sbjct: 121 GIEGLVAPEKNDD 133
>gi|116251271|ref|YP_767109.1| DNA-directed RNA polymerase subunit omega [Rhizobium leguminosarum
bv. viciae 3841]
gi|122988606|sp|Q1MJ60|RPOZ_RHIL3 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|115255919|emb|CAK07000.1| putative polymerase [Rhizobium leguminosarum bv. viciae 3841]
Length = 134
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 78/133 (58%), Positives = 91/133 (68%), Gaps = 11/133 (8%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKV+NRF LVLLASHR R +SQGA T+D DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCIDKVENRFELVLLASHRARLISQGASITIDRDNDKNPVVALREIADETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSP-----------TENSDFSWHKPEALSFGQMSEGDLLE 109
DDL+ED IHSLQKHVE+DEP+ + + PE ++F QMSE +LL
Sbjct: 61 DDLKEDLIHSLQKHVEVDEPEPDPASMIAAGGVAAADGEEQDDVPETITFDQMSEEELLA 120
Query: 110 GINNIVTPDKRDD 122
GI +V P+K DD
Sbjct: 121 GIEGLVPPEKSDD 133
>gi|307946591|ref|ZP_07661926.1| DNA-directed RNA polymerase subunit omega [Roseibium sp. TrichSKD4]
gi|307770255|gb|EFO29481.1| DNA-directed RNA polymerase subunit omega [Roseibium sp. TrichSKD4]
Length = 134
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 67/132 (50%), Positives = 87/132 (65%), Gaps = 10/132 (7%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKV+NRF LVLLA+HR R +S G+ T++ DKN VVALREIA T+SP
Sbjct: 1 MARVTVEDCIDKVENRFELVLLAAHRARMISSGSPLTIERDNDKNPVVALREIAEQTVSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENS----------DFSWHKPEALSFGQMSEGDLLEG 110
+D++ED IHSLQK+VE+DEP+ + A+ F +MSE DLL G
Sbjct: 61 EDMKEDLIHSLQKYVEVDEPEEDAVPMVPAPGQQNVTQVNSVDDTAVEFDRMSEEDLLRG 120
Query: 111 INNIVTPDKRDD 122
+ +V PD+ +D
Sbjct: 121 LEGLVPPDRSND 132
>gi|298291614|ref|YP_003693553.1| DNA-directed RNA polymerase subunit omega [Starkeya novella DSM
506]
gi|296928125|gb|ADH88934.1| DNA-directed RNA polymerase, omega subunit [Starkeya novella DSM
506]
Length = 129
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 66/126 (52%), Positives = 82/126 (65%), Gaps = 4/126 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA HR R ++ G+ TVD DKN VVALREIA T+SP
Sbjct: 1 MARVTVEDCIDKVDNRFELVLLAGHRARTIASGSPITVDRDNDKNPVVALREIADETISP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTE----NSDFSWHKPEALSFGQMSEGDLLEGINNIVT 116
+DL E+ IHSLQK E+DEP+ T +S + +M+E +LL G+ +V
Sbjct: 61 EDLREELIHSLQKFTEVDEPEPETVPMIASSGSEGADDSDIMLDRMTEEELLAGLQGLVP 120
Query: 117 PDKRDD 122
P+ DD
Sbjct: 121 PEPSDD 126
>gi|182679398|ref|YP_001833544.1| DNA-directed RNA polymerase subunit omega [Beijerinckia indica
subsp. indica ATCC 9039]
gi|226699546|sp|B2IIA1|RPOZ_BEII9 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|182635281|gb|ACB96055.1| DNA-directed RNA polymerase, omega subunit [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 131
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 68/128 (53%), Positives = 83/128 (64%), Gaps = 6/128 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKV+NRF LVLLASHR R ++ G TV+ DKN VVALREIA TL+P
Sbjct: 1 MARVTVEDCIDKVENRFELVLLASHRARLIASGTPITVERDNDKNPVVALREIADETLTP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTE------NSDFSWHKPEALSFGQMSEGDLLEGINNI 114
+DL+EDFI SLQKHVE+DEP++ + F +M+E DLL G+ +
Sbjct: 61 EDLKEDFIQSLQKHVEVDEPEAEAVPALSSAPDAAQSDAMGDVQFDRMTEEDLLRGLEGL 120
Query: 115 VTPDKRDD 122
V P DD
Sbjct: 121 VPPAATDD 128
>gi|254505232|ref|ZP_05117383.1| DNA-directed RNA polymerase, omega subunit, putative [Labrenzia
alexandrii DFL-11]
gi|222441303|gb|EEE47982.1| DNA-directed RNA polymerase, omega subunit, putative [Labrenzia
alexandrii DFL-11]
Length = 133
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 66/132 (50%), Positives = 90/132 (68%), Gaps = 10/132 (7%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKV+NRF LVL+A+HR R +S G+ T+D DKN VVALREIA T+SP
Sbjct: 1 MARVTVEDCIDKVENRFELVLIAAHRARMISSGSPLTIDRDNDKNPVVALREIAEQTVSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPT----------ENSDFSWHKPEALSFGQMSEGDLLEG 110
+D++ED IHSLQK VE+DEP++ + + + + A+ F +M+E DLL G
Sbjct: 61 EDMKEDLIHSLQKFVEVDEPEAESVPVVAVPGQQQVTQVNNVDDSAVEFDRMTEEDLLRG 120
Query: 111 INNIVTPDKRDD 122
+ +V P++ DD
Sbjct: 121 LEGLVPPERTDD 132
>gi|17987580|ref|NP_540214.1| DNA-directed RNA polymerase subunit omega [Brucella melitensis bv.
1 str. 16M]
gi|62289611|ref|YP_221404.1| DNA-directed RNA polymerase subunit omega [Brucella abortus bv. 1
str. 9-941]
gi|82699539|ref|YP_414113.1| DNA-directed RNA polymerase subunit omega [Brucella melitensis
biovar Abortus 2308]
gi|148558889|ref|YP_001258635.1| DNA-directed RNA polymerase subunit omega [Brucella ovis ATCC
25840]
gi|189023865|ref|YP_001934633.1| DNA-directed RNA polymerase subunit omega [Brucella abortus S19]
gi|225627153|ref|ZP_03785191.1| DNA-directed RNA polymerase, omega subunit [Brucella ceti str.
Cudo]
gi|225852172|ref|YP_002732405.1| DNA-directed RNA polymerase subunit omega [Brucella melitensis ATCC
23457]
gi|237815106|ref|ZP_04594104.1| DNA-directed RNA polymerase, omega subunit [Brucella abortus str.
2308 A]
gi|254688927|ref|ZP_05152181.1| DNA-directed RNA polymerase subunit omega [Brucella abortus bv. 6
str. 870]
gi|254693409|ref|ZP_05155237.1| DNA-directed RNA polymerase subunit omega [Brucella abortus bv. 3
str. Tulya]
gi|254697061|ref|ZP_05158889.1| DNA-directed RNA polymerase subunit omega [Brucella abortus bv. 2
str. 86/8/59]
gi|254701439|ref|ZP_05163267.1| DNA-directed RNA polymerase subunit omega [Brucella suis bv. 5 str.
513]
gi|254707640|ref|ZP_05169468.1| DNA-directed RNA polymerase subunit omega [Brucella pinnipedialis
M163/99/10]
gi|254709778|ref|ZP_05171589.1| DNA-directed RNA polymerase subunit omega [Brucella pinnipedialis
B2/94]
gi|254729958|ref|ZP_05188536.1| DNA-directed RNA polymerase subunit omega [Brucella abortus bv. 4
str. 292]
gi|256031268|ref|ZP_05444882.1| DNA-directed RNA polymerase subunit omega [Brucella pinnipedialis
M292/94/1]
gi|256044348|ref|ZP_05447252.1| DNA-directed RNA polymerase subunit omega [Brucella melitensis bv.
1 str. Rev.1]
gi|256060779|ref|ZP_05450941.1| DNA-directed RNA polymerase subunit omega [Brucella neotomae 5K33]
gi|256113191|ref|ZP_05454059.1| DNA-directed RNA polymerase subunit omega [Brucella melitensis bv.
3 str. Ether]
gi|256257175|ref|ZP_05462711.1| DNA-directed RNA polymerase subunit omega [Brucella abortus bv. 9
str. C68]
gi|256264317|ref|ZP_05466849.1| RNA polymerase [Brucella melitensis bv. 2 str. 63/9]
gi|260168404|ref|ZP_05755215.1| DNA-directed RNA polymerase subunit omega [Brucella sp. F5/99]
gi|260545633|ref|ZP_05821374.1| RNA polymerase [Brucella abortus NCTC 8038]
gi|260563700|ref|ZP_05834186.1| RNA polymerase [Brucella melitensis bv. 1 str. 16M]
gi|260754414|ref|ZP_05866762.1| DNA-directed RNA polymerase subunit omega [Brucella abortus bv. 6
str. 870]
gi|260757633|ref|ZP_05869981.1| DNA-directed RNA polymerase subunit omega [Brucella abortus bv. 4
str. 292]
gi|260761460|ref|ZP_05873803.1| DNA-directed RNA polymerase subunit omega [Brucella abortus bv. 2
str. 86/8/59]
gi|260883442|ref|ZP_05895056.1| DNA-directed RNA polymerase subunit omega [Brucella abortus bv. 9
str. C68]
gi|261213660|ref|ZP_05927941.1| DNA-directed RNA polymerase subunit omega [Brucella abortus bv. 3
str. Tulya]
gi|261315133|ref|ZP_05954330.1| DNA-directed RNA polymerase subunit omega [Brucella pinnipedialis
M163/99/10]
gi|261317311|ref|ZP_05956508.1| DNA-directed RNA polymerase subunit omega [Brucella pinnipedialis
B2/94]
gi|261324770|ref|ZP_05963967.1| DNA-directed RNA polymerase subunit omega [Brucella neotomae 5K33]
gi|261751979|ref|ZP_05995688.1| DNA-directed RNA polymerase subunit omega [Brucella suis bv. 5 str.
513]
gi|261757866|ref|ZP_06001575.1| RNA polymerase [Brucella sp. F5/99]
gi|265988350|ref|ZP_06100907.1| DNA-directed RNA polymerase subunit omega [Brucella pinnipedialis
M292/94/1]
gi|265990763|ref|ZP_06103320.1| DNA-directed RNA polymerase subunit omega [Brucella melitensis bv.
1 str. Rev.1]
gi|265994599|ref|ZP_06107156.1| DNA-directed RNA polymerase subunit omega [Brucella melitensis bv.
3 str. Ether]
gi|294852015|ref|ZP_06792688.1| DNA-directed RNA polymerase subunit omega [Brucella sp. NVSL
07-0026]
gi|297248023|ref|ZP_06931741.1| DNA-directed RNA polymerase subunit omega [Brucella abortus bv. 5
str. B3196]
gi|20978692|sp|Q8YG64|RPOZ_BRUME RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|75497088|sp|Q57E91|RPOZ_BRUAB RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|115305575|sp|Q2YN12|RPOZ_BRUA2 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|166229351|sp|A5VPI8|RPOZ_BRUO2 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|226699549|sp|B2SAC9|RPOZ_BRUA1 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|254809277|sp|C0RHZ3|RPOZ_BRUMB RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|17983286|gb|AAL52478.1| DNA-directed RNA polymerase omega chain [Brucella melitensis bv. 1
str. 16M]
gi|62195743|gb|AAX74043.1| RpoZ, DNA-directed RNA polymerase, omega subunit [Brucella abortus
bv. 1 str. 9-941]
gi|82615640|emb|CAJ10627.1| RNA polymerase, omega subunit:RNA polymerase Rpb6 [Brucella
melitensis biovar Abortus 2308]
gi|148370146|gb|ABQ60125.1| dna-directed rna polymerase omega chain (rnap omegasubunit)
(transcriptase omega chain) (rna polymerase omega
subunit) [Brucella ovis ATCC 25840]
gi|189019437|gb|ACD72159.1| RNA polymerase, omega subunit [Brucella abortus S19]
gi|225617988|gb|EEH15032.1| DNA-directed RNA polymerase, omega subunit [Brucella ceti str.
Cudo]
gi|225640537|gb|ACO00451.1| DNA-directed RNA polymerase, omega subunit [Brucella melitensis
ATCC 23457]
gi|237789943|gb|EEP64153.1| DNA-directed RNA polymerase, omega subunit [Brucella abortus str.
2308 A]
gi|260097040|gb|EEW80915.1| RNA polymerase [Brucella abortus NCTC 8038]
gi|260153716|gb|EEW88808.1| RNA polymerase [Brucella melitensis bv. 1 str. 16M]
gi|260667951|gb|EEX54891.1| DNA-directed RNA polymerase subunit omega [Brucella abortus bv. 4
str. 292]
gi|260671892|gb|EEX58713.1| DNA-directed RNA polymerase subunit omega [Brucella abortus bv. 2
str. 86/8/59]
gi|260674522|gb|EEX61343.1| DNA-directed RNA polymerase subunit omega [Brucella abortus bv. 6
str. 870]
gi|260872970|gb|EEX80039.1| DNA-directed RNA polymerase subunit omega [Brucella abortus bv. 9
str. C68]
gi|260915267|gb|EEX82128.1| DNA-directed RNA polymerase subunit omega [Brucella abortus bv. 3
str. Tulya]
gi|261296534|gb|EEY00031.1| DNA-directed RNA polymerase subunit omega [Brucella pinnipedialis
B2/94]
gi|261300750|gb|EEY04247.1| DNA-directed RNA polymerase subunit omega [Brucella neotomae 5K33]
gi|261304159|gb|EEY07656.1| DNA-directed RNA polymerase subunit omega [Brucella pinnipedialis
M163/99/10]
gi|261737850|gb|EEY25846.1| RNA polymerase [Brucella sp. F5/99]
gi|261741732|gb|EEY29658.1| DNA-directed RNA polymerase subunit omega [Brucella suis bv. 5 str.
513]
gi|262765712|gb|EEZ11501.1| DNA-directed RNA polymerase subunit omega [Brucella melitensis bv.
3 str. Ether]
gi|263001547|gb|EEZ14122.1| DNA-directed RNA polymerase subunit omega [Brucella melitensis bv.
1 str. Rev.1]
gi|263094590|gb|EEZ18388.1| RNA polymerase [Brucella melitensis bv. 2 str. 63/9]
gi|264660547|gb|EEZ30808.1| DNA-directed RNA polymerase subunit omega [Brucella pinnipedialis
M292/94/1]
gi|294820604|gb|EFG37603.1| DNA-directed RNA polymerase subunit omega [Brucella sp. NVSL
07-0026]
gi|297175192|gb|EFH34539.1| DNA-directed RNA polymerase subunit omega [Brucella abortus bv. 5
str. B3196]
gi|326408673|gb|ADZ65738.1| RNA polymerase, omega subunit [Brucella melitensis M28]
gi|326538398|gb|ADZ86613.1| DNA-directed RNA polymerase, omega subunit [Brucella melitensis
M5-90]
Length = 133
Score = 134 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 73/131 (55%), Positives = 87/131 (66%), Gaps = 10/131 (7%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV+NRF LVLLA HR R +SQGA TVD DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCVDKVENRFELVLLAGHRARQISQGAPITVDRDNDKNPVVALREIADETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPD----------SPTENSDFSWHKPEALSFGQMSEGDLLEG 110
DDL+ED IHSLQKHVE+DEP+ + + ++F +MSE +LL G
Sbjct: 61 DDLKEDLIHSLQKHVEVDEPEAAPAQIANAAEEIAEGIAEAGEEDVVTFDRMSEEELLAG 120
Query: 111 INNIVTPDKRD 121
I +V P+K D
Sbjct: 121 IEGLVAPEKND 131
>gi|256159378|ref|ZP_05457160.1| DNA-directed RNA polymerase subunit omega [Brucella ceti M490/95/1]
gi|256254676|ref|ZP_05460212.1| DNA-directed RNA polymerase subunit omega [Brucella ceti B1/94]
gi|261221853|ref|ZP_05936134.1| DNA-directed RNA polymerase subunit omega [Brucella ceti B1/94]
gi|265997817|ref|ZP_06110374.1| DNA-directed RNA polymerase subunit omega [Brucella ceti M490/95/1]
gi|260920437|gb|EEX87090.1| DNA-directed RNA polymerase subunit omega [Brucella ceti B1/94]
gi|262552285|gb|EEZ08275.1| DNA-directed RNA polymerase subunit omega [Brucella ceti M490/95/1]
Length = 133
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 73/131 (55%), Positives = 87/131 (66%), Gaps = 10/131 (7%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV+NRF LVLLA HR R +SQGA TVD DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCVDKVENRFELVLLAGHRARQISQGAPITVDRDNDKNPVVALREIADETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPD----------SPTENSDFSWHKPEALSFGQMSEGDLLEG 110
DDL+ED IHSLQKHVE+DEP+ + + ++F +MSE +LL G
Sbjct: 61 DDLKEDLIHSLQKHVEVDEPEAAPAQIANAAEEIAEGIVEAGEEDVVTFDRMSEEELLAG 120
Query: 111 INNIVTPDKRD 121
I +V P+K D
Sbjct: 121 IEGLVAPEKND 131
>gi|254718793|ref|ZP_05180604.1| DNA-directed RNA polymerase subunit omega [Brucella sp. 83/13]
gi|265983774|ref|ZP_06096509.1| DNA-directed RNA polymerase subunit omega [Brucella sp. 83/13]
gi|306837513|ref|ZP_07470388.1| DNA-directed RNA polymerase, omega subunit [Brucella sp. NF 2653]
gi|264662366|gb|EEZ32627.1| DNA-directed RNA polymerase subunit omega [Brucella sp. 83/13]
gi|306407405|gb|EFM63609.1| DNA-directed RNA polymerase, omega subunit [Brucella sp. NF 2653]
Length = 133
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 75/132 (56%), Positives = 89/132 (67%), Gaps = 10/132 (7%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV+NRF LVLLA HR R +SQGA TVD DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCVDKVENRFELVLLAGHRARQISQGAPITVDRDNDKNPVVALREIADETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPD----------SPTENSDFSWHKPEALSFGQMSEGDLLEG 110
DDL+ED IHSLQKHVE+DEP+ + + ++F +MSE +LL G
Sbjct: 61 DDLKEDLIHSLQKHVEVDEPEAAPAQIANAAEEIAEGIAEAGEEDVVTFDRMSEEELLAG 120
Query: 111 INNIVTPDKRDD 122
I +VTP+K DD
Sbjct: 121 IEGLVTPEKNDD 132
>gi|153009964|ref|YP_001371179.1| DNA-directed RNA polymerase subunit omega [Ochrobactrum anthropi
ATCC 49188]
gi|166230338|sp|A6X296|RPOZ_OCHA4 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|151561852|gb|ABS15350.1| DNA-directed RNA polymerase, omega subunit [Ochrobactrum anthropi
ATCC 49188]
Length = 134
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 73/133 (54%), Positives = 89/133 (66%), Gaps = 11/133 (8%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV+NRF LVLLA HR R +SQGA+ T+D DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCVDKVENRFELVLLAGHRARQISQGAQITIDRDNDKNPVVALREIADETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPD-----------SPTENSDFSWHKPEALSFGQMSEGDLLE 109
DDL+ED IHSLQKHVE+DEP+ + + ++F +MSE +LL
Sbjct: 61 DDLKEDLIHSLQKHVEVDEPEAAAPAQIASSSEEVAEGIADAAEEDMVAFDRMSEEELLA 120
Query: 110 GINNIVTPDKRDD 122
GI +V P+K DD
Sbjct: 121 GIEGLVAPEKNDD 133
>gi|254469868|ref|ZP_05083273.1| RNA polymerase omega subunit [Pseudovibrio sp. JE062]
gi|211961703|gb|EEA96898.1| RNA polymerase omega subunit [Pseudovibrio sp. JE062]
Length = 131
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 67/130 (51%), Positives = 88/130 (67%), Gaps = 8/130 (6%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV+NRF LVLLASHR R +S G+ T+D DKN VVALREIA T+SP
Sbjct: 1 MARVTVEDCVDKVENRFELVLLASHRARMISSGSPLTIDRDNDKNPVVALREIAEETVSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPT--------ENSDFSWHKPEALSFGQMSEGDLLEGIN 112
+DL+ED IHSLQK VE+DEP++ T + + + F ++E DLL+G+
Sbjct: 61 EDLKEDLIHSLQKFVEVDEPEAETAPMVPSDPQQLQINAVDDSEVEFDSITEEDLLKGLE 120
Query: 113 NIVTPDKRDD 122
+V P++ DD
Sbjct: 121 GLVPPERSDD 130
>gi|254713780|ref|ZP_05175591.1| DNA-directed RNA polymerase subunit omega [Brucella ceti M644/93/1]
gi|254717163|ref|ZP_05178974.1| DNA-directed RNA polymerase subunit omega [Brucella ceti M13/05/1]
gi|256369089|ref|YP_003106597.1| DNA-directed RNA polymerase omega subunit [Brucella microti CCM
4915]
gi|261218979|ref|ZP_05933260.1| DNA-directed RNA polymerase subunit omega [Brucella ceti M13/05/1]
gi|261321522|ref|ZP_05960719.1| DNA-directed RNA polymerase subunit omega [Brucella ceti M644/93/1]
gi|306842084|ref|ZP_07474756.1| DNA-directed RNA polymerase, omega subunit [Brucella sp. BO2]
gi|306845252|ref|ZP_07477828.1| DNA-directed RNA polymerase, omega subunit [Brucella sp. BO1]
gi|255999249|gb|ACU47648.1| DNA-directed RNA polymerase omega subunit [Brucella microti CCM
4915]
gi|260924068|gb|EEX90636.1| DNA-directed RNA polymerase subunit omega [Brucella ceti M13/05/1]
gi|261294212|gb|EEX97708.1| DNA-directed RNA polymerase subunit omega [Brucella ceti M644/93/1]
gi|306274411|gb|EFM56218.1| DNA-directed RNA polymerase, omega subunit [Brucella sp. BO1]
gi|306287834|gb|EFM59257.1| DNA-directed RNA polymerase, omega subunit [Brucella sp. BO2]
Length = 133
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 74/132 (56%), Positives = 88/132 (66%), Gaps = 10/132 (7%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV+NRF LVLLA HR R +SQGA TVD DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCVDKVENRFELVLLAGHRARQISQGAPITVDRDNDKNPVVALREIADETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPD----------SPTENSDFSWHKPEALSFGQMSEGDLLEG 110
DDL+ED IHSLQKHVE+DEP+ + + ++F +MSE +LL G
Sbjct: 61 DDLKEDLIHSLQKHVEVDEPEAAPAQIANAAEEIAEGIAEAGEEDVVTFDRMSEEELLAG 120
Query: 111 INNIVTPDKRDD 122
I +V P+K DD
Sbjct: 121 IEGLVAPEKNDD 132
>gi|220920085|ref|YP_002495386.1| DNA-directed RNA polymerase subunit omega [Methylobacterium
nodulans ORS 2060]
gi|254809249|sp|B8IT21|RPOZ_METNO RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|219944691|gb|ACL55083.1| DNA-directed RNA polymerase, omega subunit [Methylobacterium
nodulans ORS 2060]
Length = 136
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 70/133 (52%), Positives = 86/133 (64%), Gaps = 11/133 (8%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKV+NRF LVLLA HR R LS GA TVD +DKN VVALREIA T++P
Sbjct: 1 MARVTVEDCIDKVENRFELVLLAGHRARLLSSGAPLTVDRDRDKNPVVALREIADQTITP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPT-----------ENSDFSWHKPEALSFGQMSEGDLLE 109
DDL+E IHSLQK+VE+DEP++ + S + F +MSE DLL
Sbjct: 61 DDLKEQLIHSLQKYVEVDEPEAEAVPLLSSSPAAAAVAPQSSGDDGDIQFDRMSEEDLLR 120
Query: 110 GINNIVTPDKRDD 122
G+ N+ P + +D
Sbjct: 121 GLENLAPPTETED 133
>gi|23501538|ref|NP_697665.1| DNA-directed RNA polymerase subunit omega [Brucella suis 1330]
gi|161618622|ref|YP_001592509.1| DNA-directed RNA polymerase subunit omega [Brucella canis ATCC
23365]
gi|163842923|ref|YP_001627327.1| DNA-directed RNA polymerase subunit omega [Brucella suis ATCC
23445]
gi|254703985|ref|ZP_05165813.1| DNA-directed RNA polymerase subunit omega [Brucella suis bv. 3 str.
686]
gi|260566768|ref|ZP_05837238.1| DNA-directed RNA polymerase subunit omega [Brucella suis bv. 4 str.
40]
gi|261754638|ref|ZP_05998347.1| DNA-directed RNA polymerase subunit omega [Brucella suis bv. 3 str.
686]
gi|32171663|sp|Q8G1Q6|RPOZ_BRUSU RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|189043970|sp|A9MA26|RPOZ_BRUC2 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|189043971|sp|B0CKX7|RPOZ_BRUSI RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|23347448|gb|AAN29580.1| DNA-directed RNA polymerase, omega subunit [Brucella suis 1330]
gi|161335433|gb|ABX61738.1| DNA-directed RNA polymerase, omega subunit [Brucella canis ATCC
23365]
gi|163673646|gb|ABY37757.1| DNA-directed RNA polymerase, omega subunit [Brucella suis ATCC
23445]
gi|260156286|gb|EEW91366.1| DNA-directed RNA polymerase subunit omega [Brucella suis bv. 4 str.
40]
gi|261744391|gb|EEY32317.1| DNA-directed RNA polymerase subunit omega [Brucella suis bv. 3 str.
686]
Length = 133
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 72/131 (54%), Positives = 86/131 (65%), Gaps = 10/131 (7%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV+NRF LVLLA HR R +SQG TVD DKN VVALREIA TLSP
Sbjct: 1 MARVTVEDCVDKVENRFELVLLAGHRARQISQGVPITVDRDNDKNPVVALREIADETLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPD----------SPTENSDFSWHKPEALSFGQMSEGDLLEG 110
DDL+ED IHSLQKHVE+DEP+ + + ++F +MSE +LL G
Sbjct: 61 DDLKEDLIHSLQKHVEVDEPEAAPAQIANAAEEIAEGIAEAGEEDVVTFDRMSEEELLAG 120
Query: 111 INNIVTPDKRD 121
I +V P+K D
Sbjct: 121 IEGLVAPEKND 131
>gi|217977183|ref|YP_002361330.1| DNA-directed RNA polymerase subunit omega [Methylocella silvestris
BL2]
gi|254809250|sp|B8EK21|RPOZ_METSB RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|217502559|gb|ACK49968.1| DNA-directed RNA polymerase, omega subunit [Methylocella silvestris
BL2]
Length = 129
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 68/126 (53%), Positives = 86/126 (68%), Gaps = 4/126 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV+NRF LVLLASHR R ++ GA T+D DKN VV+LREIA TL+P
Sbjct: 1 MARVTVEDCVDKVENRFELVLLASHRARMIAAGAPITIDRDNDKNPVVSLREIADSTLTP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSW----HKPEALSFGQMSEGDLLEGINNIVT 116
DDL+ED I SLQKHVE+DEP+S + S + F +M+E DLL G+ +V
Sbjct: 61 DDLKEDLIQSLQKHVEVDEPESEVVPALSSAPQNPEAIGDIQFDRMTEEDLLRGLEGLVP 120
Query: 117 PDKRDD 122
P + +D
Sbjct: 121 PAETED 126
>gi|170738397|ref|YP_001767052.1| DNA-directed RNA polymerase subunit omega [Methylobacterium sp.
4-46]
gi|226703153|sp|B0UN75|RPOZ_METS4 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|168192671|gb|ACA14618.1| DNA-directed RNA polymerase, omega subunit [Methylobacterium sp.
4-46]
Length = 137
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 69/134 (51%), Positives = 84/134 (62%), Gaps = 12/134 (8%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKV+NRF LVLLA HR R LS GA TVD +DKN VVALREIA T++P
Sbjct: 1 MARVTVEDCIDKVENRFELVLLAGHRARLLSSGAPLTVDRDRDKNPVVALREIADETITP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPT------------ENSDFSWHKPEALSFGQMSEGDLL 108
DDL+E IHSLQK+VE+DEP+ + + F +MSE DLL
Sbjct: 61 DDLKEQLIHSLQKYVEVDEPEPEAVPLLSSSPAAAAVAPQAASGDDNDIQFDRMSEEDLL 120
Query: 109 EGINNIVTPDKRDD 122
G+ N+ P + +D
Sbjct: 121 RGLENLAPPTETED 134
>gi|312114997|ref|YP_004012593.1| DNA-directed RNA polymerase subunit omega [Rhodomicrobium vannielii
ATCC 17100]
gi|311220126|gb|ADP71494.1| DNA-directed RNA polymerase, omega subunit [Rhodomicrobium
vannielii ATCC 17100]
Length = 136
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 62/127 (48%), Positives = 81/127 (63%), Gaps = 9/127 (7%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LVLLA+HR R +S GA T+D DKN VVALREIA T+SP
Sbjct: 1 MARVTVEDCVDKVSNRFELVLLAAHRARAVSAGAPITIDRDNDKNPVVALREIADQTVSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFS---------WHKPEALSFGQMSEGDLLEGI 111
+DL+ED IHSLQ HVE+DEP++ S S + +++E +LL+G+
Sbjct: 61 EDLKEDLIHSLQSHVEVDEPEAEAAPSLPSSRQANVLGPDDQFADQQIDRITEEELLQGL 120
Query: 112 NNIVTPD 118
+ +
Sbjct: 121 ARSIPAE 127
>gi|323137550|ref|ZP_08072627.1| DNA-directed RNA polymerase, omega subunit [Methylocystis sp. ATCC
49242]
gi|322397176|gb|EFX99700.1| DNA-directed RNA polymerase, omega subunit [Methylocystis sp. ATCC
49242]
Length = 129
Score = 129 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 64/126 (50%), Positives = 85/126 (67%), Gaps = 4/126 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDK++NRF LVLLA+HR R +S G + V+ +DKN VVALREIA L+P
Sbjct: 1 MARVTVEDCIDKIENRFDLVLLAAHRARLISSGQQILVERDRDKNPVVALREIAESALAP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDF----SWHKPEALSFGQMSEGDLLEGINNIVT 116
+DL EDFIHSLQ+HVE+DEP++ + + F +M+E DLL G+ +V
Sbjct: 61 EDLSEDFIHSLQRHVEVDEPEAEAAPALTPASGAGDFEGEAQFDRMTEEDLLRGLEGLVP 120
Query: 117 PDKRDD 122
P + +D
Sbjct: 121 PAEVED 126
>gi|296444870|ref|ZP_06886832.1| DNA-directed RNA polymerase, omega subunit [Methylosinus
trichosporium OB3b]
gi|296257538|gb|EFH04603.1| DNA-directed RNA polymerase, omega subunit [Methylosinus
trichosporium OB3b]
Length = 128
Score = 129 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 66/125 (52%), Positives = 84/125 (67%), Gaps = 3/125 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDK++NRF LVLLA+HR R +S G V+ KDKN VVALREIA L+P
Sbjct: 1 MARVTVEDCIDKIENRFDLVLLAAHRARLISSGQSILVERDKDKNPVVALREIAETALAP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKP---EALSFGQMSEGDLLEGINNIVTP 117
DDL+EDFIHSLQ+HVE+DEP++ + F +M+E DLL G+ +V P
Sbjct: 61 DDLKEDFIHSLQRHVEVDEPETEAAPPLSASGADLPEGDAQFDRMTEEDLLRGLEGLVPP 120
Query: 118 DKRDD 122
+ +D
Sbjct: 121 AEVED 125
>gi|163852612|ref|YP_001640655.1| DNA-directed RNA polymerase subunit omega [Methylobacterium
extorquens PA1]
gi|218531453|ref|YP_002422269.1| DNA-directed RNA polymerase subunit omega [Methylobacterium
chloromethanicum CM4]
gi|240139946|ref|YP_002964423.1| DNA-directed RNA polymerase omega chain (RNAP omega subunit)
(Transcriptase omega chain) (RNA polymerase omega
subunit) [Methylobacterium extorquens AM1]
gi|254562371|ref|YP_003069466.1| DNA-directed RNA polymerase omega chain [Methylobacterium
extorquens DM4]
gi|226703150|sp|A9VYZ2|RPOZ_METEP RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|254809248|sp|B7KVD3|RPOZ_METC4 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|163664217|gb|ABY31584.1| DNA-directed RNA polymerase, omega subunit [Methylobacterium
extorquens PA1]
gi|218523756|gb|ACK84341.1| DNA-directed RNA polymerase, omega subunit [Methylobacterium
chloromethanicum CM4]
gi|240009920|gb|ACS41146.1| DNA-directed RNA polymerase omega chain (RNAP omega subunit)
(Transcriptase omega chain) (RNA polymerase omega
subunit) [Methylobacterium extorquens AM1]
gi|254269649|emb|CAX25621.1| DNA-directed RNA polymerase omega chain (RNAP omega subunit)
(Transcriptase omega chain) (RNA polymerase omega
subunit) [Methylobacterium extorquens DM4]
Length = 136
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 66/133 (49%), Positives = 86/133 (64%), Gaps = 11/133 (8%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCI+KV+NRF LVLLASHR R L+ GA TV+ +DKN VVALREI T++
Sbjct: 1 MARVTVEDCIEKVENRFELVLLASHRARLLAAGAPLTVERDRDKNPVVALREIGDETITA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPT-----------ENSDFSWHKPEALSFGQMSEGDLLE 109
+DL+E IHS+QK+VE+DEP++ T + S + + F MSE DLL
Sbjct: 61 EDLKEQLIHSMQKYVEVDEPEAETVPLLSSSPAAAAVAPQSSSDDKNVQFDFMSEEDLLR 120
Query: 110 GINNIVTPDKRDD 122
G+ N+ P + DD
Sbjct: 121 GLENLAPPTETDD 133
>gi|170748313|ref|YP_001754573.1| DNA-directed RNA polymerase subunit omega [Methylobacterium
radiotolerans JCM 2831]
gi|226703152|sp|B1LTE4|RPOZ_METRJ RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|170654835|gb|ACB23890.1| DNA-directed RNA polymerase, omega subunit [Methylobacterium
radiotolerans JCM 2831]
Length = 136
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 68/133 (51%), Positives = 87/133 (65%), Gaps = 11/133 (8%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCI+KV+NRF LVLLASHR R L+ GA T+D +DKN VVALREI T++
Sbjct: 1 MARVTVEDCIEKVENRFELVLLASHRARLLAAGAPLTIDRDRDKNPVVALREIGDETITA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPT-----------ENSDFSWHKPEALSFGQMSEGDLLE 109
DDL+E IHS+QK+VE+DEP++ T + S A+ F +MSE DLL
Sbjct: 61 DDLKEQLIHSMQKYVEVDEPEAETVPLLSSSPAAAAVAPQSSSDDAAVQFDRMSEEDLLR 120
Query: 110 GINNIVTPDKRDD 122
G+ N+ P + DD
Sbjct: 121 GLENLAPPVETDD 133
>gi|146341382|ref|YP_001206430.1| DNA-directed RNA polymerase subunit omega [Bradyrhizobium sp.
ORS278]
gi|148256037|ref|YP_001240622.1| DNA-directed RNA polymerase subunit omega [Bradyrhizobium sp.
BTAi1]
gi|166229349|sp|A5EKM2|RPOZ_BRASB RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|166229350|sp|A4YWD3|RPOZ_BRASO RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|146194188|emb|CAL78209.1| RNA polymerase omega subunit [Bradyrhizobium sp. ORS278]
gi|146408210|gb|ABQ36716.1| DNA-directed RNA polymerase subunit omega [Bradyrhizobium sp.
BTAi1]
Length = 130
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 61/119 (51%), Positives = 81/119 (68%), Gaps = 5/119 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA+HR R +S G++ T+D DKN VVALREIA T+SP
Sbjct: 1 MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTIDRDNDKNPVVALREIADSTISP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTE-----NSDFSWHKPEALSFGQMSEGDLLEGINNI 114
+DL+E+ +HSLQK VE+DEP+ T ++ +M+E +LL+G+ +
Sbjct: 61 EDLKEELVHSLQKFVEVDEPEPDTVPLIGSAGASVDADDTEVAVERMTEEELLKGLEGL 119
>gi|39935758|ref|NP_948034.1| DNA-directed RNA polymerase subunit omega [Rhodopseudomonas
palustris CGA009]
gi|192291345|ref|YP_001991950.1| DNA-directed RNA polymerase subunit omega [Rhodopseudomonas
palustris TIE-1]
gi|81562551|sp|Q6N6C5|RPOZ_RHOPA RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|226703167|sp|B3QJG9|RPOZ_RHOPT RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|39649611|emb|CAE28133.1| RNA polymerase omega subunit [Rhodopseudomonas palustris CGA009]
gi|192285094|gb|ACF01475.1| DNA-directed RNA polymerase, omega subunit [Rhodopseudomonas
palustris TIE-1]
Length = 130
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 60/119 (50%), Positives = 80/119 (67%), Gaps = 5/119 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA+HR R +S G+ T+D DKN VV+LREIA T+SP
Sbjct: 1 MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSPLTIDRDNDKNPVVSLREIADQTISP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTE-----NSDFSWHKPEALSFGQMSEGDLLEGINNI 114
+DL+E+ +HSLQK VE+DEP+ T ++ +M+E +LL+G+ +
Sbjct: 61 EDLKEELVHSLQKFVEVDEPEPDTVPLIGSAGASVDADDTEVAMERMTEEELLKGLEGL 119
>gi|188582634|ref|YP_001926079.1| DNA-directed RNA polymerase subunit omega [Methylobacterium populi
BJ001]
gi|226703151|sp|B1ZJQ8|RPOZ_METPB RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|179346132|gb|ACB81544.1| DNA-directed RNA polymerase, omega subunit [Methylobacterium populi
BJ001]
Length = 136
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 66/133 (49%), Positives = 87/133 (65%), Gaps = 11/133 (8%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCI+KV+NRF LVLLASHR R L+ GA TV+ +DKN VVALREI T++
Sbjct: 1 MARVTVEDCIEKVENRFELVLLASHRARLLAAGAPLTVERDRDKNPVVALREIGDETITA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPT-----------ENSDFSWHKPEALSFGQMSEGDLLE 109
+DL+E IHS+QK+VE+DEP++ T + S + + F +MSE DLL
Sbjct: 61 EDLKEQLIHSMQKYVEVDEPEAETVPLLSSSPAAAAVAPQSSSDDKDVQFDRMSEEDLLR 120
Query: 110 GINNIVTPDKRDD 122
G+ N+ P + DD
Sbjct: 121 GLENLAPPTETDD 133
>gi|209884970|ref|YP_002288827.1| dna-directed rna polymerase omega chain [Oligotropha
carboxidovorans OM5]
gi|226703156|sp|B6JGF6|RPOZ_OLICO RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|209873166|gb|ACI92962.1| dna-directed rna polymerase omega chain [Oligotropha
carboxidovorans OM5]
Length = 130
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 60/119 (50%), Positives = 80/119 (67%), Gaps = 5/119 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA+HR R +S G+ TVD DKN VV+LREIA T++P
Sbjct: 1 MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSPITVDRDNDKNPVVSLREIADQTIAP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTE-----NSDFSWHKPEALSFGQMSEGDLLEGINNI 114
+DL+E+ +HSLQK VE+DEP+ T ++ +M+E +LL+G+ +
Sbjct: 61 EDLKEELVHSLQKFVEVDEPEPDTIPLIGSAGASVDADDTEVAVERMTEEELLKGLEGL 119
>gi|27380177|ref|NP_771706.1| DNA-directed RNA polymerase subunit omega [Bradyrhizobium japonicum
USDA 110]
gi|30179752|sp|Q9RH70|RPOZ_BRAJA RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|27353331|dbj|BAC50331.1| RNA polymerase omega subunit [Bradyrhizobium japonicum USDA 110]
Length = 130
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 61/119 (51%), Positives = 80/119 (67%), Gaps = 5/119 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA+HR R +S G++ TVD DKN VV+LREIA T+SP
Sbjct: 1 MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTVDRDNDKNPVVSLREIADTTISP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTE-----NSDFSWHKPEALSFGQMSEGDLLEGINNI 114
+DL E+ +HSLQK VE+DEP+ T ++ +M+E +LL+G+ +
Sbjct: 61 EDLREELVHSLQKFVEVDEPEPDTVPLIGSAGASVDADDTEVAVERMTEEELLKGLEGL 119
>gi|299135107|ref|ZP_07028298.1| DNA-directed RNA polymerase, omega subunit [Afipia sp. 1NLS2]
gi|298590084|gb|EFI50288.1| DNA-directed RNA polymerase, omega subunit [Afipia sp. 1NLS2]
Length = 130
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 60/119 (50%), Positives = 79/119 (66%), Gaps = 5/119 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA+HR R +S G+ TVD DKN VV+LREIA T++P
Sbjct: 1 MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSPITVDRDNDKNPVVSLREIADQTIAP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTE-----NSDFSWHKPEALSFGQMSEGDLLEGINNI 114
+DL E+ +HSLQK VE+DEP+ T ++ +M+E +LL+G+ +
Sbjct: 61 EDLREELVHSLQKFVEVDEPEPDTIPLIGSAGASVDADDTEVAVERMTEEELLKGLEGL 119
>gi|316934149|ref|YP_004109131.1| DNA-directed RNA polymerase subunit omega [Rhodopseudomonas
palustris DX-1]
gi|315601863|gb|ADU44398.1| DNA-directed RNA polymerase, omega subunit [Rhodopseudomonas
palustris DX-1]
Length = 130
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 60/119 (50%), Positives = 80/119 (67%), Gaps = 5/119 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA+HR R +S G+ T+D DKN VV+LREIA T+SP
Sbjct: 1 MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSPLTIDRDNDKNPVVSLREIADQTISP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTE-----NSDFSWHKPEALSFGQMSEGDLLEGINNI 114
+DL+E+ +HSLQK VE+DEP+ T ++ +M+E +LL+G+ +
Sbjct: 61 EDLKEELVHSLQKFVEVDEPEQDTVPLIGSAGASVDADDTEVAMERMTEEELLKGLEGL 119
>gi|115525033|ref|YP_781944.1| DNA-directed RNA polymerase subunit omega [Rhodopseudomonas
palustris BisA53]
gi|122295828|sp|Q07M70|RPOZ_RHOP5 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|115518980|gb|ABJ06964.1| DNA-directed RNA polymerase, omega subunit [Rhodopseudomonas
palustris BisA53]
Length = 130
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 60/119 (50%), Positives = 80/119 (67%), Gaps = 5/119 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA+HR R +S G++ T+D DKN VV+LREIA T+SP
Sbjct: 1 MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTIDRDNDKNPVVSLREIADQTISP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTE-----NSDFSWHKPEALSFGQMSEGDLLEGINNI 114
+DL E+ +HSLQK VE+DEP+ T ++ +M+E +LL+G+ +
Sbjct: 61 EDLREELVHSLQKFVEVDEPEPDTVPLIGSAGASVDADDTEVAVERMTEEELLKGLEGL 119
>gi|90424133|ref|YP_532503.1| DNA-directed RNA polymerase subunit omega [Rhodopseudomonas
palustris BisB18]
gi|123275197|sp|Q214K2|RPOZ_RHOPB RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|90106147|gb|ABD88184.1| DNA-directed RNA polymerase, omega subunit [Rhodopseudomonas
palustris BisB18]
Length = 130
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 60/119 (50%), Positives = 80/119 (67%), Gaps = 5/119 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA+HR R +S G++ T+D DKN VV+LREIA T+SP
Sbjct: 1 MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTIDRDNDKNPVVSLREIAEETISP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTE-----NSDFSWHKPEALSFGQMSEGDLLEGINNI 114
+DL E+ +HSLQK VE+DEP+ T ++ +M+E +LL+G+ +
Sbjct: 61 EDLREELVHSLQKFVEVDEPEPDTVPLIGSAGASVDADDTEVAPERMTEEELLKGLEGL 119
>gi|86749725|ref|YP_486221.1| DNA-directed RNA polymerase subunit omega [Rhodopseudomonas
palustris HaA2]
gi|123292601|sp|Q2IWV0|RPOZ_RHOP2 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|86572753|gb|ABD07310.1| DNA-directed RNA polymerase, omega subunit [Rhodopseudomonas
palustris HaA2]
Length = 130
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 60/119 (50%), Positives = 81/119 (68%), Gaps = 5/119 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA+HR R +S G++ T+D DKN VV+LREIA T+SP
Sbjct: 1 MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTIDRDNDKNPVVSLREIAEQTVSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTE-----NSDFSWHKPEALSFGQMSEGDLLEGINNI 114
+DL+E+ +HSLQK VE+DEP+ T ++ +M+E +LL+G+ +
Sbjct: 61 EDLKEELVHSLQKFVEVDEPEQDTVPLIGSAGASVDADDTEVALERMTEEELLKGLEGL 119
>gi|91977117|ref|YP_569776.1| DNA-directed RNA polymerase subunit omega [Rhodopseudomonas
palustris BisB5]
gi|123749033|sp|Q136W4|RPOZ_RHOPS RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|91683573|gb|ABE39875.1| DNA-directed RNA polymerase, omega subunit [Rhodopseudomonas
palustris BisB5]
Length = 130
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 60/119 (50%), Positives = 80/119 (67%), Gaps = 5/119 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA+HR R +S G++ T+D DKN VV+LREIA T+SP
Sbjct: 1 MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTIDRDNDKNPVVSLREIAEQTVSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSD-----FSWHKPEALSFGQMSEGDLLEGINNI 114
+DL E+ +HSLQK VE+DEP+ T ++ +M+E +LL+G+ +
Sbjct: 61 EDLREELVHSLQKFVEVDEPEQDTVPLIGSVGASVDADDTEVALERMTEEELLKGLEGL 119
>gi|159042749|ref|YP_001531543.1| DNA-directed RNA polymerase subunit omega [Dinoroseobacter shibae
DFL 12]
gi|189043981|sp|A8LLD2|RPOZ_DINSH RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|157910509|gb|ABV91942.1| DNA-directed RNA polymerase, omega subunit [Dinoroseobacter shibae
DFL 12]
Length = 118
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 53/114 (46%), Positives = 69/114 (60%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R +S G++ T+D DKN VV+LREIA T S
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLAAHRAREISAGSELTIDRDNDKNPVVSLREIAEETQSA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
D L E I S Q +E+DEP+ + +P+ + MSE LL +
Sbjct: 61 DALRERLIESNQTQIEVDEPEEDSMAMLMGGGQPDKPAEDDMSEEKLLRALMEA 114
>gi|197105344|ref|YP_002130721.1| DNA-directed RNA polymerase,omega subunit [Phenylobacterium
zucineum HLK1]
gi|196478764|gb|ACG78292.1| DNA-directed RNA polymerase,omega subunit [Phenylobacterium
zucineum HLK1]
Length = 259
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 49/113 (43%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCI+KV NRF LVLL++HR R +S G++ VD DKN VVALREIA +
Sbjct: 141 MARVTVEDCIEKVPNRFSLVLLSAHRARAISAGSQIMVDRDNDKNPVVALREIAEDVVDA 200
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINN 113
++L+E I +LQ+ E E + E QMSE +L+ + +
Sbjct: 201 EELKETLIGTLQRVDERSEAEEEAETLALLADPTHM----QMSELELVRALQS 249
>gi|85715062|ref|ZP_01046046.1| DNA-directed RNA polymerase omega subunit [Nitrobacter sp. Nb-311A]
gi|85697977|gb|EAQ35850.1| DNA-directed RNA polymerase omega subunit [Nitrobacter sp. Nb-311A]
Length = 130
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 60/119 (50%), Positives = 80/119 (67%), Gaps = 5/119 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA+HR R +S G++ T+D DKN VVALREIA T+SP
Sbjct: 1 MARVTVEDCIDKVDNRFDLVLLAAHRARTISSGSQLTIDRDNDKNPVVALREIAEQTISP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSD-----FSWHKPEALSFGQMSEGDLLEGINNI 114
+D+ E+ +HSLQK VE+DEP+ T ++ +M+E +LL+G+ +
Sbjct: 61 EDMREELVHSLQKFVEVDEPEPDTVPLIGSVGASVDADDTEVAVERMTEEELLKGLEGL 119
>gi|75676114|ref|YP_318535.1| DNA-directed RNA polymerase subunit omega [Nitrobacter winogradskyi
Nb-255]
gi|115305591|sp|Q3SRA8|RPOZ_NITWN RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|74420984|gb|ABA05183.1| DNA-directed RNA polymerase subunit omega [Nitrobacter winogradskyi
Nb-255]
Length = 130
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 61/119 (51%), Positives = 81/119 (68%), Gaps = 5/119 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA+HR R +S G++ T+D DKN VVALREIA T+SP
Sbjct: 1 MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTIDRDNDKNPVVALREIAEQTISP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTE-----NSDFSWHKPEALSFGQMSEGDLLEGINNI 114
+D+ E+ +HSLQK VE+DEP+S T ++ +M+E +LL+G+ +
Sbjct: 61 EDMREELVHSLQKFVEVDEPESDTVPLIGSAGASVDADDTEVAVERMTEEELLKGLEGL 119
>gi|84500568|ref|ZP_00998817.1| DNA-directed RNA polymerase omega subunit [Oceanicola batsensis
HTCC2597]
gi|84391521|gb|EAQ03853.1| DNA-directed RNA polymerase omega subunit [Oceanicola batsensis
HTCC2597]
Length = 119
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 53/114 (46%), Positives = 68/114 (59%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R +S GA+ TVD DKN VV+LREIA T S
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLAAHRAREISAGAQITVDRDNDKNPVVSLREIADETQSA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
D+L E I + Q +E+DEP+ + + + MSE LL +
Sbjct: 61 DELRERLIEANQNQIEVDEPEEDSMALLMGSETADKPAEDDMSEEKLLRALMEA 114
>gi|85705104|ref|ZP_01036204.1| DNA-directed RNA polymerase omega subunit [Roseovarius sp. 217]
gi|85670426|gb|EAQ25287.1| DNA-directed RNA polymerase omega subunit [Roseovarius sp. 217]
Length = 117
Score = 119 bits (300), Expect = 8e-26, Method: Composition-based stats.
Identities = 53/114 (46%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR T EDC+DKV NRF LV+LA+HR R ++ G+ TVD DKN VVALREIA T S
Sbjct: 1 MARVTTEDCVDKVPNRFDLVMLAAHRAREIASGSPLTVDRDNDKNPVVALREIAEETQSA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
DDL E I S Q +E+DEP+ + + MSE LL +
Sbjct: 61 DDLRERLIESNQTQIEVDEPEEDSMALLMGGD-VDKPDTDDMSEEKLLRALMEA 113
>gi|149200813|ref|ZP_01877788.1| DNA-directed RNA polymerase subunit omega [Roseovarius sp. TM1035]
gi|149145146|gb|EDM33172.1| DNA-directed RNA polymerase subunit omega [Roseovarius sp. TM1035]
Length = 117
Score = 119 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 52/114 (45%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR T EDC+DKV NRF LV+LA+HR R ++ G+ TVD DKN VVALREIA T +
Sbjct: 1 MARVTTEDCVDKVPNRFDLVMLAAHRAREIAAGSPLTVDRDNDKNPVVALREIAEETQAA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
DDL E I S Q +E+DEP+ + + + MSE LL +
Sbjct: 61 DDLRERLIESNQTQIEVDEPEEDSMALLMGGD-VDKPNTDDMSEEKLLRALMEA 113
>gi|92117779|ref|YP_577508.1| DNA-directed RNA polymerase subunit omega [Nitrobacter hamburgensis
X14]
gi|123387060|sp|Q1QL49|RPOZ_NITHX RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|91800673|gb|ABE63048.1| DNA-directed RNA polymerase subunit omega [Nitrobacter hamburgensis
X14]
Length = 130
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 59/127 (46%), Positives = 84/127 (66%), Gaps = 5/127 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA+HR R +S G++ T+D DKN VV+LREIA T+SP
Sbjct: 1 MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTIDRDNDKNPVVSLREIAEQTISP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTE-----NSDFSWHKPEALSFGQMSEGDLLEGINNIV 115
+D+ E+ +HSLQK VE+DEP+ T ++ +M+E +LL+G+ +
Sbjct: 61 EDMREELVHSLQKFVEVDEPEPDTVPLIGSAGASVDADDTEVAVERMTEEELLKGLEGLA 120
Query: 116 TPDKRDD 122
+++ +
Sbjct: 121 PREEQPE 127
>gi|114770100|ref|ZP_01447638.1| DNA-directed RNA polymerase omega subunit [alpha proteobacterium
HTCC2255]
gi|114548937|gb|EAU51820.1| DNA-directed RNA polymerase omega subunit [alpha proteobacterium
HTCC2255]
Length = 116
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 51/114 (44%), Positives = 66/114 (57%), Gaps = 2/114 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R +S G++ TV DKN VVALREIA TLS
Sbjct: 1 MARVTVEDCVDKVPNRFDLVMLAAHRAREISSGSEITVPRDNDKNPVVALREIADETLSA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
+L E + S Q +E+DEP+ E M++ +LL +
Sbjct: 61 ANLHEAAVQSYQTQIEVDEPEEDEMALLMGGADDEPD--DGMNDENLLRALMEA 112
>gi|254464302|ref|ZP_05077713.1| DNA-directed RNA polymerase omega chain [Rhodobacterales bacterium
Y4I]
gi|206685210|gb|EDZ45692.1| DNA-directed RNA polymerase omega chain [Rhodobacterales bacterium
Y4I]
Length = 117
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 54/114 (47%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R +S GA TVD DKN VV+LREIA T S
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLAAHRAREISAGAPITVDRDNDKNPVVSLREIAEETQSA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
D+L E I S Q +E+DEP+ + + + MSE LL +
Sbjct: 61 DELRERLIESNQTQIEVDEPEEDSMALLM-GADHDKPAEDDMSEEKLLRALMEA 113
>gi|163738232|ref|ZP_02145648.1| DNA-directed RNA polymerase omega subunit [Phaeobacter
gallaeciensis BS107]
gi|163740170|ref|ZP_02147564.1| DNA-directed RNA polymerase subunit omega [Phaeobacter
gallaeciensis 2.10]
gi|161386028|gb|EDQ10403.1| DNA-directed RNA polymerase subunit omega [Phaeobacter
gallaeciensis 2.10]
gi|161388848|gb|EDQ13201.1| DNA-directed RNA polymerase omega subunit [Phaeobacter
gallaeciensis BS107]
Length = 117
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 53/114 (46%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R +S GA TV+ DKN VV+LREIA T S
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLAAHRAREISAGAALTVERDNDKNPVVSLREIADETQSA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
D L E I S Q +E+DEP+ + + + + MSE LL +
Sbjct: 61 DSLRERLIESNQTQIEVDEPEDDSMALLM-GAENDKPATDDMSEEKLLRALMEA 113
>gi|114764531|ref|ZP_01443756.1| DNA-directed RNA polymerase omega subunit [Pelagibaca bermudensis
HTCC2601]
gi|114543098|gb|EAU46117.1| DNA-directed RNA polymerase omega subunit [Roseovarius sp.
HTCC2601]
Length = 117
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 53/114 (46%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R ++ G+ TVD DKN VVALREIA T S
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLAAHRAREVASGSPLTVDRDNDKNPVVALREIAEETQSA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
D+L E I S Q +E+DEP+ + + + MSE LL +
Sbjct: 61 DELRERLIESHQTQIEVDEPEDDSMALLM-GAEQDKPVEDDMSEEKLLRALMEA 113
>gi|163733869|ref|ZP_02141311.1| DNA-directed RNA polymerase subunit omega [Roseobacter litoralis
Och 149]
gi|161392980|gb|EDQ17307.1| DNA-directed RNA polymerase subunit omega [Roseobacter litoralis
Och 149]
Length = 117
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 54/114 (47%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R +S G+ PTV+ DKN VV+LREIA T S
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLAAHRAREISAGSAPTVNRDNDKNPVVSLREIADETQSA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
DDL E I S Q +E+DEP+ + + MSE LL +
Sbjct: 61 DDLRERLIESNQHQIEVDEPEEDAMALLM-GAEQDKPEEDSMSEEMLLRQLMAA 113
>gi|300023755|ref|YP_003756366.1| DNA-directed RNA polymerase subunit omega [Hyphomicrobium
denitrificans ATCC 51888]
gi|299525576|gb|ADJ24045.1| DNA-directed RNA polymerase, omega subunit [Hyphomicrobium
denitrificans ATCC 51888]
Length = 152
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 52/125 (41%), Positives = 69/125 (55%), Gaps = 9/125 (7%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DK+ NRF LVLLA+HR R ++ G+ T+ DKN V+ALREIA LSP
Sbjct: 1 MARVTVEDCVDKIPNRFELVLLAAHRARAITNGSAITIAPDDDKNPVIALREIAEKMLSP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPD---------SPTENSDFSWHKPEALSFGQMSEGDLLEGI 111
DD+ E I S+QK+ E+DEP+ M+E LL G+
Sbjct: 61 DDMRETLISSIQKNTEVDEPEAVAAPLLPPDRRAPMLGRDDLSTDTQVDVMTEEQLLRGL 120
Query: 112 NNIVT 116
++
Sbjct: 121 ESMTP 125
>gi|149913462|ref|ZP_01901995.1| DNA-directed RNA polymerase, omega subunit [Roseobacter sp.
AzwK-3b]
gi|149812582|gb|EDM72411.1| DNA-directed RNA polymerase, omega subunit [Roseobacter sp.
AzwK-3b]
Length = 119
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 55/115 (47%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR T EDC+DKV NRF LV+LA+HR R +S GA TVD DKN VV+LREIA T S
Sbjct: 1 MARVTTEDCVDKVPNRFELVMLAAHRAREISAGAPITVDRDNDKNPVVSLREIAEETQSA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPE-ALSFGQMSEGDLLEGINNI 114
D+L E I S Q +E+DEP+ + +P+ A + MSE LL +
Sbjct: 61 DELRERLIESNQTQIEVDEPEEDSMALLMGGGEPDRASADDDMSEEKLLRALMEA 115
>gi|254474357|ref|ZP_05087743.1| DNA-directed RNA polymerase omega chain [Ruegeria sp. R11]
gi|214028600|gb|EEB69435.1| DNA-directed RNA polymerase omega chain [Ruegeria sp. R11]
Length = 117
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 54/114 (47%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R +S GA TVD DKN VV+LREIA T S
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLAAHRAREISAGAALTVDRDNDKNPVVSLREIAEETQSA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
D L E I S Q +E+DEP+ + + + MSE LL +
Sbjct: 61 DSLRERLIESNQSQIEVDEPEEDSMALLM-GADNDKPAADDMSEEKLLRALMEA 113
>gi|254462722|ref|ZP_05076138.1| DNA-directed RNA polymerase, omega subunit [Rhodobacterales
bacterium HTCC2083]
gi|206679311|gb|EDZ43798.1| DNA-directed RNA polymerase, omega subunit [Rhodobacteraceae
bacterium HTCC2083]
Length = 117
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 52/114 (45%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R ++ G TVD DKN VV+LREIA T
Sbjct: 1 MARVTVEDCVDKVPNRFDLVMLAAHRAREIAAGGAITVDRDNDKNPVVSLREIADETQLA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
DDL E I S Q +E+DEP+ + + + MSE LL +
Sbjct: 61 DDLRERLIESNQTQIEVDEPEEDAMALLM-GAEADKPAEDDMSEEKLLRALMEA 113
>gi|154253307|ref|YP_001414131.1| DNA-directed RNA polymerase subunit omega [Parvibaculum
lavamentivorans DS-1]
gi|171769659|sp|A7HX41|RPOZ_PARL1 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|154157257|gb|ABS64474.1| DNA-directed RNA polymerase, omega subunit [Parvibaculum
lavamentivorans DS-1]
Length = 141
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 59/124 (47%), Positives = 72/124 (58%), Gaps = 9/124 (7%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LVLLA HR R +S GA+ TVD DKN VVALREIA T+ P
Sbjct: 1 MARVTVEDCVDKVPNRFELVLLAGHRARAMSAGAELTVDRDNDKNPVVALREIADRTIMP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSF---------GQMSEGDLLEGI 111
+DL E+ I S+Q VE +EP+ S + +MSE DLL I
Sbjct: 61 EDLREELIGSMQSRVETEEPEVEQMQLLMSGEAAGEVKDTFGAAEGGGERMSEEDLLRAI 120
Query: 112 NNIV 115
+ +
Sbjct: 121 QSQI 124
>gi|254437152|ref|ZP_05050646.1| DNA-directed RNA polymerase, omega subunit, putative
[Octadecabacter antarcticus 307]
gi|198252598|gb|EDY76912.1| DNA-directed RNA polymerase, omega subunit, putative
[Octadecabacter antarcticus 307]
Length = 120
Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 52/116 (44%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R +S G TV DKN VV+LREIA T +
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLAAHRAREISAGGALTVPRDNDKNPVVSLREIAEETQTA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEAL--SFGQMSEGDLLEGINNI 114
DL E I + Q +E+DEP+ + PEA + +SE LL +
Sbjct: 61 ADLRERMIEANQTQIEVDEPEEDSMALLMGGGSPEADKPADDDLSEEKLLRALMEA 116
>gi|260432749|ref|ZP_05786720.1| dna-directed rna polymerase subunit omega [Silicibacter
lacuscaerulensis ITI-1157]
gi|260416577|gb|EEX09836.1| dna-directed rna polymerase subunit omega [Silicibacter
lacuscaerulensis ITI-1157]
Length = 117
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 53/114 (46%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R +S GA TVD DKN VVALREIA T +
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLAAHRAREISAGAPITVDRDNDKNPVVALREIAEETQTA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
D+L E I + Q +E+DEP+ + + + MSE LL +
Sbjct: 61 DELRERLIEANQTQIEVDEPEEDQMALLM-GAESDKPADDDMSEEKLLRALMEA 113
>gi|114570126|ref|YP_756806.1| DNA-directed RNA polymerase subunit omega [Maricaulis maris MCS10]
gi|122315955|sp|Q0APB9|RPOZ_MARMM RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|114340588|gb|ABI65868.1| DNA-directed RNA polymerase subunit omega [Maricaulis maris MCS10]
Length = 123
Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats.
Identities = 44/113 (38%), Positives = 69/113 (61%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCI+K+ NRF LVL+A+HR R++S G++ T+D DKN VVALREIA TL
Sbjct: 1 MARVTVEDCIEKIPNRFRLVLMAAHRARNISAGSELTIDRDNDKNPVVALREIADETLDM 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINN 113
D L++ ++ LQ+ + ++ + + ++ E ++L+ + N
Sbjct: 61 DSLKDSLVNGLQRVLPSEDEEDAAREERGQQMEALPAPPVELDEAEMLKALQN 113
>gi|254487244|ref|ZP_05100449.1| DNA-directed RNA polymerase, omega subunit [Roseobacter sp. GAI101]
gi|214044113|gb|EEB84751.1| DNA-directed RNA polymerase, omega subunit [Roseobacter sp. GAI101]
Length = 117
Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats.
Identities = 53/114 (46%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R ++ G+ TVD DKN VV+LREIA T S
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLAAHRAREIAAGSPVTVDRDNDKNPVVSLREIADETQSA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
DDL E I S Q +E+DEP+ + + MSE LL +
Sbjct: 61 DDLRERLIESNQNQIEVDEPEEDAMALLMGGEQ-DKPEEDSMSEEMLLRQLMAA 113
>gi|126726101|ref|ZP_01741943.1| DNA-directed RNA polymerase subunit omega [Rhodobacterales
bacterium HTCC2150]
gi|126705305|gb|EBA04396.1| DNA-directed RNA polymerase subunit omega [Rhodobacterales
bacterium HTCC2150]
Length = 117
Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats.
Identities = 52/114 (45%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DK+ NRF LV+LA+HR R +S G+ TVD DKN VV+LREIA T S
Sbjct: 1 MARVTVEDCVDKIPNRFDLVMLAAHRAREISAGSTITVDRDNDKNPVVSLREIADETQSA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
DL E I S Q +E+DEP+ + + + MSE LL +
Sbjct: 61 ADLRERMIESNQTQIEVDEPEEDAMALLM-GVEADKPAEDDMSEEKLLRALMEA 113
>gi|163744862|ref|ZP_02152222.1| DNA-directed RNA polymerase subunit omega [Oceanibulbus indolifex
HEL-45]
gi|161381680|gb|EDQ06089.1| DNA-directed RNA polymerase subunit omega [Oceanibulbus indolifex
HEL-45]
Length = 117
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 53/114 (46%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R ++ G+ TVD DKN VV+LREIA T S
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLAAHRAREIAAGSPLTVDRDNDKNPVVSLREIADETQSA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
DDL E I S Q +E+DEP+ + + MSE LL +
Sbjct: 61 DDLRERLIESNQNQIEVDEPEEDAMALLM-GAEQDKPEEDSMSEEMLLRQLMAA 113
>gi|99082406|ref|YP_614560.1| DNA-directed RNA polymerase subunit omega [Ruegeria sp. TM1040]
gi|259417138|ref|ZP_05741057.1| dna-directed rna polymerase subunit omega [Silicibacter sp.
TrichCH4B]
gi|123378673|sp|Q1GDG8|RPOZ_SILST RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|99038686|gb|ABF65298.1| DNA-directed RNA polymerase omega subunit [Ruegeria sp. TM1040]
gi|259346044|gb|EEW57858.1| dna-directed rna polymerase subunit omega [Silicibacter sp.
TrichCH4B]
Length = 117
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 54/114 (47%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R +S GA+ TVD DKN VV+LREIA T S
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLAAHRAREISAGAELTVDRDNDKNPVVSLREIAEETQSA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
D L E I S Q +E+DEP+ + + + MSE LL +
Sbjct: 61 DALRERLIESNQSQIEVDEPEEDSMALLMGG-EADKPQEDDMSEEKLLRALMEA 113
>gi|254454909|ref|ZP_05068346.1| DNA-directed RNA polymerase omega chain [Octadecabacter antarcticus
238]
gi|198269315|gb|EDY93585.1| DNA-directed RNA polymerase omega chain [Octadecabacter antarcticus
238]
Length = 120
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 49/116 (42%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R +S G+ TV DKN VV+LREIA T +
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLAAHRAREISAGSALTVPRDNDKNPVVSLREIAEETQTV 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSW--HKPEALSFGQMSEGDLLEGINNI 114
DL E I + Q +E+DEP+ + + + + +SE LL +
Sbjct: 61 ADLRERMIEANQTQIEVDEPEEDSMALLMGGGSAEADKPAEDDLSEEKLLRALMEA 116
>gi|260427382|ref|ZP_05781361.1| dna-directed rna polymerase subunit omega [Citreicella sp. SE45]
gi|260421874|gb|EEX15125.1| dna-directed rna polymerase subunit omega [Citreicella sp. SE45]
Length = 117
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 54/114 (47%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R +S G+ TVD DKN VVALREIA T S
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLAAHRAREVSAGSPITVDRDNDKNPVVALREIAEETQSA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
D+L E I S Q +E+DEP+ + + + + MSE LL +
Sbjct: 61 DELRERLIESHQTQIEVDEPEEDSMALLM-GAEQDKPADDDMSEEKLLRALMEA 113
>gi|77462214|ref|YP_351718.1| DNA-directed RNA polymerase subunit omega [Rhodobacter sphaeroides
2.4.1]
gi|126461076|ref|YP_001042190.1| DNA-directed RNA polymerase subunit omega [Rhodobacter sphaeroides
ATCC 17029]
gi|221641168|ref|YP_002527430.1| DNA-directed RNA polymerase subunit omega [Rhodobacter sphaeroides
KD131]
gi|332560095|ref|ZP_08414417.1| DNA-directed RNA polymerase subunit omega [Rhodobacter sphaeroides
WS8N]
gi|124028623|sp|Q3J5W7|RPOZ_RHOS4 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|166230350|sp|A3PGF2|RPOZ_RHOS1 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|254809256|sp|B9KSA1|RPOZ_RHOSK RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|77386632|gb|ABA77817.1| RNA polymerase omega subunit [Rhodobacter sphaeroides 2.4.1]
gi|126102740|gb|ABN75418.1| DNA-directed RNA polymerase, omega subunit [Rhodobacter sphaeroides
ATCC 17029]
gi|221161949|gb|ACM02929.1| DNA-directed RNA polymerase subunit omega [Rhodobacter sphaeroides
KD131]
gi|332277807|gb|EGJ23122.1| DNA-directed RNA polymerase subunit omega [Rhodobacter sphaeroides
WS8N]
Length = 117
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 51/114 (44%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R ++ G+ T+D DKN VVALREIA T S
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLAAHRAREIASGSSLTIDRDNDKNPVVALREIAEETQSA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
+ L E I S Q +E+DEP+ + + MSE LL +
Sbjct: 61 ESLRERMIESHQTQIEVDEPEEDQMALLM-GSEVDRPVQDDMSEEKLLRALMEA 113
>gi|288958018|ref|YP_003448359.1| DNA-directed RNA polymerase subunit omega [Azospirillum sp. B510]
gi|288910326|dbj|BAI71815.1| DNA-directed RNA polymerase subunit omega [Azospirillum sp. B510]
Length = 144
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 51/112 (45%), Positives = 63/112 (56%), Gaps = 6/112 (5%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ KV NRF LV++A+ R R ++ GA ++D DKN VVALREIA T+S
Sbjct: 1 MARVTVEDCVLKVPNRFELVMMAAQRAREVASGAPLSIDRDNDKNPVVALREIADETVSL 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPT------ENSDFSWHKPEALSFGQMSEGD 106
D L+ I QKHVE DEP+ EN + MSE D
Sbjct: 61 DYLKNALIKGHQKHVEPDEPEDEIVELMAGENDWAARGNASLGDEDGMSESD 112
>gi|254512476|ref|ZP_05124543.1| DNA-directed RNA polymerase, omega subunit [Rhodobacteraceae
bacterium KLH11]
gi|221536187|gb|EEE39175.1| DNA-directed RNA polymerase, omega subunit [Rhodobacteraceae
bacterium KLH11]
Length = 117
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 53/114 (46%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R +S GA TVD DKN VV+LREIA T
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLAAHRAREISAGASITVDRDNDKNPVVSLREIADETQGA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
DDL E I + Q +E+DEP+ + + + MSE LL +
Sbjct: 61 DDLRERLIEANQTQIEVDEPEEDQMALLM-GAESDKPADDDMSEEKLLRALMEA 113
>gi|146278611|ref|YP_001168770.1| DNA-directed RNA polymerase subunit omega [Rhodobacter sphaeroides
ATCC 17025]
gi|166230351|sp|A4WVQ1|RPOZ_RHOS5 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|145556852|gb|ABP71465.1| DNA-directed RNA polymerase, omega subunit [Rhodobacter sphaeroides
ATCC 17025]
Length = 117
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 51/114 (44%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R ++ G+ T+D DKN VVALREIA T S
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLAAHRAREIASGSALTIDRDNDKNPVVALREIAEETQSA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
+ L E I S Q +E+DEP+ + + MSE LL +
Sbjct: 61 ESLRERMIESHQTQIEVDEPEEDQMALLM-GSEVDRPVQDDMSEEKLLRALMEA 113
>gi|110678679|ref|YP_681686.1| DNA-directed RNA polymerase subunit omega [Roseobacter
denitrificans OCh 114]
gi|123172752|sp|Q16AJ3|RPOZ_ROSDO RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|109454795|gb|ABG31000.1| DNA-directed RNA polymerase, omega subunit [Roseobacter
denitrificans OCh 114]
Length = 117
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 53/114 (46%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R +S G+ PTV+ DKN V+LREIA T S
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLAAHRAREISAGSAPTVNRDNDKNPAVSLREIAEETQSA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
DDL E I S Q +E+DEP+ + + MSE LL +
Sbjct: 61 DDLRERLIESNQHQIEVDEPEEDAMALLM-GAEQDKPEEDSMSEEMLLRQLMAA 113
>gi|83951637|ref|ZP_00960369.1| DNA-directed RNA polymerase omega subunit [Roseovarius nubinhibens
ISM]
gi|83836643|gb|EAP75940.1| DNA-directed RNA polymerase omega subunit [Roseovarius nubinhibens
ISM]
Length = 117
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 52/114 (45%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR T EDC+DKV NRF LV+LA+HR R +S G+ TVD DKN VVALREIA T S
Sbjct: 1 MARVTTEDCVDKVPNRFDLVMLAAHRAREISAGSPLTVDRDNDKNPVVALREIADETQSA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
++L E I S Q +E+DEP+ + + + MSE LL +
Sbjct: 61 EELRERLIESNQTEIEVDEPEEDSMALLMGG-EADKPQEDDMSEEKLLRALMEA 113
>gi|89070107|ref|ZP_01157437.1| DNA-directed RNA polymerase omega subunit [Oceanicola granulosus
HTCC2516]
gi|89044328|gb|EAR50471.1| DNA-directed RNA polymerase omega subunit [Oceanicola granulosus
HTCC2516]
Length = 119
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 54/115 (46%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R +S G+ TVD DKN VVALREIA T
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLAAHRAREVSAGSPLTVDRDNDKNPVVALREIAEETQQA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKP-EALSFGQMSEGDLLEGINNI 114
DDL E I + Q +E+DEP+ +P + + MSE LL +
Sbjct: 61 DDLRERMIEANQTQIEVDEPEDDAMALLMGASEPADKPAEDDMSEEKLLRALMEA 115
>gi|71083885|ref|YP_266605.1| DNA-directed RNA polymerase subunit omega (RNAP omega subunit)
[Candidatus Pelagibacter ubique HTCC1062]
gi|115305594|sp|Q4FLD7|RPOZ_PELUB RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|71062998|gb|AAZ22001.1| DNA-directed RNA polymerase omega chain (RNAP omega subunit)
[Candidatus Pelagibacter ubique HTCC1062]
Length = 180
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/120 (41%), Positives = 73/120 (60%), Gaps = 8/120 (6%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKV++ + LVL+A R L+ G +PT+D DKNTV++LREIA+ T+
Sbjct: 1 MARVTVEDCIDKVESPYELVLVAKERAVQLNSGLEPTLDRDNDKNTVISLREIAADTIKV 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNIVTPDKR 120
DL + IH L+KHVE + D T++ + E++ G++S+ + P KR
Sbjct: 61 SDLTDSAIHKLRKHVE--QVDDGTDDDEIIGDDFESMYKGEISKSG------TPILPSKR 112
>gi|89053004|ref|YP_508455.1| DNA-directed RNA polymerase subunit omega [Jannaschia sp. CCS1]
gi|123094399|sp|Q28V32|RPOZ_JANSC RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|88862553|gb|ABD53430.1| DNA-directed RNA polymerase subunit omega [Jannaschia sp. CCS1]
Length = 117
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 52/114 (45%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LASHR R ++ G T+D DKN VV+LREIA T S
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLASHRAREIAAGDPLTIDRDNDKNPVVSLREIADETQSA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
DDL E I S Q +E+DEP+ + + + MSE +L +
Sbjct: 61 DDLRERLIESHQTQIEVDEPEEDAMA-LLQGVEQDRPAQDDMSEEQMLRALMEA 113
>gi|91763045|ref|ZP_01265009.1| DNA-directed RNA polymerase omega chain (RNAP omega subunit)
[Candidatus Pelagibacter ubique HTCC1002]
gi|91717458|gb|EAS84109.1| DNA-directed RNA polymerase omega chain (RNAP omega subunit)
[Candidatus Pelagibacter ubique HTCC1002]
Length = 180
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/120 (41%), Positives = 73/120 (60%), Gaps = 8/120 (6%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKV++ + LVL+A R L+ G +PT+D DKNTV++LREIA+ T+
Sbjct: 1 MARVTVEDCIDKVESPYELVLVAKERAVQLNSGLEPTLDRDNDKNTVISLREIAADTIKV 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNIVTPDKR 120
DL + IH L+KHVE + D T++ + E++ G++S+ + P KR
Sbjct: 61 SDLTDSAIHKLRKHVE--QVDDGTDDDEIIGDDFESMYKGEISKSG------TPILPSKR 112
>gi|126728511|ref|ZP_01744327.1| DNA-directed RNA polymerase subunit omega [Sagittula stellata E-37]
gi|126711476|gb|EBA10526.1| DNA-directed RNA polymerase subunit omega [Sagittula stellata E-37]
Length = 117
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 55/114 (48%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R +S GA TVD DKN VVALREIA T S
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLAAHRAREVSAGAAITVDRDNDKNPVVALREIAEETQSA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
D+L E I S Q +E+DEP+ + + MSE LL +
Sbjct: 61 DELRERLIESNQTQIEVDEPEDDAMALLM-GAEQDKPQEDDMSEEKLLRALMEA 113
>gi|126739730|ref|ZP_01755422.1| DNA-directed RNA polymerase subunit omega [Roseobacter sp.
SK209-2-6]
gi|126719376|gb|EBA16086.1| DNA-directed RNA polymerase subunit omega [Roseobacter sp.
SK209-2-6]
Length = 117
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 53/114 (46%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R +S GA+ TV+ DKN VV+LREIA T S
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLAAHRAREISAGAELTVERDNDKNPVVSLREIADETQSA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
D+L E I S Q +E+DEP+ + + + MSE LL +
Sbjct: 61 DELRERLIESNQTQIEVDEPEEDSMALLM-GAENDKPVEDDMSEEKLLRALMEA 113
>gi|126733747|ref|ZP_01749494.1| DNA-directed RNA polymerase subunit omega [Roseobacter sp. CCS2]
gi|126716613|gb|EBA13477.1| DNA-directed RNA polymerase subunit omega [Roseobacter sp. CCS2]
Length = 117
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 52/114 (45%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R +S GA TV DKN VV+LREIA T
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLAAHRAREISSGAPITVSRDNDKNPVVSLREIAEETQQA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
DL E I + Q +E+DEP+ + S + + + MSE LL + +
Sbjct: 61 ADLRERMIEANQTQIEVDEPEEDSM-SLLMGAETDKPAEDDMSEEKLLRALMDA 113
>gi|56698036|ref|YP_168407.1| DNA-directed RNA polymerase subunit omega [Ruegeria pomeroyi DSS-3]
gi|81558328|sp|Q5LNK0|RPOZ_SILPO RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|56679773|gb|AAV96439.1| DNA-directed RNA polymerase, omega subunit [Ruegeria pomeroyi
DSS-3]
Length = 117
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 55/114 (48%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LVLLA+HR R +S GA TVD DKN VV+LREIA T S
Sbjct: 1 MARVTVEDCVDKVPNRFELVLLAAHRAREISAGAAITVDRDNDKNPVVSLREIADETQSA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
DDL E I + Q +E+DEP+ + + MSE LL +
Sbjct: 61 DDLRERLIEANQTQIEVDEPEEDQMALLM-GAESDRPVEDDMSEERLLRALMEA 113
>gi|289608489|emb|CBI60584.1| unnamed protein product [Sordaria macrospora]
Length = 114
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 59/94 (62%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DK+ NRF LVL+A+ R R +S GA+ T+D +DKN VVALREIA ++P
Sbjct: 1 MARVTVEDCVDKIPNRFDLVLMAAQRARQISGGAELTLDRDRDKNPVVALREIAEENITP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKP 94
D L E I S+QK DE S + +
Sbjct: 61 DHLRESVITSMQKVQIDDEEAPDELGSLAASAEA 94
>gi|84684015|ref|ZP_01011917.1| DNA-directed RNA polymerase omega subunit [Maritimibacter
alkaliphilus HTCC2654]
gi|84667768|gb|EAQ14236.1| DNA-directed RNA polymerase omega subunit [Rhodobacterales
bacterium HTCC2654]
Length = 118
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 52/114 (45%), Positives = 65/114 (57%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R +S G TVD DKN VVALREIA T +
Sbjct: 1 MARVTVEDCVDKVPNRFDLVMLAAHRAREISSGGALTVDRDNDKNPVVALREIAEETQTA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
D+L E I S Q +E+DEP+ P+ M++ LL +
Sbjct: 61 DELTERMIESNQTQIEVDEPEDDQMALLMGQETPDKPDDDDMTDEKLLRALMEA 114
>gi|255261391|ref|ZP_05340733.1| dna-directed rna polymerase subunit omega [Thalassiobium sp. R2A62]
gi|255103726|gb|EET46400.1| dna-directed rna polymerase subunit omega [Thalassiobium sp. R2A62]
Length = 117
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 52/114 (45%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R +S GA TVD DKN VV+LREIA T +
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLAAHRAREISTGAPLTVDRDNDKNPVVSLREIADETQAA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
DDL E I + Q+ +E+DEP+ + + + MSE +L +
Sbjct: 61 DDLRERMIEANQRQIEVDEPEEDAMALLM-GAETDKPAEDDMSEEKMLRALMEA 113
>gi|86137268|ref|ZP_01055846.1| DNA-directed RNA polymerase omega subunit [Roseobacter sp. MED193]
gi|85826592|gb|EAQ46789.1| DNA-directed RNA polymerase omega subunit [Roseobacter sp. MED193]
Length = 117
Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats.
Identities = 51/114 (44%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R ++ GA+ TV+ DKN VV+LREIA T
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLAAHRAREIAAGAELTVERDNDKNPVVSLREIADETQRA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
DDL E I + Q +E+DEP+ + + + + MSE LL +
Sbjct: 61 DDLRERLIENNQNQIEVDEPEEDSMALLM-GAENDKPADDDMSEEKLLRALMEA 113
>gi|83855033|ref|ZP_00948563.1| DNA-directed RNA polymerase omega subunit [Sulfitobacter sp.
NAS-14.1]
gi|83941556|ref|ZP_00954018.1| DNA-directed RNA polymerase omega subunit [Sulfitobacter sp. EE-36]
gi|83842876|gb|EAP82043.1| DNA-directed RNA polymerase omega subunit [Sulfitobacter sp.
NAS-14.1]
gi|83847376|gb|EAP85251.1| DNA-directed RNA polymerase omega subunit [Sulfitobacter sp. EE-36]
Length = 117
Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats.
Identities = 52/114 (45%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R ++ G+ TVD DKN VV+LREIA T S
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLAAHRAREIAAGSTVTVDRDNDKNPVVSLREIADETQSA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
D+L E I S Q +E+DEP+ + + MSE LL +
Sbjct: 61 DELRERLIESNQNQIEVDEPEEDAMALLM-GAEQDKPEEDSMSEEMLLRQLMAA 113
>gi|103487087|ref|YP_616648.1| DNA-directed RNA polymerase subunit omega [Sphingopyxis
alaskensis RB2256]
gi|123253213|sp|Q1GSQ7|RPOZ_SPHAL RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|98977164|gb|ABF53315.1| DNA-directed RNA polymerase, omega subunit [Sphingopyxis
alaskensis RB2256]
Length = 114
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 49/94 (52%), Positives = 61/94 (64%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LVLL++HR R +S G++ TVD +DKN VVALREIA T+ P
Sbjct: 1 MARVTVEDCVDKVPNRFDLVLLSAHRAREISGGSELTVDRDRDKNPVVALREIAEQTIRP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKP 94
DL E + SLQK V D+ +S +
Sbjct: 61 KDLHEALVGSLQKVVIDDDDTPDEISSISRSAEA 94
>gi|254455622|ref|ZP_05069051.1| dna-directed rna polymerase omega subunit [Candidatus Pelagibacter
sp. HTCC7211]
gi|207082624|gb|EDZ60050.1| dna-directed rna polymerase omega subunit [Candidatus Pelagibacter
sp. HTCC7211]
Length = 171
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 46/120 (38%), Positives = 69/120 (57%), Gaps = 8/120 (6%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKV++ + LVL+A R L+ G +P +D DKNTV++LREIA +
Sbjct: 1 MARVTVEDCIDKVESPYELVLVAKERATQLNSGIEPLLDRDNDKNTVISLREIAEKKIKV 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNIVTPDKR 120
DL E ++ L+KHVE + D +++ + E + G++S+ + P KR
Sbjct: 61 SDLTESAVYKLRKHVE--QVDDGSDDDEEIGDDFENMYKGEISKSG------TPILPSKR 112
>gi|315499952|ref|YP_004088755.1| DNA-directed RNA polymerase, omega subunit [Asticcacaulis
excentricus CB 48]
gi|315417964|gb|ADU14604.1| DNA-directed RNA polymerase, omega subunit [Asticcacaulis
excentricus CB 48]
Length = 119
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 53/113 (46%), Positives = 65/113 (57%), Gaps = 4/113 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++KVDNRF LVLLA+HR R +S GA +D DKN VVALREIA L P
Sbjct: 1 MARVTVEDCVEKVDNRFNLVLLAAHRARAISSGASILLDRDNDKNPVVALREIAEDKLPP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINN 113
+ L E I SLQ+ E E + E QMSE +L+ + +
Sbjct: 61 ESLTESLIASLQRVDERTEAEEEAETLALLADPQHQ----QMSESELIRALQS 109
>gi|329890086|ref|ZP_08268429.1| DNA-directed RNA polymerase, omega subunit [Brevundimonas diminuta
ATCC 11568]
gi|328845387|gb|EGF94951.1| DNA-directed RNA polymerase, omega subunit [Brevundimonas diminuta
ATCC 11568]
Length = 119
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 4/113 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCI+KV NRF LVLLA HR R+++ GA T+D DKN VVALRE+A T++P
Sbjct: 1 MARVTVEDCIEKVPNRFGLVLLAGHRARNIANGAPLTLDRDNDKNPVVALRELAEDTVTP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINN 113
D+L E+ I +LQ+ E E + E M+E +L+ + +
Sbjct: 61 DELRENIITTLQRVDERTEAEDEAEVVALLAEPQHM----NMAEAELIRALQS 109
>gi|85709472|ref|ZP_01040537.1| DNA-directed RNA polymerase omega subunit [Erythrobacter sp.
NAP1]
gi|85688182|gb|EAQ28186.1| DNA-directed RNA polymerase omega subunit [Erythrobacter sp.
NAP1]
Length = 114
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 60/94 (63%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LVLLA+ R R +S G++ T+D +DKN VVALREIA T+ P
Sbjct: 1 MARVTVEDCVDKVPNRFDLVLLAAQRAREISGGSELTLDRDRDKNPVVALREIAEQTIKP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKP 94
+L E + LQK + DE D+ S +
Sbjct: 61 KELHESLVTGLQKILPDDEDDADEIGSLSQSAEA 94
>gi|84515157|ref|ZP_01002520.1| DNA-directed RNA polymerase omega subunit [Loktanella vestfoldensis
SKA53]
gi|84511316|gb|EAQ07770.1| DNA-directed RNA polymerase omega subunit [Loktanella vestfoldensis
SKA53]
Length = 117
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 52/114 (45%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R ++ G+ TV DKN VV+LREIA T
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLAAHRAREIAAGSPITVARDNDKNPVVSLREIAEETQQA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
DDL E I + Q +EIDEP+ + S + + MSE LL +
Sbjct: 61 DDLRERMIEANQTQIEIDEPEEDSM-SLLMGAEADRPVEDDMSEEKLLRALMEA 113
>gi|87198167|ref|YP_495424.1| DNA-directed RNA polymerase subunit omega [Novosphingobium
aromaticivorans DSM 12444]
gi|115305592|sp|Q2GC33|RPOZ_NOVAD RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|87133848|gb|ABD24590.1| DNA-directed RNA polymerase subunit omega [Novosphingobium
aromaticivorans DSM 12444]
Length = 114
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 48/94 (51%), Positives = 61/94 (64%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LVLLA+ R R +S GA+ TVD +DKN VVALREIA T+ P
Sbjct: 1 MARVTVEDCVDKVPNRFDLVLLAAERARAISGGAELTVDRDRDKNPVVALREIAEETVRP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKP 94
L+E+ I SLQ+ + D+ + S +
Sbjct: 61 AVLKENLIQSLQRVLPDDDDEVDEIGSLSQSAEA 94
>gi|304321227|ref|YP_003854870.1| DNA-directed RNA polymerase subunit omega [Parvularcula bermudensis
HTCC2503]
gi|303300129|gb|ADM09728.1| DNA-directed RNA polymerase omega subunit [Parvularcula bermudensis
HTCC2503]
Length = 121
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 51/113 (45%), Positives = 70/113 (61%), Gaps = 3/113 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA+HR R ++ G+ V+ +DKN VVALRE+A ++
Sbjct: 1 MARVTVEDCIDKVDNRFDLVLLAAHRARLIAAGSPVEVERERDKNPVVALRELADDKITA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINN 113
L ED + SLQ +++DEP+ + PE +SE +LL+ +
Sbjct: 61 KALTEDLVTSLQTQLDMDEPEEAEGAAADKADLPEH---DTVSEDELLKALQQ 110
>gi|126666528|ref|ZP_01737506.1| RNA polymerase omega subunit [Marinobacter sp. ELB17]
gi|126628916|gb|EAZ99535.1| RNA polymerase omega subunit [Marinobacter sp. ELB17]
Length = 91
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 38/68 (55%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQ-GAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ VDNRF LV+LA+ R R ++ GA+P V DK TV+ALREIA+G +S
Sbjct: 22 MARVTVEDCLEHVDNRFQLVMLATKRARQIATKGAEPMVPPENDKPTVIALREIAAGLVS 81
Query: 60 PDDLEEDF 67
L ED
Sbjct: 82 RSLLTEDL 89
>gi|163793039|ref|ZP_02187015.1| RNA polymerase, omega subunit [alpha proteobacterium BAL199]
gi|159181685|gb|EDP66197.1| RNA polymerase, omega subunit [alpha proteobacterium BAL199]
Length = 145
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 44/92 (47%), Positives = 57/92 (61%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCI ++ NRF LV+ A+ R R +S G+ TVD DK+ VV+LREIA T++
Sbjct: 1 MARVTVEDCIVQIPNRFDLVMAAAQRARDISAGSAITVDRDNDKDPVVSLREIADQTVNA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWH 92
L+E I LQKHVE+DEP+
Sbjct: 61 AVLQESLIKGLQKHVEVDEPEDDDLERLIGNE 92
>gi|254418276|ref|ZP_05032000.1| DNA-directed RNA polymerase, omega subunit, putative [Brevundimonas
sp. BAL3]
gi|196184453|gb|EDX79429.1| DNA-directed RNA polymerase, omega subunit, putative [Brevundimonas
sp. BAL3]
Length = 119
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 50/113 (44%), Positives = 65/113 (57%), Gaps = 4/113 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCI+KV NRF LVL+A HR R ++ GA T+D DKN VVALREIA T+ P
Sbjct: 1 MARVTVEDCIEKVPNRFGLVLMAGHRARSIANGAALTIDRDNDKNPVVALREIADDTVVP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINN 113
D+L E I +LQ+ E E + E M+E +L+ + +
Sbjct: 61 DELRETIITTLQRVDERTEAEDEAETVALLAEPQHM----NMAEAELIRALQS 109
>gi|294678834|ref|YP_003579449.1| DNA-directed RNA polymerase omega subunit [Rhodobacter capsulatus
SB 1003]
gi|294477654|gb|ADE87042.1| DNA-directed RNA polymerase, omega subunit [Rhodobacter capsulatus
SB 1003]
Length = 117
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 52/114 (45%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R ++ GA TV+ DKN VVALREIA T
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLAAHRAREVAAGAPITVERDNDKNPVVALREIADETQLA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
DDL E I S Q +E+DEP+ S + + M E +L + +
Sbjct: 61 DDLRERLIESNQTQIEVDEPEEDAMALLMSG-EIDRPRVDDMDEERMLRALMDA 113
>gi|83593192|ref|YP_426944.1| DNA-directed RNA polymerase subunit omega [Rhodospirillum rubrum
ATCC 11170]
gi|118587617|sp|Q2RT88|RPOZ_RHORT RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|83576106|gb|ABC22657.1| RNA polymerase, omega subunit [Rhodospirillum rubrum ATCC 11170]
Length = 138
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 48/84 (57%), Positives = 58/84 (69%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ K+ NRF LVL+A R R +S G+ TVD DKN VV+LREIA GT+
Sbjct: 1 MARVTVEDCVLKIPNRFELVLVAGQRARDISAGSALTVDRDNDKNPVVSLREIADGTVDI 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPT 84
+L+E I LQKHVEIDEP+
Sbjct: 61 PNLKEAVIQGLQKHVEIDEPEEDD 84
>gi|332188778|ref|ZP_08390489.1| DNA-directed RNA polymerase, omega subunit [Sphingomonas sp. S17]
gi|332011177|gb|EGI53271.1| DNA-directed RNA polymerase, omega subunit [Sphingomonas sp. S17]
Length = 114
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 48/94 (51%), Positives = 60/94 (63%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LVL A+ R R +S GA TVD +DKN VVALREIA T+ P
Sbjct: 1 MARVTVEDCVDKVPNRFDLVLFAAQRARQISGGADLTVDRDRDKNPVVALREIAEETVRP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKP 94
LEE ++SLQ+ DE ++ S + +
Sbjct: 61 THLEEAVVNSLQRVQIDDEDEADDVGSLQASAEA 94
>gi|329850752|ref|ZP_08265597.1| DNA-directed RNA polymerase, omega subunit [Asticcacaulis
biprosthecum C19]
gi|328841067|gb|EGF90638.1| DNA-directed RNA polymerase, omega subunit [Asticcacaulis
biprosthecum C19]
Length = 119
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 49/113 (43%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++++DNRF LVLLA+HR R +S G+ VD DKN VV+LREIA + P
Sbjct: 1 MARVTVEDCVEQIDNRFNLVLLAAHRARAISSGSAILVDRDNDKNPVVSLREIADKAIEP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINN 113
L E I SLQ+ E E + E QMSE +L+ + +
Sbjct: 61 HVLTESLIASLQRVDERTEAEEEAETLALLADPQHQ----QMSESELIRALQS 109
>gi|83858191|ref|ZP_00951713.1| DNA-directed RNA polymerase omega subunit [Oceanicaulis alexandrii
HTCC2633]
gi|83853014|gb|EAP90866.1| DNA-directed RNA polymerase omega subunit [Oceanicaulis alexandrii
HTCC2633]
Length = 125
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 52/115 (45%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA+HR R++S GA+ T+D DKN VVALREIA L
Sbjct: 1 MARVTVEDCIDKVDNRFRLVLLAAHRARNISAGAELTLDRDNDKNPVVALREIADEKLDL 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTEN--SDFSWHKPEALSFGQMSEGDLLEGINN 113
+ L E + LQ+ + D+ + E AL +M E +L+ + +
Sbjct: 61 ETLGESLVSGLQRVIPSDDDEGGIEERVPQTEAPAAPALPAPEMDETAMLKALQS 115
>gi|260576281|ref|ZP_05844273.1| DNA-directed RNA polymerase, omega subunit [Rhodobacter sp. SW2]
gi|259021549|gb|EEW24853.1| DNA-directed RNA polymerase, omega subunit [Rhodobacter sp. SW2]
Length = 117
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 52/114 (45%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R ++ G+ TVD DKN VV+LREIA T
Sbjct: 1 MARVTVEDCVDKVPNRFELVMLAAHRAREITAGSPVTVDRDNDKNPVVSLREIADETQLA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
D L E I S Q +EIDEP+ S + + MSE +L +
Sbjct: 61 DALRERMIESHQTQIEIDEPEDDDMAQLMSG-EMDRPMQDDMSEERMLRMLMEA 113
>gi|167645691|ref|YP_001683354.1| DNA-directed RNA polymerase subunit omega [Caulobacter sp. K31]
gi|189043974|sp|B0T3H0|RPOZ_CAUSK RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|167348121|gb|ABZ70856.1| DNA-directed RNA polymerase, omega subunit [Caulobacter sp. K31]
Length = 119
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 49/113 (43%), Positives = 63/113 (55%), Gaps = 4/113 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++KV NRF LVLL++HR R +S GA VD DKN VVALREIA +
Sbjct: 1 MARVTVEDCVEKVPNRFALVLLSAHRARGISAGASLLVDRDNDKNPVVALREIADDVVDH 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINN 113
+ L E I +LQ+ E E + E QMSE +L+ + +
Sbjct: 61 EGLREQLITTLQRVDEHTEAEEEAETLALLADPTHM----QMSELELVRALQS 109
>gi|326386137|ref|ZP_08207761.1| DNA-directed RNA polymerase subunit omega [Novosphingobium
nitrogenifigens DSM 19370]
gi|326209362|gb|EGD60155.1| DNA-directed RNA polymerase subunit omega [Novosphingobium
nitrogenifigens DSM 19370]
Length = 114
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 59/94 (62%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LVLLA+ R R +S GA+ T+D +DKN VVALREIA T+ P
Sbjct: 1 MARVTVEDCVDKVPNRFDLVLLAAERARAISGGAELTLDRDRDKNPVVALREIAEETVRP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKP 94
L+E+ I SLQ+ D+ S +
Sbjct: 61 ATLKENLIQSLQRVQPDDDDQVDEIGSLSQSAEA 94
>gi|295690028|ref|YP_003593721.1| DNA-directed RNA polymerase subunit omega [Caulobacter segnis ATCC
21756]
gi|295431931|gb|ADG11103.1| DNA-directed RNA polymerase, omega subunit [Caulobacter segnis ATCC
21756]
Length = 119
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 49/113 (43%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++KV NRF LVLL++HR R +S GA VD DKN VVALREIA +
Sbjct: 1 MARVTVEDCVEKVPNRFALVLLSAHRARGISAGAALMVDRDNDKNPVVALREIADDVIDH 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINN 113
+ L+E I +LQ+ E E + E QMSE +L+ + +
Sbjct: 61 EGLKEHLITTLQRVDEHTEAEEEAETLALLADPSHM----QMSELELVRALQS 109
>gi|16125799|ref|NP_420363.1| DNA-directed RNA polymerase subunit omega [Caulobacter crescentus
CB15]
gi|221234558|ref|YP_002516994.1| DNA-directed RNA polymerase subunit omega [Caulobacter crescentus
NA1000]
gi|13959464|sp|P58066|RPOZ_CAUCR RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|254809275|sp|B8H618|RPOZ_CAUCN RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|13422939|gb|AAK23531.1| DNA-directed RNA polymerase, omega subunit [Caulobacter crescentus
CB15]
gi|220963730|gb|ACL95086.1| DNA-directed RNA polymerase omega chain [Caulobacter crescentus
NA1000]
Length = 119
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 49/113 (43%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++KV NRF LVLL++HR R +S GA VD DKN VVALREIA +
Sbjct: 1 MARVTVEDCVEKVPNRFALVLLSAHRARGISAGAALMVDRDNDKNPVVALREIADDVIDH 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINN 113
+ L+E I +LQ+ E E + E QMSE +L+ + +
Sbjct: 61 EGLKEHLISTLQRVDEHTEAEEEAETLALLADPSHM----QMSELELVRALQS 109
>gi|144899866|emb|CAM76730.1| DNA-directed RNA polymerase omega chain [Magnetospirillum
gryphiswaldense MSR-1]
Length = 128
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/121 (43%), Positives = 69/121 (57%), Gaps = 3/121 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ KV NRF LVL+A+ R R +S G + TV+ DKN VVALREIA T+
Sbjct: 1 MARVTVEDCVTKVPNRFELVLIAAQRARDISTGGRITVERDNDKNPVVALREIAEDTVEL 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNIVTPDKR 120
D L + LQKHVE+DEP+ + + + F ++ + LE VT D
Sbjct: 61 DHLRNALVTGLQKHVEVDEPEEDELEAFMPEND---MGFENIASDEDLEDGGMTVTDDPM 117
Query: 121 D 121
D
Sbjct: 118 D 118
>gi|119384142|ref|YP_915198.1| DNA-directed RNA polymerase subunit omega [Paracoccus denitrificans
PD1222]
gi|166230339|sp|A1B1V8|RPOZ_PARDP RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|119373909|gb|ABL69502.1| DNA-directed RNA polymerase subunit omega [Paracoccus denitrificans
PD1222]
Length = 118
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 49/109 (44%), Positives = 62/109 (56%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LV+LA+HR R ++ G+ TVD DKN VV+LREIA T
Sbjct: 1 MARVTVEDCVDKVPNRFDLVMLAAHRAREIAAGSPLTVDRDNDKNPVVSLREIADETQPV 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLE 109
DDL E I + Q +E+DEP+ + SE +L
Sbjct: 61 DDLRERMIEAQQTQIEVDEPEEDAMALLLGAEMDRPKPADEESEERMLR 109
>gi|94497688|ref|ZP_01304256.1| DNA-directed RNA polymerase, omega subunit [Sphingomonas sp.
SKA58]
gi|94422905|gb|EAT07938.1| DNA-directed RNA polymerase, omega subunit [Sphingomonas sp.
SKA58]
Length = 114
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 48/94 (51%), Positives = 59/94 (62%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LVLLA+ R R +S GA+ T+D +DKN VVALREIA T+ P
Sbjct: 1 MARVTVEDCVDKVTNRFDLVLLAAQRAREISGGAELTLDRDRDKNPVVALREIAEETVLP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKP 94
D+L + I SLQK D+ S +
Sbjct: 61 DELHDSLIGSLQKVQIDDDDTPDEIGSIAQSAEA 94
>gi|209964802|ref|YP_002297717.1| DNA-directed RNA polymerase, omega subunit, putative
[Rhodospirillum centenum SW]
gi|226703166|sp|B6IN07|RPOZ_RHOCS RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|209958268|gb|ACI98904.1| DNA-directed RNA polymerase, omega subunit, putative
[Rhodospirillum centenum SW]
Length = 142
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/86 (46%), Positives = 54/86 (62%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++KV NRF LV++A+ R R ++ G+ +VD DKN VVALREIA T++
Sbjct: 1 MARVTVEDCVEKVPNRFELVMMAAQRARDIAAGSPLSVDRDNDKNPVVALREIADETVTL 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTEN 86
+ L I Q+ E DEP+
Sbjct: 61 ETLRNSLIKGHQRVPEQDEPEEEIVE 86
>gi|85375023|ref|YP_459085.1| DNA-directed RNA polymerase subunit omega [Erythrobacter
litoralis HTCC2594]
gi|123099489|sp|Q2N7Q3|RPOZ_ERYLH RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|84788106|gb|ABC64288.1| DNA-directed RNA polymerase subunit K [Erythrobacter litoralis
HTCC2594]
Length = 114
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 61/94 (64%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LVLLA+ R R +S GA+ T+D +DKN VVALREIA T+ P
Sbjct: 1 MARVTVEDCVDKVPNRFDLVLLAAQRAREISGGAEMTIDRDRDKNPVVALREIAEQTIKP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKP 94
DL+E + +LQK + D+ + S +
Sbjct: 61 KDLQEAVVTNLQKILPDDDDEFDEVGSLSQSAEA 94
>gi|149186337|ref|ZP_01864650.1| DNA-directed RNA polymerase subunit omega [Erythrobacter sp.
SD-21]
gi|148829926|gb|EDL48364.1| DNA-directed RNA polymerase subunit omega [Erythrobacter sp.
SD-21]
Length = 114
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 61/94 (64%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DK+ NRF LVLLA+ R R +S GA+ T++ +DKN VVALREIA T+ P
Sbjct: 1 MARVTVEDCVDKIPNRFDLVLLAAQRAREISGGAEITLERDRDKNPVVALREIAEQTVKP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKP 94
DL+E + +LQK + D+ + S +
Sbjct: 61 KDLKEAAVTNLQKILPDDDDEIDEVGSLSQSAEA 94
>gi|148259546|ref|YP_001233673.1| DNA-directed RNA polymerase, omega subunit [Acidiphilium cryptum
JF-5]
gi|326402752|ref|YP_004282833.1| DNA-directed RNA polymerase subunit omega [Acidiphilium
multivorum AIU301]
gi|166229338|sp|A5FVX2|RPOZ_ACICJ RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|146401227|gb|ABQ29754.1| DNA-directed RNA polymerase subunit omega [Acidiphilium cryptum
JF-5]
gi|325049613|dbj|BAJ79951.1| DNA-directed RNA polymerase subunit omega [Acidiphilium
multivorum AIU301]
Length = 136
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 43/93 (46%), Positives = 59/93 (63%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCI+++ NRF LVLLA+ R R+LS+GA T+D DKN VVALREIA T+
Sbjct: 1 MARVTVEDCIEQIPNRFELVLLAAQRARNLSRGASITIDRDNDKNPVVALREIADSTVDF 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHK 93
LE+D + SL + + + D ++ +
Sbjct: 61 GGLEQDLVKSLSRVPDPEPADEEVQDLIPTDQN 93
>gi|296282897|ref|ZP_06860895.1| DNA-directed RNA polymerase subunit omega [Citromicrobium
bathyomarinum JL354]
Length = 114
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 61/94 (64%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DK+ NRF LVLLA+ R R +S GA+ T+D +DKN VVALREIA T+ P
Sbjct: 1 MARVTVEDCVDKIPNRFDLVLLAAERAREISGGAEITLDRDRDKNPVVALREIAEQTVKP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKP 94
DL+E + +LQK + D+ + S +
Sbjct: 61 KDLQESMVTNLQKILPDDDDEVDEIGSLSQSAEA 94
>gi|6136305|gb|AAF04326.1| RnpO [Bradyrhizobium japonicum]
Length = 104
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 44/67 (65%), Positives = 52/67 (77%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKVDNRF LVLLA+HR R +S G++ VD DKN VV+LREIA T+SP
Sbjct: 1 MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLKVDRDNDKNPVVSLREIADTTISP 60
Query: 61 DDLEEDF 67
+DL E+
Sbjct: 61 EDLREEL 67
>gi|148652388|ref|YP_001279481.1| DNA-directed RNA polymerase subunit omega [Psychrobacter sp.
PRwf-1]
gi|172048502|sp|A5WCZ0|RPOZ_PSYWF RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|148571472|gb|ABQ93531.1| DNA-directed RNA polymerase, omega subunit [Psychrobacter sp.
PRwf-1]
Length = 86
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 37/66 (56%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQG-AKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+ VDNRF LVL+AS R L++G ++P V+V DK TV+ALREIA+G ++
Sbjct: 1 MARVTVEDCLHAVDNRFELVLVASKRAHQLAKGVSEPLVEVNNDKPTVLALREIAAGLVT 60
Query: 60 PDDLEE 65
D L +
Sbjct: 61 KDILNQ 66
>gi|91774405|ref|YP_544161.1| DNA-directed RNA polymerase, omega subunit [Methylobacillus
flagellatus KT]
gi|123078689|sp|Q1GXB8|RPOZ_METFK RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|91708392|gb|ABE48320.1| DNA-directed RNA polymerase subunit omega [Methylobacillus
flagellatus KT]
Length = 70
Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats.
Identities = 35/65 (53%), Positives = 49/65 (75%), Gaps = 2/65 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVG--KDKNTVVALREIASGTL 58
MAR TV+DC++K+ NRF L L+A++R R L+ GA+P V+V KDK TV+ALREIA+G +
Sbjct: 1 MARITVDDCLEKIPNRFQLTLVAAYRARQLANGAEPLVNVHGSKDKPTVLALREIAAGKV 60
Query: 59 SPDDL 63
+ L
Sbjct: 61 GLEVL 65
>gi|330813852|ref|YP_004358091.1| DNA-directed RNA polymerase omega subunit [Candidatus Pelagibacter
sp. IMCC9063]
gi|327486947|gb|AEA81352.1| DNA-directed RNA polymerase omega subunit [Candidatus Pelagibacter
sp. IMCC9063]
Length = 158
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 8/121 (6%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+++VDN++ L++LA RT + G KP VD DK TV++LREI +
Sbjct: 1 MARVTVEDCLEQVDNQYDLIILAKERTLQIGAGDKPLVDEDNDKKTVISLREIGDKKIDI 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNIVTPDKR 120
+L + + H E + + + EA+ G++S+ + P KR
Sbjct: 61 KNLNNATVDRARDHPE--DATVQEDFDAPEGDEFEAIYKGEVSKSG------QAILPSKR 112
Query: 121 D 121
Sbjct: 113 S 113
>gi|294010707|ref|YP_003544167.1| DNA-directed RNA polymerase subunit K/omega [Sphingobium
japonicum UT26S]
gi|307293644|ref|ZP_07573488.1| DNA-directed RNA polymerase, omega subunit [Sphingobium
chlorophenolicum L-1]
gi|292674037|dbj|BAI95555.1| DNA-directed RNA polymerase subunit K/omega [Sphingobium
japonicum UT26S]
gi|306879795|gb|EFN11012.1| DNA-directed RNA polymerase, omega subunit [Sphingobium
chlorophenolicum L-1]
Length = 114
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 58/94 (61%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV NRF LVLLA+ R R +S GA+ T+D +DKN VVALREIA T+ P
Sbjct: 1 MARVTVEDCVDKVTNRFDLVLLAAQRAREISGGAELTLDRDRDKNPVVALREIAEETVLP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKP 94
DL + + SLQK D+ S +
Sbjct: 61 VDLHDSLVASLQKVQIDDDDTPDEIGSIAQSAEA 94
>gi|148556430|ref|YP_001264012.1| DNA-directed RNA polymerase subunit omega [Sphingomonas wittichii
RW1]
gi|166230366|sp|A5VC58|RPOZ_SPHWW RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|148501620|gb|ABQ69874.1| DNA-directed RNA polymerase, omega subunit [Sphingomonas
wittichii RW1]
Length = 113
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 61/94 (64%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DK+ NRF LVL+A+ R R +S GA+ T+D +DKN VVALREIA T++P
Sbjct: 1 MARVTVEDCVDKISNRFDLVLMAAQRARQISGGAELTIDRDRDKNPVVALREIAEQTVTP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKP 94
++L E + +LQ+ D+ S + +
Sbjct: 61 EELHEAVVSTLQRVRVDDDDAPDEIGSLAASAEA 94
>gi|255320205|ref|ZP_05361390.1| DNA-directed RNA polymerase, omega subunit [Acinetobacter
radioresistens SK82]
gi|262380421|ref|ZP_06073575.1| DNA-directed RNA polymerase, omega subunit [Acinetobacter
radioresistens SH164]
gi|255302644|gb|EET81876.1| DNA-directed RNA polymerase, omega subunit [Acinetobacter
radioresistens SK82]
gi|262297867|gb|EEY85782.1| DNA-directed RNA polymerase, omega subunit [Acinetobacter
radioresistens SH164]
Length = 93
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 42/67 (62%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHL-SQGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+D VDNRF LVL+AS R R L QG +PTV+ DK TVVALREIA+G +S
Sbjct: 1 MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVALREIAAGHVS 60
Query: 60 PDDLEED 66
D L++
Sbjct: 61 KDILKQR 67
>gi|262377078|ref|ZP_06070304.1| DNA-directed RNA polymerase, omega subunit [Acinetobacter lwoffii
SH145]
gi|262308116|gb|EEY89253.1| DNA-directed RNA polymerase, omega subunit [Acinetobacter lwoffii
SH145]
Length = 93
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 43/67 (64%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHL-SQGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+D VDNRF LVL+AS R R L QG +PTV+ DK TVVALREIASG +S
Sbjct: 1 MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVALREIASGHVS 60
Query: 60 PDDLEED 66
D L++
Sbjct: 61 KDILKQR 67
>gi|332977845|gb|EGK14599.1| DNA-directed RNA polymerase subunit omega [Psychrobacter sp.
1501(2011)]
Length = 86
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/66 (57%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQG-AKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+ VDNRF LVL+AS R L++G A+P V+V DK TV+ALREIA+G ++
Sbjct: 1 MARVTVEDCLHAVDNRFELVLVASKRAHQLAKGIAEPLVEVNNDKPTVLALREIAAGLVT 60
Query: 60 PDDLEE 65
D L++
Sbjct: 61 KDILDQ 66
>gi|302383617|ref|YP_003819440.1| DNA-directed RNA polymerase subunit omega [Brevundimonas
subvibrioides ATCC 15264]
gi|302194245|gb|ADL01817.1| DNA-directed RNA polymerase, omega subunit [Brevundimonas
subvibrioides ATCC 15264]
Length = 119
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 47/113 (41%), Positives = 63/113 (55%), Gaps = 4/113 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCI +V NRF LVLLA +R R ++ GA T+D DKN VVALREIA T+ P
Sbjct: 1 MARVTVEDCIQRVPNRFGLVLLAGNRARAIANGAPLTLDRDNDKNPVVALREIADETVVP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINN 113
+L E + +LQ+ E E + E M+E +L+ + +
Sbjct: 61 AELLETVVVALQRVDERTEAEDEAEIVGLLAEPQHM----NMAEAELIRALQS 109
>gi|71066279|ref|YP_265006.1| DNA-directed RNA polymerase subunit omega [Psychrobacter arcticus
273-4]
gi|93006828|ref|YP_581265.1| DNA-directed RNA polymerase, omega subunit [Psychrobacter
cryohalolentis K5]
gi|115305601|sp|Q4FQY6|RPOZ_PSYA2 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|123083286|sp|Q1Q972|RPOZ_PSYCK RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|71039264|gb|AAZ19572.1| RNA polymerase, omega subunit [Psychrobacter arcticus 273-4]
gi|92394506|gb|ABE75781.1| DNA-directed RNA polymerase, omega subunit [Psychrobacter
cryohalolentis K5]
Length = 86
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 40/66 (60%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQG-AKPTVDVGKDKNTVVALREIASGTLS 59
MAR T+EDC+D VDNRF LVL+AS R R L++G A+P VDV DK TV+ALREIA+G ++
Sbjct: 1 MARVTIEDCLDNVDNRFELVLVASKRARQLAKGIAEPLVDVDNDKPTVLALREIAAGKIT 60
Query: 60 PDDLEE 65
D L +
Sbjct: 61 RDILNQ 66
>gi|330993368|ref|ZP_08317303.1| DNA-directed RNA polymerase subunit omega [Gluconacetobacter sp.
SXCC-1]
gi|329759398|gb|EGG75907.1| DNA-directed RNA polymerase subunit omega [Gluconacetobacter sp.
SXCC-1]
Length = 131
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 48/127 (37%), Positives = 67/127 (52%), Gaps = 11/127 (8%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+++V NRF LVLLA+ R R LS+G + T+D DKN VVALREIA T+
Sbjct: 1 MARVTVEDCVERVPNRFELVLLAAQRARALSRGEEMTIDRDNDKNPVVALREIADQTVGL 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTEN-----------SDFSWHKPEALSFGQMSEGDLLE 109
+ + D I SL + E + D + D S + + G MS +L
Sbjct: 61 EQIRSDLIRSLARAPEPEPADEEVADLIPTEHNIFGLQDVSAEEEARHAGGGMSAEELEA 120
Query: 110 GINNIVT 116
+ ++
Sbjct: 121 SVEAALS 127
>gi|262280322|ref|ZP_06058106.1| RNA polymerase omega subunit [Acinetobacter calcoaceticus
RUH2202]
gi|293610728|ref|ZP_06693028.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|299768567|ref|YP_003730593.1| DNA-directed RNA polymerase subunit omega [Acinetobacter sp. DR1]
gi|262258100|gb|EEY76834.1| RNA polymerase omega subunit [Acinetobacter calcoaceticus
RUH2202]
gi|292827072|gb|EFF85437.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|298698655|gb|ADI89220.1| DNA-directed RNA polymerase subunit omega [Acinetobacter sp. DR1]
gi|325123701|gb|ADY83224.1| RNA polymerase, omega subunit [Acinetobacter calcoaceticus
PHEA-2]
Length = 92
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 39/67 (58%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHL-SQGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+D VDNRF LVL+AS R R L QG +PTV+ DK TVV+LREIA+G ++
Sbjct: 1 MARVTVEDCLDHVDNRFELVLVASKRARQLARQGMEPTVEWDNDKPTVVSLREIAAGHVT 60
Query: 60 PDDLEED 66
+ L++
Sbjct: 61 KEILKQR 67
>gi|257092556|ref|YP_003166197.1| DNA-directed RNA polymerase subunit omega [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257045080|gb|ACV34268.1| DNA-directed RNA polymerase, omega subunit [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 68
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 45/63 (71%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TV+DC+ ++ NRF + L A++R R ++ GA P +D G+DK TV+ALREI +G +
Sbjct: 1 MARVTVDDCLHRIPNRFQMTLAATYRARQITSGATPLIDAGRDKPTVIALREIGAGKIGL 60
Query: 61 DDL 63
+ L
Sbjct: 61 EVL 63
>gi|310815106|ref|YP_003963070.1| DNA-directed RNA polymerase omega subunit [Ketogulonicigenium
vulgare Y25]
gi|308753841|gb|ADO41770.1| DNA-directed RNA polymerase omega subunit [Ketogulonicigenium
vulgare Y25]
Length = 117
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 49/114 (42%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DK+ NRF LV+LA+HR R ++ G+ TV DKN VV+LREIA T
Sbjct: 1 MARVTVEDCVDKIPNRFELVMLAAHRAREIAAGSALTVPRDNDKNPVVSLREIAEETQLA 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
DDL E I + Q +E+DEP+ + S + + + M+E LL +
Sbjct: 61 DDLRERMIEANQHEIEVDEPEDDSMALLMS-AELDRPAQDDMTEERLLRELLQA 113
>gi|262370653|ref|ZP_06063978.1| RNA polymerase [Acinetobacter johnsonii SH046]
gi|262314453|gb|EEY95495.1| RNA polymerase [Acinetobacter johnsonii SH046]
Length = 93
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 42/67 (62%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHL-SQGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+D VDNRF LVL+AS R R L QG +PTV+ DK TVVALREIA G +S
Sbjct: 1 MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVALREIAIGHVS 60
Query: 60 PDDLEED 66
D L++
Sbjct: 61 KDILKQR 67
>gi|162147941|ref|YP_001602402.1| DNA-directed RNA polymerase subunit omega [Gluconacetobacter
diazotrophicus PAl 5]
gi|209542559|ref|YP_002274788.1| DNA-directed RNA polymerase subunit omega [Gluconacetobacter
diazotrophicus PAl 5]
gi|189043985|sp|A9HKY5|RPOZ_GLUDA RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|161786518|emb|CAP56100.1| DNA-directed RNA polymerase omega chain [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530236|gb|ACI50173.1| DNA-directed RNA polymerase, omega subunit [Gluconacetobacter
diazotrophicus PAl 5]
Length = 132
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 44/105 (41%), Positives = 58/105 (55%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+++V NRF LVLLA+ R R LS+G + TVD DKN VVALREIA T+
Sbjct: 1 MARVTVEDCVERVPNRFELVLLAAQRARGLSRGEELTVDRDNDKNPVVALREIADQTIVL 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEG 105
+ + D + SL + E + D + + L E
Sbjct: 61 EQIRSDLVRSLARAPEPEPADEEVMDLIPTEQNIFGLQDVSAEEE 105
>gi|262373610|ref|ZP_06066888.1| DNA-directed RNA polymerase, omega subunit [Acinetobacter junii
SH205]
gi|262311363|gb|EEY92449.1| DNA-directed RNA polymerase, omega subunit [Acinetobacter junii
SH205]
Length = 92
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 41/67 (61%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHL-SQGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+D VDNRF LVL+AS R R L QG +PTV+ DK TVVALREIA G ++
Sbjct: 1 MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVALREIAIGHVT 60
Query: 60 PDDLEED 66
D L++
Sbjct: 61 KDILKQR 67
>gi|114327652|ref|YP_744809.1| DNA-directed RNA polymerase subunit omega [Granulibacter
bethesdensis CGDNIH1]
gi|114315826|gb|ABI61886.1| DNA-directed RNA polymerase omega chain [Granulibacter bethesdensis
CGDNIH1]
Length = 136
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 50/120 (41%), Positives = 64/120 (53%), Gaps = 6/120 (5%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++KV NRF LVLLA+HR R +S+G + T+D DKN VVALREIA T++
Sbjct: 6 MARVTVEDCVEKVPNRFELVLLAAHRARCISRGEELTIDRDNDKNPVVALREIADETVTT 65
Query: 61 DDLEEDFIHSLQKHVEIDEPDSP------TENSDFSWHKPEALSFGQMSEGDLLEGINNI 114
L +D + SL + E + D TE + F A S DL
Sbjct: 66 TGLHQDLMKSLSRAPEPEPADEEVLDLIPTEQNIFGLQDVSAEEEAHSSAADLSSDEMEA 125
>gi|83311351|ref|YP_421615.1| DNA-directed RNA polymerase subunit omega [Magnetospirillum
magneticum AMB-1]
gi|115305587|sp|Q2W519|RPOZ_MAGSA RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|82946192|dbj|BAE51056.1| DNA-directed RNA polymerase, subunit K/omega [Magnetospirillum
magneticum AMB-1]
Length = 126
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 52/111 (46%), Positives = 65/111 (58%), Gaps = 3/111 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ KV NRF LVL+A R R +S GAK TV+ DKN VVALREIA T+
Sbjct: 1 MARVTVEDCVLKVPNRFELVLIAGQRARDISAGAKLTVERDNDKNPVVALREIADDTVPL 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTEN---SDFSWHKPEALSFGQMSEGDLL 108
D L+ I +LQKHVE+DEP+ +D + +M E +
Sbjct: 61 DALQNALIQNLQKHVEVDEPEEDEMEGFIADRDLAFENVANEDEMIEDGMS 111
>gi|226953765|ref|ZP_03824229.1| RNA polymerase omega subunit [Acinetobacter sp. ATCC 27244]
gi|294651751|ref|ZP_06729051.1| DNA-directed RNA polymerase subunit omega [Acinetobacter
haemolyticus ATCC 19194]
gi|226835497|gb|EEH67880.1| RNA polymerase omega subunit [Acinetobacter sp. ATCC 27244]
gi|292822373|gb|EFF81276.1| DNA-directed RNA polymerase subunit omega [Acinetobacter
haemolyticus ATCC 19194]
Length = 92
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 39/67 (58%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHL-SQGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+D VDNRF LVL+AS R R + QG +PTV+ DK TVVALREIA G ++
Sbjct: 1 MARVTVEDCLDHVDNRFELVLVASKRARQIARQGMEPTVEWDNDKPTVVALREIAVGHVT 60
Query: 60 PDDLEED 66
+ L++
Sbjct: 61 KEILKQR 67
>gi|126643186|ref|YP_001086170.1| DNA-directed RNA polymerase subunit omega [Acinetobacter
baumannii ATCC 17978]
gi|169632267|ref|YP_001706003.1| DNA-directed RNA polymerase subunit omega [Acinetobacter
baumannii SDF]
gi|169794501|ref|YP_001712294.1| DNA-directed RNA polymerase subunit omega [Acinetobacter
baumannii AYE]
gi|184159691|ref|YP_001848030.1| DNA-directed RNA polymerase subunit omega [Acinetobacter
baumannii ACICU]
gi|213158927|ref|YP_002320925.1| DNA-directed RNA polymerase, omega subunit [Acinetobacter
baumannii AB0057]
gi|215482090|ref|YP_002324272.1| DNA-directed RNA polymerase, omega subunit [Acinetobacter
baumannii AB307-0294]
gi|239501946|ref|ZP_04661256.1| DNA-directed RNA polymerase subunit omega [Acinetobacter
baumannii AB900]
gi|260550852|ref|ZP_05825059.1| RNA polymerase omega subunit [Acinetobacter sp. RUH2624]
gi|260556935|ref|ZP_05829152.1| DNA-directed RNA polymerase, omega subunit [Acinetobacter
baumannii ATCC 19606]
gi|301344878|ref|ZP_07225619.1| DNA-directed RNA polymerase subunit omega [Acinetobacter
baumannii AB056]
gi|301511702|ref|ZP_07236939.1| DNA-directed RNA polymerase subunit omega [Acinetobacter
baumannii AB058]
gi|301594719|ref|ZP_07239727.1| DNA-directed RNA polymerase subunit omega [Acinetobacter
baumannii AB059]
gi|332851335|ref|ZP_08433387.1| DNA-directed RNA polymerase, omega subunit [Acinetobacter
baumannii 6013150]
gi|332868746|ref|ZP_08438369.1| DNA-directed RNA polymerase, omega subunit [Acinetobacter
baumannii 6013113]
gi|332873794|ref|ZP_08441736.1| DNA-directed RNA polymerase, omega subunit [Acinetobacter
baumannii 6014059]
gi|166229336|sp|A3M9H4|RPOZ_ACIBT RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226699529|sp|B7GVQ9|RPOZ_ACIB3 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226699530|sp|B7IAU2|RPOZ_ACIB5 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226699531|sp|B2HZW5|RPOZ_ACIBC RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226699532|sp|B0VQ51|RPOZ_ACIBS RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226699533|sp|B0V8M2|RPOZ_ACIBY RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|126389070|gb|ABO13568.1| RNA polymerase omega subunit [Acinetobacter baumannii ATCC 17978]
gi|169147428|emb|CAM85289.1| RNA polymerase, omega subunit [Acinetobacter baumannii AYE]
gi|169151059|emb|CAO99715.1| RNA polymerase, omega subunit [Acinetobacter baumannii]
gi|183211285|gb|ACC58683.1| DNA-directed RNA polymerase, subunit K/omega [Acinetobacter
baumannii ACICU]
gi|213058087|gb|ACJ42989.1| DNA-directed RNA polymerase, omega subunit [Acinetobacter
baumannii AB0057]
gi|213986188|gb|ACJ56487.1| DNA-directed RNA polymerase, omega subunit [Acinetobacter
baumannii AB307-0294]
gi|260406162|gb|EEW99647.1| RNA polymerase omega subunit [Acinetobacter sp. RUH2624]
gi|260409541|gb|EEX02842.1| DNA-directed RNA polymerase, omega subunit [Acinetobacter
baumannii ATCC 19606]
gi|322509602|gb|ADX05056.1| rpoZ [Acinetobacter baumannii 1656-2]
gi|323519622|gb|ADX94003.1| DNA-directed RNA polymerase subunit omega [Acinetobacter
baumannii TCDC-AB0715]
gi|332730051|gb|EGJ61379.1| DNA-directed RNA polymerase, omega subunit [Acinetobacter
baumannii 6013150]
gi|332733175|gb|EGJ64372.1| DNA-directed RNA polymerase, omega subunit [Acinetobacter
baumannii 6013113]
gi|332738017|gb|EGJ68902.1| DNA-directed RNA polymerase, omega subunit [Acinetobacter
baumannii 6014059]
Length = 92
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 40/67 (59%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHL-SQGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+D VDNRF LVL+AS R R L QG +PTV+ DK TVVALREIA G ++
Sbjct: 1 MARVTVEDCLDHVDNRFELVLVASKRARQLARQGMEPTVEWDNDKPTVVALREIAVGHVT 60
Query: 60 PDDLEED 66
+ L++
Sbjct: 61 KEILKQR 67
>gi|50086308|ref|YP_047818.1| DNA-directed RNA polymerase subunit omega [Acinetobacter sp.
ADP1]
gi|81612998|sp|Q6F7G9|RPOZ_ACIAD RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|49532284|emb|CAG69996.1| RNA polymerase, omega subunit [Acinetobacter sp. ADP1]
Length = 93
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 40/67 (59%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHL-SQGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+D VDNRF LVL+AS R R L QG +PTV+ DK TVV+LREIA G ++
Sbjct: 1 MARVTVEDCLDHVDNRFELVLVASKRARQLARQGIEPTVEWDNDKPTVVSLREIAEGHVT 60
Query: 60 PDDLEED 66
D L++
Sbjct: 61 KDILKQR 67
>gi|71909455|ref|YP_287042.1| RNA polymerase, omega subunit [Dechloromonas aromatica RCB]
gi|115305581|sp|Q479A9|RPOZ_DECAR RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|71849076|gb|AAZ48572.1| DNA-directed RNA polymerase subunit omega [Dechloromonas
aromatica RCB]
Length = 68
Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TV+DC+ ++ NRF + L A+HR R L+ GA P VD K K TVVAL+E+ +G +
Sbjct: 1 MARVTVDDCLKRIPNRFQMTLAAAHRARQLANGATPLVDPEKHKPTVVALKEMGAGKVGL 60
Query: 61 DDL 63
+ L
Sbjct: 61 EVL 63
>gi|121997761|ref|YP_001002548.1| DNA-directed RNA polymerase subunit omega [Halorhodospira
halophila SL1]
gi|166230322|sp|A1WVN4|RPOZ_HALHL RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|121589166|gb|ABM61746.1| DNA-directed RNA polymerase subunit omega [Halorhodospira
halophila SL1]
Length = 123
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 41/74 (55%), Positives = 50/74 (67%), Gaps = 3/74 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+D VDNRF LVL + R R L++G +P VD DK TVVALREIA+G ++
Sbjct: 1 MARVTVEDCLDNVDNRFELVLAGAKRARQLAKGIEPLVDWENDKPTVVALREIAAGHVTS 60
Query: 61 DDL---EEDFIHSL 71
+ L EE SL
Sbjct: 61 EILTSTEESAADSL 74
>gi|56552616|ref|YP_163455.1| DNA-directed RNA polymerase subunit omega [Zymomonas mobilis subsp.
mobilis ZM4]
gi|241762139|ref|ZP_04760222.1| DNA-directed RNA polymerase, omega subunit [Zymomonas mobilis
subsp. mobilis ATCC 10988]
gi|260753729|ref|YP_003226622.1| DNA-directed RNA polymerase subunit omega [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|81354649|sp|Q5NLR6|RPOZ_ZYMMO RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|56544190|gb|AAV90344.1| DNA-directed RNA polymerase, omega subunit [Zymomonas mobilis
subsp. mobilis ZM4]
gi|241373389|gb|EER62989.1| DNA-directed RNA polymerase, omega subunit [Zymomonas mobilis
subsp. mobilis ATCC 10988]
gi|258553092|gb|ACV76038.1| DNA-directed RNA polymerase, omega subunit [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
Length = 125
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 45/100 (45%), Positives = 60/100 (60%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCIDKV NRF L+LLA+ R R +S GA+ T+D +DKN VVALREIA ++P
Sbjct: 1 MARVTVEDCIDKVHNRFDLILLAAQRARQISGGAELTLDRDRDKNPVVALREIADELITP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFG 100
L E ++ LQ+ D+ S + + L+
Sbjct: 61 VQLREALLNDLQQVHLDDDDVPDEVGSLSASAEALRLTAE 100
>gi|134095316|ref|YP_001100391.1| DNA-directed RNA polymerase subunit omega [Herminiimonas
arsenicoxydans]
gi|166230323|sp|A4G6Y1|RPOZ_HERAR RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|133739219|emb|CAL62268.1| DNA-directed RNA polymerase omega chain (RNAP omega subunit)
(Transcriptase omega chain) (RNA polymerase omega
subunit) [Herminiimonas arsenicoxydans]
Length = 67
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR T+EDC+ ++ NRF L L A++R R L QG P VD KDK TV+ALREIA+G +
Sbjct: 1 MARITIEDCLKQIPNRFQLTLCATYRARQLLQGHTPKVD-AKDKPTVIALREIAAGHVGI 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|297537282|ref|YP_003673051.1| DNA-directed RNA polymerase subunit omega [Methylotenera sp. 301]
gi|297256629|gb|ADI28474.1| DNA-directed RNA polymerase, omega subunit [Methylotenera sp.
301]
Length = 70
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVG--KDKNTVVALREIASGTL 58
MAR TV+DC+D++ NRF L L+A++R R L GA+P ++ +DK TV+ALREIA+G +
Sbjct: 1 MARITVDDCLDQIPNRFQLTLVAAYRARQLHNGAEPLINTQGLRDKTTVLALREIAAGKI 60
Query: 59 SPDDL 63
+ L
Sbjct: 61 GVEIL 65
>gi|319942270|ref|ZP_08016585.1| DNA-directed RNA polymerase subunit omega [Sutterella
wadsworthensis 3_1_45B]
gi|319804143|gb|EFW01043.1| DNA-directed RNA polymerase subunit omega [Sutterella
wadsworthensis 3_1_45B]
Length = 66
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 36/65 (55%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ K+ NRF +VL+A++R R LSQG P +D KDK V+ALREIA G +
Sbjct: 1 MARITVEDCLKKIPNRFQMVLVAAYRARQLSQGYAPKID-AKDKPGVIALREIADGLIGT 59
Query: 61 DDLEE 65
D L+
Sbjct: 60 DMLKN 64
>gi|114799587|ref|YP_759599.1| DNA-directed RNA polymerase subunit omega [Hyphomonas neptunium
ATCC 15444]
gi|122942650|sp|Q0C3U4|RPOZ_HYPNA RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|114739761|gb|ABI77886.1| DNA-directed RNA polymerase, omega subunit [Hyphomonas neptunium
ATCC 15444]
Length = 116
Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats.
Identities = 45/122 (36%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCI KV NRF LVLLA+HR R + +G+ T+D DK+ VV+LREIA ++
Sbjct: 1 MARVTVEDCIQKVPNRFELVLLAAHRARMIREGSPLTIDRDNDKDPVVSLREIAETSIDL 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNIVTPDKR 120
++E I +LQ +E + + +E D+L + R
Sbjct: 61 KVVKEALISNLQDIRPGEENEREADRVALQAAPAA-------TEDDVLRAYQAELE-SGR 112
Query: 121 DD 122
DD
Sbjct: 113 DD 114
>gi|118580814|ref|YP_902064.1| DNA-directed RNA polymerase subunit omega [Pelobacter propionicus
DSM 2379]
gi|166230340|sp|A1ARN6|RPOZ_PELPD RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|118503524|gb|ABL00007.1| DNA-directed RNA polymerase subunit omega [Pelobacter propionicus
DSM 2379]
Length = 70
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 34/64 (53%), Positives = 48/64 (75%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+DKV+NRFLLV+LAS R + L +GA+P VD ++ V +LREIA+G +
Sbjct: 1 MARVTVEDCLDKVENRFLLVMLASKRVKQLYKGARPLVDPKNNRLVVTSLREIAAGKVGY 60
Query: 61 DDLE 64
+ ++
Sbjct: 61 EMIK 64
>gi|82701186|ref|YP_410752.1| DNA-directed RNA polymerase, omega subunit [Nitrosospira
multiformis ATCC 25196]
gi|115305589|sp|Q2YD11|RPOZ_NITMU RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|82409251|gb|ABB73360.1| DNA-directed RNA polymerase subunit omega [Nitrosospira
multiformis ATCC 25196]
Length = 68
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 32/64 (50%), Positives = 43/64 (67%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TV+DC+ K+ NRF + L+A+ R R LS G P V+ +DK TV+ALREI+ G +
Sbjct: 1 MARITVDDCLKKIPNRFDMTLVATIRARQLSVGGSPMVEPARDKPTVIALREISQGLVGT 60
Query: 61 DDLE 64
D L
Sbjct: 61 DILT 64
>gi|262277013|ref|ZP_06054806.1| dna-directed rna polymerase subunit omega (rnap omegasubunit)
(transcriptase subunit omega) (rna polymerase omega
subunit) [alpha proteobacterium HIMB114]
gi|262224116|gb|EEY74575.1| dna-directed rna polymerase subunit omega (rnap omegasubunit)
(transcriptase subunit omega) (rna polymerase omega
subunit) [alpha proteobacterium HIMB114]
Length = 151
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 41/121 (33%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++ VDN++ LV+LA RT + G KP V DK TV++LREI L
Sbjct: 1 MARVTVEDCLEVVDNQYDLVILAKERTLQIGAGDKPMVSEDNDKKTVLSLREIGDKLLDQ 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNIVTPDKR 120
LE + ++H E + E E + G++S+ + P KR
Sbjct: 61 KTLETQTVDRAREHPE--DAMEQEEYDAPEGDAFEEIYKGEVSKSG------QAILPSKR 112
Query: 121 D 121
Sbjct: 113 S 113
>gi|253995557|ref|YP_003047621.1| DNA-directed RNA polymerase subunit omega [Methylotenera mobilis
JLW8]
gi|253982236|gb|ACT47094.1| DNA-directed RNA polymerase, omega subunit [Methylotenera mobilis
JLW8]
Length = 70
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 35/65 (53%), Positives = 48/65 (73%), Gaps = 2/65 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK--DKNTVVALREIASGTL 58
MAR TV+DC++K+ NRF L L+A++R R L GA+P V+V DK+TVVALREIA+G +
Sbjct: 1 MARITVDDCLEKIPNRFQLTLVAAYRARQLHNGAEPQVNVQNTRDKSTVVALREIAAGKV 60
Query: 59 SPDDL 63
+ L
Sbjct: 61 GVEIL 65
>gi|89901917|ref|YP_524388.1| DNA-directed RNA polymerase subunit omega [Rhodoferax
ferrireducens T118]
gi|123091166|sp|Q21TP6|RPOZ_RHOFD RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|89346654|gb|ABD70857.1| DNA-directed RNA polymerase, omega subunit [Rhodoferax
ferrireducens T118]
Length = 67
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++++ NRF LVL A++R R LSQG P VD K V ALREIA+G +
Sbjct: 1 MARITVEDCLEQIPNRFQLVLAATYRARMLSQGHAPKVDCKN-KPAVTALREIAAGKIGL 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|294084106|ref|YP_003550864.1| RNA polymerase subunit omega [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292663679|gb|ADE38780.1| RNA polymerase, omega subunit [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 136
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCI+K+ NRF LVL A R R + +G PT+D DKN V+ALREIA T+
Sbjct: 1 MARVTVEDCIEKIPNRFELVLTAGQRARGILKGDVPTIDRDNDKNPVIALREIAEETVDL 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNIVTPDKR 120
D L E I LQ+ +E ++ + + + + G S+ + E I + ++
Sbjct: 61 DVLSEGLIKKLQRLSVREEQETHDDAAIAAEVDLSEMV-GDYSDDEAQESGMQIGSSEEL 119
Query: 121 DD 122
++
Sbjct: 120 EE 121
>gi|121611135|ref|YP_998942.1| DNA-directed RNA polymerase subunit omega [Verminephrobacter
eiseniae EF01-2]
gi|166230372|sp|A1WQL7|RPOZ_VEREI RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|121555775|gb|ABM59924.1| DNA-directed RNA polymerase, omega subunit [Verminephrobacter
eiseniae EF01-2]
Length = 67
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++K+ NRF LVL A++R R L+QG P ++ K V ALREIA+G +
Sbjct: 1 MARITVEDCLEKIPNRFQLVLAATYRARMLNQGHAPRIESRN-KPGVTALREIAAGKVGL 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|171057419|ref|YP_001789768.1| DNA-directed RNA polymerase subunit omega [Leptothrix cholodnii
SP-6]
gi|226703148|sp|B1Y0M2|RPOZ_LEPCP RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|170774864|gb|ACB33003.1| DNA-directed RNA polymerase, omega subunit [Leptothrix cholodnii
SP-6]
Length = 67
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ K+ NRF LVL A++R R LSQG P V+ K V ALREIA+G +
Sbjct: 1 MARITVEDCLQKIPNRFQLVLAATYRARMLSQGHAPKVETKN-KPGVTALREIAAGAVGI 59
Query: 61 DDLEE 65
+ L +
Sbjct: 60 EMLRK 64
>gi|149927817|ref|ZP_01916068.1| DNA-directed RNA polymerase subunit omega [Limnobacter sp.
MED105]
gi|149823439|gb|EDM82670.1| DNA-directed RNA polymerase subunit omega [Limnobacter sp.
MED105]
Length = 68
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/64 (53%), Positives = 44/64 (68%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ K+ NRF + L A++R R L+QG P V KDK TV ALREIA+G +
Sbjct: 1 MARITVEDCLKKIPNRFDMALCATYRARMLAQGHTPKVKSDKDKPTVTALREIAAGEIGI 60
Query: 61 DDLE 64
+ L+
Sbjct: 61 EMLK 64
>gi|152983237|ref|YP_001353017.1| DNA-directed RNA polymerase subunit omega [Janthinobacterium sp.
Marseille]
gi|166230324|sp|A6SXM0|RPOZ_JANMA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|151283314|gb|ABR91724.1| DNA-directed RNA polymerase (omega chain) [Janthinobacterium sp.
Marseille]
Length = 67
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR T+EDC+ ++ NRF L L A++R R L QG P VD KDK TV+ALREIA+G +
Sbjct: 1 MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHTPKVD-AKDKPTVIALREIAAGHVGI 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|291612870|ref|YP_003523027.1| DNA-directed RNA polymerase subunit omega [Sideroxydans
lithotrophicus ES-1]
gi|291582982|gb|ADE10640.1| DNA-directed RNA polymerase, omega subunit [Sideroxydans
lithotrophicus ES-1]
Length = 68
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/63 (52%), Positives = 42/63 (66%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ + NRF L L A++R R L+ GA V+ KDK TVVALREI+ G +
Sbjct: 1 MARITVEDCMKHIPNRFELTLAAAYRARQLANGAGYLVENSKDKATVVALREISEGKVGI 60
Query: 61 DDL 63
+ L
Sbjct: 61 EIL 63
>gi|260219856|emb|CBA26806.1| DNA-directed RNA polymerase subunit omega [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 67
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++++ NRF LVL A++R R LSQG P ++ K V ALREIA+G +
Sbjct: 1 MARITVEDCLEQIPNRFQLVLAATYRARMLSQGHTPKIESKN-KPGVTALREIAAGKVGL 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|300311445|ref|YP_003775537.1| DNA-directed RNA polymerase subunit omega [Herbaspirillum
seropedicae SmR1]
gi|300074230|gb|ADJ63629.1| DNA-directed RNA polymerase omega subunit protein [Herbaspirillum
seropedicae SmR1]
Length = 67
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR T+EDC+ ++ NRF L L A++R R L QG P VD KDK TV ALREIA+G +
Sbjct: 1 MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHTPKVD-AKDKPTVTALREIAAGKVGV 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|300113777|ref|YP_003760352.1| DNA-directed RNA polymerase subunit omega [Nitrosococcus watsonii
C-113]
gi|299539714|gb|ADJ28031.1| DNA-directed RNA polymerase, omega subunit [Nitrosococcus
watsonii C-113]
Length = 86
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 37/60 (61%), Positives = 43/60 (71%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+D ++NRFLLVL A+ R R L+ GA PTV DK TVVALREIA G +
Sbjct: 1 MARLTVEDCVDNINNRFLLVLAAAKRARQLAMGATPTVPWDNDKPTVVALREIAEGHIDV 60
>gi|57239028|ref|YP_180164.1| putative DNA-directed RNA polymerase omega chain [Ehrlichia
ruminantium str. Welgevonden]
gi|58578969|ref|YP_197181.1| putative DNA-directed RNA polymerase omega chain [Ehrlichia
ruminantium str. Welgevonden]
gi|81557327|sp|Q5HBN0|RPOZ_EHRRW RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|57161107|emb|CAH58016.1| putative DNA-directed RNA polymerase omega chain [Ehrlichia
ruminantium str. Welgevonden]
gi|58417595|emb|CAI26799.1| Probable DNA-directed RNA polymerase omega chain [Ehrlichia
ruminantium str. Welgevonden]
Length = 132
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 55/119 (46%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVE+C+ + +N+F LV+LAS R L+ GA P V KNT++AL EIA+ L
Sbjct: 1 MARLTVEECMGRTNNKFKLVILASQRAHDLNSGASPVVKHKNSKNTIIALTEIANEQLDV 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNIVTPDK 119
L + +K++E + S + S D L + V K
Sbjct: 61 HLLFNLAVQRCRKYMEKFINSDDSYVVHKSKDNIDIFQKNATSNFDELGANSLNVENSK 119
>gi|253997765|ref|YP_003049828.1| DNA-directed RNA polymerase subunit omega [Methylovorus sp.
SIP3-4]
gi|313199829|ref|YP_004038487.1| DNA-directed RNA polymerase subunit omega [Methylovorus sp.
MP688]
gi|253984444|gb|ACT49301.1| DNA-directed RNA polymerase, omega subunit [Methylovorus sp.
SIP3-4]
gi|312439145|gb|ADQ83251.1| DNA-directed RNA polymerase, omega subunit [Methylovorus sp.
MP688]
Length = 70
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 49/65 (75%), Gaps = 2/65 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVG--KDKNTVVALREIASGTL 58
MAR TV+DC++K+ NRF L L+A++R+R L+ G++P V+ KDK TV+ALREIASG +
Sbjct: 1 MARMTVDDCLEKIPNRFQLTLVAAYRSRQLANGSEPLVNTHGQKDKPTVLALREIASGKV 60
Query: 59 SPDDL 63
+ L
Sbjct: 61 GLEVL 65
>gi|329901878|ref|ZP_08272965.1| DNA-directed RNA polymerase omega subunit [Oxalobacteraceae
bacterium IMCC9480]
gi|327548970|gb|EGF33587.1| DNA-directed RNA polymerase omega subunit [Oxalobacteraceae
bacterium IMCC9480]
Length = 67
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 35/65 (53%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR T+EDC + NRF L L A++R R L QG P VD KDK TVVALREIA+G +
Sbjct: 1 MARITIEDCTKYIPNRFQLTLAATYRARQLLQGHTPKVD-AKDKPTVVALREIAAGKVGI 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|58617026|ref|YP_196225.1| putative DNA-directed RNA polymerase omega chain [Ehrlichia
ruminantium str. Gardel]
gi|75432801|sp|Q5FHG7|RPOZ_EHRRG RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|58416638|emb|CAI27751.1| Probable DNA-directed RNA polymerase omega chain [Ehrlichia
ruminantium str. Gardel]
Length = 132
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 55/119 (46%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVE+C+ + +N+F LV+LAS R L+ GA P V KNT+VAL EIA+ L
Sbjct: 1 MARLTVEECMGRTNNKFKLVILASQRAHDLNSGASPVVKHKNSKNTIVALTEIANEQLDV 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNIVTPDK 119
L + +K++E + S + S D L + V K
Sbjct: 61 HLLFNLAVQRCRKYMEKFINSDDSYVVHKSKDNIDIFQKNATSNFDELGANSLNVENSK 119
>gi|296535936|ref|ZP_06898086.1| DNA-directed RNA polymerase subunit omega [Roseomonas cervicalis
ATCC 49957]
gi|296263730|gb|EFH10205.1| DNA-directed RNA polymerase subunit omega [Roseomonas cervicalis
ATCC 49957]
Length = 133
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 44/71 (61%), Positives = 53/71 (74%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCI K+ NRF LVLLA+ R R++S+G + T+D DKN VVALREIA T+S
Sbjct: 1 MARVTVEDCILKIPNRFELVLLAAQRARNISRGEELTLDRDNDKNPVVALREIADETVSL 60
Query: 61 DDLEEDFIHSL 71
D LE+D I SL
Sbjct: 61 DGLEQDLIKSL 71
>gi|224823881|ref|ZP_03696990.1| DNA-directed RNA polymerase, omega subunit [Lutiella nitroferrum
2002]
gi|224604336|gb|EEG10510.1| DNA-directed RNA polymerase, omega subunit [Lutiella nitroferrum
2002]
Length = 68
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 32/63 (50%), Positives = 47/63 (74%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TV+DC+D++ NRF L L A++R R ++ G+ P V+ G+DK TVVALREI++G +
Sbjct: 1 MARITVDDCLDRIQNRFDLTLAAAYRARQVASGSAPFVEAGRDKPTVVALREISAGHVGT 60
Query: 61 DDL 63
+ L
Sbjct: 61 EIL 63
>gi|124267901|ref|YP_001021905.1| DNA-directed RNA polymerase subunit omega [Methylibium
petroleiphilum PM1]
gi|166230330|sp|A2SJD1|RPOZ_METPP RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|124260676|gb|ABM95670.1| DNA-directed RNA polymerase omega chain [Methylibium
petroleiphilum PM1]
Length = 67
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ K+ NRF LVL A++R R LSQG P V+ K V ALREIA G +
Sbjct: 1 MARITVEDCLTKIPNRFQLVLAATYRARMLSQGHAPKVESKN-KPGVTALREIAEGHVGL 59
Query: 61 DDLEE 65
+ L +
Sbjct: 60 EMLRK 64
>gi|121593368|ref|YP_985264.1| DNA-directed RNA polymerase subunit omega [Acidovorax sp. JS42]
gi|222110077|ref|YP_002552341.1| DNA-directed RNA polymerase subunit omega [Acidovorax ebreus
TPSY]
gi|319761753|ref|YP_004125690.1| DNA-directed RNA polymerase, omega subunit [Alicycliphilus
denitrificans BC]
gi|330826533|ref|YP_004389836.1| DNA-directed RNA polymerase subunit omega [Alicycliphilus
denitrificans K601]
gi|166229339|sp|A1W4L3|RPOZ_ACISJ RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|254809240|sp|B9MEK5|RPOZ_ACIET RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|120605448|gb|ABM41188.1| DNA-directed RNA polymerase subunit omega [Acidovorax sp. JS42]
gi|221729521|gb|ACM32341.1| DNA-directed RNA polymerase, omega subunit [Acidovorax ebreus
TPSY]
gi|317116314|gb|ADU98802.1| DNA-directed RNA polymerase, omega subunit [Alicycliphilus
denitrificans BC]
gi|329311905|gb|AEB86320.1| DNA-directed RNA polymerase subunit omega [Alicycliphilus
denitrificans K601]
Length = 67
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++++ NRF LVL A++R R LSQG P ++ K V ALREIA+G +
Sbjct: 1 MARITVEDCLEQIPNRFQLVLAATYRARMLSQGHAPKIESRN-KPAVTALREIAAGKVGL 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|325982005|ref|YP_004294407.1| DNA-directed RNA polymerase, omega subunit [Nitrosomonas sp.
AL212]
gi|325531524|gb|ADZ26245.1| DNA-directed RNA polymerase, omega subunit [Nitrosomonas sp.
AL212]
Length = 68
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TV+DC+ K+ NRF + L+A+ R R L+ G+ P V+ +DK TVVALRE+A G +
Sbjct: 1 MARITVDDCLKKIPNRFDMTLVATARARQLAIGSAPLVEAARDKPTVVALREVAHGKVGL 60
Query: 61 DDL 63
+ L
Sbjct: 61 EIL 63
>gi|257455051|ref|ZP_05620295.1| DNA-directed RNA polymerase, omega subunit [Enhydrobacter
aerosaccus SK60]
gi|257447564|gb|EEV22563.1| DNA-directed RNA polymerase, omega subunit [Enhydrobacter
aerosaccus SK60]
Length = 88
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 32/66 (48%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQG-AKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ + NRF L+L+AS R R +++G ++P V+ DK TV+ALREIA G ++
Sbjct: 1 MARVTVEDCLENIHNRFDLILIASKRARQIARGVSEPMVERENDKPTVLALREIAEGLVT 60
Query: 60 PDDLEE 65
+ L +
Sbjct: 61 KEILNQ 66
>gi|160897470|ref|YP_001563052.1| DNA-directed RNA polymerase subunit omega [Delftia acidovorans
SPH-1]
gi|226703119|sp|A9BTA2|RPOZ_DELAS RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|160363054|gb|ABX34667.1| DNA-directed RNA polymerase, omega subunit [Delftia acidovorans
SPH-1]
Length = 67
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++++ NRF LVL A++R R LSQG P ++ K V ALREIA G +
Sbjct: 1 MARITVEDCLEQIPNRFQLVLAATYRARMLSQGHTPRIETKN-KPGVTALREIAEGKVGL 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|120612231|ref|YP_971909.1| DNA-directed RNA polymerase subunit omega [Acidovorax citrulli
AAC00-1]
gi|326318291|ref|YP_004235963.1| DNA-directed RNA polymerase subunit omega [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|166229335|sp|A1TT47|RPOZ_ACIAC RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|120590695|gb|ABM34135.1| DNA-directed RNA polymerase subunit omega [Acidovorax citrulli
AAC00-1]
gi|323375127|gb|ADX47396.1| DNA-directed RNA polymerase subunit omega [Acidovorax avenae
subsp. avenae ATCC 19860]
Length = 67
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++ + NRF LVL A++R R LSQG P ++ K V ALREIA G +
Sbjct: 1 MARITVEDCLEHIPNRFQLVLAATYRARMLSQGHAPKIESRN-KPAVTALREIAEGKIGL 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|77918890|ref|YP_356705.1| DNA-directed RNA polymerase, omega subunit [Pelobacter
carbinolicus DSM 2380]
gi|115305593|sp|Q3A522|RPOZ_PELCD RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|77544973|gb|ABA88535.1| DNA-directed RNA polymerase subunit omega [Pelobacter
carbinolicus DSM 2380]
Length = 68
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVG-KDKNTVVALREIASGTLS 59
MAR TVEDC+ ++ NRFLLV++A+ RT+ L +G +P ++ +K V LREIA+G +
Sbjct: 1 MARITVEDCLQQIPNRFLLVMVAAKRTKQLYKGGQPLIENKSNNKRVVHCLREIAAGKVD 60
Query: 60 PDD 62
+
Sbjct: 61 YEI 63
>gi|73542158|ref|YP_296678.1| DNA-directed RNA polymerase subunit omega [Ralstonia eutropha
JMP134]
gi|94309802|ref|YP_583012.1| DNA-directed RNA polymerase subunit omega [Cupriavidus
metallidurans CH34]
gi|113866978|ref|YP_725467.1| DNA-directed RNA polymerase subunit omega [Ralstonia eutropha
H16]
gi|194289078|ref|YP_002004985.1| DNA-directed RNA polymerase subunit omega [Cupriavidus
taiwanensis LMG 19424]
gi|118587616|sp|Q46YE9|RPOZ_RALEJ RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|122988020|sp|Q1LQ33|RPOZ_RALME RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|123134287|sp|Q0KD22|RPOZ_RALEH RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703117|sp|B3R3N5|RPOZ_CUPTR RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|72119571|gb|AAZ61834.1| RNA polymerase, omega subunit [Ralstonia eutropha JMP134]
gi|93353654|gb|ABF07743.1| DNA-directed RNA polymerase omega subunit [Cupriavidus
metallidurans CH34]
gi|113525754|emb|CAJ92099.1| DNA-directed RNA polymerase omega subunit [Ralstonia eutropha
H16]
gi|193222913|emb|CAQ68918.1| DNA-DIRECTED RNA POLYMERASE (OMEGA CHAIN) PROTEIN [Cupriavidus
taiwanensis LMG 19424]
Length = 67
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 36/65 (55%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ + NRF L L A++R R L QG P V+ KDK TVVALREIASG +
Sbjct: 1 MARITVEDCLKHIPNRFELALAATYRARQLVQGHTPKVE-AKDKPTVVALREIASGQVGI 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|332529681|ref|ZP_08405635.1| DNA-directed RNA polymerase subunit omega [Hylemonella gracilis
ATCC 19624]
gi|332040702|gb|EGI77074.1| DNA-directed RNA polymerase subunit omega [Hylemonella gracilis
ATCC 19624]
Length = 67
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ ++ NRF LVL A++R R LSQG P ++ K V ALREIA G +
Sbjct: 1 MARITVEDCLQQIPNRFQLVLAATYRARMLSQGHAPKIESKN-KPGVTALREIAEGKVGL 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|34499224|ref|NP_903439.1| DNA-directed RNA polymerase subunit omega [Chromobacterium
violaceum ATCC 12472]
gi|41688633|sp|Q7NRL2|RPOZ_CHRVO RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|34105075|gb|AAQ61431.1| DNA-directed RNA polymerase omega chain [Chromobacterium
violaceum ATCC 12472]
Length = 68
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TV+DC+D++ NRF L L A++R R ++ GA V+ G+ K TV+ALREIA+G +
Sbjct: 1 MARITVDDCLDRIQNRFDLTLAAAYRARQVASGASAFVEPGRHKPTVIALREIAAGHVGK 60
Query: 61 DDL 63
+ L
Sbjct: 61 EVL 63
>gi|198282855|ref|YP_002219176.1| DNA-directed RNA polymerase subunit omega [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218668020|ref|YP_002425056.1| DNA-directed RNA polymerase, omega subunit [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|226699534|sp|B7J583|RPOZ_ACIF2 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226699535|sp|B5EN39|RPOZ_ACIF5 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|198247376|gb|ACH82969.1| DNA-directed RNA polymerase, omega subunit [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218520233|gb|ACK80819.1| DNA-directed RNA polymerase, omega subunit [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 91
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 38/67 (56%), Positives = 50/67 (74%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++ VDNRF L L+A+ R R L+ GA P V+ G+DKNTV+ALRE+A+G +S
Sbjct: 1 MARVTVEDCLEHVDNRFELTLVAARRARQLASGAAPEVEPGRDKNTVIALREVAAGKVSR 60
Query: 61 DDLEEDF 67
L+E
Sbjct: 61 AILDEQM 67
>gi|17546873|ref|NP_520275.1| DNA-directed RNA polymerase subunit omega [Ralstonia solanacearum
GMI1000]
gi|83746449|ref|ZP_00943500.1| DNA-directed RNA polymerase omega chain [Ralstonia solanacearum
UW551]
gi|207723813|ref|YP_002254211.1| dna-directed rna polymerase omega chain (rnap omegasubunit)
(transcriptase omega chain) (rna polymerase omega
subunit) protein [Ralstonia solanacearum MolK2]
gi|207743762|ref|YP_002260154.1| dna-directed rna polymerase omega chain (rnap omegasubunit)
(transcriptase omega chain) (rna polymerase omega
subunit) protein [Ralstonia solanacearum IPO1609]
gi|300690929|ref|YP_003751924.1| DNA-directed RNA polymerase subunit omega [Ralstonia solanacearum
PSI07]
gi|20978683|sp|Q8XXG0|RPOZ_RALSO RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|17429173|emb|CAD15861.1| probable dna-directed rna polymerase omega chain (rnap
omegasubunit) (transcriptase omega chain) (rna
polymerase omega subunit) protein [Ralstonia
solanacearum GMI1000]
gi|83726780|gb|EAP73907.1| DNA-directed RNA polymerase omega chain [Ralstonia solanacearum
UW551]
gi|206589018|emb|CAQ35980.1| dna-directed rna polymerase omega chain (rnap omegasubunit)
(transcriptase omega chain) (rna polymerase omega
subunit) protein [Ralstonia solanacearum MolK2]
gi|206595161|emb|CAQ62088.1| dna-directed rna polymerase omega chain (rnap omegasubunit)
(transcriptase omega chain) (rna polymerase omega
subunit) protein [Ralstonia solanacearum IPO1609]
gi|299077989|emb|CBJ50630.1| DNA-directed RNA polymerase subunit omega [Ralstonia solanacearum
PSI07]
Length = 67
Score = 99 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 35/65 (53%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ ++ NRF L L A++R R L QG P VD KDK TV ALREIA+G +
Sbjct: 1 MARITVEDCLKQIPNRFELALAATYRARQLVQGHTPKVD-AKDKPTVTALREIAAGQVGI 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|296115037|ref|ZP_06833679.1| DNA-directed RNA polymerase subunit omega [Gluconacetobacter
hansenii ATCC 23769]
gi|295978374|gb|EFG85110.1| DNA-directed RNA polymerase subunit omega [Gluconacetobacter
hansenii ATCC 23769]
Length = 131
Score = 99 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 47/125 (37%), Positives = 66/125 (52%), Gaps = 10/125 (8%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+++V NRF LVLLA+ R R LS+G + T+D DKN VVALREIA T+S
Sbjct: 1 MARVTVEDCVERVPNRFELVLLAAQRARALSRGEELTIDRDNDKNPVVALREIADQTISL 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTEN----------SDFSWHKPEALSFGQMSEGDLLEG 110
D ++ D + SL + E + D + + E+ M+ +L
Sbjct: 61 DQVKSDLLRSLARAPEPEPADEEVVDLIPTEQNIFGLQDVSAEEESRHTAGMTAEELEAT 120
Query: 111 INNIV 115
I +
Sbjct: 121 IEAEL 125
>gi|307824306|ref|ZP_07654532.1| DNA-directed RNA polymerase, omega subunit [Methylobacter
tundripaludum SV96]
gi|307734686|gb|EFO05537.1| DNA-directed RNA polymerase, omega subunit [Methylobacter
tundripaludum SV96]
Length = 81
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/63 (61%), Positives = 50/63 (79%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR T+EDC++ V+NRF LVLLAS R R LS GA V GKDK+TVVALREIA+G ++P
Sbjct: 1 MARVTIEDCLENVENRFKLVLLASTRARQLSHGATEFVPRGKDKDTVVALREIAAGHVTP 60
Query: 61 DDL 63
+++
Sbjct: 61 ENV 63
>gi|239817297|ref|YP_002946207.1| DNA-directed RNA polymerase subunit omega [Variovorax paradoxus
S110]
gi|259494515|sp|C5CYY0|RPOZ_VARPS RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|239803874|gb|ACS20941.1| DNA-directed RNA polymerase, omega subunit [Variovorax paradoxus
S110]
Length = 67
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ ++ NRF LVL A++R R LSQG P ++ K V ALREIA G +
Sbjct: 1 MARITVEDCLLQIPNRFQLVLAATYRARMLSQGHAPKIESKN-KPAVTALREIAEGKIGL 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|241764059|ref|ZP_04762097.1| DNA-directed RNA polymerase, omega subunit [Acidovorax
delafieldii 2AN]
gi|241366590|gb|EER61071.1| DNA-directed RNA polymerase, omega subunit [Acidovorax
delafieldii 2AN]
Length = 67
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++K+ NRF LVL A++R R LSQG P ++ K V ALREIA G +
Sbjct: 1 MARITVEDCLEKIPNRFQLVLAATYRARMLSQGHAPRIESRN-KPAVTALREIAEGKVGL 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|189425344|ref|YP_001952521.1| DNA-directed RNA polymerase subunit omega [Geobacter lovleyi SZ]
gi|226703139|sp|B3E4R5|RPOZ_GEOLS RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|189421603|gb|ACD96001.1| DNA-directed RNA polymerase, omega subunit [Geobacter lovleyi SZ]
Length = 68
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 34/61 (55%), Positives = 48/61 (78%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++KVDNRF+LV++AS R + L +GAKP +D +++ V +LREIA+G LS
Sbjct: 1 MARVTVEDCLEKVDNRFMLVMMASKRVKQLYKGAKPLIDPKNNRHVVTSLREIAAGKLSA 60
Query: 61 D 61
+
Sbjct: 61 E 61
>gi|319795593|ref|YP_004157233.1| DNA-directed RNA polymerase, omega subunit [Variovorax paradoxus
EPS]
gi|315598056|gb|ADU39122.1| DNA-directed RNA polymerase, omega subunit [Variovorax paradoxus
EPS]
Length = 67
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ ++ NRF LVL A++R R LSQG P ++ K V ALREIA G +
Sbjct: 1 MARITVEDCLVQIPNRFQLVLAATYRARMLSQGHAPKIESKN-KPAVTALREIAEGKIGI 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|319779467|ref|YP_004130380.1| DNA-directed RNA polymerase omega subunit [Taylorella
equigenitalis MCE9]
gi|317109491|gb|ADU92237.1| DNA-directed RNA polymerase omega subunit [Taylorella
equigenitalis MCE9]
Length = 68
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 45/65 (69%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR T++DC++ + NRF L L+A++R R ++ G P VD+ DK TV+ALREIA G
Sbjct: 1 MARITIDDCLEYIPNRFDLTLVATYRAREIATGHTPKVDLQNDKPTVLALREIAEGKTGI 60
Query: 61 DDLEE 65
+ L++
Sbjct: 61 EMLKK 65
>gi|73666909|ref|YP_302925.1| RNA polymerase, omega subunit [Ehrlichia canis str. Jake]
gi|108884782|sp|Q3YSH8|RPOZ_EHRCJ RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|72394050|gb|AAZ68327.1| DNA-directed RNA polymerase subunit omega [Ehrlichia canis str.
Jake]
Length = 138
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVE+C+ + +N+F LV+LAS R L+ GA P + KNTV+AL+EIA+ L
Sbjct: 1 MARLTVEECMGRTNNKFKLVILASQRAHDLNSGACPVIKHKNGKNTVIALKEIAAKQLDV 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPT 84
L + +K++E
Sbjct: 61 SSLFNLSVQRCRKYMEKFINSDEQ 84
>gi|39997335|ref|NP_953286.1| DNA-directed RNA polymerase, subunit omega [Geobacter
sulfurreducens PCA]
gi|81701820|sp|Q74AW2|RPOZ_GEOSL RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|39984226|gb|AAR35613.1| DNA-directed RNA polymerase, omega subunit [Geobacter
sulfurreducens PCA]
gi|298506272|gb|ADI84995.1| DNA-directed RNA polymerase, omega subunit [Geobacter
sulfurreducens KN400]
Length = 69
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/62 (58%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK-DKNTVVALREIASGTLS 59
MAR TVEDC+DKVDNRFLLV+LAS R + L +GA+P +D +KN V++LREIA+G +
Sbjct: 1 MARVTVEDCLDKVDNRFLLVMLASKRVKQLYKGARPLIDNRGANKNVVISLREIAAGKVG 60
Query: 60 PD 61
+
Sbjct: 61 YE 62
>gi|171315537|ref|ZP_02904773.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
ambifaria MEX-5]
gi|172059927|ref|YP_001807579.1| DNA-directed RNA polymerase subunit omega [Burkholderia ambifaria
MC40-6]
gi|226699550|sp|B1YUY0|RPOZ_BURA4 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|171099374|gb|EDT44112.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
ambifaria MEX-5]
gi|171992444|gb|ACB63363.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
ambifaria MC40-6]
Length = 67
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ ++ NRF L L A++R R L+QG P ++ +DK TVVALREIASG +
Sbjct: 1 MARITVEDCLKQIPNRFELALAATYRARQLAQGHTPKIES-RDKPTVVALREIASGHVGV 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|68171789|ref|ZP_00545132.1| RNA polymerase, omega subunit [Ehrlichia chaffeensis str.
Sapulpa]
gi|88658402|ref|YP_507594.1| DNA-directed RNA polymerase, omega subunit [Ehrlichia chaffeensis
str. Arkansas]
gi|115305583|sp|Q2GG39|RPOZ_EHRCR RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|67998790|gb|EAM85499.1| RNA polymerase, omega subunit [Ehrlichia chaffeensis str.
Sapulpa]
gi|88599859|gb|ABD45328.1| DNA-directed RNA polymerase, omega subunit [Ehrlichia chaffeensis
str. Arkansas]
Length = 138
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 47/83 (56%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVE+C+ + +N+F LV+LAS R L+ GA P + KNTV+AL+EIA+ L
Sbjct: 1 MARLTVEECMGRTNNKFKLVILASQRAHDLNSGACPVIKYKNGKNTVIALKEIAAKQLDV 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSP 83
L + +K++E
Sbjct: 61 SSLFNLSVQRCRKYMEKFINSDE 83
>gi|312795405|ref|YP_004028327.1| DNA-directed RNA polymerase omega chain [Burkholderia rhizoxinica
HKI 454]
gi|312167180|emb|CBW74183.1| DNA-directed RNA polymerase omega chain (EC 2.7.7.6)
[Burkholderia rhizoxinica HKI 454]
Length = 67
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++ + NRF L L A++R R L+QG P ++ KDK TV+ALREIA G +
Sbjct: 1 MARITVEDCLEHIPNRFELALAATYRARQLAQGHTPKIES-KDKPTVLALREIAEGKVGI 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|187929354|ref|YP_001899841.1| DNA-directed RNA polymerase subunit omega [Ralstonia pickettii
12J]
gi|241663547|ref|YP_002981907.1| DNA-directed RNA polymerase subunit omega [Ralstonia pickettii
12D]
gi|309781791|ref|ZP_07676524.1| DNA-directed RNA polymerase, omega subunit [Ralstonia sp.
5_7_47FAA]
gi|226703163|sp|B2U8D3|RPOZ_RALPJ RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|187726244|gb|ACD27409.1| DNA-directed RNA polymerase, omega subunit [Ralstonia pickettii
12J]
gi|240865574|gb|ACS63235.1| DNA-directed RNA polymerase, omega subunit [Ralstonia pickettii
12D]
gi|308919432|gb|EFP65096.1| DNA-directed RNA polymerase, omega subunit [Ralstonia sp.
5_7_47FAA]
Length = 67
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/65 (55%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ ++ NRF L L A++R R L QG P VD KDK TV ALREIASG +
Sbjct: 1 MARITVEDCLKQIPNRFELALAATYRARQLVQGHTPKVD-AKDKPTVTALREIASGQVGI 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|261854664|ref|YP_003261947.1| DNA-directed RNA polymerase subunit omega [Halothiobacillus
neapolitanus c2]
gi|261835133|gb|ACX94900.1| DNA-directed RNA polymerase, omega subunit [Halothiobacillus
neapolitanus c2]
Length = 107
Score = 99.2 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/106 (36%), Positives = 60/106 (56%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ K+ NRF LVL+A+ R R + QGA+P V +GK+K V+ALREI G +
Sbjct: 1 MARVTVEDCLVKIPNRFELVLMAARRARQIEQGAEPLVPMGKEKPVVIALREIGEGKIDQ 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGD 106
++E H + +I E + E + F+ ++ + +
Sbjct: 61 ARIDEIQEHMVVLRSQISEAEIRAELAQFADEDEGSVRRPATTSDE 106
>gi|238026487|ref|YP_002910718.1| DNA-directed RNA polymerase subunit omega [Burkholderia glumae
BGR1]
gi|330815850|ref|YP_004359555.1| DNA-directed RNA polymerase omega subunit [Burkholderia gladioli
BSR3]
gi|237875681|gb|ACR28014.1| DNA-directed RNA polymerase omega subunit [Burkholderia glumae
BGR1]
gi|327368243|gb|AEA59599.1| DNA-directed RNA polymerase omega subunit [Burkholderia gladioli
BSR3]
Length = 67
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ ++ NRF L L A++R R L+QG P ++ +DK TVVALREIA+G +
Sbjct: 1 MARITVEDCLKQIPNRFELALAATYRARQLAQGHTPKIES-RDKPTVVALREIAAGQVGI 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|78065580|ref|YP_368349.1| DNA-directed RNA polymerase subunit omega [Burkholderia sp. 383]
gi|83720583|ref|YP_442128.1| DNA-directed RNA polymerase subunit omega [Burkholderia
thailandensis E264]
gi|91784885|ref|YP_560091.1| DNA-directed RNA polymerase subunit omega [Burkholderia
xenovorans LB400]
gi|107022079|ref|YP_620406.1| DNA-directed RNA polymerase subunit omega [Burkholderia
cenocepacia AU 1054]
gi|116689023|ref|YP_834646.1| DNA-directed RNA polymerase subunit omega [Burkholderia
cenocepacia HI2424]
gi|134295028|ref|YP_001118763.1| DNA-directed RNA polymerase subunit omega [Burkholderia
vietnamiensis G4]
gi|167563694|ref|ZP_02356610.1| DNA-directed RNA polymerase subunit omega [Burkholderia
oklahomensis EO147]
gi|167570844|ref|ZP_02363718.1| DNA-directed RNA polymerase subunit omega [Burkholderia
oklahomensis C6786]
gi|167580999|ref|ZP_02373873.1| DNA-directed RNA polymerase subunit omega [Burkholderia
thailandensis TXDOH]
gi|167619076|ref|ZP_02387707.1| DNA-directed RNA polymerase subunit omega [Burkholderia
thailandensis Bt4]
gi|167837499|ref|ZP_02464382.1| DNA-directed RNA polymerase subunit omega [Burkholderia
thailandensis MSMB43]
gi|170693641|ref|ZP_02884799.1| DNA-directed RNA polymerase, omega subunit [Burkholderia graminis
C4D1M]
gi|170732312|ref|YP_001764259.1| DNA-directed RNA polymerase subunit omega [Burkholderia
cenocepacia MC0-3]
gi|186475436|ref|YP_001856906.1| DNA-directed RNA polymerase subunit omega [Burkholderia phymatum
STM815]
gi|187925058|ref|YP_001896700.1| DNA-directed RNA polymerase subunit omega [Burkholderia
phytofirmans PsJN]
gi|206561356|ref|YP_002232121.1| DNA-directed RNA polymerase subunit omega [Burkholderia
cenocepacia J2315]
gi|254246041|ref|ZP_04939362.1| RNA polymerase, omega subunit [Burkholderia cenocepacia PC184]
gi|254252972|ref|ZP_04946290.1| DNA-directed RNA polymerase subunit K/omega [Burkholderia dolosa
AUO158]
gi|257138316|ref|ZP_05586578.1| DNA-directed RNA polymerase subunit omega [Burkholderia
thailandensis E264]
gi|296160044|ref|ZP_06842864.1| DNA-directed RNA polymerase, omega subunit [Burkholderia sp.
Ch1-1]
gi|307730697|ref|YP_003907921.1| DNA-directed RNA polymerase subunit omega [Burkholderia sp.
CCGE1003]
gi|323527033|ref|YP_004229186.1| DNA-directed RNA polymerase subunit omega [Burkholderia sp.
CCGE1001]
gi|115305577|sp|Q39IL1|RPOZ_BURS3 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|115305578|sp|Q2SY71|RPOZ_BURTA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|123245178|sp|Q1BY72|RPOZ_BURCA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|123358532|sp|Q13V50|RPOZ_BURXL RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166229352|sp|A0K5H6|RPOZ_BURCH RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166229411|sp|A4JCC5|RPOZ_BURVG RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226699551|sp|B1JXM5|RPOZ_BURCC RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226699552|sp|B4EBP5|RPOZ_BURCJ RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226701077|sp|B2T6B2|RPOZ_BURPP RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226734918|sp|B2JEI3|RPOZ_BURP8 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|77966325|gb|ABB07705.1| DNA-directed RNA polymerase subunit omega [Burkholderia sp. 383]
gi|83654408|gb|ABC38471.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
thailandensis E264]
gi|91688839|gb|ABE32039.1| DNA-directed RNA polymerase subunit omega [Burkholderia
xenovorans LB400]
gi|105892268|gb|ABF75433.1| DNA-directed RNA polymerase subunit omega [Burkholderia
cenocepacia AU 1054]
gi|116647112|gb|ABK07753.1| DNA-directed RNA polymerase subunit omega [Burkholderia
cenocepacia HI2424]
gi|124870817|gb|EAY62533.1| RNA polymerase, omega subunit [Burkholderia cenocepacia PC184]
gi|124895581|gb|EAY69461.1| DNA-directed RNA polymerase subunit K/omega [Burkholderia dolosa
AUO158]
gi|134138185|gb|ABO53928.1| DNA-directed RNA polymerase subunit omega [Burkholderia
vietnamiensis G4]
gi|169815554|gb|ACA90137.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
cenocepacia MC0-3]
gi|170141423|gb|EDT09593.1| DNA-directed RNA polymerase, omega subunit [Burkholderia graminis
C4D1M]
gi|184191895|gb|ACC69860.1| DNA-directed RNA polymerase, omega subunit [Burkholderia phymatum
STM815]
gi|187716252|gb|ACD17476.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
phytofirmans PsJN]
gi|198037398|emb|CAR53333.1| DNA-directed RNA polymerase omega chain [Burkholderia cenocepacia
J2315]
gi|295889790|gb|EFG69588.1| DNA-directed RNA polymerase, omega subunit [Burkholderia sp.
Ch1-1]
gi|307585232|gb|ADN58630.1| DNA-directed RNA polymerase, omega subunit [Burkholderia sp.
CCGE1003]
gi|323384035|gb|ADX56126.1| DNA-directed RNA polymerase, omega subunit [Burkholderia sp.
CCGE1001]
gi|325524708|gb|EGD02696.1| DNA-directed RNA polymerase subunit omega [Burkholderia sp.
TJI49]
Length = 67
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ ++ NRF L L A++R R L+QG P ++ +DK TVVALREIA+G +
Sbjct: 1 MARITVEDCLKQIPNRFELALAATYRARQLAQGHTPKIES-RDKPTVVALREIAAGQVGV 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|161525570|ref|YP_001580582.1| DNA-directed RNA polymerase subunit omega [Burkholderia
multivorans ATCC 17616]
gi|167586478|ref|ZP_02378866.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
ubonensis Bu]
gi|189349702|ref|YP_001945330.1| DNA-directed RNA polymerase subunit omega [Burkholderia
multivorans ATCC 17616]
gi|221201204|ref|ZP_03574244.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
multivorans CGD2M]
gi|221206342|ref|ZP_03579355.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
multivorans CGD2]
gi|221213622|ref|ZP_03586596.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
multivorans CGD1]
gi|226699553|sp|A9AEQ4|RPOZ_BURM1 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|160342999|gb|ABX16085.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
multivorans ATCC 17616]
gi|189333724|dbj|BAG42794.1| DNA-directed RNA polymerase subunit omega [Burkholderia
multivorans ATCC 17616]
gi|221166411|gb|EED98883.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
multivorans CGD1]
gi|221173651|gb|EEE06085.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
multivorans CGD2]
gi|221179054|gb|EEE11461.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
multivorans CGD2M]
Length = 67
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ ++ NRF L L A++R R L+QG P ++ +DK TVVALREIA+G +
Sbjct: 1 MARITVEDCLKQIPNRFELALAATYRARQLAQGHTPKIES-RDKPTVVALREIAAGQVGL 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|53720173|ref|YP_109159.1| DNA-directed RNA polymerase subunit omega [Burkholderia
pseudomallei K96243]
gi|53726009|ref|YP_103669.1| DNA-directed RNA polymerase subunit omega [Burkholderia mallei
ATCC 23344]
gi|67643936|ref|ZP_00442679.1| DNA-directed RNA polymerase, omega subunit [Burkholderia mallei
GB8 horse 4]
gi|76812206|ref|YP_334423.1| DNA-directed RNA polymerase subunit omega [Burkholderia
pseudomallei 1710b]
gi|121598615|ref|YP_992159.1| DNA-directed RNA polymerase subunit omega [Burkholderia mallei
SAVP1]
gi|124384391|ref|YP_001028604.1| DNA-directed RNA polymerase subunit omega [Burkholderia mallei
NCTC 10229]
gi|126439111|ref|YP_001059963.1| DNA-directed RNA polymerase subunit omega [Burkholderia
pseudomallei 668]
gi|126449028|ref|YP_001081497.1| DNA-directed RNA polymerase subunit omega [Burkholderia mallei
NCTC 10247]
gi|126451627|ref|YP_001067255.1| DNA-directed RNA polymerase subunit omega [Burkholderia
pseudomallei 1106a]
gi|134280088|ref|ZP_01766799.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
pseudomallei 305]
gi|166998291|ref|ZP_02264151.1| DNA-directed RNA polymerase, omega subunit [Burkholderia mallei
PRL-20]
gi|167720740|ref|ZP_02403976.1| DNA-directed RNA polymerase subunit omega [Burkholderia
pseudomallei DM98]
gi|167739721|ref|ZP_02412495.1| DNA-directed RNA polymerase subunit omega [Burkholderia
pseudomallei 14]
gi|167816925|ref|ZP_02448605.1| DNA-directed RNA polymerase subunit omega [Burkholderia
pseudomallei 91]
gi|167825328|ref|ZP_02456799.1| DNA-directed RNA polymerase subunit omega [Burkholderia
pseudomallei 9]
gi|167846830|ref|ZP_02472338.1| DNA-directed RNA polymerase subunit omega [Burkholderia
pseudomallei B7210]
gi|167895421|ref|ZP_02482823.1| DNA-directed RNA polymerase subunit omega [Burkholderia
pseudomallei 7894]
gi|167903806|ref|ZP_02491011.1| DNA-directed RNA polymerase subunit omega [Burkholderia
pseudomallei NCTC 13177]
gi|167912072|ref|ZP_02499163.1| DNA-directed RNA polymerase subunit omega [Burkholderia
pseudomallei 112]
gi|167920046|ref|ZP_02507137.1| DNA-directed RNA polymerase subunit omega [Burkholderia
pseudomallei BCC215]
gi|217420750|ref|ZP_03452255.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
pseudomallei 576]
gi|226193904|ref|ZP_03789506.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
pseudomallei Pakistan 9]
gi|237813379|ref|YP_002897830.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
pseudomallei MSHR346]
gi|242314702|ref|ZP_04813718.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
pseudomallei 1106b]
gi|254175470|ref|ZP_04882130.1| DNA-directed RNA polymerase, omega subunit [Burkholderia mallei
ATCC 10399]
gi|254181031|ref|ZP_04887629.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
pseudomallei 1655]
gi|254191877|ref|ZP_04898380.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
pseudomallei Pasteur 52237]
gi|254196003|ref|ZP_04902428.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
pseudomallei S13]
gi|254202367|ref|ZP_04908730.1| DNA-directed RNA polymerase, omega subunit [Burkholderia mallei
FMH]
gi|254207701|ref|ZP_04914051.1| DNA-directed RNA polymerase, omega subunit [Burkholderia mallei
JHU]
gi|254260386|ref|ZP_04951440.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
pseudomallei 1710a]
gi|254298849|ref|ZP_04966299.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
pseudomallei 406e]
gi|254356399|ref|ZP_04972675.1| DNA-directed RNA polymerase, omega subunit [Burkholderia mallei
2002721280]
gi|81604494|sp|Q62I01|RPOZ_BURMA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|81607769|sp|Q63RV8|RPOZ_BURPS RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|115305576|sp|Q3JPT0|RPOZ_BURP1 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166229353|sp|A3MML1|RPOZ_BURM7 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166229354|sp|A2S9I5|RPOZ_BURM9 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166229355|sp|A1V1Q6|RPOZ_BURMS RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166229409|sp|A3NY34|RPOZ_BURP0 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166229410|sp|A3NC92|RPOZ_BURP6 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|52210587|emb|CAH36570.1| DNA-directed RNA polymerase omega chain [Burkholderia
pseudomallei K96243]
gi|52429432|gb|AAU50025.1| DNA-directed RNA polymerase, omega subunit [Burkholderia mallei
ATCC 23344]
gi|76581659|gb|ABA51134.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
pseudomallei 1710b]
gi|121227425|gb|ABM49943.1| DNA-directed RNA polymerase, omega subunit [Burkholderia mallei
SAVP1]
gi|124292411|gb|ABN01680.1| DNA-directed RNA polymerase, omega subunit [Burkholderia mallei
NCTC 10229]
gi|126218604|gb|ABN82110.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
pseudomallei 668]
gi|126225269|gb|ABN88809.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
pseudomallei 1106a]
gi|126241898|gb|ABO04991.1| DNA-directed RNA polymerase, omega subunit [Burkholderia mallei
NCTC 10247]
gi|134248095|gb|EBA48178.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
pseudomallei 305]
gi|147746614|gb|EDK53691.1| DNA-directed RNA polymerase, omega subunit [Burkholderia mallei
FMH]
gi|147751595|gb|EDK58662.1| DNA-directed RNA polymerase, omega subunit [Burkholderia mallei
JHU]
gi|148025396|gb|EDK83550.1| DNA-directed RNA polymerase, omega subunit [Burkholderia mallei
2002721280]
gi|157808844|gb|EDO86014.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
pseudomallei 406e]
gi|157939548|gb|EDO95218.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
pseudomallei Pasteur 52237]
gi|160696514|gb|EDP86484.1| DNA-directed RNA polymerase, omega subunit [Burkholderia mallei
ATCC 10399]
gi|169652747|gb|EDS85440.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
pseudomallei S13]
gi|184211570|gb|EDU08613.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
pseudomallei 1655]
gi|217396162|gb|EEC36179.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
pseudomallei 576]
gi|225934209|gb|EEH30194.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
pseudomallei Pakistan 9]
gi|237503467|gb|ACQ95785.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
pseudomallei MSHR346]
gi|238525405|gb|EEP88833.1| DNA-directed RNA polymerase, omega subunit [Burkholderia mallei
GB8 horse 4]
gi|242137941|gb|EES24343.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
pseudomallei 1106b]
gi|243065366|gb|EES47552.1| DNA-directed RNA polymerase, omega subunit [Burkholderia mallei
PRL-20]
gi|254219075|gb|EET08459.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
pseudomallei 1710a]
Length = 67
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ ++ NRF L L A++R R L+QG P ++ +DK TVVALREIA+G +
Sbjct: 1 MARITVEDCLKQIPNRFELALAATYRARQLAQGHTPKIES-RDKPTVVALREIAAGQVGV 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|115350914|ref|YP_772753.1| DNA-directed RNA polymerase subunit omega [Burkholderia ambifaria
AMMD]
gi|170698515|ref|ZP_02889586.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
ambifaria IOP40-10]
gi|122323777|sp|Q0BHF4|RPOZ_BURCM RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|115280902|gb|ABI86419.1| DNA-directed RNA polymerase subunit omega [Burkholderia ambifaria
AMMD]
gi|170136599|gb|EDT04856.1| DNA-directed RNA polymerase, omega subunit [Burkholderia
ambifaria IOP40-10]
Length = 67
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ ++ NRF L L A++R R L+QG P ++ +DK TVVALREIASG +
Sbjct: 1 MARITVEDCLKQIPNRFELALAATYRARQLAQGHTPKIES-RDKPTVVALREIASGLVGV 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|77164719|ref|YP_343244.1| RNA polymerase, omega subunit [Nitrosococcus oceani ATCC 19707]
gi|254433378|ref|ZP_05046886.1| DNA-directed RNA polymerase, omega subunit [Nitrosococcus oceani
AFC27]
gi|115305590|sp|Q3JBT2|RPOZ_NITOC RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|76883033|gb|ABA57714.1| DNA-directed RNA polymerase subunit omega [Nitrosococcus oceani
ATCC 19707]
gi|207089711|gb|EDZ66982.1| DNA-directed RNA polymerase, omega subunit [Nitrosococcus oceani
AFC27]
Length = 86
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/76 (53%), Positives = 48/76 (63%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCID +DNRFLLVL A+ R R L+ GA PTV KDK TVVALREIA G +
Sbjct: 1 MARLTVEDCIDNIDNRFLLVLAAAKRARQLAMGATPTVPWDKDKPTVVALREIAEGHIDV 60
Query: 61 DDLEEDFIHSLQKHVE 76
++ K +
Sbjct: 61 GVMDTASAREHAKESQ 76
>gi|119900241|ref|YP_935454.1| DNA-directed RNA polymerase subunit omega [Azoarcus sp. BH72]
gi|166229344|sp|A1KCL2|RPOZ_AZOSB RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|119672654|emb|CAL96568.1| DNA-directed RNA polymerase [Azoarcus sp. BH72]
Length = 71
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVD---VGKDKNTVVALREIASGT 57
MAR TVEDC+ ++ NRF L L A++R R L+ G P ++ KDK TV+ALRE+A+G
Sbjct: 1 MARITVEDCLKRIPNRFQLTLAATYRARQLTAGGTPQIELDPHDKDKPTVIALREVAAGK 60
Query: 58 LSPDDL 63
+ + L
Sbjct: 61 VGLEML 66
>gi|148265189|ref|YP_001231895.1| DNA-directed RNA polymerase, omega subunit [Geobacter
uraniireducens Rf4]
gi|189043984|sp|A5G6A4|RPOZ_GEOUR RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|146398689|gb|ABQ27322.1| DNA-directed RNA polymerase subunit omega [Geobacter
uraniireducens Rf4]
Length = 69
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/63 (58%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLS 59
MAR TVEDC++KVDNRFLLV+LAS R + L +GAKP +D +KN V+ALREIA+G ++
Sbjct: 1 MARVTVEDCLEKVDNRFLLVMLASKRVKQLFKGAKPLIDNRAGNKNVVLALREIAAGKVN 60
Query: 60 PDD 62
+
Sbjct: 61 FEI 63
>gi|332527998|ref|ZP_08404032.1| DNA-directed RNA polymerase subunit omega [Rubrivivax
benzoatilyticus JA2]
gi|332112572|gb|EGJ12365.1| DNA-directed RNA polymerase subunit omega [Rubrivivax
benzoatilyticus JA2]
Length = 67
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ K+ NRF LVL A++R R LSQG P ++ K V ALREIA+G +
Sbjct: 1 MARITVEDCLHKIPNRFQLVLAATYRARMLSQGHAPKIETKN-KPGVTALREIAAGEVGL 59
Query: 61 DDLEE 65
+ L +
Sbjct: 60 EMLRK 64
>gi|254293929|ref|YP_003059952.1| DNA-directed RNA polymerase subunit omega [Hirschia baltica ATCC
49814]
gi|254042460|gb|ACT59255.1| DNA-directed RNA polymerase, omega subunit [Hirschia baltica ATCC
49814]
Length = 116
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/121 (36%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCI+KV NRF LVLLA HR R + G++ TVD DK+ VV+LREIA +
Sbjct: 1 MARVTVEDCIEKVPNRFQLVLLAGHRARMIRAGSEMTVDRDDDKDPVVSLREIAGDGVDL 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNIVTPDKR 120
D ++E ++ LQ+ +E + + SE D++ + +
Sbjct: 61 DLVKESYVSELQEVRPNEEAEKEEDRLALQAAPTR-------SEEDVIRAYQAELENARE 113
Query: 121 D 121
D
Sbjct: 114 D 114
>gi|209519143|ref|ZP_03267948.1| DNA-directed RNA polymerase, omega subunit [Burkholderia sp.
H160]
gi|295677341|ref|YP_003605865.1| DNA-directed RNA polymerase, omega subunit [Burkholderia sp.
CCGE1002]
gi|209500443|gb|EEA00494.1| DNA-directed RNA polymerase, omega subunit [Burkholderia sp.
H160]
gi|295437184|gb|ADG16354.1| DNA-directed RNA polymerase, omega subunit [Burkholderia sp.
CCGE1002]
Length = 67
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ ++ NRF L L A++R R L+QG P ++ +DK TV+ALREIASG +
Sbjct: 1 MARITVEDCLKQIPNRFELALAATYRARQLAQGHTPKIES-RDKPTVLALREIASGQVGV 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|86160008|ref|YP_466793.1| DNA-directed RNA polymerase subunit omega [Anaeromyxobacter
dehalogenans 2CP-C]
gi|197124047|ref|YP_002135998.1| DNA-directed RNA polymerase subunit omega [Anaeromyxobacter sp.
K]
gi|220918819|ref|YP_002494123.1| DNA-directed RNA polymerase, omega subunit [Anaeromyxobacter
dehalogenans 2CP-1]
gi|115305571|sp|Q2IFJ5|RPOZ_ANADE RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226699540|sp|B4UD71|RPOZ_ANASK RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|254809286|sp|B8J6T5|RPOZ_ANAD2 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|85776519|gb|ABC83356.1| DNA-directed RNA polymerase subunit omega [Anaeromyxobacter
dehalogenans 2CP-C]
gi|196173896|gb|ACG74869.1| DNA-directed RNA polymerase, omega subunit [Anaeromyxobacter sp.
K]
gi|219956673|gb|ACL67057.1| DNA-directed RNA polymerase, omega subunit [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 88
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 36/61 (59%), Positives = 43/61 (70%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ VDNRF LVLLA+ RTR L GA+P K+K V+ALREIA+G +
Sbjct: 1 MARVTVEDCLPMVDNRFALVLLATKRTRQLMAGARPLQAASKNKPPVLALREIATGKVRF 60
Query: 61 D 61
D
Sbjct: 61 D 61
>gi|197119580|ref|YP_002140007.1| DNA-directed RNA polymerase subunit omega [Geobacter bemidjiensis
Bem]
gi|226703138|sp|B5E9N7|RPOZ_GEOBB RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|197088940|gb|ACH40211.1| DNA-directed RNA polymerase, omega subunit [Geobacter
bemidjiensis Bem]
Length = 68
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 36/63 (57%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK-DKNTVVALREIASGTLS 59
MAR TVEDC++KVDNRFLLV+LAS R + L +GA+P +D +KN VV+LREIA+G +
Sbjct: 1 MARVTVEDCLEKVDNRFLLVMLASKRVKQLFKGARPLIDNRGANKNVVVSLREIAAGKIG 60
Query: 60 PDD 62
+
Sbjct: 61 CEI 63
>gi|88811935|ref|ZP_01127188.1| RNA polymerase omega subunit [Nitrococcus mobilis Nb-231]
gi|88790819|gb|EAR21933.1| RNA polymerase omega subunit [Nitrococcus mobilis Nb-231]
Length = 85
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 36/66 (54%), Positives = 47/66 (71%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++ V NRF LVL+A+ R R +++GA+P VD DK TVVALREIA ++
Sbjct: 1 MARVTVEDCLEHVGNRFELVLVATRRARQIARGAQPYVDWENDKPTVVALREIAERYVTA 60
Query: 61 DDLEED 66
+ L D
Sbjct: 61 EILRAD 66
>gi|71733656|ref|YP_272503.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71554209|gb|AAZ33420.1| DNA-directed RNA polymerase omega chain (RNAP omegasubunit)
(Transcriptase omega chain) (RNA polymerase omega
subunit) [Pseudomonas syringae pv. phaseolicola 1448A]
Length = 113
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ VDNRF LV+L++ R R L+ G +P + DK TV+ALREIA+G +
Sbjct: 27 MARVTVEDCLEHVDNRFELVMLSTKRARQLATGGKEPKLAWENDKPTVMALREIAAGLMD 86
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPT 84
+ E I + E +S
Sbjct: 87 YAVIAEAEIVEDEPLFAAFEDESNE 111
>gi|213970697|ref|ZP_03398822.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae pv.
tomato T1]
gi|213924531|gb|EEB58101.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae pv.
tomato T1]
Length = 113
Score = 98.0 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ VDNRF LV+L++ R R L+ G +P + DK TV+ALREIA+G +
Sbjct: 27 MARVTVEDCLEHVDNRFELVMLSTKRARQLATGGKEPKLAWENDKPTVMALREIAAGLMD 86
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPT 84
+ E I + E +S
Sbjct: 87 YAVIAEAEIVEDEPLFAAFEDESNE 111
>gi|300703576|ref|YP_003745178.1| DNA-directed RNA polymerase subunit omega [Ralstonia solanacearum
CFBP2957]
gi|299066251|emb|CBJ37435.1| DNA-directed RNA polymerase subunit omega [Ralstonia solanacearum
CMR15]
gi|299071239|emb|CBJ42557.1| DNA-directed RNA polymerase subunit omega [Ralstonia solanacearum
CFBP2957]
Length = 67
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 35/65 (53%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ ++ NRF L L A++R R L QG P VD KDK TV ALREIA+G +
Sbjct: 1 MARITVEDCLKQIPNRFELALAATYRARQLVQGHTPKVD-AKDKATVTALREIAAGQVGI 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|91787230|ref|YP_548182.1| DNA-directed RNA polymerase subunit omega [Polaromonas sp. JS666]
gi|123355939|sp|Q12DV8|RPOZ_POLSJ RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|91696455|gb|ABE43284.1| DNA-directed RNA polymerase subunit omega [Polaromonas sp. JS666]
Length = 67
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++K+ NRF LVL A++R R LSQG ++ K V ALREIA G +
Sbjct: 1 MARITVEDCLEKIPNRFQLVLAATYRARMLSQGHAAKIESKN-KPGVTALREIAEGKIGL 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|78486480|ref|YP_392405.1| DNA-directed RNA polymerase, omega subunit [Thiomicrospira
crunogena XCL-2]
gi|118587625|sp|Q31DP2|RPOZ_THICR RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|78364766|gb|ABB42731.1| DNA-directed RNA polymerase, omega subunit [Thiomicrospira
crunogena XCL-2]
Length = 74
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 38/66 (57%), Positives = 51/66 (77%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+D+V+NRF LV+L+S R R LS GA+PT+D KDK TV+ALRE+A T++
Sbjct: 1 MARVTVEDCLDQVENRFELVILSSKRARQLSNGAEPTLDWDKDKPTVMALRELAENTINK 60
Query: 61 DDLEED 66
+ + D
Sbjct: 61 EVVMSD 66
>gi|121603721|ref|YP_981050.1| DNA-directed RNA polymerase subunit omega [Polaromonas
naphthalenivorans CJ2]
gi|166230341|sp|A1VKF1|RPOZ_POLNA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|120592690|gb|ABM36129.1| DNA-directed RNA polymerase subunit omega [Polaromonas
naphthalenivorans CJ2]
Length = 67
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++K+ NRF LVL A++R R LSQG ++ K V ALREIA+G +
Sbjct: 1 MARITVEDCLEKIPNRFQLVLAATYRARMLSQGHAARIESKN-KPAVTALREIAAGKVGL 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|153870973|ref|ZP_02000258.1| RNA polymerase Rpb6 [Beggiatoa sp. PS]
gi|152072564|gb|EDN69745.1| RNA polymerase Rpb6 [Beggiatoa sp. PS]
Length = 71
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 36/65 (55%), Positives = 45/65 (69%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++ DNRF LVLLAS R R L++GA V DK TVVALREI G ++
Sbjct: 1 MARLTVEDCLNHTDNRFDLVLLASKRARDLAKGAPALVPTENDKPTVVALREIEEGKITK 60
Query: 61 DDLEE 65
D+ ++
Sbjct: 61 DNFDK 65
>gi|153006549|ref|YP_001380874.1| DNA-directed RNA polymerase subunit omega [Anaeromyxobacter sp.
Fw109-5]
gi|166229343|sp|A7HGP4|RPOZ_ANADF RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|152030122|gb|ABS27890.1| DNA-directed RNA polymerase, omega subunit [Anaeromyxobacter sp.
Fw109-5]
Length = 88
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 37/61 (60%), Positives = 43/61 (70%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ VDNRF LVLLA+ RTR L GA+P K+K VVALREIA+G +
Sbjct: 1 MARVTVEDCLPLVDNRFALVLLATKRTRQLMAGARPLQGHAKNKAPVVALREIATGKVRF 60
Query: 61 D 61
D
Sbjct: 61 D 61
>gi|226939388|ref|YP_002794461.1| RpoZ [Laribacter hongkongensis HLHK9]
gi|254809246|sp|C1DC35|RPOZ_LARHH RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226714314|gb|ACO73452.1| RpoZ [Laribacter hongkongensis HLHK9]
Length = 72
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 4/73 (5%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVG---KDKNTVVALREIASGT 57
MAR TV+DC+ ++ NRF L L A++R R ++ GA+ +D KDK TVVALREIA+G
Sbjct: 1 MARITVDDCLKRIPNRFDLTLAAAYRARQIANGAQLLIDSNAGSKDKPTVVALREIAAGQ 60
Query: 58 LSPDDLEEDFIHS 70
+ + L E I S
Sbjct: 61 IGREVL-ERAIRS 72
>gi|114321590|ref|YP_743273.1| DNA-directed RNA polymerase subunit omega [Alkalilimnicola
ehrlichii MLHE-1]
gi|122310934|sp|Q0A5V4|RPOZ_ALHEH RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|114227984|gb|ABI57783.1| DNA-directed RNA polymerase subunit omega [Alkalilimnicola
ehrlichii MLHE-1]
Length = 107
Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 42/104 (40%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ +DNRF LVL+ S R R L+ GA+ VD DK TVVALREIA G +
Sbjct: 1 MARVTVEDCLTNMDNRFQLVLVGSKRARQLANGAEAHVDWDNDKPTVVALREIADGHVGR 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSE 104
+ LEE L E + E + G +
Sbjct: 61 EILEEQPEPVL---DFEAEASALMEEEAAKGNADAGQGEGDAPK 101
>gi|115376720|ref|ZP_01463947.1| DNA-directed RNA polymerase, omega subunit [Stigmatella
aurantiaca DW4/3-1]
gi|310822912|ref|YP_003955270.1| DNA-directed RNA polymerase subunit omega [Stigmatella aurantiaca
DW4/3-1]
gi|115366269|gb|EAU65277.1| DNA-directed RNA polymerase, omega subunit [Stigmatella
aurantiaca DW4/3-1]
gi|309395984|gb|ADO73443.1| DNA-directed RNA polymerase subunit omega [Stigmatella aurantiaca
DW4/3-1]
Length = 91
Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 35/72 (48%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ VDNRF LVLL + R R L GA+P +++ K+K V++LREIA+G +
Sbjct: 1 MARITVEDCLPLVDNRFALVLLGAKRARQLMAGARPIIEISKNKPPVLSLREIATGRVKF 60
Query: 61 D-DLEEDFIHSL 71
D D+ E
Sbjct: 61 DRDVREALSGKY 72
>gi|70733345|ref|YP_263120.1| DNA-directed RNA polymerase subunit omega [Pseudomonas fluorescens
Pf-5]
gi|68347644|gb|AAY95250.1| DNA-directed RNA polymerase, omega subunit [Pseudomonas fluorescens
Pf-5]
Length = 106
Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 38/85 (44%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ VDNRF LV+L++ R R L+ G +P V DK TVVALREIA G +
Sbjct: 20 MARVTVEDCLEHVDNRFELVMLSTKRARQLATGGKEPKVAWENDKPTVVALREIAEGLID 79
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPT 84
+ E I + E +S
Sbjct: 80 YAAIAEAEIVEDEPLFAAFEDESNE 104
>gi|302877632|ref|YP_003846196.1| DNA-directed RNA polymerase, omega subunit [Gallionella
capsiferriformans ES-2]
gi|302580421|gb|ADL54432.1| DNA-directed RNA polymerase, omega subunit [Gallionella
capsiferriformans ES-2]
Length = 68
Score = 96.9 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVE+C+ + NRF + L A+ R R ++ GA V +DK TVVALREI+ G +
Sbjct: 1 MARITVEECLAHIPNRFEMTLAAAFRARQIANGASHLVPESRDKPTVVALREISKGKVGV 60
Query: 61 DDL 63
+ L
Sbjct: 61 EIL 63
>gi|90415474|ref|ZP_01223408.1| RNA polymerase, omega subunit [marine gamma proteobacterium
HTCC2207]
gi|90332797|gb|EAS47967.1| RNA polymerase, omega subunit [marine gamma proteobacterium
HTCC2207]
Length = 157
Score = 96.9 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 5/89 (5%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKP-TVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+D VDNRF LV++ S R R ++ G +P V DK TV+ALREI +G ++
Sbjct: 16 MARITVEDCLDHVDNRFELVMVGSKRARQIATGGRPALVPEENDKPTVIALREIEAGLVT 75
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSD 88
D L E Q + +D + P + D
Sbjct: 76 ADILTE----KPQDYEIVDASEEPELDDD 100
>gi|258541740|ref|YP_003187173.1| DNA-directed RNA polymerase subunit omega [Acetobacter pasteurianus
IFO 3283-01]
gi|329114474|ref|ZP_08243236.1| DNA-directed RNA polymerase subunit omega [Acetobacter pomorum
DM001]
gi|256632818|dbj|BAH98793.1| DNA-directed RNA polymerase omega subunit [Acetobacter pasteurianus
IFO 3283-01]
gi|256635875|dbj|BAI01844.1| DNA-directed RNA polymerase omega subunit [Acetobacter pasteurianus
IFO 3283-03]
gi|256638930|dbj|BAI04892.1| DNA-directed RNA polymerase omega subunit [Acetobacter pasteurianus
IFO 3283-07]
gi|256641984|dbj|BAI07939.1| DNA-directed RNA polymerase omega subunit [Acetobacter pasteurianus
IFO 3283-22]
gi|256645039|dbj|BAI10987.1| DNA-directed RNA polymerase omega subunit [Acetobacter pasteurianus
IFO 3283-26]
gi|256648094|dbj|BAI14035.1| DNA-directed RNA polymerase omega subunit [Acetobacter pasteurianus
IFO 3283-32]
gi|256651147|dbj|BAI17081.1| DNA-directed RNA polymerase omega subunit [Acetobacter pasteurianus
IFO 3283-01-42C]
gi|256654138|dbj|BAI20065.1| DNA-directed RNA polymerase omega subunit [Acetobacter pasteurianus
IFO 3283-12]
gi|326696550|gb|EGE48229.1| DNA-directed RNA polymerase subunit omega [Acetobacter pomorum
DM001]
Length = 123
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++KV NRF LV+ A+ R R++S+G + TVD DKN VVALREIA T+S
Sbjct: 1 MARVTVEDCVEKVPNRFELVVYAAQRARNISRGEELTVDRDNDKNPVVALREIADETVSL 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEG--DLLEGINNIV 115
L D I S + E + + ++ + L E D + I +
Sbjct: 61 PALRNDLIRSQAREPEPEPVEEEVQDLVPTEQNIFGLQEVSAEEEAADDVRAIEAAL 117
>gi|255022102|ref|ZP_05294106.1| DNA-directed RNA polymerase omega subunit [Acidithiobacillus
caldus ATCC 51756]
gi|254968460|gb|EET26018.1| DNA-directed RNA polymerase omega subunit [Acidithiobacillus
caldus ATCC 51756]
Length = 91
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/66 (59%), Positives = 48/66 (72%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ +DNRF L L+A+ R R L+ GA P V+VG+DKNTVVALREIA G +
Sbjct: 1 MARITVEDCLANLDNRFELTLVAARRARQLAGGATPYVEVGRDKNTVVALREIAEGLVGR 60
Query: 61 DDLEED 66
L+E
Sbjct: 61 SILDEQ 66
>gi|253699681|ref|YP_003020870.1| DNA-directed RNA polymerase subunit omega [Geobacter sp. M21]
gi|259494499|sp|C6E2G6|RPOZ_GEOSM RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|251774531|gb|ACT17112.1| DNA-directed RNA polymerase, omega subunit [Geobacter sp. M21]
Length = 68
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/63 (55%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK-DKNTVVALREIASGTLS 59
MAR TVEDC++KVDNRFLLV+L+S R + L +GA+P +D +KN VV+LREIA+G +
Sbjct: 1 MARVTVEDCLEKVDNRFLLVMLSSKRVKQLFKGARPLIDNRGANKNVVVSLREIAAGKIG 60
Query: 60 PDD 62
+
Sbjct: 61 CEI 63
>gi|322420744|ref|YP_004199967.1| DNA-directed RNA polymerase subunit omega [Geobacter sp. M18]
gi|320127131|gb|ADW14691.1| DNA-directed RNA polymerase, omega subunit [Geobacter sp. M18]
Length = 68
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 37/63 (58%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLS 59
MAR TVEDC++KVDNRFLLV+LAS R + L +GAKP +D +KN VV+LREIA+G +
Sbjct: 1 MARVTVEDCLEKVDNRFLLVMLASKRVKQLFKGAKPLIDNRAANKNVVVSLREIAAGKIG 60
Query: 60 PDD 62
+
Sbjct: 61 CEI 63
>gi|160872558|ref|ZP_02062690.1| DNA-directed RNA polymerase, omega subunit [Rickettsiella grylli]
gi|159121357|gb|EDP46695.1| DNA-directed RNA polymerase, omega subunit [Rickettsiella grylli]
Length = 78
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/74 (48%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLS- 59
MAR TVEDC+ KV N F LV++AS R R +++G V+ DK TV+ALREIASG L+
Sbjct: 1 MARVTVEDCLKKVKNHFQLVIIASKRARQIAKGGMAMVNPENDKPTVIALREIASGRLND 60
Query: 60 -PDDLEEDFIHSLQ 72
+ ++E I Q
Sbjct: 61 AEEQIQEGNIGGSQ 74
>gi|56477407|ref|YP_158996.1| DNA-directed RNA polymerase subunit omega [Aromatoleum aromaticum
EbN1]
gi|81598773|sp|Q5P3L9|RPOZ_AZOSE RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|56313450|emb|CAI08095.1| DNA-directed RNA polymerase omega chain [Aromatoleum aromaticum
EbN1]
Length = 71
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVD---VGKDKNTVVALREIASGT 57
MAR T+EDC+ ++ NRF L L A++R R ++ G+ P V+ KDK TV+ALREIA+G
Sbjct: 1 MARITIEDCLKRIPNRFQLTLAATYRARQITIGSTPQVELEKSDKDKPTVIALREIAAGK 60
Query: 58 LSPDDL 63
+ + L
Sbjct: 61 VGLEVL 66
>gi|78223529|ref|YP_385276.1| RNA polymerase, omega subunit [Geobacter metallireducens GS-15]
gi|115305584|sp|Q39T73|RPOZ_GEOMG RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|78194784|gb|ABB32551.1| DNA-directed RNA polymerase subunit omega [Geobacter
metallireducens GS-15]
Length = 69
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 37/62 (59%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVG-KDKNTVVALREIASGTLS 59
MAR TVEDC++KVDNRFLLV+LAS R + L +GA P +D +KN VV+LREIASG +
Sbjct: 1 MARVTVEDCLEKVDNRFLLVMLASKRVKQLYKGASPLIDNKAANKNVVVSLREIASGKVG 60
Query: 60 PD 61
+
Sbjct: 61 YE 62
>gi|237746824|ref|ZP_04577304.1| DNA-directed RNA polymerase subunit omega [Oxalobacter formigenes
HOxBLS]
gi|229378175|gb|EEO28266.1| DNA-directed RNA polymerase subunit omega [Oxalobacter formigenes
HOxBLS]
Length = 67
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR T+EDC+ ++ NRF L L A++R R L QG P V+ KDK TV+ALREIA+G +
Sbjct: 1 MARITIEDCLKEIPNRFELTLCATYRARQLLQGHTPKVE-AKDKMTVMALREIAAGKVGR 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|118594145|ref|ZP_01551492.1| DNA-directed RNA polymerase, omega subunit [Methylophilales
bacterium HTCC2181]
gi|118439923|gb|EAV46550.1| DNA-directed RNA polymerase, omega subunit [Methylophilales
bacterium HTCC2181]
Length = 70
Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVG--KDKNTVVALREIASGTL 58
MAR T++DC++++ NRF L L+AS R R +S GA+P +DV DK +V+ALREIA+G +
Sbjct: 1 MARITIDDCLEQIPNRFQLTLVASLRCRQISNGAEPLIDVEGSNDKPSVIALREIAAGLI 60
Query: 59 SPDDLEEDF 67
D L ++
Sbjct: 61 GEDILIKNI 69
>gi|237654664|ref|YP_002890978.1| DNA-directed RNA polymerase subunit omega [Thauera sp. MZ1T]
gi|237625911|gb|ACR02601.1| DNA-directed RNA polymerase, omega subunit [Thauera sp. MZ1T]
Length = 71
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/66 (48%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV---GKDKNTVVALREIASGT 57
MAR TVEDC+ ++ NRF L L A++R R L+ G P +DV +DK TV+ALREI +G
Sbjct: 1 MARITVEDCLKRIPNRFQLTLAATYRARQLTAGGTPQIDVDPLDRDKPTVIALREIEAGK 60
Query: 58 LSPDDL 63
+ + L
Sbjct: 61 VGLEML 66
>gi|225025658|ref|ZP_03714850.1| hypothetical protein EIKCOROL_02560 [Eikenella corrodens ATCC
23834]
gi|224941551|gb|EEG22760.1| hypothetical protein EIKCOROL_02560 [Eikenella corrodens ATCC
23834]
Length = 68
Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV-DVGKDKNTVVALREIASGTLS 59
MAR TVEDCI ++ N F L L A++R R L+ G+ P V D+ +K TV ALREIA+G +
Sbjct: 1 MARITVEDCITRIPNHFNLTLAAAYRARQLANGSMPLVDDIRNNKPTVTALREIAAGQIG 60
Query: 60 PDDL 63
+ L
Sbjct: 61 EEIL 64
>gi|94499849|ref|ZP_01306385.1| DNA-directed RNA polymerase omega subunit [Oceanobacter sp.
RED65]
gi|94428050|gb|EAT13024.1| DNA-directed RNA polymerase omega subunit [Oceanobacter sp.
RED65]
Length = 75
Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHL-SQGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+D VDNRF LV+LA+ R R + QGA+P V DK TVVALREIA G ++
Sbjct: 1 MARVTVEDCLDNVDNRFELVMLATKRARQIVLQGAEPLVAAENDKPTVVALREIAEGKVT 60
Query: 60 PDDL 63
P +
Sbjct: 61 PATM 64
>gi|258544321|ref|ZP_05704555.1| DNA-directed RNA polymerase, omega subunit [Cardiobacterium
hominis ATCC 15826]
gi|258520401|gb|EEV89260.1| DNA-directed RNA polymerase, omega subunit [Cardiobacterium
hominis ATCC 15826]
Length = 85
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/85 (45%), Positives = 50/85 (58%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR T+EDC+ +NRF LVL AS R R ++ G +P V DK TV+ALREIA +
Sbjct: 1 MARITIEDCLKDENNRFRLVLAASKRARQIADGHQPLVLPENDKTTVIALREIAEDKTTI 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTE 85
L D I L EI++P+ TE
Sbjct: 61 SGLLNDKIPVLVVEPEIEDPEIMTE 85
>gi|74316490|ref|YP_314230.1| RNA polymerase, omega subunit [Thiobacillus denitrificans ATCC
25259]
gi|118587626|sp|Q3SLI5|RPOZ_THIDA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|74055985|gb|AAZ96425.1| RNA polymerase, omega subunit [Thiobacillus denitrificans ATCC
25259]
Length = 67
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TV+DCID + NRF L L ++R R L+QG++P V+ KDK V ALREIA+G +
Sbjct: 1 MARITVDDCIDNIPNRFELTLAVTYRARQLAQGSQPMVES-KDKPIVTALREIAAGKVGR 59
Query: 61 DDL 63
+ L
Sbjct: 60 EIL 62
>gi|163856560|ref|YP_001630858.1| DNA-directed RNA polymerase subunit omega [Bordetella petrii DSM
12804]
gi|226699548|sp|A9ILJ1|RPOZ_BORPD RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|163260288|emb|CAP42590.1| DNA-directed RNA polymerase omega chain [Bordetella petrii]
Length = 67
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 35/65 (53%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+++V NRF L L A++R R L+QG P +D KDK TV ALREIA G
Sbjct: 1 MARITVEDCLNQVPNRFKLTLAATYRARELAQGHAPRIDS-KDKPTVTALREIAGGHTGL 59
Query: 61 DDLEE 65
+ L +
Sbjct: 60 EMLRK 64
>gi|254281964|ref|ZP_04956932.1| DNA-directed RNA polymerase, omega subunit [gamma proteobacterium
NOR51-B]
gi|219678167|gb|EED34516.1| DNA-directed RNA polymerase, omega subunit [gamma proteobacterium
NOR51-B]
Length = 85
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+D VDNRF LV+LAS R R L+ G P V+ DK TV+ALREIA G ++
Sbjct: 1 MARVTVEDCLDNVDNRFELVMLASKRARQLATGGKDPMVEEESDKPTVIALREIAEGMVT 60
Query: 60 PDDL 63
PD L
Sbjct: 61 PDLL 64
>gi|332284245|ref|YP_004416156.1| DNA-directed RNA polymerase subunit omega [Pusillimonas sp. T7-7]
gi|330428198|gb|AEC19532.1| DNA-directed RNA polymerase subunit omega [Pusillimonas sp. T7-7]
Length = 67
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ + NRF L L A++R R L+QG +P +D K TV ALREIA+G
Sbjct: 1 MARITVEDCLGHIPNRFNLTLAATYRARELAQGHEPRLDSKN-KPTVTALREIAAGVTGL 59
Query: 61 DDLEE 65
+ L +
Sbjct: 60 EMLRK 64
>gi|119503535|ref|ZP_01625618.1| DNA-directed RNA polymerase, omega subunit [marine gamma
proteobacterium HTCC2080]
gi|119460597|gb|EAW41689.1| DNA-directed RNA polymerase, omega subunit [marine gamma
proteobacterium HTCC2080]
Length = 85
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/64 (59%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+D VDNRF LV+LAS R R ++ QG P VD DK TV+ALREIA G ++
Sbjct: 1 MARITVEDCLDNVDNRFELVMLASKRARQIATQGKDPLVDEESDKPTVIALREIAEGKVT 60
Query: 60 PDDL 63
P+ +
Sbjct: 61 PELI 64
>gi|303256860|ref|ZP_07342874.1| DNA-directed RNA polymerase, omega subunit [Burkholderiales
bacterium 1_1_47]
gi|330998893|ref|ZP_08322620.1| DNA-directed RNA polymerase, omega subunit [Parasutterella
excrementihominis YIT 11859]
gi|302860351|gb|EFL83428.1| DNA-directed RNA polymerase, omega subunit [Burkholderiales
bacterium 1_1_47]
gi|329576107|gb|EGG57626.1| DNA-directed RNA polymerase, omega subunit [Parasutterella
excrementihominis YIT 11859]
Length = 66
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 36/63 (57%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ K+ NRF +VL+AS R R LSQG P ++ KDK TV ALREIA G
Sbjct: 1 MARITVEDCLKKIPNRFQMVLVASVRARQLSQGHTPKIEC-KDKATVAALREIAEGVTGL 59
Query: 61 DDL 63
+ L
Sbjct: 60 EML 62
>gi|222055237|ref|YP_002537599.1| DNA-directed RNA polymerase subunit omega [Geobacter sp. FRC-32]
gi|254809244|sp|B9M902|RPOZ_GEOSF RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|221564526|gb|ACM20498.1| DNA-directed RNA polymerase, omega subunit [Geobacter sp. FRC-32]
Length = 69
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/63 (58%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLS 59
MAR TVEDC++KVDNRFLLV+LAS R + L +GAKP +D +KN VV+LREIA+G ++
Sbjct: 1 MARVTVEDCLEKVDNRFLLVMLASKRVKQLFKGAKPLIDNRAANKNVVVSLREIAAGKVN 60
Query: 60 PDD 62
+
Sbjct: 61 FEI 63
>gi|88705449|ref|ZP_01103160.1| RNA polymerase Rpb6 [Congregibacter litoralis KT71]
gi|88700539|gb|EAQ97647.1| RNA polymerase Rpb6 [Congregibacter litoralis KT71]
Length = 86
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/64 (57%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ VDNRF LV++AS R R L+ G P V DK TV+ALREIA G ++
Sbjct: 1 MARVTVEDCLESVDNRFELVMVASKRARQLATGGKDPLVQEESDKPTVIALREIAEGLVT 60
Query: 60 PDDL 63
PD L
Sbjct: 61 PDML 64
>gi|83648951|ref|YP_437386.1| DNA-directed RNA polymerase subunit omega [Hahella chejuensis
KCTC 2396]
gi|115305585|sp|Q2S8R3|RPOZ_HAHCH RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|83636994|gb|ABC32961.1| DNA-directed RNA polymerase, omega subunit [Hahella chejuensis
KCTC 2396]
Length = 69
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 41/67 (61%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQ-GAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+D VDNRF LV+LAS R R +SQ G P V+ DK TVVALREIA+G ++
Sbjct: 1 MARVTVEDCLDHVDNRFELVMLASKRARQISQYGKDPKVEWENDKPTVVALREIAAGLIT 60
Query: 60 PDDLEED 66
+ LE+D
Sbjct: 61 SEMLEQD 67
>gi|254515850|ref|ZP_05127910.1| DNA-directed RNA polymerase, omega subunit [gamma proteobacterium
NOR5-3]
gi|219675572|gb|EED31938.1| DNA-directed RNA polymerase, omega subunit [gamma proteobacterium
NOR5-3]
Length = 86
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ VDNRF LV++AS R R L+ G +P V DK TV+ALREIA G ++
Sbjct: 1 MARVTVEDCLESVDNRFELVMIASKRARQLATGGKEPLVQEESDKPTVIALREIAEGLVT 60
Query: 60 PDDL 63
PD L
Sbjct: 61 PDML 64
>gi|54294907|ref|YP_127322.1| RNA polymerase omega subunit [Legionella pneumophila str. Lens]
gi|54297936|ref|YP_124305.1| RNA polymerase omega subunit [Legionella pneumophila str. Paris]
gi|148359581|ref|YP_001250788.1| RNA polymerase omega subunit [Legionella pneumophila str. Corby]
gi|296107623|ref|YP_003619324.1| hypothetical protein lpa_02928 [Legionella pneumophila 2300/99
Alcoy]
gi|81601276|sp|Q5WV31|RPOZ_LEGPL RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|81601757|sp|Q5X3P3|RPOZ_LEGPA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166230327|sp|A5IDJ2|RPOZ_LEGPC RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|53751721|emb|CAH13143.1| RNA polymerase omega subunit [Legionella pneumophila str. Paris]
gi|53754739|emb|CAH16226.1| RNA polymerase omega subunit [Legionella pneumophila str. Lens]
gi|148281354|gb|ABQ55442.1| RNA polymerase omega subunit [Legionella pneumophila str. Corby]
gi|295649525|gb|ADG25372.1| hypothetical protein lpa_02928 [Legionella pneumophila 2300/99
Alcoy]
gi|307610734|emb|CBX00341.1| RNA polymerase omega subunit [Legionella pneumophila 130b]
Length = 67
Score = 94.2 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 36/67 (53%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ V NRF LV++A+ R R ++ +G +P V+ DK TVVALREIA G ++
Sbjct: 1 MARVTVEDCLEHVKNRFELVMVATKRARQIAVRGDQPMVEWENDKPTVVALREIAEGYVT 60
Query: 60 PDDLEED 66
D L+ED
Sbjct: 61 ADILDED 67
>gi|296137093|ref|YP_003644335.1| DNA-directed RNA polymerase, omega subunit [Thiomonas intermedia
K12]
gi|294341375|emb|CAZ89792.1| putative DNA-directed RNA polymerase omega chain (RNAP omega
subunit) (Transcriptase omega chain) (RNA polymerase
omega subunit) [Thiomonas sp. 3As]
gi|295797215|gb|ADG32005.1| DNA-directed RNA polymerase, omega subunit [Thiomonas intermedia
K12]
Length = 67
Score = 94.2 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++K+ NRF LVL A++R R L QG P ++ KDK V ALREIA+G
Sbjct: 1 MARITVEDCLEKIPNRFQLVLAATYRARMLEQGHSPKLES-KDKPAVTALREIAAGLTGI 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|254497619|ref|ZP_05110404.1| RNA polymerase omega subunit [Legionella drancourtii LLAP12]
gi|254353168|gb|EET11918.1| RNA polymerase omega subunit [Legionella drancourtii LLAP12]
Length = 67
Score = 94.2 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 34/67 (50%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ V NRF LV++A+ R R ++ +G +P V+ DK TVVALREIA G ++
Sbjct: 1 MARVTVEDCLEHVANRFELVMVATKRARQIAVRGDQPMVEWENDKPTVVALREIAEGLVT 60
Query: 60 PDDLEED 66
D L ++
Sbjct: 61 ADILNKE 67
>gi|304309937|ref|YP_003809535.1| DNA-directed RNA polymerase omega chain [gamma proteobacterium
HdN1]
gi|301795670|emb|CBL43869.1| DNA-directed RNA polymerase omega chain [gamma proteobacterium
HdN1]
Length = 80
Score = 94.2 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+ ++ NRF LVL+++ R R L+ G +P V DK TVVALREIA +
Sbjct: 1 MARITVEDCLQQIPNRFELVLVSAKRARQLATGGKEPFVPWENDKPTVVALREIAKQYVG 60
Query: 60 PDDLEED 66
L+
Sbjct: 61 MSILDNA 67
>gi|296112578|ref|YP_003626516.1| DNA-directed RNA polymerase omega subunit [Moraxella catarrhalis
RH4]
gi|295920272|gb|ADG60623.1| DNA-directed RNA polymerase omega subunit [Moraxella catarrhalis
RH4]
gi|326560163|gb|EGE10552.1| DNA-directed RNA polymerase subunit omega [Moraxella catarrhalis
103P14B1]
gi|326561342|gb|EGE11700.1| DNA-directed RNA polymerase subunit omega [Moraxella catarrhalis
7169]
gi|326564250|gb|EGE14484.1| DNA-directed RNA polymerase subunit omega [Moraxella catarrhalis
46P47B1]
gi|326566201|gb|EGE16354.1| DNA-directed RNA polymerase subunit omega [Moraxella catarrhalis
12P80B1]
gi|326569740|gb|EGE19790.1| DNA-directed RNA polymerase subunit omega [Moraxella catarrhalis
BC8]
gi|326570771|gb|EGE20796.1| DNA-directed RNA polymerase subunit omega [Moraxella catarrhalis
BC1]
gi|326571654|gb|EGE21669.1| DNA-directed RNA polymerase subunit omega [Moraxella catarrhalis
BC7]
gi|326573034|gb|EGE23010.1| DNA-directed RNA polymerase subunit omega [Moraxella catarrhalis
CO72]
gi|326573556|gb|EGE23519.1| DNA-directed RNA polymerase subunit omega [Moraxella catarrhalis
101P30B1]
gi|326577701|gb|EGE27577.1| DNA-directed RNA polymerase subunit omega [Moraxella catarrhalis
O35E]
Length = 90
Score = 94.2 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 37/66 (56%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR T+EDC++ VDNRF L+L+AS R R L+ G +PTV V DK TV+ALREI++G +S
Sbjct: 1 MARVTIEDCLENVDNRFELILVASKRARQLANGKVEPTVAVDNDKPTVLALREISAGHVS 60
Query: 60 PDDLEE 65
L+E
Sbjct: 61 RAILDE 66
>gi|53803688|ref|YP_114454.1| DNA-directed RNA polymerase, omega subunit [Methylococcus
capsulatus str. Bath]
gi|81681644|sp|Q606J4|RPOZ_METCA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|53757449|gb|AAU91740.1| DNA-directed RNA polymerase, omega subunit [Methylococcus
capsulatus str. Bath]
Length = 93
Score = 94.2 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 38/66 (57%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQG-AKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+DKV+NRF LVLLAS R R L++ + V DK TVVALREIA G ++
Sbjct: 1 MARITVEDCLDKVENRFQLVLLASKRARVLARHPEEAKVTWDNDKPTVVALREIAEGHIT 60
Query: 60 PDDLEE 65
P ++E
Sbjct: 61 PAYMKE 66
>gi|254427705|ref|ZP_05041412.1| DNA-directed RNA polymerase, omega subunit [Alcanivorax sp.
DG881]
gi|196193874|gb|EDX88833.1| DNA-directed RNA polymerase, omega subunit [Alcanivorax sp.
DG881]
Length = 87
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++K+DNRF LVL+A R L G +P V DK TVVALREIA G ++
Sbjct: 1 MARVTVEDCLEKLDNRFELVLVAGKRAHQLQSGGKEPRVAWENDKPTVVALREIAEGHVT 60
Query: 60 PDDLEE 65
+ ++
Sbjct: 61 AESVDN 66
>gi|293605646|ref|ZP_06688026.1| potassium-transporting ATPase subunit B [Achromobacter piechaudii
ATCC 43553]
gi|311106547|ref|YP_003979400.1| DNA-directed RNA polymerase subunit omega [Achromobacter
xylosoxidans A8]
gi|292816026|gb|EFF75127.1| potassium-transporting ATPase subunit B [Achromobacter piechaudii
ATCC 43553]
gi|310761236|gb|ADP16685.1| DNA-directed RNA polymerase, omega subunit [Achromobacter
xylosoxidans A8]
gi|317402994|gb|EFV83532.1| DNA-directed RNA polymerase subunit omega [Achromobacter
xylosoxidans C54]
Length = 67
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++++ NRF L L A++R R L+QG P +D KDK TV ALREIA G
Sbjct: 1 MARITVEDCLNQIPNRFKLTLAATYRARELAQGHAPRLDS-KDKPTVTALREIAGGLTGV 59
Query: 61 DDLEE 65
+ L +
Sbjct: 60 EMLRK 64
>gi|146329466|ref|YP_001209909.1| DNA-directed RNA polymerase, omega subunit [Dichelobacter nodosus
VCS1703A]
gi|166230314|sp|A5EXW8|RPOZ_DICNV RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|146232936|gb|ABQ13914.1| DNA-directed RNA polymerase, omega subunit [Dichelobacter nodosus
VCS1703A]
Length = 77
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 41/65 (63%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ ++RF LVL AS R R L+ G +P V DK TV+ALREI G ++
Sbjct: 1 MARVTVEDCLIHENSRFRLVLAASKRARQLTLGHQPLVAPENDKPTVLALREIEEGKVTV 60
Query: 61 DDLEE 65
L +
Sbjct: 61 QGLLD 65
>gi|288942675|ref|YP_003444915.1| DNA-directed RNA polymerase subunit omega [Allochromatium vinosum
DSM 180]
gi|288898047|gb|ADC63883.1| DNA-directed RNA polymerase, omega subunit [Allochromatium
vinosum DSM 180]
Length = 104
Score = 93.8 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 35/66 (53%), Positives = 46/66 (69%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ VDNRF LVLLA+ R R L+ G +P + DK TV+ALREIA+G ++
Sbjct: 1 MARITVEDCLAHVDNRFDLVLLATKRARQLANGVEPLLAPENDKPTVLALREIAAGKITN 60
Query: 61 DDLEED 66
++E
Sbjct: 61 AMIQEA 66
>gi|270157354|ref|ZP_06186011.1| DNA-directed RNA polymerase omega subunit [Legionella longbeachae
D-4968]
gi|289164253|ref|YP_003454391.1| RNA polymerase omega subunit [Legionella longbeachae NSW150]
gi|269989379|gb|EEZ95633.1| DNA-directed RNA polymerase omega subunit [Legionella longbeachae
D-4968]
gi|288857426|emb|CBJ11254.1| RNA polymerase omega subunit [Legionella longbeachae NSW150]
Length = 67
Score = 93.8 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 34/67 (50%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ V NRF LV++A+ R R ++ +G +P V+ DK TVVALREIA G ++
Sbjct: 1 MARVTVEDCLEHVANRFELVMVATKRARQIAVRGDQPMVEWENDKPTVVALREIAEGLIT 60
Query: 60 PDDLEED 66
P+ L+++
Sbjct: 61 PEILDKE 67
>gi|225077316|ref|ZP_03720515.1| hypothetical protein NEIFLAOT_02375 [Neisseria flavescens
NRL30031/H210]
gi|241760296|ref|ZP_04758391.1| DNA-directed RNA polymerase, omega subunit [Neisseria flavescens
SK114]
gi|261379822|ref|ZP_05984395.1| DNA-directed RNA polymerase, omega subunit [Neisseria subflava
NJ9703]
gi|319637776|ref|ZP_07992542.1| DNA-directed RNA polymerase subunit omega [Neisseria mucosa C102]
gi|224951363|gb|EEG32572.1| hypothetical protein NEIFLAOT_02375 [Neisseria flavescens
NRL30031/H210]
gi|241319174|gb|EER55652.1| DNA-directed RNA polymerase, omega subunit [Neisseria flavescens
SK114]
gi|284797508|gb|EFC52855.1| DNA-directed RNA polymerase, omega subunit [Neisseria subflava
NJ9703]
gi|317400931|gb|EFV81586.1| DNA-directed RNA polymerase subunit omega [Neisseria mucosa C102]
Length = 68
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV-DVGKDKNTVVALREIASGTLS 59
MAR T EDC K+ N F L L+A+ R R L G P V D+ +K TV ALREIA+G +
Sbjct: 1 MARITTEDCTGKIPNHFDLTLVAARRARQLENGNTPLVDDIRNNKPTVTALREIAAGQIG 60
Query: 60 PDDLE 64
+ L
Sbjct: 61 TELLT 65
>gi|110833038|ref|YP_691897.1| DNA-directed RNA polymerase subunit omega [Alcanivorax
borkumensis SK2]
gi|123050795|sp|Q0VT95|RPOZ_ALCBS RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|110646149|emb|CAL15625.1| DNA-directed RNA polymerase, omega subunit [Alcanivorax
borkumensis SK2]
Length = 87
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++K+DNRF LVL+A R L G +P V DK TVVALREIA G ++
Sbjct: 1 MARVTVEDCLEKLDNRFELVLVAGKRAHQLQSGGKEPRVAWENDKPTVVALREIAEGLVT 60
Query: 60 PDDLEE 65
+ ++
Sbjct: 61 AESVDN 66
>gi|226942444|ref|YP_002797517.1| DNA-directed RNA polymerase subunit omega [Azotobacter vinelandii
DJ]
gi|259494382|sp|C1DI45|RPOZ_AZOVD RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226717371|gb|ACO76542.1| DNA-directed RNA polymerase, omega subunit, RpoZ [Azotobacter
vinelandii DJ]
Length = 87
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ VDNRF LV+LAS R R L+ G +P + DK TVVALREIA+G +
Sbjct: 1 MARVTVEDCLENVDNRFELVMLASKRARQLATGGKEPRLPWENDKPTVVALREIAAGLVD 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPT 84
+ + +D I + + E DS
Sbjct: 61 YNVIAQDEIVAEEPLFAAFEEDSNE 85
>gi|303325587|ref|ZP_07356030.1| DNA-directed RNA polymerase, omega subunit [Desulfovibrio sp.
3_1_syn3]
gi|302863503|gb|EFL86434.1| DNA-directed RNA polymerase, omega subunit [Desulfovibrio sp.
3_1_syn3]
Length = 79
Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC ++VDNRFLLV +A R +G +P ++ K V ALREIA+G + P
Sbjct: 1 MARITVEDCQERVDNRFLLVQMAIKRVHQYREGYEPLLETRN-KEVVTALREIAAGKVMP 59
Query: 61 DD 62
DD
Sbjct: 60 DD 61
>gi|221065453|ref|ZP_03541558.1| DNA-directed RNA polymerase, omega subunit [Comamonas
testosteroni KF-1]
gi|264679924|ref|YP_003279833.1| DNA-directed RNA polymerase subunit omega [Comamonas testosteroni
CNB-2]
gi|299529931|ref|ZP_07043359.1| DNA-directed RNA polymerase subunit omega [Comamonas testosteroni
S44]
gi|220710476|gb|EED65844.1| DNA-directed RNA polymerase, omega subunit [Comamonas
testosteroni KF-1]
gi|262210439|gb|ACY34537.1| DNA-directed RNA polymerase, omega subunit [Comamonas
testosteroni CNB-2]
gi|298722103|gb|EFI63032.1| DNA-directed RNA polymerase subunit omega [Comamonas testosteroni
S44]
Length = 67
Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVED ++++ NRF LVL A++R R L+QG P ++ K +V ALREIA G +
Sbjct: 1 MARITVEDSLEQIPNRFQLVLAATYRARMLNQGHTPKIETKN-KASVTALREIADGKVGL 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|332971859|gb|EGK10805.1| potassium-transporting ATPase subunit B [Kingella kingae ATCC
23330]
Length = 68
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/64 (53%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV-DVGKDKNTVVALREIASGTLS 59
MAR TVEDC + N F L L A+ R R L G P V DV DK TV ALREIA+G +
Sbjct: 1 MARITVEDCTPHIPNHFDLTLAAARRARQLENGTSPLVDDVRHDKPTVTALREIAAGQVG 60
Query: 60 PDDL 63
D L
Sbjct: 61 VDIL 64
>gi|108758122|ref|YP_633047.1| DNA-directed RNA polymerase subunit omega [Myxococcus xanthus DK
1622]
gi|123374265|sp|Q1D2S6|RPOZ_MYXXD RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|108462002|gb|ABF87187.1| DNA-directed RNA polymerase, omega subunit [Myxococcus xanthus DK
1622]
Length = 78
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ VDNRF LVLL + R R L GA+P ++ K+K V++LRE+A+G +
Sbjct: 1 MARVTVEDCLPLVDNRFALVLLGAKRARQLMAGARPILEQSKNKPPVLSLREVATGRVKF 60
Query: 61 D-DLEEDFIHSL 71
D D+ E
Sbjct: 61 DRDVREALSGKY 72
>gi|82523711|emb|CAI78492.1| DNA-directed RNA polymerase, subunit K [uncultured beta
proteobacterium]
Length = 67
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/63 (53%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TV+DCID NRF L L ++R R L+QG++P VD KDK+ V ALREIA+G +
Sbjct: 1 MARITVDDCIDMFPNRFELTLAVTYRARQLAQGSQPMVDT-KDKSVVTALREIAAGKVGR 59
Query: 61 DDL 63
+ L
Sbjct: 60 EIL 62
>gi|237748965|ref|ZP_04579445.1| DNA-directed RNA polymerase subunit omega [Oxalobacter formigenes
OXCC13]
gi|229380327|gb|EEO30418.1| DNA-directed RNA polymerase subunit omega [Oxalobacter formigenes
OXCC13]
Length = 67
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR T+EDC+ ++ NRF L L A++R R L QG P V+ KDK TV+ALREIA+ +
Sbjct: 1 MARITIEDCLKEIPNRFELTLCATYRARQLLQGHTPKVE-AKDKMTVIALREIAAAKVGK 59
Query: 61 DDLEE 65
+ L++
Sbjct: 60 EMLKK 64
>gi|33597549|ref|NP_885192.1| DNA-directed RNA polymerase subunit omega [Bordetella
parapertussis 12822]
gi|33601948|ref|NP_889508.1| DNA-directed RNA polymerase subunit omega [Bordetella
bronchiseptica RB50]
gi|187478448|ref|YP_786472.1| DNA-directed RNA polymerase subunit omega [Bordetella avium 197N]
gi|41688651|sp|Q7W6B1|RPOZ_BORPA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|41688652|sp|Q7WI79|RPOZ_BORBR RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|114158575|sp|Q2L066|RPOZ_BORA1 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|33573977|emb|CAE38296.1| DNA-directed RNA polymerase omega chain [Bordetella
parapertussis]
gi|33576386|emb|CAE33464.1| DNA-directed RNA polymerase omega chain [Bordetella
bronchiseptica RB50]
gi|115423034|emb|CAJ49565.1| DNA-directed RNA polymerase omega chain [Bordetella avium 197N]
Length = 67
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/65 (53%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++++ NRF L L A++R R L+QG P +D KDK TV ALREIASG
Sbjct: 1 MARITVEDCLNQIPNRFKLTLAATYRARELAQGHAPRLDS-KDKPTVTALREIASGLTGL 59
Query: 61 DDLEE 65
+ L +
Sbjct: 60 EMLRK 64
>gi|325266043|ref|ZP_08132729.1| potassium-transporting ATPase subunit B [Kingella denitrificans
ATCC 33394]
gi|324982681|gb|EGC18307.1| potassium-transporting ATPase subunit B [Kingella denitrificans
ATCC 33394]
Length = 68
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/64 (51%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV-DVGKDKNTVVALREIASGTLS 59
MAR TVEDC + N F L L A+ R R L G P V D+ DK TV ALREIA+G +
Sbjct: 1 MARITVEDCTPHIPNHFDLTLAAARRARQLENGTSPLVDDIRHDKPTVTALREIAAGQVG 60
Query: 60 PDDL 63
D L
Sbjct: 61 VDIL 64
>gi|192360971|ref|YP_001984023.1| DNA-directed RNA polymerase subunit omega [Cellvibrio japonicus
Ueda107]
gi|190687136|gb|ACE84814.1| DNA-directed RNA polymerase, omega chain [Cellvibrio japonicus
Ueda107]
Length = 88
Score = 92.6 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+ VDNRF LV++ S R R L+ G P V V DK TV+ALREI G +
Sbjct: 6 MARITVEDCLAHVDNRFELVMVGSKRARQLAIGGKDPFVPVENDKPTVIALREIEEGFID 65
Query: 60 PDDLEEDFIHSLQKHVEIDEPD 81
L E + K + + +
Sbjct: 66 ASILLEKDVLPQPKQEPVYDTE 87
>gi|95930970|ref|ZP_01313699.1| DNA-directed RNA polymerase, omega subunit [Desulfuromonas
acetoxidans DSM 684]
gi|95132979|gb|EAT14649.1| DNA-directed RNA polymerase, omega subunit [Desulfuromonas
acetoxidans DSM 684]
Length = 69
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/62 (50%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK-DKNTVVALREIASGTLS 59
MAR TVEDC++K+DNRFLL ++A+ R + L +GA P ++ +K V ALREIA+G +
Sbjct: 1 MARVTVEDCLEKIDNRFLLAMVAAKRAKQLYRGATPLIENVSGNKKVVQALREIAAGKIE 60
Query: 60 PD 61
D
Sbjct: 61 FD 62
>gi|229593359|ref|YP_002875478.1| DNA-directed RNA polymerase subunit omega [Pseudomonas
fluorescens SBW25]
gi|312963861|ref|ZP_07778332.1| DNA-directed RNA polymerase subunit omega [Pseudomonas
fluorescens WH6]
gi|259494506|sp|C3K482|RPOZ_PSEFS RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|229365225|emb|CAY53525.1| DNA-directed RNA polymerase omega chain [Pseudomonas fluorescens
SBW25]
gi|311281896|gb|EFQ60506.1| DNA-directed RNA polymerase subunit omega [Pseudomonas
fluorescens WH6]
Length = 87
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/85 (44%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ VDNRF LV+L++ R R L+ G +P V DK TVVALREIA G +S
Sbjct: 1 MARVTVEDCLEHVDNRFELVMLSTKRARQLATGGKEPLVQWENDKPTVVALREIAEGLMS 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPT 84
+ + I + E +S
Sbjct: 61 YEFIANAEIVEDEPLFAAFEDESNE 85
>gi|294670430|ref|ZP_06735312.1| hypothetical protein NEIELOOT_02149 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307894|gb|EFE49137.1| hypothetical protein NEIELOOT_02149 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 68
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/67 (53%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV-DVGKDKNTVVALREIASGTLS 59
MAR TVEDC DK+ N F L L A+ R R L G P V DV DK TV ALREIA+G ++
Sbjct: 1 MARITVEDCSDKIPNHFDLTLAAARRARQLENGTAPLVEDVRNDKPTVTALREIAAGQIT 60
Query: 60 PDDLEED 66
D L
Sbjct: 61 ADILNRS 67
>gi|146280855|ref|YP_001171008.1| DNA-directed RNA polymerase subunit omega [Pseudomonas stutzeri
A1501]
gi|166230348|sp|A4VGR5|RPOZ_PSEU5 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|145569060|gb|ABP78166.1| RNA polymerase omega subunit [Pseudomonas stutzeri A1501]
gi|327479123|gb|AEA82433.1| DNA-directed RNA polymerase subunit omega [Pseudomonas stutzeri
DSM 4166]
Length = 87
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+D VDNRF LV+LA+ R R L+ G +P V DK TVVALREIASG +
Sbjct: 1 MARVTVEDCLDNVDNRFELVMLATKRARQLATGGKEPKVAWENDKPTVVALREIASGLVD 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPT 84
D + +D I + E +
Sbjct: 61 YDVIAQDEIVDDEPLFTQYEEEPNE 85
>gi|148244528|ref|YP_001219222.1| DNA-directed RNA polymerase omega subunit [Candidatus
Vesicomyosocius okutanii HA]
gi|166230373|sp|A5CX12|RPOZ_VESOH RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|146326355|dbj|BAF61498.1| DNA-directed RNA polymerase omega subunit [Candidatus
Vesicomyosocius okutanii HA]
Length = 110
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 42/109 (38%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+D V+NRF LVL+A+ R LS G KP ++ GKDK TVVALREI +G +
Sbjct: 1 MARVTVEDCLDHVENRFELVLIAAKRAHQLSSGGYKPLLNAGKDKPTVVALREIEAGLID 60
Query: 60 PDDLEEDFI--HSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGD 106
L E ++ L ++ + +E D +++E +
Sbjct: 61 SSILSEIYVIDEQLSAQQKVLDSVKMSEIKDELSVTAVDKVIDEITEIE 109
>gi|15677509|ref|NP_274665.1| DNA-directed RNA polymerase omega chain [Neisseria meningitidis
MC58]
gi|59801661|ref|YP_208373.1| hypothetical protein NGO1309 [Neisseria gonorrhoeae FA 1090]
gi|121635301|ref|YP_975546.1| DNA-directed RNA polymerase omega chain [Neisseria meningitidis
FAM18]
gi|194099073|ref|YP_002002155.1| DNA-directed RNA polymerase omega chain [Neisseria gonorrhoeae
NCCP11945]
gi|218768683|ref|YP_002343195.1| DNA-directed RNA polymerase omega chain [Neisseria meningitidis
Z2491]
gi|239999380|ref|ZP_04719304.1| DNA-directed RNA polymerase omega chain [Neisseria gonorrhoeae
35/02]
gi|240014555|ref|ZP_04721468.1| DNA-directed RNA polymerase omega chain [Neisseria gonorrhoeae
DGI18]
gi|240017002|ref|ZP_04723542.1| DNA-directed RNA polymerase omega chain [Neisseria gonorrhoeae
FA6140]
gi|240081364|ref|ZP_04725907.1| DNA-directed RNA polymerase omega chain [Neisseria gonorrhoeae
FA19]
gi|240113573|ref|ZP_04728063.1| DNA-directed RNA polymerase omega chain [Neisseria gonorrhoeae
MS11]
gi|240116079|ref|ZP_04730141.1| DNA-directed RNA polymerase omega chain [Neisseria gonorrhoeae
PID18]
gi|240118363|ref|ZP_04732425.1| DNA-directed RNA polymerase omega chain [Neisseria gonorrhoeae
PID1]
gi|240121077|ref|ZP_04734039.1| DNA-directed RNA polymerase omega chain [Neisseria gonorrhoeae
PID24-1]
gi|240123908|ref|ZP_04736864.1| DNA-directed RNA polymerase omega chain [Neisseria gonorrhoeae
PID332]
gi|240126108|ref|ZP_04738994.1| DNA-directed RNA polymerase omega chain [Neisseria gonorrhoeae
SK-92-679]
gi|240128583|ref|ZP_04741244.1| DNA-directed RNA polymerase omega chain [Neisseria gonorrhoeae
SK-93-1035]
gi|254494100|ref|ZP_05107271.1| DNA-directed RNA polymerase subunit omega [Neisseria gonorrhoeae
1291]
gi|254805417|ref|YP_003083638.1| DNA-directed RNA polymerase omega chain [Neisseria meningitidis
alpha14]
gi|260440112|ref|ZP_05793928.1| DNA-directed RNA polymerase omega chain [Neisseria gonorrhoeae
DGI2]
gi|268595201|ref|ZP_06129368.1| DNA-directed RNA polymerase subunit omega [Neisseria gonorrhoeae
35/02]
gi|268597463|ref|ZP_06131630.1| DNA-directed RNA polymerase subunit omega [Neisseria gonorrhoeae
FA19]
gi|268599635|ref|ZP_06133802.1| DNA-directed RNA polymerase subunit omega [Neisseria gonorrhoeae
MS11]
gi|268601746|ref|ZP_06135913.1| DNA-directed RNA polymerase subunit omega [Neisseria gonorrhoeae
PID18]
gi|268604074|ref|ZP_06138241.1| DNA-directed RNA polymerase subunit omega [Neisseria gonorrhoeae
PID1]
gi|268682532|ref|ZP_06149394.1| DNA-directed RNA polymerase subunit omega [Neisseria gonorrhoeae
PID332]
gi|268684696|ref|ZP_06151558.1| DNA-directed RNA polymerase subunit omega [Neisseria gonorrhoeae
SK-92-679]
gi|268686973|ref|ZP_06153835.1| DNA-directed RNA polymerase subunit omega [Neisseria gonorrhoeae
SK-93-1035]
gi|291043399|ref|ZP_06569122.1| DNA-directed RNA polymerase subunit omega [Neisseria gonorrhoeae
DGI2]
gi|293398702|ref|ZP_06642880.1| DNA-directed RNA polymerase, omega subunit [Neisseria gonorrhoeae
F62]
gi|296314891|ref|ZP_06864832.1| DNA-directed RNA polymerase, omega subunit [Neisseria
polysaccharea ATCC 43768]
gi|304386865|ref|ZP_07369128.1| DNA-directed RNA polymerase subunit omega [Neisseria meningitidis
ATCC 13091]
gi|313667964|ref|YP_004048248.1| DNA-directed RNA polymerase omega chain [Neisseria lactamica
ST-640]
gi|54039286|sp|P66724|RPOZ_NEIMB RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|54042195|sp|P66723|RPOZ_NEIMA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|75432442|sp|Q5F776|RPOZ_NEIG1 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166230336|sp|A1KV69|RPOZ_NEIMF RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703154|sp|B4RN20|RPOZ_NEIG2 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|7226913|gb|AAF42009.1| DNA-directed RNA polymerase, omega subunit [Neisseria
meningitidis MC58]
gi|59718556|gb|AAW89961.1| putative RNA polymerase, omega subunit [Neisseria gonorrhoeae FA
1090]
gi|120867007|emb|CAM10770.1| DNA-directed RNA polymerase omega chain [Neisseria meningitidis
FAM18]
gi|121052691|emb|CAM09033.1| DNA-directed RNA polymerase omega chain [Neisseria meningitidis
Z2491]
gi|193934363|gb|ACF30187.1| DNA-directed RNA polymerase omega chain [Neisseria gonorrhoeae
NCCP11945]
gi|226513140|gb|EEH62485.1| DNA-directed RNA polymerase subunit omega [Neisseria gonorrhoeae
1291]
gi|254668959|emb|CBA07244.1| DNA-directed RNA polymerase omega chain [Neisseria meningitidis
alpha14]
gi|254669564|emb|CBA03545.1| DNA-directed RNA polymerase omega chain [Neisseria meningitidis
alpha153]
gi|261392116|emb|CAX49613.1| DNA-directed RNA polymerase omega chain (RNAP omega subunit;
transcriptase omega chain; RNA polymerase omega
subunit) [Neisseria meningitidis 8013]
gi|268548590|gb|EEZ44008.1| DNA-directed RNA polymerase subunit omega [Neisseria gonorrhoeae
35/02]
gi|268551251|gb|EEZ46270.1| DNA-directed RNA polymerase subunit omega [Neisseria gonorrhoeae
FA19]
gi|268583766|gb|EEZ48442.1| DNA-directed RNA polymerase subunit omega [Neisseria gonorrhoeae
MS11]
gi|268585877|gb|EEZ50553.1| DNA-directed RNA polymerase subunit omega [Neisseria gonorrhoeae
PID18]
gi|268588205|gb|EEZ52881.1| DNA-directed RNA polymerase subunit omega [Neisseria gonorrhoeae
PID1]
gi|268622816|gb|EEZ55216.1| DNA-directed RNA polymerase subunit omega [Neisseria gonorrhoeae
PID332]
gi|268624980|gb|EEZ57380.1| DNA-directed RNA polymerase subunit omega [Neisseria gonorrhoeae
SK-92-679]
gi|268627257|gb|EEZ59657.1| DNA-directed RNA polymerase subunit omega [Neisseria gonorrhoeae
SK-93-1035]
gi|291013005|gb|EFE04988.1| DNA-directed RNA polymerase subunit omega [Neisseria gonorrhoeae
DGI2]
gi|291611173|gb|EFF40270.1| DNA-directed RNA polymerase, omega subunit [Neisseria gonorrhoeae
F62]
gi|296838281|gb|EFH22219.1| DNA-directed RNA polymerase, omega subunit [Neisseria
polysaccharea ATCC 43768]
gi|304339064|gb|EFM05155.1| DNA-directed RNA polymerase subunit omega [Neisseria meningitidis
ATCC 13091]
gi|308389782|gb|ADO32102.1| DNA-directed RNA polymerase omega chain [Neisseria meningitidis
alpha710]
gi|309378454|emb|CBX22949.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|313005426|emb|CBN86860.1| DNA-directed RNA polymerase omega chain [Neisseria lactamica
020-06]
gi|316984805|gb|EFV63762.1| DNA-directed RNA polymerase, omega subunit [Neisseria
meningitidis H44/76]
gi|317164628|gb|ADV08169.1| hypothetical protein NGTW08_1201 [Neisseria gonorrhoeae
TCDC-NG08107]
gi|319410914|emb|CBY91309.1| DNA-directed RNA polymerase omega chain (RNAP omega subunit;
transcriptase omega chain; RNA polymerase omega
subunit) [Neisseria meningitidis WUE 2594]
gi|325132844|gb|EGC55524.1| DNA-directed RNA polymerase, omega subunit [Neisseria
meningitidis M6190]
gi|325134806|gb|EGC57443.1| DNA-directed RNA polymerase, omega subunit [Neisseria
meningitidis M13399]
gi|325136690|gb|EGC59290.1| DNA-directed RNA polymerase, omega subunit [Neisseria
meningitidis M0579]
gi|325138746|gb|EGC61298.1| DNA-directed RNA polymerase, omega subunit [Neisseria
meningitidis ES14902]
gi|325140877|gb|EGC63387.1| DNA-directed RNA polymerase, omega subunit [Neisseria
meningitidis CU385]
gi|325144914|gb|EGC67199.1| DNA-directed RNA polymerase, omega subunit [Neisseria
meningitidis M01-240013]
gi|325199746|gb|ADY95201.1| DNA-directed RNA polymerase, omega subunit [Neisseria
meningitidis H44/76]
gi|325201681|gb|ADY97135.1| DNA-directed RNA polymerase, omega subunit [Neisseria
meningitidis M01-240149]
gi|325204622|gb|ADZ00076.1| DNA-directed RNA polymerase, omega subunit [Neisseria
meningitidis M01-240355]
gi|325205621|gb|ADZ01074.1| DNA-directed RNA polymerase, omega subunit [Neisseria
meningitidis M04-240196]
gi|325208583|gb|ADZ04035.1| DNA-directed RNA polymerase, omega subunit [Neisseria
meningitidis NZ-05/33]
Length = 68
Score = 91.8 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV-DVGKDKNTVVALREIASGTLS 59
MAR T EDC K+ N F L L+A+ R R L G P V DV +K TV ALREIA+G +
Sbjct: 1 MARITTEDCTGKISNHFDLTLVAARRARQLENGNTPLVDDVRNNKPTVTALREIAAGHIG 60
Query: 60 PDDLE 64
+ L
Sbjct: 61 TELLT 65
>gi|292490885|ref|YP_003526324.1| DNA-directed RNA polymerase subunit omega [Nitrosococcus
halophilus Nc4]
gi|291579480|gb|ADE13937.1| DNA-directed RNA polymerase, omega subunit [Nitrosococcus
halophilus Nc4]
Length = 86
Score = 91.8 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCI ++NRFLLVL A+ R R L+ GA+P++ DK TV+ALREIA G +S
Sbjct: 1 MARLTVEDCIGNINNRFLLVLAAAKRARQLALGAEPSLPWDNDKPTVMALREIAEGNISV 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDF 89
++ S ++H E +
Sbjct: 61 GVMDSA---SAREHAEESVVSEDEVREES 86
>gi|77461771|ref|YP_351278.1| DNA-directed RNA polymerase subunit omega [Pseudomonas
fluorescens Pf0-1]
gi|115305600|sp|Q3K4L7|RPOZ_PSEPF RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|77385774|gb|ABA77287.1| DNA-directed RNA polymerase subunit omega [Pseudomonas
fluorescens Pf0-1]
gi|108792614|dbj|BAE95779.1| DNA-directed RNA polymerase omega subunit [Pseudomonas sp. MIS38]
Length = 87
Score = 91.8 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/69 (52%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ V+NRF LV+L++ R R L+ G +P V DK TVVALREIA G +S
Sbjct: 1 MARVTVEDCLEHVENRFELVMLSTKRARQLATGGKEPLVQWENDKPTVVALREIAEGLMS 60
Query: 60 PDDLEEDFI 68
+ + E I
Sbjct: 61 YEFIAEQEI 69
>gi|33592666|ref|NP_880310.1| DNA-directed RNA polymerase subunit omega [Bordetella pertussis
Tohama I]
gi|41688650|sp|Q7VXZ4|RPOZ_BORPE RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|33572312|emb|CAE41866.1| DNA-directed RNA polymerase omega chain [Bordetella pertussis
Tohama I]
gi|332382083|gb|AEE66930.1| DNA-directed RNA polymerase subunit omega [Bordetella pertussis
CS]
Length = 67
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 35/65 (53%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++++ NRF L L A++R R L QG P +D KDK TV ALREIASG
Sbjct: 1 MARITVEDCLNQIPNRFKLTLAATYRARELVQGHAPRLDS-KDKPTVTALREIASGLTGL 59
Query: 61 DDLEE 65
+ L +
Sbjct: 60 EMLRK 64
>gi|161870507|ref|YP_001599679.1| DNA-directed RNA polymerase omega chain [Neisseria meningitidis
053442]
gi|189043990|sp|A9M1N1|RPOZ_NEIM0 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|161596060|gb|ABX73720.1| DNA-directed RNA polymerase omega chain [Neisseria meningitidis
053442]
gi|325128726|gb|EGC51590.1| DNA-directed RNA polymerase, omega subunit [Neisseria
meningitidis N1568]
gi|325130718|gb|EGC53457.1| DNA-directed RNA polymerase, omega subunit [Neisseria
meningitidis OX99.30304]
gi|325142840|gb|EGC65209.1| DNA-directed RNA polymerase, omega subunit [Neisseria
meningitidis 961-5945]
gi|325198760|gb|ADY94216.1| DNA-directed RNA polymerase, omega subunit [Neisseria
meningitidis G2136]
Length = 68
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV-DVGKDKNTVVALREIASGTLS 59
MAR T EDC K+ N F L L+A+ R R L G P V D +K TV ALREIA+G +
Sbjct: 1 MARITTEDCTGKISNHFDLTLVAARRARQLENGNTPLVDDARNNKPTVTALREIAAGHIG 60
Query: 60 PDDLE 64
+ L
Sbjct: 61 TELLT 65
>gi|330977346|gb|EGH77299.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
pv. aptata str. DSM 50252]
Length = 58
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 32/57 (56%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASG 56
MAR TVEDC++ VDNRF LV+L++ R R L+ G +P + DK TV+ALREIA+G
Sbjct: 1 MARVTVEDCLEHVDNRFELVMLSTKRARQLATGGKEPKLAWENDKPTVMALREIAAG 57
>gi|289209163|ref|YP_003461229.1| DNA-directed RNA polymerase subunit omega [Thioalkalivibrio sp.
K90mix]
gi|288944794|gb|ADC72493.1| DNA-directed RNA polymerase, omega subunit [Thioalkalivibrio sp.
K90mix]
Length = 91
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 36/65 (55%), Positives = 47/65 (72%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++KVDNRF LVL+A+ R RH++ G +P V DK TV+ALREIA G +
Sbjct: 1 MARVTVEDCLEKVDNRFELVLMAARRARHIAHGKEPRVSEDNDKPTVIALREIAEGLVGT 60
Query: 61 DDLEE 65
+ +E
Sbjct: 61 EVFDE 65
>gi|255067916|ref|ZP_05319771.1| DNA-directed RNA polymerase, omega subunit [Neisseria sicca ATCC
29256]
gi|261363620|ref|ZP_05976503.1| DNA-directed RNA polymerase, omega subunit [Neisseria mucosa ATCC
25996]
gi|255047798|gb|EET43262.1| DNA-directed RNA polymerase, omega subunit [Neisseria sicca ATCC
29256]
gi|288568148|gb|EFC89708.1| DNA-directed RNA polymerase, omega subunit [Neisseria mucosa ATCC
25996]
Length = 68
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV-DVGKDKNTVVALREIASGTLS 59
MAR T EDC K+ N F L L+A+ R R L G P V D+ +K TV ALREIA+G +
Sbjct: 1 MARITTEDCTGKIPNHFDLTLVAARRARQLENGNAPMVDDIRNNKPTVTALREIAAGQIG 60
Query: 60 PDDLE 64
+ L
Sbjct: 61 TELLT 65
>gi|145589260|ref|YP_001155857.1| DNA-directed RNA polymerase subunit omega [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|171463503|ref|YP_001797616.1| DNA-directed RNA polymerase, omega subunit [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|189043993|sp|A4SXS9|RPOZ_POLSQ RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703157|sp|B1XUH5|RPOZ_POLNS RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|145047666|gb|ABP34293.1| DNA-directed RNA polymerase subunit omega [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|171193041|gb|ACB44002.1| DNA-directed RNA polymerase, omega subunit [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 67
Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 35/65 (53%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ + NRF LVL A++R R L QG P V+ +DK TVVALRE+A+G
Sbjct: 1 MARITVEDCLKTIPNRFELVLAATYRARQLVQGHSPRVES-RDKATVVALREVAAGVTDR 59
Query: 61 DDLEE 65
D L +
Sbjct: 60 DMLTK 64
>gi|330812600|ref|YP_004357062.1| DNA-directed RNA polymerase, omega chain [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327380708|gb|AEA72058.1| DNA-directed RNA polymerase, omega chain [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 87
Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ V+NRF LV+L++ R R L+ G +P V DK TVVALREIA G +S
Sbjct: 1 MARVTVEDCLEHVENRFELVMLSTKRARQLATGGKEPLVQWENDKPTVVALREIAEGLMS 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPT 84
+ + I + E +S
Sbjct: 61 YEFIANAEIVEDEPLFAAFEDESNE 85
>gi|114330628|ref|YP_746850.1| DNA-directed RNA polymerase, omega subunit [Nitrosomonas eutropha
C91]
gi|122312890|sp|Q0AD35|RPOZ_NITEC RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|114307642|gb|ABI58885.1| DNA-directed RNA polymerase subunit omega [Nitrosomonas eutropha
C91]
Length = 67
Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 41/63 (65%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ + NRF + L A+ R R +S G+ P +D G+DK V+ALRE+A +
Sbjct: 1 MARITVEDCLKVIPNRFNMTLAATVRARQISVGSTPMIDAGRDKPIVIALRELAQKKYNE 60
Query: 61 DDL 63
+ L
Sbjct: 61 NIL 63
>gi|319943403|ref|ZP_08017685.1| potassium-transporting ATPase subunit B [Lautropia mirabilis ATCC
51599]
gi|319743218|gb|EFV95623.1| potassium-transporting ATPase subunit B [Lautropia mirabilis ATCC
51599]
Length = 67
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVED + ++ NRF L L+A++R R L+QG P V+ K TV ALRE+A+G +
Sbjct: 1 MARITVEDSLKQIPNRFELTLIATYRARMLAQGHTPKVESRN-KPTVTALREVAAGQVGR 59
Query: 61 DDLE 64
+ L
Sbjct: 60 EMLR 63
>gi|162455540|ref|YP_001617907.1| putative DNA-directed RNA polymerase, omega subunit [Sorangium
cellulosum 'So ce 56']
gi|161166122|emb|CAN97427.1| putative DNA-directed RNA polymerase, omega subunit [Sorangium
cellulosum 'So ce 56']
Length = 93
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 29/58 (50%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTL 58
MAR TVEDC+++ +NRF LV+LA++RTR L +G+ V K V +LREIA+G +
Sbjct: 14 MARVTVEDCLEREENRFALVVLAANRTRQLMKGSDALVKTKN-KPAVTSLREIAAGKV 70
>gi|261399918|ref|ZP_05986043.1| DNA-directed RNA polymerase, omega subunit [Neisseria lactamica
ATCC 23970]
gi|269210363|gb|EEZ76818.1| DNA-directed RNA polymerase, omega subunit [Neisseria lactamica
ATCC 23970]
Length = 68
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV-DVGKDKNTVVALREIASGTLS 59
MAR T EDC K+ N F L L+A R R L G P V DV +K TV ALREIA+G +
Sbjct: 1 MARITTEDCTGKISNHFDLTLVAVRRARQLENGNTPLVDDVRNNKPTVTALREIAAGHIG 60
Query: 60 PDDLE 64
+ L
Sbjct: 61 TELLT 65
>gi|118602425|ref|YP_903640.1| DNA-directed RNA polymerase, omega subunit [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
gi|166230356|sp|A1AW62|RPOZ_RUTMC RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|118567364|gb|ABL02169.1| DNA-directed RNA polymerase subunit omega [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
Length = 79
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 38/80 (47%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVE+C++ V+NRF LVL+A+ R LS G KP +D GKDK TVVALREI +G +
Sbjct: 1 MARVTVEECLEHVENRFELVLVAAKRAHQLSSGDYKPLLDAGKDKPTVVALREIEAGLID 60
Query: 60 PDDLEEDFIHSLQKHVEIDE 79
L E + +Q+ + +
Sbjct: 61 ASILSET--YEMQEQLSAQQ 78
>gi|262198603|ref|YP_003269812.1| DNA-directed RNA polymerase subunit omega [Haliangium ochraceum
DSM 14365]
gi|262081950|gb|ACY17919.1| DNA-directed RNA polymerase, omega subunit [Haliangium ochraceum
DSM 14365]
Length = 80
Score = 90.3 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 36/68 (52%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++KV NRF LV+LAS R R L++G + TVD K V ALREIA GT++
Sbjct: 1 MARVTVEDCLEKVPNRFALVVLASERARQLARGGEATVDCDN-KPAVTALREIARGTVAF 59
Query: 61 DDLEEDFI 68
++ + I
Sbjct: 60 QEVVREVI 67
>gi|71900261|ref|ZP_00682398.1| RNA polymerase, omega subunit [Xylella fastidiosa Ann-1]
gi|71729974|gb|EAO32068.1| RNA polymerase, omega subunit [Xylella fastidiosa Ann-1]
Length = 111
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 12/108 (11%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK--DKNTVVALREIASGTL 58
MAR TVEDC++ V+NRF LV++AS R R L+ G P ++ DK TV+ALREIA+ +
Sbjct: 13 MARITVEDCLEVVNNRFELVMMASKRARQLANGVPPLIENTNSEDKPTVLALREIAARKI 72
Query: 59 SPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGD 106
+ ++E E W E ++ MS+ D
Sbjct: 73 NSKMIDE----------IEKAERERAEREAMEWAAAEVVADEDMSKSD 110
>gi|298369309|ref|ZP_06980627.1| DNA-directed RNA polymerase, omega subunit [Neisseria sp. oral
taxon 014 str. F0314]
gi|298283312|gb|EFI24799.1| DNA-directed RNA polymerase, omega subunit [Neisseria sp. oral
taxon 014 str. F0314]
Length = 68
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV-DVGKDKNTVVALREIASGTLS 59
MAR T EDC K+ N F L L+A+ R R L G P V D+ +K TV ALREIA+G +
Sbjct: 1 MARITTEDCTGKIPNHFDLTLVAARRARQLENGNTPLVDDIRHNKPTVTALREIAAGEIG 60
Query: 60 PDDLE 64
+ L+
Sbjct: 61 MELLK 65
>gi|220936343|ref|YP_002515242.1| RNA polymerase, omega subunit [Thioalkalivibrio sp. HL-EbGR7]
gi|254809268|sp|B8GQN1|RPOZ_THISH RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|219997653|gb|ACL74255.1| RNA polymerase, omega subunit [Thioalkalivibrio sp. HL-EbGR7]
Length = 87
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 46/82 (56%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ +DNRF LVL+A+ R R LS G +P V DK TV+ALREIA G +
Sbjct: 1 MARITVEDCLTNMDNRFQLVLVAAKRARQLSMGHQPRVAEENDKPTVIALREIADGHVGR 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDS 82
+ L+E D
Sbjct: 61 EVLDEVVAEEHAAVSSRISEDE 82
>gi|254468889|ref|ZP_05082295.1| DNA-directed RNA polymerase, omega subunit [beta proteobacterium
KB13]
gi|207087699|gb|EDZ64982.1| DNA-directed RNA polymerase, omega subunit [beta proteobacterium
KB13]
Length = 88
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK-DKNTVVALREIASGTLS 59
MAR TV+DC+ K+ NRF L L+AS R R L+ GA+ +D DK +V+ALREIA+G +
Sbjct: 1 MARITVDDCLTKIPNRFQLTLIASIRARQLANGAESMIDNVNEDKPSVLALREIAAGAIG 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPT 84
+ L + S EP+ +
Sbjct: 61 LELLTGNQPSSSDDSQVTVEPEEQS 85
>gi|149376202|ref|ZP_01893967.1| RNA polymerase omega subunit [Marinobacter algicola DG893]
gi|149359607|gb|EDM48066.1| RNA polymerase omega subunit [Marinobacter algicola DG893]
Length = 70
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 38/67 (56%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQ-GAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ VDNRF LV+LA+ R R ++ G +P V DK TV+ALREIA G +S
Sbjct: 1 MARVTVEDCLENVDNRFQLVMLATKRARQIATKGFEPLVAEENDKPTVIALREIAEGKIS 60
Query: 60 PDDLEED 66
D L ED
Sbjct: 61 RDLLTED 67
>gi|254784429|ref|YP_003071857.1| DNA-directed RNA polymerase subunit omega [Teredinibacter
turnerae T7901]
gi|259494511|sp|C5BLF6|RPOZ_TERTT RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|237684828|gb|ACR12092.1| DNA-directed RNA polymerase, omega subunit [Teredinibacter
turnerae T7901]
Length = 93
Score = 89.9 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 35/66 (53%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+D VDNRF LV++ + R R L+ QG P V DK TV+ALREI G +
Sbjct: 1 MARITVEDCLDHVDNRFELVIVGTKRARQLAVQGKTPMVPEENDKPTVIALREIEEGFID 60
Query: 60 PDDLEE 65
L+E
Sbjct: 61 ASILDE 66
>gi|49073630|gb|AAT49334.1| PA5337 [synthetic construct]
Length = 89
Score = 89.9 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 40/87 (45%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+D VDNRF LV+LA+ R R L+ G +P V DK TVVALREIASG +
Sbjct: 1 MARVTVEDCLDNVDNRFELVMLATKRARQLATGGKEPKVAWENDKPTVVALREIASGLVD 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTEN 86
+ ++++ I + + ++ TE
Sbjct: 61 ENVVQQEDIVEDEPLFAAFDDEANTEA 87
>gi|294788874|ref|ZP_06754115.1| DNA-directed RNA polymerase, omega subunit [Simonsiella muelleri
ATCC 29453]
gi|294483356|gb|EFG31042.1| DNA-directed RNA polymerase, omega subunit [Simonsiella muelleri
ATCC 29453]
Length = 68
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/64 (50%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV-DVGKDKNTVVALREIASGTLS 59
M+R TVEDCI K+ N F L L A+ R R L G P + DV +K TV ALREIA+G +
Sbjct: 1 MSRITVEDCISKIPNHFDLTLAAARRARQLENGTSPLIDDVRNNKATVTALREIAAGQIG 60
Query: 60 PDDL 63
+ L
Sbjct: 61 AEIL 64
>gi|146309403|ref|YP_001189868.1| DNA-directed RNA polymerase subunit omega [Pseudomonas mendocina
ymp]
gi|330505634|ref|YP_004382503.1| DNA-directed RNA polymerase subunit omega [Pseudomonas mendocina
NK-01]
gi|166230346|sp|A4Y0M0|RPOZ_PSEMY RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|145577604|gb|ABP87136.1| DNA-directed RNA polymerase subunit omega [Pseudomonas mendocina
ymp]
gi|328919920|gb|AEB60751.1| DNA-directed RNA polymerase subunit omega [Pseudomonas mendocina
NK-01]
Length = 87
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+D VDNRF LV+LA+ R+R L+ G +P V DK TVVALREIA+G +
Sbjct: 1 MARVTVEDCLDNVDNRFELVMLATKRSRQLATGGKEPKVAWENDKPTVVALREIAAGLVD 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPT 84
+ + ++ I + E ++
Sbjct: 61 YEVVAQEDIVEEEPLFAAFEEEANE 85
>gi|92115349|ref|YP_575277.1| DNA-directed RNA polymerase, omega subunit [Chromohalobacter
salexigens DSM 3043]
gi|123265513|sp|Q1QSI0|RPOZ_CHRSD RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|91798439|gb|ABE60578.1| DNA-directed RNA polymerase subunit omega [Chromohalobacter
salexigens DSM 3043]
Length = 83
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 34/67 (50%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAK-PTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+D VDNRF LV++A+ R+R L++G++ + DK TV+ALREIA+G +
Sbjct: 1 MARVTVEDCLDNVDNRFQLVMVATQRSRQLARGSRDAQLPWENDKPTVMALREIAAGLVD 60
Query: 60 PDDLEED 66
L E
Sbjct: 61 RSILNEA 67
>gi|115305598|sp|Q4K3R3|RPOZ_PSEF5 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
Length = 87
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/85 (44%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ VDNRF LV+L++ R R L+ G +P V DK TVVALREIA G +
Sbjct: 1 MARVTVEDCLEHVDNRFELVMLSTKRARQLATGGKEPKVAWENDKPTVVALREIAEGLID 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPT 84
+ E I + E +S
Sbjct: 61 YAAIAEAEIVEDEPLFAAFEDESNE 85
>gi|71279750|ref|YP_271611.1| DNA-directed RNA polymerase subunit omega [Colwellia
psychrerythraea 34H]
gi|115305580|sp|Q47UB2|RPOZ_COLP3 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|71145490|gb|AAZ25963.1| DNA-directed RNA polymerase, omega subunit [Colwellia
psychrerythraea 34H]
Length = 95
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED +DKV NRF LVL+AS R R ++ G P VDV DK TV+ALREI +G ++
Sbjct: 1 MARVTVEDAVDKVGNRFDLVLVASRRARQIATGGKDPLVDVENDKPTVIALREIEAGLIT 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPE 95
D + Q ++ D + + + E
Sbjct: 61 TDIMNTS--DRAQ-QIQQDTAELDAVAAIVGGQQEE 93
>gi|239906632|ref|YP_002953373.1| DNA-directed RNA polymerase omega subunit [Desulfovibrio
magneticus RS-1]
gi|259494388|sp|C4XRE2|RPOZ_DESMR RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|239796498|dbj|BAH75487.1| DNA-directed RNA polymerase omega subunit [Desulfovibrio
magneticus RS-1]
Length = 74
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++K++NRFL+V +A R +G P V+ K V ALREIA+G + P
Sbjct: 1 MARITVEDCLEKINNRFLIVQMAIKRVHQYREGYDPLVECKN-KEVVTALREIAAGEVMP 59
Query: 61 DDLEEDF 67
D E+
Sbjct: 60 ADSIEEA 66
>gi|182681308|ref|YP_001829468.1| DNA-directed RNA polymerase subunit omega [Xylella fastidiosa M23]
gi|182631418|gb|ACB92194.1| DNA-directed RNA polymerase, omega subunit [Xylella fastidiosa M23]
Length = 111
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 12/108 (11%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK--DKNTVVALREIASGTL 58
MAR TVEDC++ V+NRF LV++AS R R L+ G P ++ DK TV+ALREIA+ +
Sbjct: 13 MARITVEDCLEVVNNRFELVMMASKRARQLANGVPPLIENTNSEDKPTVMALREIAARKI 72
Query: 59 SPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGD 106
+ ++E E W E ++ MS+ D
Sbjct: 73 NSKMIDE----------IEKAERERAEREAMEWAAAEVVADEDMSKSD 110
>gi|89093833|ref|ZP_01166779.1| DNA-directed RNA polymerase omega subunit [Oceanospirillum sp.
MED92]
gi|89081963|gb|EAR61189.1| DNA-directed RNA polymerase omega subunit [Oceanospirillum sp.
MED92]
Length = 70
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/66 (54%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ VDNRF LV++A+ R R L+ G +P V+ DK TVVALREIA G
Sbjct: 1 MARVTVEDCLENVDNRFQLVMVAAKRARQLATGGKEPKVEWENDKPTVVALREIAEGHTD 60
Query: 60 PDDLEE 65
L+E
Sbjct: 61 RTVLDE 66
>gi|254482661|ref|ZP_05095899.1| DNA-directed RNA polymerase, omega subunit [marine gamma
proteobacterium HTCC2148]
gi|214037020|gb|EEB77689.1| DNA-directed RNA polymerase, omega subunit [marine gamma
proteobacterium HTCC2148]
Length = 88
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+DC++ V NRF LV++AS R R ++ G P V+ DK TV+ALREIA G ++
Sbjct: 1 MARVTVQDCLENVANRFELVMVASKRARQIATGGKDPLVEEESDKPTVIALREIAEGLVT 60
Query: 60 PDDLE 64
D L
Sbjct: 61 ADILT 65
>gi|311693195|gb|ADP96068.1| DNA-directed RNA polymerase subunit omega [marine bacterium HP15]
Length = 70
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/67 (56%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQ-GAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ VDNRF LV+LA+ R R L+ GA+P V DK TV+ALREIA G ++
Sbjct: 1 MARVTVEDCLENVDNRFQLVMLATKRARQLATKGAEPMVAEENDKPTVIALREIAEGKIT 60
Query: 60 PDDLEED 66
D L+E+
Sbjct: 61 RDLLKEE 67
>gi|212704443|ref|ZP_03312571.1| hypothetical protein DESPIG_02499 [Desulfovibrio piger ATCC
29098]
gi|212672164|gb|EEB32647.1| hypothetical protein DESPIG_02499 [Desulfovibrio piger ATCC
29098]
Length = 79
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/63 (50%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC ++V+NRFLLV +A R R +G +P ++ K V ALREIA+G + P
Sbjct: 1 MARITVEDCQERVNNRFLLVQMAIKRVRQYREGYEPLIESRN-KEAVTALREIAAGKVLP 59
Query: 61 DDL 63
DD+
Sbjct: 60 DDM 62
>gi|157964717|ref|YP_001499541.1| DNA-directed RNA polymerase subunit omega [Rickettsia massiliae
MTU5]
gi|157844493|gb|ABV84994.1| DNA-directed RNA polymerase omega chain [Rickettsia massiliae MTU5]
Length = 162
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV--DVGKDKNTVVALREIASGTL 58
MAR T EDC + +RF LV+LA+ + L+ + +DK V+ALR IA+G +
Sbjct: 36 MARITAEDCNKIIPDRFRLVVLATRYAKLLNYKVETNQIKKEKRDKPPVIALRRIAAGKV 95
Query: 59 SPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEG 105
S LE+D I+SL+ I E + S+ K E L + E
Sbjct: 96 SVAQLEQDLINSLRTRTMI-ESFVNQDESEDVEEKFEYLPEVYIGED 141
>gi|307546994|ref|YP_003899473.1| DNA-directed RNA polymerase subunit omega [Halomonas elongata DSM
2581]
gi|307219018|emb|CBV44288.1| DNA-directed RNA polymerase subunit omega [Halomonas elongata DSM
2581]
Length = 92
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAK-PTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ V+NRF LV++++ R R LS+G++ + DK TV+ALREIA G +
Sbjct: 1 MARVTVEDCLENVENRFKLVMISTQRARQLSRGSRDALLPWENDKPTVMALREIAEGLVD 60
Query: 60 PDDLEEDF 67
L+E
Sbjct: 61 ASVLDEPL 68
>gi|218779091|ref|YP_002430409.1| DNA-directed RNA polymerase, omega subunit [Desulfatibacillum
alkenivorans AK-01]
gi|226703120|sp|B8F9J5|RPOZ_DESAA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|218760475|gb|ACL02941.1| DNA-directed RNA polymerase, omega subunit [Desulfatibacillum
alkenivorans AK-01]
Length = 68
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/62 (46%), Positives = 43/62 (69%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR T+EDC+ +V NRFLLV +A+ R R + +G++ V K+++ VVALREIA+ +
Sbjct: 1 MARITIEDCLKRVPNRFLLVHMAAKRVRQMREGSEYLVSSPKNEDIVVALREIAADKVYV 60
Query: 61 DD 62
D
Sbjct: 61 SD 62
>gi|51245333|ref|YP_065217.1| DNA-directed RNA polymerase, omega chain [Desulfotalea
psychrophila LSv54]
gi|50876370|emb|CAG36210.1| probable DNA-directed RNA polymerase, omega chain [Desulfotalea
psychrophila LSv54]
Length = 103
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 1 MARTTVEDCIDKV--DNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTL 58
MAR TVEDC+D+V DNRF L+ LA R QG +P + ++K V LREIA+G +
Sbjct: 17 MARITVEDCLDQVGKDNRFNLIHLAVKRIHQHRQG-EPFLAGERNKEVVNTLREIAAGKV 75
Query: 59 SPDDLEE 65
+ ++++
Sbjct: 76 TLANIDQ 82
>gi|15600530|ref|NP_254024.1| DNA-directed RNA polymerase subunit omega [Pseudomonas aeruginosa
PAO1]
gi|107104439|ref|ZP_01368357.1| hypothetical protein PaerPA_01005516 [Pseudomonas aeruginosa
PACS2]
gi|116053484|ref|YP_793811.1| DNA-directed RNA polymerase subunit omega [Pseudomonas aeruginosa
UCBPP-PA14]
gi|152984349|ref|YP_001351429.1| DNA-directed RNA polymerase subunit omega [Pseudomonas aeruginosa
PA7]
gi|218894440|ref|YP_002443310.1| DNA-directed RNA polymerase subunit omega [Pseudomonas aeruginosa
LESB58]
gi|254237969|ref|ZP_04931292.1| RNA polymerase omega subunit [Pseudomonas aeruginosa C3719]
gi|254243777|ref|ZP_04937099.1| RNA polymerase omega subunit [Pseudomonas aeruginosa 2192]
gi|296392197|ref|ZP_06881672.1| DNA-directed RNA polymerase subunit omega [Pseudomonas aeruginosa
PAb1]
gi|313106764|ref|ZP_07792980.1| RNA polymerase omega subunit [Pseudomonas aeruginosa 39016]
gi|13959477|sp|Q9HTM1|RPOZ_PSEAE RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|122256495|sp|Q02E25|RPOZ_PSEAB RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166230345|sp|A6VEE4|RPOZ_PSEA7 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703161|sp|B7V5M8|RPOZ_PSEA8 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|9951656|gb|AAG08722.1|AE004946_6 RNA polymerase omega subunit [Pseudomonas aeruginosa PAO1]
gi|115588705|gb|ABJ14720.1| RNA polymerase omega subunit [Pseudomonas aeruginosa UCBPP-PA14]
gi|126169900|gb|EAZ55411.1| RNA polymerase omega subunit [Pseudomonas aeruginosa C3719]
gi|126197155|gb|EAZ61218.1| RNA polymerase omega subunit [Pseudomonas aeruginosa 2192]
gi|150959507|gb|ABR81532.1| DNA-directed RNA polymerase, omega subunit [Pseudomonas
aeruginosa PA7]
gi|218774669|emb|CAW30486.1| RNA polymerase omega subunit [Pseudomonas aeruginosa LESB58]
gi|310879482|gb|EFQ38076.1| RNA polymerase omega subunit [Pseudomonas aeruginosa 39016]
Length = 88
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/87 (45%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+D VDNRF LV+LA+ R R L+ G +P V DK TVVALREIASG +
Sbjct: 1 MARVTVEDCLDNVDNRFELVMLATKRARQLATGGKEPKVAWENDKPTVVALREIASGLVD 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTEN 86
+ ++++ I + + ++ TE
Sbjct: 61 ENVVQQEDIVEDEPLFAAFDDEANTEA 87
>gi|329120503|ref|ZP_08249168.1| DNA-directed RNA polymerase subunit omega [Neisseria
bacilliformis ATCC BAA-1200]
gi|327461961|gb|EGF08291.1| DNA-directed RNA polymerase subunit omega [Neisseria
bacilliformis ATCC BAA-1200]
Length = 68
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/67 (52%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV-DVGKDKNTVVALREIASGTLS 59
MAR TVEDC DK+ N F L L A+ R R L G P V DV DK TV ALREIA+G ++
Sbjct: 1 MARITVEDCADKIPNHFDLTLAAARRARQLENGTAPLVDDVRHDKPTVTALREIAAGEVT 60
Query: 60 PDDLEED 66
+ L
Sbjct: 61 AEILNRS 67
>gi|328952658|ref|YP_004369992.1| DNA-directed RNA polymerase subunit omega [Desulfobacca
acetoxidans DSM 11109]
gi|328452982|gb|AEB08811.1| DNA-directed RNA polymerase subunit omega [Desulfobacca
acetoxidans DSM 11109]
Length = 82
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/60 (55%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVG-KDKNTVVALREIASGTLS 59
MAR T+EDC++KVDNRF LV LA+ R R L++GA ++ K+K VVALREIA G ++
Sbjct: 1 MARVTIEDCLEKVDNRFALVHLAAKRVRQLNKGAPVLLEERVKNKEIVVALREIAEGKVT 60
>gi|58580771|ref|YP_199787.1| DNA-directed RNA polymerase subunit omega [Xanthomonas oryzae pv.
oryzae KACC10331]
gi|58425365|gb|AAW74402.1| RNA polymerase omega subunit [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 110
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV--GKDKNTVVALREIASGTL 58
MAR TVEDC++ V+NRF LV++AS R R L+ G +P ++ DK TV+ALREIA+ +
Sbjct: 12 MARITVEDCLEVVNNRFELVMMASKRARQLANGVQPLIENAAASDKPTVMALREIAARRI 71
Query: 59 SPDDLEE 65
++E
Sbjct: 72 DNALIDE 78
>gi|301632378|ref|XP_002945263.1| PREDICTED: guanosine-3',5'-bis(diphosphate)
3'-pyrophosphohydrolase-like [Xenopus (Silurana)
tropicalis]
Length = 757
Score = 88.8 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIAS 55
MAR TVEDC+ ++ NRF LVL ++R R LSQG P ++ K V ALREIA
Sbjct: 1 MARITVEDCLQQIPNRFQLVLAXTYRARMLSQGHAPKIESRN-KPAVTALREIAQ 54
>gi|120553569|ref|YP_957920.1| DNA-directed RNA polymerase, omega subunit [Marinobacter
aquaeolei VT8]
gi|166230329|sp|A1TYB4|RPOZ_MARAV RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|120323418|gb|ABM17733.1| DNA-directed RNA polymerase subunit omega [Marinobacter aquaeolei
VT8]
Length = 70
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 37/67 (55%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQ-GAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ VDNRF LV+LA+ R R ++ GA+P V DK TV+ALREIA G ++
Sbjct: 1 MARVTVEDCLENVDNRFQLVMLATKRARQIATKGAEPMVAEENDKPTVIALREIAEGKVT 60
Query: 60 PDDLEED 66
D L E+
Sbjct: 61 RDLLLEE 67
>gi|298528398|ref|ZP_07015802.1| DNA-directed RNA polymerase, omega subunit [Desulfonatronospira
thiodismutans ASO3-1]
gi|298512050|gb|EFI35952.1| DNA-directed RNA polymerase, omega subunit [Desulfonatronospira
thiodismutans ASO3-1]
Length = 71
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 30/61 (49%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++KV+NRFLLV ++ R + +G KP V+ K+ V +LREIA+G + P
Sbjct: 1 MARITVEDCLEKVNNRFLLVQMSVRRIQQYREGYKPLVESKN-KDVVTSLREIAAGKVIP 59
Query: 61 D 61
Sbjct: 60 S 60
>gi|254491533|ref|ZP_05104712.1| DNA-directed RNA polymerase, omega subunit [Methylophaga
thiooxidans DMS010]
gi|224463011|gb|EEF79281.1| DNA-directed RNA polymerase, omega subunit [Methylophaga
thiooxydans DMS010]
Length = 86
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 53/85 (62%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MARTTVEDC++ V+NRF LVL+AS R R ++ G V++ DK TV+ALREIA+G + P
Sbjct: 1 MARTTVEDCLENVENRFQLVLVASKRAREIAMGDDAMVEIDNDKPTVLALREIAAGLVGP 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTE 85
+ L + + + E + E
Sbjct: 61 EILTKTSARQHAEESIVSEEELQNE 85
>gi|104784342|ref|YP_610840.1| DNA-directed RNA polymerase subunit omega [Pseudomonas
entomophila L48]
gi|122985711|sp|Q1I2S9|RPOZ_PSEE4 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|95113329|emb|CAK18057.1| DNA-directed RNA polymerase, omega subunit [Pseudomonas
entomophila L48]
Length = 87
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 36/69 (52%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ VDNRF LV+L++ R R L+ G +P V DK TVVALREIA G ++
Sbjct: 1 MARVTVEDCLEHVDNRFELVMLSTKRARQLATGGKEPRVAWENDKPTVVALREIAEGIVT 60
Query: 60 PDDLEEDFI 68
P+ + + I
Sbjct: 61 PEFIAAEEI 69
>gi|329897894|ref|ZP_08272244.1| DNA-directed RNA polymerase omega subunit [gamma proteobacterium
IMCC3088]
gi|328921020|gb|EGG28439.1| DNA-directed RNA polymerase omega subunit [gamma proteobacterium
IMCC3088]
Length = 85
Score = 88.0 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ VDNRF LV++A+ R R ++ G P V DK TV+ALREIA G +S
Sbjct: 1 MARVTVEDCLENVDNRFELVMVATKRARQIATGGKDPLVAEESDKPTVIALREIADGLVS 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPT 84
L ++ Q+ E + + T
Sbjct: 61 AATLSQEE----QRQAEDELAEVMT 81
>gi|42523074|ref|NP_968454.1| putative DNA-directed RNA polymerase, omega subunit [Bdellovibrio
bacteriovorus HD100]
gi|81617609|sp|Q6MMQ7|RPOZ_BDEBA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|39575279|emb|CAE79447.1| putative DNA-directed RNA polymerase, omega subunit [Bdellovibrio
bacteriovorus HD100]
Length = 79
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 30/62 (48%), Positives = 41/62 (66%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++KV NRF LVL+ + R + L +GA+ TV +K V +LRE+A G +
Sbjct: 1 MARVTVEDCLEKVPNRFALVLMVAKRAKQLLKGAEATVSTRSNKYIVSSLREVAMGNVGY 60
Query: 61 DD 62
D
Sbjct: 61 QD 62
>gi|28867314|ref|NP_789933.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
pv. tomato str. DC3000]
gi|237797790|ref|ZP_04586251.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
pv. oryzae str. 1_6]
gi|257481753|ref|ZP_05635794.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
pv. tabaci ATCC 11528]
gi|289625449|ref|ZP_06458403.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
pv. aesculi str. NCPPB3681]
gi|289646375|ref|ZP_06477718.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
pv. aesculi str. 2250]
gi|298484818|ref|ZP_07002918.1| DNA-directed RNA polymerase omega subunit [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
gi|301382584|ref|ZP_07231002.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
pv. tomato Max13]
gi|302063049|ref|ZP_07254590.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
pv. tomato K40]
gi|302133603|ref|ZP_07259593.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
pv. tomato NCPPB 1108]
gi|32171598|sp|Q88BE3|RPOZ_PSESM RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|115305597|sp|Q48Q16|RPOZ_PSE14 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|28850548|gb|AAO53628.1| DNA-directed RNA polymerase, omega subunit [Pseudomonas syringae
pv. tomato str. DC3000]
gi|298160672|gb|EFI01693.1| DNA-directed RNA polymerase omega subunit [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
gi|320322258|gb|EFW78354.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
pv. glycinea str. B076]
gi|320331907|gb|EFW87845.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
pv. glycinea str. race 4]
gi|330866524|gb|EGH01233.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
pv. aesculi str. 0893_23]
gi|330873183|gb|EGH07332.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
pv. glycinea str. race 4]
gi|330876509|gb|EGH10658.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
pv. morsprunorum str. M302280PT]
gi|330964249|gb|EGH64509.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
pv. actinidiae str. M302091]
gi|330986872|gb|EGH84975.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
pv. lachrymans str. M301315]
gi|331009387|gb|EGH89443.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
pv. tabaci ATCC 11528]
gi|331018565|gb|EGH98621.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
pv. lachrymans str. M302278PT]
gi|331020640|gb|EGI00697.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
pv. oryzae str. 1_6]
Length = 87
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ VDNRF LV+L++ R R L+ G +P + DK TV+ALREIA+G +
Sbjct: 1 MARVTVEDCLEHVDNRFELVMLSTKRARQLATGGKEPKLAWENDKPTVMALREIAAGLMD 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPT 84
+ E I + E +S
Sbjct: 61 YAVIAEAEIVEDEPLFAAFEDESNE 85
>gi|117923568|ref|YP_864185.1| DNA-directed RNA polymerase subunit omega [Magnetococcus sp.
MC-1]
gi|166230328|sp|A0L486|RPOZ_MAGSM RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|117607324|gb|ABK42779.1| DNA-directed RNA polymerase subunit omega [Magnetococcus sp.
MC-1]
Length = 121
Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 39/64 (60%), Positives = 48/64 (75%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TV+DC+ V NRF LV+LA+ R R L++GA+P V V +DKNTVVALREIA L+
Sbjct: 1 MARVTVDDCVQHVSNRFELVILAAKRARQLAKGAEPEVSVDRDKNTVVALREIAESKLNM 60
Query: 61 DDLE 64
DDL
Sbjct: 61 DDLR 64
>gi|30250187|ref|NP_842257.1| RNA polymerase omega subunit [Nitrosomonas europaea ATCC 19718]
gi|41688665|sp|Q82SQ2|RPOZ_NITEU RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|30180982|emb|CAD86167.1| RNA polymerase omega subunit [Nitrosomonas europaea ATCC 19718]
Length = 67
Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++ + NRF + L A+ R R +S G+ P +D +DK V+ALRE+A
Sbjct: 1 MARITVEDCLEVIPNRFDMTLAATVRARQVSVGSTPMIDSERDKPIVIALRELAQKKYGE 60
Query: 61 DDL 63
+ L
Sbjct: 61 EIL 63
>gi|220905423|ref|YP_002480735.1| DNA-directed RNA polymerase subunit omega [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|254809270|sp|B8J412|RPOZ_DESDA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|219869722|gb|ACL50057.1| DNA-directed RNA polymerase, omega subunit [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
Length = 78
Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 33/62 (53%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC ++VDNRFLLV +A R +G +P V+ K V ALREIA+G + P
Sbjct: 1 MARITVEDCQERVDNRFLLVQMAIKRVHQYREGYEPLVESRN-KEVVTALREIAAGKVLP 59
Query: 61 DD 62
DD
Sbjct: 60 DD 61
>gi|323143400|ref|ZP_08078085.1| DNA-directed RNA polymerase, omega subunit [Succinatimonas hippei
YIT 12066]
gi|322416805|gb|EFY07454.1| DNA-directed RNA polymerase, omega subunit [Succinatimonas hippei
YIT 12066]
Length = 95
Score = 87.2 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 35/67 (52%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHL-SQGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED + +V NRF LVLLA+ R R + + G+KP VD DK TV+ALREI G +S
Sbjct: 1 MARVTVEDAVARVGNRFDLVLLAARRARQISNNGSKPLVDEENDKPTVIALREIEEGLIS 60
Query: 60 PDDLEED 66
+ L++
Sbjct: 61 EEFLDKQ 67
>gi|66043480|ref|YP_233321.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
pv. syringae B728a]
gi|289672866|ref|ZP_06493756.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
pv. syringae FF5]
gi|302189238|ref|ZP_07265911.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
pv. syringae 642]
gi|75503911|sp|Q4ZZY9|RPOZ_PSEU2 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|63254187|gb|AAY35283.1| RNA polymerase, omega subunit [Pseudomonas syringae pv. syringae
B728a]
gi|330946288|gb|EGH47442.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
pv. pisi str. 1704B]
gi|330946492|gb|EGH47529.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
pv. pisi str. 1704B]
gi|330952130|gb|EGH52390.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
Cit 7]
gi|330957286|gb|EGH57546.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
pv. maculicola str. ES4326]
Length = 87
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ VDNRF LV+L++ R R L+ G +P + DK TV+ALREIA+G +
Sbjct: 1 MARVTVEDCLEHVDNRFELVMLSTKRARQLATGGKEPKLAWENDKPTVMALREIAAGVMD 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPT 84
+ E I + E +S
Sbjct: 61 YSVIAEAEIVEDEPLFAAFEDESNE 85
>gi|34581485|ref|ZP_00142965.1| DNA-directed RNA polymerase omega chain [Rickettsia sibirica 246]
gi|28262870|gb|EAA26374.1| DNA-directed RNA polymerase omega chain [Rickettsia sibirica 246]
Length = 127
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV--DVGKDKNTVVALREIASGTL 58
MAR T EDC + +RF LV+LA+ + L+ + +DK V+ALR IA+G +
Sbjct: 1 MARITAEDCNKIIPDRFRLVVLATRYAKLLNYKVETNQIKKEKRDKPPVIALRRIAAGKV 60
Query: 59 SPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEG 105
S LE+D I+SL+ I EP + S+ K E L + E
Sbjct: 61 SVAQLEQDLINSLRTRTMI-EPLVNQDESEAVEEKFEYLPEVYIGED 106
>gi|317486336|ref|ZP_07945166.1| DNA-directed RNA polymerase [Bilophila wadsworthia 3_1_6]
gi|316922406|gb|EFV43662.1| DNA-directed RNA polymerase [Bilophila wadsworthia 3_1_6]
Length = 78
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC ++V+NRFLLV +A R R +G +P V+ K V ALREIA+G + P
Sbjct: 1 MARITVEDCQERVENRFLLVQMAIKRVRQYREGYEPLVESRN-KEAVTALREIAAGKIFP 59
Query: 61 DDLEEDFIHSLQKHVEIDE 79
+D+ + + + + ++D+
Sbjct: 60 EDMSQYRMPAGETQPDMDD 78
>gi|88861111|ref|ZP_01135745.1| DNA-directed RNA polymerase omega chain [Pseudoalteromonas
tunicata D2]
gi|88816833|gb|EAR26654.1| DNA-directed RNA polymerase omega chain [Pseudoalteromonas
tunicata D2]
Length = 91
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAK-PTVDVGKDKNTVVALREIASGTLS 59
MAR TVED ++K+ NRF L+L+A+ R R ++ G K P V+ G DK TV+ALREI +G ++
Sbjct: 1 MARVTVEDAVEKIGNRFDLILVAARRARQIAVGGKTPMVERGSDKPTVIALREIEAGFVN 60
Query: 60 PDDLE 64
+ ++
Sbjct: 61 NESMD 65
>gi|212711588|ref|ZP_03319716.1| hypothetical protein PROVALCAL_02663 [Providencia alcalifaciens
DSM 30120]
gi|212685690|gb|EEB45218.1| hypothetical protein PROVALCAL_02663 [Providencia alcalifaciens
DSM 30120]
Length = 91
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R L G P V DK+TV+ALRE+ G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQLQTGGKDPLVPEENDKHTVIALREVEEGLIN 60
Query: 60 PDDLE 64
L+
Sbjct: 61 GHILD 65
>gi|183597039|ref|ZP_02958532.1| hypothetical protein PROSTU_00274 [Providencia stuartii ATCC
25827]
gi|268592263|ref|ZP_06126484.1| DNA-directed RNA polymerase, omega subunit [Providencia rettgeri
DSM 1131]
gi|188023698|gb|EDU61738.1| hypothetical protein PROSTU_00274 [Providencia stuartii ATCC
25827]
gi|291312040|gb|EFE52493.1| DNA-directed RNA polymerase, omega subunit [Providencia rettgeri
DSM 1131]
Length = 91
Score = 86.8 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R L G P V DK TV+ALRE+ G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQLQTGGKDPLVPEENDKYTVIALREVEEGLIN 60
Query: 60 PDDLE 64
L+
Sbjct: 61 GHILD 65
>gi|237806955|ref|YP_002891395.1| DNA-directed RNA polymerase subunit omega [Tolumonas auensis DSM
9187]
gi|259494514|sp|C4L810|RPOZ_TOLAT RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|237499216|gb|ACQ91809.1| DNA-directed RNA polymerase, omega subunit [Tolumonas auensis DSM
9187]
Length = 94
Score = 86.8 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 34/60 (56%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED + +V NRF LVL+A+ R R L+ QG +P VD DK TV+ALREI G +S
Sbjct: 1 MARVTVEDAVKQVGNRFDLVLVAARRARQLAVQGKEPLVDEENDKPTVIALREIEEGLIS 60
>gi|238021161|ref|ZP_04601587.1| hypothetical protein GCWU000324_01059 [Kingella oralis ATCC
51147]
gi|237868141|gb|EEP69147.1| hypothetical protein GCWU000324_01059 [Kingella oralis ATCC
51147]
Length = 69
Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV-DVGKDKNTVVALREIASGTLS 59
MAR TVE+CI+K+ N F L L A+ R R L G P V D+ DK TV ALREIA+G ++
Sbjct: 1 MARITVEECIEKIPNHFDLTLAAARRARQLENGTTPLVEDIRHDKPTVTALREIAAGQVT 60
Query: 60 PDDL 63
+++
Sbjct: 61 SEEM 64
>gi|114776356|ref|ZP_01451401.1| DNA-directed RNA polymerase omega subunit [Mariprofundus
ferrooxydans PV-1]
gi|114553186|gb|EAU55584.1| DNA-directed RNA polymerase omega subunit [Mariprofundus
ferrooxydans PV-1]
Length = 87
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDCI NRF +VLLA+ R R + G ++ DK +V ALRE+ G +S
Sbjct: 1 MARVTVEDCISYYPNRFEMVLLAARRARQIQVGMPLMMETEGDKPSVSALREMGEGFVSW 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSP 83
+ L E L++ + D
Sbjct: 61 EVLFEQD-DQLRRRQQAAYNDEE 82
>gi|26991977|ref|NP_747402.1| DNA-directed RNA polymerase subunit omega [Pseudomonas putida
KT2440]
gi|148550410|ref|YP_001270512.1| DNA-directed RNA polymerase subunit omega [Pseudomonas putida F1]
gi|167036335|ref|YP_001671566.1| DNA-directed RNA polymerase subunit omega [Pseudomonas putida
GB-1]
gi|325275160|ref|ZP_08141131.1| DNA-directed RNA polymerase subunit omega [Pseudomonas sp.
TJI-51]
gi|32171599|sp|Q88C82|RPOZ_PSEPK RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166230347|sp|A5WB18|RPOZ_PSEP1 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|189043994|sp|B0KQA1|RPOZ_PSEPG RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|24987108|gb|AAN70866.1|AE016731_1 DNA-directed RNA polymerase, omega subunit [Pseudomonas putida
KT2440]
gi|148514468|gb|ABQ81328.1| DNA-directed RNA polymerase, omega subunit [Pseudomonas putida
F1]
gi|166862823|gb|ABZ01231.1| DNA-directed RNA polymerase, omega subunit [Pseudomonas putida
GB-1]
gi|313501275|gb|ADR62641.1| RpoZ [Pseudomonas putida BIRD-1]
gi|324099707|gb|EGB97582.1| DNA-directed RNA polymerase subunit omega [Pseudomonas sp.
TJI-51]
Length = 87
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/69 (50%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ VDNRF LV+L++ R R L+ G +P V DK TVVALREIA G ++
Sbjct: 1 MARVTVEDCLEHVDNRFELVMLSTKRARQLATGGKEPRVAWENDKPTVVALREIAEGIVT 60
Query: 60 PDDLEEDFI 68
+ + + I
Sbjct: 61 NEFIAAEEI 69
>gi|307128797|ref|YP_003880813.1| RNA polymerase, omega subunit [Dickeya dadantii 3937]
gi|306526326|gb|ADM96256.1| RNA polymerase, omega subunit [Dickeya dadantii 3937]
Length = 91
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R + G +P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQIQVGGKEPLVPEENDKYTVIALREIEEGLIN 60
Query: 60 PDDLE 64
L+
Sbjct: 61 GQILD 65
>gi|157828740|ref|YP_001494982.1| DNA-directed RNA polymerase subunit omega [Rickettsia rickettsii
str. 'Sheila Smith']
gi|165933468|ref|YP_001650257.1| DNA-directed RNA polymerase subunit omega [Rickettsia rickettsii
str. Iowa]
gi|166230355|sp|A8GSU9|RPOZ_RICRS RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|189043995|sp|B0BYC5|RPOZ_RICRO RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|157801221|gb|ABV76474.1| DNA-directed RNA polymerase subunit omega [Rickettsia rickettsii
str. 'Sheila Smith']
gi|165908555|gb|ABY72851.1| DNA-directed RNA polymerase omega chain [Rickettsia rickettsii str.
Iowa]
Length = 127
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKP-TVDVGK-DKNTVVALREIASGTL 58
MAR T EDC + +RF LV+LA+ + L+ + + K DK V+ALR IA+G +
Sbjct: 1 MARITAEDCNKIIPDRFRLVVLATRYAKLLNYKVETNHIKKEKLDKPPVIALRRIAAGKV 60
Query: 59 SPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEG 105
S LE+D I+SL+ I EP + S+ K E L + E
Sbjct: 61 SVAQLEQDLINSLRTRTMI-EPLVNQDESEAVEEKFEYLPEVYIGED 106
>gi|317494704|ref|ZP_07953116.1| RNA polymerase Rpb6 [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316917306|gb|EFV38653.1| RNA polymerase Rpb6 [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 91
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R + G P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQSGGKDPLVPEENDKYTVIALREIEEGLIN 60
Query: 60 PDDLE 64
L+
Sbjct: 61 NQILD 65
>gi|54307411|ref|YP_128431.1| DNA-directed RNA polymerase subunit omega [Photobacterium
profundum SS9]
gi|81615708|sp|Q6LVP6|RPOZ_PHOPR RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|46911831|emb|CAG18629.1| putative DNA-directed RNA polymerase, omega subunit
[Photobacterium profundum SS9]
Length = 94
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D +DK+ NRF L+ +AS R R L G P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVDKIGNRFDLIQIASRRARQLQTGGKDPLVPEENDKYTVIALREIEEGLIT 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSD 88
D L+ LQ+ + D
Sbjct: 61 KDILDARERQELQEQEAAELAAVSAIAGD 89
>gi|170719359|ref|YP_001747047.1| DNA-directed RNA polymerase subunit omega [Pseudomonas putida
W619]
gi|226703162|sp|B1J4N3|RPOZ_PSEPW RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|169757362|gb|ACA70678.1| DNA-directed RNA polymerase, omega subunit [Pseudomonas putida
W619]
Length = 87
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/69 (50%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ VDNRF LV+L++ R R L+ G +P V DK TVVALREIA G ++
Sbjct: 1 MARVTVEDCLEHVDNRFELVMLSTKRARQLATGGKEPRVAWENDKPTVVALREIAEGIVT 60
Query: 60 PDDLEEDFI 68
+ + + I
Sbjct: 61 NEFIAAEEI 69
>gi|15642703|ref|NP_232336.1| DNA-directed RNA polymerase subunit omega [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121586602|ref|ZP_01676387.1| DNA-directed RNA polymerase, omega subunit [Vibrio cholerae
2740-80]
gi|121726705|ref|ZP_01679930.1| DNA-directed RNA polymerase, omega subunit [Vibrio cholerae V52]
gi|147673462|ref|YP_001218197.1| DNA-directed RNA polymerase subunit omega [Vibrio cholerae O395]
gi|153212547|ref|ZP_01948294.1| DNA-directed RNA polymerase, omega subunit [Vibrio cholerae 1587]
gi|153802186|ref|ZP_01956772.1| DNA-directed RNA polymerase, omega subunit [Vibrio cholerae
MZO-3]
gi|153817417|ref|ZP_01970084.1| DNA-directed RNA polymerase, omega subunit [Vibrio cholerae NCTC
8457]
gi|153821252|ref|ZP_01973919.1| DNA-directed RNA polymerase, omega subunit [Vibrio cholerae B33]
gi|153825512|ref|ZP_01978179.1| DNA-directed RNA polymerase, omega subunit [Vibrio cholerae
MZO-2]
gi|153828369|ref|ZP_01981036.1| DNA-directed RNA polymerase, omega subunit [Vibrio cholerae
623-39]
gi|227082823|ref|YP_002811374.1| DNA-directed RNA polymerase, omega subunit [Vibrio cholerae
M66-2]
gi|229507243|ref|ZP_04396748.1| DNA-directed RNA polymerase omega subunit [Vibrio cholerae BX
330286]
gi|229509836|ref|ZP_04399317.1| DNA-directed RNA polymerase omega subunit [Vibrio cholerae B33]
gi|229513630|ref|ZP_04403094.1| DNA-directed RNA polymerase omega subunit [Vibrio cholerae TMA
21]
gi|229516958|ref|ZP_04406404.1| DNA-directed RNA polymerase omega subunit [Vibrio cholerae RC9]
gi|229521775|ref|ZP_04411193.1| DNA-directed RNA polymerase omega subunit [Vibrio cholerae TM
11079-80]
gi|229524687|ref|ZP_04414092.1| DNA-directed RNA polymerase omega subunit [Vibrio cholerae bv.
albensis VL426]
gi|229527366|ref|ZP_04416758.1| DNA-directed RNA polymerase omega subunit [Vibrio cholerae
12129(1)]
gi|229606749|ref|YP_002877397.1| DNA-directed RNA polymerase subunit omega [Vibrio cholerae
MJ-1236]
gi|254225432|ref|ZP_04919043.1| DNA-directed RNA polymerase, omega subunit [Vibrio cholerae V51]
gi|254285898|ref|ZP_04960860.1| DNA-directed RNA polymerase, omega subunit [Vibrio cholerae
AM-19226]
gi|254851246|ref|ZP_05240596.1| DNA-directed RNA polymerase [Vibrio cholerae MO10]
gi|255744333|ref|ZP_05418285.1| DNA-directed RNA polymerase omega subunit [Vibrio cholera CIRS
101]
gi|258620425|ref|ZP_05715463.1| DNA-directed RNA polymerase subunit omega [Vibrio mimicus VM573]
gi|258626030|ref|ZP_05720886.1| DNA-directed RNA polymerase subunit omega [Vibrio mimicus VM603]
gi|261211271|ref|ZP_05925560.1| DNA-directed RNA polymerase omega subunit [Vibrio sp. RC341]
gi|262158557|ref|ZP_06029672.1| DNA-directed RNA polymerase omega subunit [Vibrio cholerae INDRE
91/1]
gi|262166714|ref|ZP_06034451.1| DNA-directed RNA polymerase omega subunit [Vibrio mimicus VM223]
gi|262170049|ref|ZP_06037738.1| DNA-directed RNA polymerase omega subunit [Vibrio cholerae RC27]
gi|262170364|ref|ZP_06038042.1| DNA-directed RNA polymerase omega subunit [Vibrio mimicus MB-451]
gi|262190094|ref|ZP_06048385.1| DNA-directed RNA polymerase omega subunit [Vibrio cholerae CT
5369-93]
gi|262401989|ref|ZP_06078554.1| DNA-directed RNA polymerase omega subunit [Vibrio sp. RC586]
gi|298500476|ref|ZP_07010280.1| DNA-directed RNA polymerase [Vibrio cholerae MAK 757]
gi|13959486|sp|Q9KNM3|RPOZ_VIBCH RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|172047530|sp|A5F4S8|RPOZ_VIBC3 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|254809455|sp|C3LSD6|RPOZ_VIBCM RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|9657305|gb|AAF95849.1| DNA-directed RNA polymerase, omega subunit [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121549161|gb|EAX59194.1| DNA-directed RNA polymerase, omega subunit [Vibrio cholerae
2740-80]
gi|121630866|gb|EAX63248.1| DNA-directed RNA polymerase, omega subunit [Vibrio cholerae V52]
gi|124116418|gb|EAY35238.1| DNA-directed RNA polymerase, omega subunit [Vibrio cholerae 1587]
gi|124122260|gb|EAY41003.1| DNA-directed RNA polymerase, omega subunit [Vibrio cholerae
MZO-3]
gi|125622066|gb|EAZ50389.1| DNA-directed RNA polymerase, omega subunit [Vibrio cholerae V51]
gi|126512003|gb|EAZ74597.1| DNA-directed RNA polymerase, omega subunit [Vibrio cholerae NCTC
8457]
gi|126521184|gb|EAZ78407.1| DNA-directed RNA polymerase, omega subunit [Vibrio cholerae B33]
gi|146315345|gb|ABQ19884.1| DNA-directed RNA polymerase, omega subunit [Vibrio cholerae O395]
gi|148876199|gb|EDL74334.1| DNA-directed RNA polymerase, omega subunit [Vibrio cholerae
623-39]
gi|149740797|gb|EDM54888.1| DNA-directed RNA polymerase, omega subunit [Vibrio cholerae
MZO-2]
gi|150424080|gb|EDN16019.1| DNA-directed RNA polymerase, omega subunit [Vibrio cholerae
AM-19226]
gi|227010711|gb|ACP06923.1| DNA-directed RNA polymerase, omega subunit [Vibrio cholerae
M66-2]
gi|227014595|gb|ACP10805.1| DNA-directed RNA polymerase, omega subunit [Vibrio cholerae O395]
gi|229334998|gb|EEO00483.1| DNA-directed RNA polymerase omega subunit [Vibrio cholerae
12129(1)]
gi|229338268|gb|EEO03285.1| DNA-directed RNA polymerase omega subunit [Vibrio cholerae bv.
albensis VL426]
gi|229341369|gb|EEO06373.1| DNA-directed RNA polymerase omega subunit [Vibrio cholerae TM
11079-80]
gi|229346021|gb|EEO10993.1| DNA-directed RNA polymerase omega subunit [Vibrio cholerae RC9]
gi|229349507|gb|EEO14463.1| DNA-directed RNA polymerase omega subunit [Vibrio cholerae TMA
21]
gi|229353310|gb|EEO18249.1| DNA-directed RNA polymerase omega subunit [Vibrio cholerae B33]
gi|229354748|gb|EEO19669.1| DNA-directed RNA polymerase omega subunit [Vibrio cholerae BX
330286]
gi|229369404|gb|ACQ59827.1| DNA-directed RNA polymerase omega subunit [Vibrio cholerae
MJ-1236]
gi|254846951|gb|EET25365.1| DNA-directed RNA polymerase [Vibrio cholerae MO10]
gi|255737858|gb|EET93251.1| DNA-directed RNA polymerase omega subunit [Vibrio cholera CIRS
101]
gi|258581681|gb|EEW06574.1| DNA-directed RNA polymerase subunit omega [Vibrio mimicus VM603]
gi|258587304|gb|EEW12015.1| DNA-directed RNA polymerase subunit omega [Vibrio mimicus VM573]
gi|260839772|gb|EEX66383.1| DNA-directed RNA polymerase omega subunit [Vibrio sp. RC341]
gi|261891440|gb|EEY37426.1| DNA-directed RNA polymerase omega subunit [Vibrio mimicus MB-451]
gi|262021457|gb|EEY40169.1| DNA-directed RNA polymerase omega subunit [Vibrio cholerae RC27]
gi|262026430|gb|EEY45098.1| DNA-directed RNA polymerase omega subunit [Vibrio mimicus VM223]
gi|262029718|gb|EEY48367.1| DNA-directed RNA polymerase omega subunit [Vibrio cholerae INDRE
91/1]
gi|262034024|gb|EEY52473.1| DNA-directed RNA polymerase omega subunit [Vibrio cholerae CT
5369-93]
gi|262351961|gb|EEZ01092.1| DNA-directed RNA polymerase omega subunit [Vibrio sp. RC586]
gi|297540645|gb|EFH76702.1| DNA-directed RNA polymerase [Vibrio cholerae MAK 757]
gi|327485179|gb|AEA79586.1| DNA-directed RNA polymerase omega subunit [Vibrio cholerae
LMA3894-4]
Length = 90
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R + G V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQSGGKDALVPEENDKPTVIALREIEEGLIT 60
Query: 60 PDDLE 64
D L+
Sbjct: 61 KDVLD 65
>gi|116749193|ref|YP_845880.1| DNA-directed RNA polymerase subunit omega [Syntrophobacter
fumaroxidans MPOB]
gi|166230369|sp|A0LJ43|RPOZ_SYNFM RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|116698257|gb|ABK17445.1| DNA-directed RNA polymerase, omega subunit [Syntrophobacter
fumaroxidans MPOB]
Length = 121
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR T+EDC+ +VD+RF LV LA R L GA P +V K V+ALREIA+G ++
Sbjct: 1 MARVTIEDCLKEVDSRFTLVHLAVRRVLQLRGGAPPLTEVRN-KEVVLALREIAAGKVTV 59
Query: 61 DDLEE-DFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNIVTPDK 119
D++ + +L + V + + + L M + + + P +
Sbjct: 60 DNIRRLEEAKALPEPVAVTQKEDVARLELKEIMDEATLYDASMEFDEAQQVVEPDAEPSE 119
Query: 120 R 120
Sbjct: 120 E 120
>gi|28198625|ref|NP_778939.1| DNA-directed RNA polymerase subunit omega [Xylella fastidiosa
Temecula1]
gi|32130002|sp|Q87DG6|RPOZ_XYLFT RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|28056709|gb|AAO28588.1| RNA polymerase omega subunit [Xylella fastidiosa Temecula1]
gi|307579759|gb|ADN63728.1| DNA-directed RNA polymerase subunit omega [Xylella fastidiosa
subsp. fastidiosa GB514]
Length = 99
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK--DKNTVVALREIASGTL 58
MAR TVEDC++ V+NRF LV++AS R R L+ G P ++ DK TV+ALREIA+ +
Sbjct: 1 MARITVEDCLEVVNNRFELVMMASKRARQLANGVPPLIENTNSEDKPTVMALREIAARKI 60
Query: 59 SPDDLEE 65
+ ++E
Sbjct: 61 NSKMIDE 67
>gi|301062569|ref|ZP_07203207.1| DNA-directed RNA polymerase, omega subunit [delta proteobacterium
NaphS2]
gi|300443334|gb|EFK07461.1| DNA-directed RNA polymerase, omega subunit [delta proteobacterium
NaphS2]
Length = 105
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 6/106 (5%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+D+VDNRF L+ +A++R R L +GA+P V V K+++TVVALREIA+G + P
Sbjct: 1 MARITVEDCLDRVDNRFGLIHVAANRVRQLRKGAEPLV-VCKNRDTVVALREIAAGKVFP 59
Query: 61 DDLEEDFIHS-----LQKHVEIDEPDSPTENSDFSWHKPEALSFGQ 101
+++E S L +EP + N + + +
Sbjct: 60 KEIDEKKALSGDPTDLLLETLSEEPKPESVNQEIEGAEAAPIEKES 105
>gi|238650640|ref|YP_002916492.1| DNA-directed RNA polymerase subunit omega [Rickettsia peacockii
str. Rustic]
gi|259494509|sp|C4K1J3|RPOZ_RICPU RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|238624738|gb|ACR47444.1| DNA-directed RNA polymerase subunit omega [Rickettsia peacockii
str. Rustic]
Length = 127
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV--DVGKDKNTVVALREIASGTL 58
MAR T EDC + +RF LV+LA+ + L+ + +DK V+ALR IA+G +
Sbjct: 1 MARITAEDCNKIIPDRFRLVVLATRYAKLLNYKVETNQIKKEKRDKPPVIALRRIAAGKV 60
Query: 59 SPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEG 105
S LE+D I+SL+ I EP + S+ K E LS + E
Sbjct: 61 SVAQLEQDLINSLRTRTMI-EPLVNQDESEAVEEKFEYLSEVYIGED 106
>gi|303246670|ref|ZP_07332948.1| DNA-directed RNA polymerase, omega subunit [Desulfovibrio
fructosovorans JJ]
gi|302492010|gb|EFL51888.1| DNA-directed RNA polymerase, omega subunit [Desulfovibrio
fructosovorans JJ]
Length = 74
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++K++NRFL+V +A R +G P V+ K V ALREIA+G + P
Sbjct: 1 MARITVEDCLEKINNRFLIVQMAIKRVHQYREGYDPLVECKN-KEIVTALREIAAGEVLP 59
Query: 61 DD 62
+
Sbjct: 60 AE 61
>gi|146309757|ref|YP_001174831.1| DNA-directed RNA polymerase, omega subunit [Enterobacter sp. 638]
gi|166991540|sp|A4W500|RPOZ_ENT38 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|145316633|gb|ABP58780.1| DNA-directed RNA polymerase subunit omega [Enterobacter sp. 638]
Length = 91
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R + G P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQSGGKDPLVPEENDKTTVIALREIEEGLIT 60
Query: 60 PDDLE 64
L+
Sbjct: 61 NQILD 65
>gi|88797491|ref|ZP_01113080.1| DNA-directed RNA polymerase, omega subunit [Reinekea sp. MED297]
gi|88779663|gb|EAR10849.1| DNA-directed RNA polymerase, omega subunit [Reinekea sp. MED297]
Length = 69
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/66 (54%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHL-SQGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+DKVDNRF L+++AS R R + + GA V+ DK TV+ALREIA G +
Sbjct: 1 MARVTVEDCLDKVDNRFELIMVASKRARQISNDGADTLVEEDNDKPTVIALREIAEGKID 60
Query: 60 PDDLEE 65
LE
Sbjct: 61 ASILEN 66
>gi|251791700|ref|YP_003006421.1| DNA-directed RNA polymerase subunit omega [Dickeya zeae Ech1591]
gi|271502620|ref|YP_003335646.1| DNA-directed RNA polymerase subunit omega [Dickeya dadantii
Ech586]
gi|247540321|gb|ACT08942.1| DNA-directed RNA polymerase, omega subunit [Dickeya zeae Ech1591]
gi|270346175|gb|ACZ78940.1| DNA-directed RNA polymerase, omega subunit [Dickeya dadantii
Ech586]
Length = 91
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R + G P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQIQVGGKDPLVPEENDKYTVIALREIEEGLIN 60
Query: 60 PDDLE 64
L+
Sbjct: 61 GQILD 65
>gi|15892805|ref|NP_360519.1| DNA-directed RNA polymerase subunit omega [Rickettsia conorii str.
Malish 7]
gi|229586915|ref|YP_002845416.1| DNA-directed RNA polymerase subunit omega [Rickettsia africae
ESF-5]
gi|20140112|sp|Q92H89|RPOZ_RICCN RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|259494508|sp|C3PP13|RPOZ_RICAE RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|15619987|gb|AAL03420.1| DNA-directed RNA polymerase omega chain [Rickettsia conorii str.
Malish 7]
gi|228021965|gb|ACP53673.1| DNA-directed RNA polymerase omega chain [Rickettsia africae ESF-5]
Length = 127
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV--DVGKDKNTVVALREIASGTL 58
MAR T EDC + +RF LV+LA+ + L+ + +DK V+ALR IA+G +
Sbjct: 1 MARITAEDCNKIIPDRFRLVVLATRYAKLLNYKVETNQIKKEKRDKPPVIALRRIAAGKV 60
Query: 59 SPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEG 105
S LE+D I+SL+ I EP + S+ K E L + E
Sbjct: 61 SVAQLEQDLINSLRTRTMI-EPLVNQDESEAVEEKFEYLPEVYIGED 106
>gi|323698072|ref|ZP_08109984.1| DNA-directed RNA polymerase, omega subunit [Desulfovibrio sp.
ND132]
gi|323458004|gb|EGB13869.1| DNA-directed RNA polymerase, omega subunit [Desulfovibrio
desulfuricans ND132]
Length = 75
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ KV NRFL+ +A R + +G +P +D K V ALREIA+G + P
Sbjct: 1 MARITVEDCLAKVSNRFLITQMAIKRVKQYREGYEPLIDSKN-KEVVNALREIAAGKVIP 59
Query: 61 DDLEEDFIHSLQK 73
D + +HS +
Sbjct: 60 DTTSDLHLHSSET 72
>gi|283851826|ref|ZP_06369103.1| DNA-directed RNA polymerase, omega subunit [Desulfovibrio sp.
FW1012B]
gi|283572742|gb|EFC20725.1| DNA-directed RNA polymerase, omega subunit [Desulfovibrio sp.
FW1012B]
Length = 74
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/62 (46%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++K++NRFL+V +A R +G +P V+ K V ALREIA+G + P
Sbjct: 1 MARITVEDCLEKINNRFLIVQMAIKRVHQYREGYEPLVECKN-KEVVTALREIAAGEVLP 59
Query: 61 DD 62
+
Sbjct: 60 SE 61
>gi|242280053|ref|YP_002992182.1| DNA-directed RNA polymerase, omega subunit [Desulfovibrio
salexigens DSM 2638]
gi|259494386|sp|C6BYN6|RPOZ_DESAD RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|242122947|gb|ACS80643.1| DNA-directed RNA polymerase, omega subunit [Desulfovibrio
salexigens DSM 2638]
Length = 73
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+ +V NRFL+V +A R + +G P V+ K V ALREIA+ + P
Sbjct: 1 MARITVEDCLAEVGNRFLIVQMAIKRVKQYREGYSPLVESKN-KEIVTALREIAATKVLP 59
Query: 61 D 61
+
Sbjct: 60 E 60
>gi|157825958|ref|YP_001493678.1| DNA-directed RNA polymerase subunit omega [Rickettsia akari str.
Hartford]
gi|166230352|sp|A8GP45|RPOZ_RICAH RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|157799916|gb|ABV75170.1| DNA-directed RNA polymerase subunit omega [Rickettsia akari str.
Hartford]
Length = 127
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV--DVGKDKNTVVALREIASGTL 58
MAR T EDC + +RF LV+LA+ + L+ + +DK V+ALR IA+G +
Sbjct: 1 MARITAEDCNKIIPDRFRLVVLATRYAKLLNYKVETNQIKKEKRDKPPVIALRRIAAGKV 60
Query: 59 SPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEG 105
S + LE+D I+SL+ I EP + S+ + E LS ++E
Sbjct: 61 SVEQLEQDLINSLRTKTMI-EPLVNQDESEDIKEEFEYLSEVCITED 106
>gi|254448928|ref|ZP_05062383.1| DNA-directed RNA polymerase, omega subunit [gamma proteobacterium
HTCC5015]
gi|198261465|gb|EDY85755.1| DNA-directed RNA polymerase, omega subunit [gamma proteobacterium
HTCC5015]
Length = 84
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 55/84 (65%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+D++DN F LVL++S R R +++GA+P V+V DK TV+ALREIA G +
Sbjct: 1 MARVTVEDCMDQMDNLFQLVLVSSKRARQIAEGAEPMVEVDGDKPTVLALREIAEGLVDR 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPT 84
L+E L+ + + +S
Sbjct: 61 TILDEKPAQELEIDLSGSDEESAA 84
>gi|152998380|ref|YP_001343215.1| DNA-directed RNA polymerase subunit omega [Marinomonas sp. MWYL1]
gi|189043988|sp|A6W3K1|RPOZ_MARMS RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|150839304|gb|ABR73280.1| DNA-directed RNA polymerase, omega subunit [Marinomonas sp.
MWYL1]
Length = 74
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/67 (49%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAK-PTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ VDNRF LV++AS R R L+ G + V + DK TVVALREIA ++
Sbjct: 1 MARVTVEDCLENVDNRFELVMVASKRARQLATGGEDAKVPLEGDKVTVVALREIAENLIN 60
Query: 60 PDDLEED 66
++++
Sbjct: 61 AKNVDQQ 67
>gi|15604431|ref|NP_220949.1| DNA-directed RNA polymerase subunit omega [Rickettsia prowazekii
str. Madrid E]
gi|6648005|sp|Q9ZCX4|RPOZ_RICPR RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|3861125|emb|CAA15025.1| unknown [Rickettsia prowazekii]
gi|292572200|gb|ADE30115.1| DNA-directed RNA polymerase omega chain [Rickettsia prowazekii
Rp22]
Length = 127
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV--DVGKDKNTVVALREIASGTL 58
MAR T EDC + +RF LV+LA+ + L+ + +DK V++LR IA+G +
Sbjct: 1 MARITAEDCNKIIPDRFRLVVLATRYAKLLNYKVETNQIKKEKRDKPPVISLRRIAAGKV 60
Query: 59 SPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEG 105
S LE+D I+SL+ + I EP + S+ K E L + E
Sbjct: 61 SVPQLEQDLINSLRTRMMI-EPLINQDESEDVEEKFEYLPEVYIGED 106
>gi|46581644|ref|YP_012452.1| DNA-directed RNA polymerase subunit omega [Desulfovibrio vulgaris
str. Hildenborough]
gi|120601197|ref|YP_965597.1| DNA-directed RNA polymerase subunit omega [Desulfovibrio vulgaris
DP4]
gi|81566041|sp|Q725M7|RPOZ_DESVH RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166229420|sp|A1V9Q4|RPOZ_DESVV RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|46451067|gb|AAS97712.1| DNA-directed RNA polymerase, omega subunit [Desulfovibrio
vulgaris str. Hildenborough]
gi|120561426|gb|ABM27170.1| DNA-directed RNA polymerase subunit omega [Desulfovibrio vulgaris
DP4]
gi|311235286|gb|ADP88140.1| DNA-directed RNA polymerase, omega subunit [Desulfovibrio
vulgaris RCH1]
Length = 77
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/63 (52%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC ++DNRFLLV +A R + +G +P VD K V ALREIA+G + P
Sbjct: 1 MARITVEDCQKRIDNRFLLVQMAIKRVQQYREGYEPLVDSKN-KEVVTALREIAAGKVMP 59
Query: 61 DDL 63
+DL
Sbjct: 60 EDL 62
>gi|300725266|ref|YP_003714595.1| RNA polymerase subunit omega [Xenorhabdus nematophila ATCC 19061]
gi|297631812|emb|CBJ92533.1| RNA polymerase, omega subunit [Xenorhabdus nematophila ATCC
19061]
Length = 91
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R L G P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQLQSGGKDPLVPEENDKMTVIALREIEQGLIN 60
Query: 60 PDDLE 64
L+
Sbjct: 61 NKILD 65
>gi|330972209|gb|EGH72275.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
pv. aceris str. M302273PT]
Length = 87
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ VDNRF LV+L++ R R L+ G +P + DK TV+ALREI +G +
Sbjct: 1 MARVTVEDCLEHVDNRFELVMLSTKRARQLATGGKEPKLAWENDKPTVMALREITAGVMD 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPT 84
+ E I + E +S
Sbjct: 61 YSVIAEAEIVEDEPLFAAFEDESNE 85
>gi|269137388|ref|YP_003294088.1| DNA-directed RNA polymerase, subunit omega [Edwardsiella tarda
EIB202]
gi|294638297|ref|ZP_06716550.1| DNA-directed RNA polymerase, omega subunit [Edwardsiella tarda
ATCC 23685]
gi|267983048|gb|ACY82877.1| DNA-directed RNA polymerase, subunit omega [Edwardsiella tarda
EIB202]
gi|291088550|gb|EFE21111.1| DNA-directed RNA polymerase, omega subunit [Edwardsiella tarda
ATCC 23685]
gi|304557489|gb|ADM40153.1| DNA-directed RNA polymerase omega subunit [Edwardsiella tarda
FL6-60]
Length = 91
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R + G +P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQTGGKEPLVPEENDKTTVIALREIEEGLIN 60
Query: 60 PDDLE 64
L+
Sbjct: 61 NQILD 65
>gi|239995989|ref|ZP_04716513.1| DNA-directed RNA polymerase subunit omega [Alteromonas macleodii
ATCC 27126]
Length = 90
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/63 (52%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED +DK+ NRF LVL+A+ R R ++ +G P VDV DK TV ALREI G ++
Sbjct: 1 MARVTVEDAVDKIGNRFDLVLVAARRARQIATEGKDPMVDVQNDKPTVTALREIEEGLVT 60
Query: 60 PDD 62
Sbjct: 61 AAT 63
>gi|50119002|ref|YP_048169.1| DNA-directed RNA polymerase subunit omega [Pectobacterium
atrosepticum SCRI1043]
gi|81646683|sp|Q6DB61|RPOZ_ERWCT RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|49609528|emb|CAG72961.1| DNA-directed RNA polymerase omega chain [Pectobacterium
atrosepticum SCRI1043]
Length = 91
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R L G P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQLQTGGKDPLVPEENDKYTVIALREIEDGLIN 60
Query: 60 PDDLE 64
L+
Sbjct: 61 NQILD 65
>gi|90412682|ref|ZP_01220683.1| DNA-directed RNA polymerase omega subunit [Photobacterium
profundum 3TCK]
gi|90326257|gb|EAS42676.1| DNA-directed RNA polymerase omega subunit [Photobacterium
profundum 3TCK]
Length = 93
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D +DK+ NRF L+ +AS R R L G P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVDKIGNRFDLIQIASRRARQLQTGGKDPLVPEENDKYTVIALREIEEGLIT 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSD 88
D L+ LQ+ + D
Sbjct: 61 KDILDARERQELQEQEAAELAAVSAIAGD 89
>gi|86146549|ref|ZP_01064871.1| DNA-directed RNA polymerase omega subunit [Vibrio sp. MED222]
gi|218708223|ref|YP_002415844.1| DNA-directed RNA polymerase subunit omega [Vibrio splendidus
LGP32]
gi|254809456|sp|B7VHI0|RPOZ_VIBSL RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|85835606|gb|EAQ53742.1| DNA-directed RNA polymerase omega subunit [Vibrio sp. MED222]
gi|218321242|emb|CAV17192.1| DNA-directed RNA polymerase omega chain [Vibrio splendidus LGP32]
Length = 90
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++KV NRF LVL+A+ R R + G V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKVGNRFDLVLIAARRARQMQTGGKDSLVPEENDKPTVIALREIEEGLIT 60
Query: 60 PDDLE 64
D L+
Sbjct: 61 KDVLD 65
>gi|260770801|ref|ZP_05879730.1| DNA-directed RNA polymerase omega subunit [Vibrio furnissii CIP
102972]
gi|260614038|gb|EEX39228.1| DNA-directed RNA polymerase omega subunit [Vibrio furnissii CIP
102972]
gi|315178843|gb|ADT85757.1| DNA-directed RNA polymerase omega subunit [Vibrio furnissii NCTC
11218]
Length = 90
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++KV NRF LVL+A+ R R + G V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKVGNRFDLVLIAARRARQMQTGGKDSLVPEENDKPTVIALREIEEGLIT 60
Query: 60 PDDLE 64
D L+
Sbjct: 61 KDVLD 65
>gi|119475379|ref|ZP_01615732.1| DNA-directed RNA polymerase omega subunit [marine gamma
proteobacterium HTCC2143]
gi|119451582|gb|EAW32815.1| DNA-directed RNA polymerase omega subunit [marine gamma
proteobacterium HTCC2143]
Length = 91
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 10/95 (10%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+DKVDNRF LV++AS R R LS G P V DK TV+ALREIA ++
Sbjct: 1 MARITVEDCLDKVDNRFELVMVASKRARALSTGGVTPLVAEESDKPTVIALREIADSLIT 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKP 94
P ++ + ++P+ + + ++
Sbjct: 61 PAEIMN---------PKEEDPEEMILDMEAVMNQD 86
>gi|261344471|ref|ZP_05972115.1| DNA-directed RNA polymerase, omega subunit [Providencia
rustigianii DSM 4541]
gi|282567378|gb|EFB72913.1| DNA-directed RNA polymerase, omega subunit [Providencia
rustigianii DSM 4541]
Length = 91
Score = 85.3 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R L G P V DK+TV+ALRE+ G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQLQTGGKDPLVPEENDKHTVIALREVEEGLIN 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSDFSW 91
L+ + Q+ E D + ++
Sbjct: 61 GHILD---VRERQEQQEQDAAEMQAVSAIAEG 89
>gi|117618766|ref|YP_854565.1| DNA-directed RNA polymerase subunit omega [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
gi|145297152|ref|YP_001139993.1| DNA-directed RNA polymerase subunit omega [Aeromonas salmonicida
subsp. salmonicida A449]
gi|330827728|ref|YP_004390680.1| DNA-directed RNA polymerase subunit omega [Aeromonas veronii
B565]
gi|166229341|sp|A0KR23|RPOZ_AERHH RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166229342|sp|A4SH73|RPOZ_AERS4 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|117560173|gb|ABK37121.1| DNA-directed RNA polymerase, omega subunit [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
gi|142849924|gb|ABO88245.1| DNA-directed RNA polymerase, omega subunit [Aeromonas salmonicida
subsp. salmonicida A449]
gi|328802864|gb|AEB48063.1| DNA-directed RNA polymerase subunit omega [Aeromonas veronii
B565]
Length = 91
Score = 85.3 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED + +V NRF LVL+A+ R R ++ QG P VD DK TV+ALREI G ++
Sbjct: 1 MARVTVEDAVKQVGNRFDLVLVAARRARQIAVQGKDPLVDEENDKPTVIALREIELGLVN 60
>gi|312882904|ref|ZP_07742636.1| DNA-directed RNA polymerase subunit omega [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309369423|gb|EFP96943.1| DNA-directed RNA polymerase subunit omega [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 90
Score = 85.3 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++KV NRF LVL+A+ R R + G V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKVGNRFDLVLIAARRARQMQTGGKDSLVPEENDKQTVIALREIEEGLIT 60
Query: 60 PDDLE 64
D L+
Sbjct: 61 KDILD 65
>gi|28896934|ref|NP_796539.1| DNA-directed RNA polymerase subunit omega [Vibrio
parahaemolyticus RIMD 2210633]
gi|91224996|ref|ZP_01260255.1| DNA-directed RNA polymerase omega subunit [Vibrio alginolyticus
12G01]
gi|153833936|ref|ZP_01986603.1| DNA-directed RNA polymerase, omega subunit [Vibrio harveyi HY01]
gi|153837886|ref|ZP_01990553.1| DNA-directed RNA polymerase, omega subunit [Vibrio
parahaemolyticus AQ3810]
gi|260365878|ref|ZP_05778372.1| DNA-directed RNA polymerase, omega subunit [Vibrio
parahaemolyticus K5030]
gi|260877835|ref|ZP_05890190.1| DNA-directed RNA polymerase, omega subunit [Vibrio
parahaemolyticus AN-5034]
gi|260895516|ref|ZP_05904012.1| DNA-directed RNA polymerase, omega subunit [Vibrio
parahaemolyticus Peru-466]
gi|260902540|ref|ZP_05910935.1| DNA-directed RNA polymerase, omega subunit [Vibrio
parahaemolyticus AQ4037]
gi|262392637|ref|YP_003284491.1| DNA-directed RNA polymerase omega subunit [Vibrio sp. Ex25]
gi|269959392|ref|ZP_06173775.1| DNA-directed RNA polymerase subunit omega [Vibrio harveyi 1DA3]
gi|269965890|ref|ZP_06179983.1| DNA-directed RNA polymerase subunit omega [Vibrio alginolyticus
40B]
gi|31340401|sp|Q87TB0|RPOZ_VIBPA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|28805142|dbj|BAC58423.1| DNA-directed RNA polymerase, omega subunit [Vibrio
parahaemolyticus RIMD 2210633]
gi|91190242|gb|EAS76512.1| DNA-directed RNA polymerase omega subunit [Vibrio alginolyticus
12G01]
gi|148869774|gb|EDL68751.1| DNA-directed RNA polymerase, omega subunit [Vibrio harveyi HY01]
gi|149748749|gb|EDM59594.1| DNA-directed RNA polymerase, omega subunit [Vibrio
parahaemolyticus AQ3810]
gi|262336231|gb|ACY50026.1| DNA-directed RNA polymerase omega subunit [Vibrio sp. Ex25]
gi|269829443|gb|EEZ83684.1| DNA-directed RNA polymerase subunit omega [Vibrio alginolyticus
40B]
gi|269835829|gb|EEZ89905.1| DNA-directed RNA polymerase subunit omega [Vibrio harveyi 1DA3]
gi|308088475|gb|EFO38170.1| DNA-directed RNA polymerase, omega subunit [Vibrio
parahaemolyticus Peru-466]
gi|308089933|gb|EFO39628.1| DNA-directed RNA polymerase, omega subunit [Vibrio
parahaemolyticus AN-5034]
gi|308109730|gb|EFO47270.1| DNA-directed RNA polymerase, omega subunit [Vibrio
parahaemolyticus AQ4037]
gi|308113457|gb|EFO50997.1| DNA-directed RNA polymerase, omega subunit [Vibrio
parahaemolyticus K5030]
gi|328471710|gb|EGF42587.1| DNA-directed RNA polymerase subunit omega [Vibrio
parahaemolyticus 10329]
Length = 90
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++KV NRF LVL+A+ R R + G V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKVGNRFDLVLIAARRARQMQTGGKDALVPEENDKPTVIALREIEEGLIT 60
Query: 60 PDDLE 64
+ L+
Sbjct: 61 KEVLD 65
>gi|238918014|ref|YP_002931528.1| DNA-directed RNA polymerase, omega subunit, [Edwardsiella
ictaluri 93-146]
gi|259494496|sp|C5B9B3|RPOZ_EDWI9 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|238867582|gb|ACR67293.1| DNA-directed RNA polymerase, omega subunit, putative
[Edwardsiella ictaluri 93-146]
Length = 91
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R + G +P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQTGGKEPLVPEENDKTTVLALREIEEGLIN 60
Query: 60 PDDLE 64
L+
Sbjct: 61 NQILD 65
>gi|332995101|gb|AEF05156.1| DNA-directed RNA polymerase subunit omega [Alteromonas sp. SN2]
Length = 90
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED +DK+ NRF LVL+A+ R R ++ +G P VDV DK TV ALREI G ++
Sbjct: 1 MARVTVEDAVDKIGNRFDLVLVAARRARQIATEGKTPMVDVQNDKPTVTALREIEQGLVT 60
Query: 60 PDDLEEDFIHSLQKHVEIDE 79
LE+D + Q+ E E
Sbjct: 61 ASTLEQDDLRD-QEQQEHAE 79
>gi|291619490|ref|YP_003522232.1| RpoZ [Pantoea ananatis LMG 20103]
gi|304399038|ref|ZP_07380907.1| DNA-directed RNA polymerase, omega subunit [Pantoea sp. aB]
gi|308188672|ref|YP_003932803.1| DNA-directed RNA polymerase omega chain [Pantoea vagans C9-1]
gi|291154520|gb|ADD79104.1| RpoZ [Pantoea ananatis LMG 20103]
gi|304353498|gb|EFM17876.1| DNA-directed RNA polymerase, omega subunit [Pantoea sp. aB]
gi|308059182|gb|ADO11354.1| DNA-directed RNA polymerase omega chain [Pantoea vagans C9-1]
gi|327395798|dbj|BAK13220.1| DNA-directed RNA polymerase omega chain RpoZ [Pantoea ananatis
AJ13355]
Length = 91
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++KV NRF LVL+A+ R R + G P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKVGNRFDLVLVAARRARQMQVGGKDPLVPEENDKPTVIALREIEEGLVT 60
Query: 60 PDDLE 64
L+
Sbjct: 61 NQILD 65
>gi|94676558|ref|YP_588582.1| DNA-directed RNA polymerase, omega subunit [Baumannia
cicadellinicola str. Hc (Homalodisca coagulata)]
gi|123384154|sp|Q1LTY2|RPOZ_BAUCH RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|94219708|gb|ABF13867.1| DNA-directed RNA polymerase, omega subunit [Baumannia
cicadellinicola str. Hc (Homalodisca coagulata)]
Length = 65
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTL 58
MAR TV+D ++K+ NRF LVL+A+ R R + G P V DK+TV+ALREI G +
Sbjct: 1 MARITVQDAVEKIGNRFNLVLIAARRARQIQINGKDPLVPEKNDKSTVIALREIEQGLI 59
>gi|227113298|ref|ZP_03826954.1| DNA-directed RNA polymerase subunit omega [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
gi|227327136|ref|ZP_03831160.1| DNA-directed RNA polymerase subunit omega [Pectobacterium
carotovorum subsp. carotovorum WPP14]
gi|253690570|ref|YP_003019760.1| DNA-directed RNA polymerase, omega subunit [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|261823686|ref|YP_003261792.1| DNA-directed RNA polymerase subunit omega [Pectobacterium
wasabiae WPP163]
gi|259494504|sp|C6DJC5|RPOZ_PECCP RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|251757148|gb|ACT15224.1| DNA-directed RNA polymerase, omega subunit [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|261607699|gb|ACX90185.1| DNA-directed RNA polymerase, omega subunit [Pectobacterium
wasabiae WPP163]
Length = 91
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R + G P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQIQTGGKDPLVPEENDKYTVIALREIEEGLIN 60
Query: 60 PDDLE 64
L+
Sbjct: 61 NQILD 65
>gi|51473759|ref|YP_067516.1| DNA-directed RNA polymerase subunit omega [Rickettsia typhi str.
Wilmington]
gi|81610781|sp|Q68WF8|RPOZ_RICTY RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|51460071|gb|AAU04034.1| RNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str.
Wilmington]
Length = 127
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV--DVGKDKNTVVALREIASGTL 58
MAR T EDC + +RF LV+LA+ + L+ + +DK V++LR IA+G +
Sbjct: 1 MARITAEDCNKIIPDRFRLVVLATRYAKLLNYKVETNQIKKEKRDKPPVISLRRIAAGKV 60
Query: 59 SPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEG 105
S LE+D I+SL+ I EP + S+ K E L + E
Sbjct: 61 SVPQLEQDLINSLRTSSMI-EPLVNQDESEDVEEKFEYLPEVYIGED 106
>gi|94264941|ref|ZP_01288713.1| RNA polymerase, omega subunit [delta proteobacterium MLMS-1]
gi|93454597|gb|EAT04872.1| RNA polymerase, omega subunit [delta proteobacterium MLMS-1]
Length = 99
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 1 MARTTVEDCIDKV--DNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTL 58
MAR TVEDC+ ++ +NRF L+ LA R + GA+ + K+K V ALREIA GT+
Sbjct: 1 MARITVEDCLQQIGNENRFALIHLAVERVKQHRSGAQFP-ERCKNKEIVCALREIAGGTV 59
Query: 59 SPDDLEE 65
+ D++ +
Sbjct: 60 NFDNIRQ 66
>gi|297581544|ref|ZP_06943467.1| DNA-directed RNA polymerase [Vibrio cholerae RC385]
gi|297534382|gb|EFH73220.1| DNA-directed RNA polymerase [Vibrio cholerae RC385]
Length = 90
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R + G V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQSGGKDALVPEENDKPTVIALREIEEGLIT 60
Query: 60 PDDLE 64
D L+
Sbjct: 61 KDVLD 65
>gi|332139562|ref|YP_004425300.1| DNA-directed RNA polymerase subunit omega [Alteromonas macleodii
str. 'Deep ecotype']
gi|226699539|sp|B4S2X2|RPOZ_ALTMD RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|327549584|gb|AEA96302.1| DNA-directed RNA polymerase subunit omega [Alteromonas macleodii
str. 'Deep ecotype']
Length = 90
Score = 84.9 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 38/80 (47%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED +DK+ NRF LVL+A+ R R ++ +G P VDV DK TV ALREI G ++
Sbjct: 1 MARVTVEDAVDKIGNRFDLVLVAARRARQIATEGKDPMVDVQNDKPTVTALREIEEGLVT 60
Query: 60 PDDLEEDFIHSLQKHVEIDE 79
LE+ + + Q+ E E
Sbjct: 61 AATLEQADLQA-QEQQEHAE 79
>gi|83595866|gb|ABC25228.1| DNA-directed RNA polymerase omega chain [uncultured marine
bacterium Ant4D3]
Length = 107
Score = 84.9 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ VDNRF L+++++ R R L+ G + ++ DK TVVALREIA G ++
Sbjct: 1 MARVTVEDCLENVDNRFELIMVSTKRARQLATGGKEAHIEWENDKCTVVALREIAEGFIN 60
Query: 60 PDDLEE-DFIHSLQKHVEIDEPDSPTENSDFSWHKPE 95
L++ D I+ V D+ + E
Sbjct: 61 ASILDDHDEINQQFTEVPADQDVLDEVTQTVAEASEE 97
>gi|16273628|ref|NP_439886.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
Rd KW20]
gi|68250341|ref|YP_249453.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
86-028NP]
gi|260580697|ref|ZP_05848524.1| DNA-directed RNA polymerase, omega subunit [Haemophilus
influenzae RdAW]
gi|1173169|sp|P43740|RPOZ_HAEIN RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|81335239|sp|Q4QJK4|RPOZ_HAEI8 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|1574602|gb|AAC23389.1| DNA-directed RNA polymerase, omega chain (rpoZ) [Haemophilus
influenzae Rd KW20]
gi|68058540|gb|AAX88793.1| DNA-directed RNA polymerase omega chain [Haemophilus influenzae
86-028NP]
gi|260092759|gb|EEW76695.1| DNA-directed RNA polymerase, omega subunit [Haemophilus
influenzae RdAW]
Length = 88
Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF L+L A+ R R L + P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLILTAARRARQLQLNQSAPLVPEDNDKPTVIALREIEKGLIN 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENS 87
D ++ + K E +E
Sbjct: 61 QDIMDAQEFQKMAKVQETEEAAVALITE 88
>gi|224370119|ref|YP_002604283.1| RpoZ [Desulfobacterium autotrophicum HRM2]
gi|259494387|sp|C0QKM9|RPOZ_DESAH RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|223692836|gb|ACN16119.1| RpoZ [Desulfobacterium autotrophicum HRM2]
Length = 68
Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR T+EDC+ V +RF LV +A+ R R L +GA + K+++ V+ALREIA+ +
Sbjct: 1 MARVTIEDCLKNVPSRFALVHMAALRVRQLREGADLLIKPSKNEDAVIALREIAANRIVL 60
Query: 61 DD 62
+
Sbjct: 61 KN 62
>gi|269103909|ref|ZP_06156606.1| DNA-directed RNA polymerase omega subunit [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268163807|gb|EEZ42303.1| DNA-directed RNA polymerase omega subunit [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 91
Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D +DK+ NRF L+ +A+ R R + GA P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVDKIGNRFDLIQIAARRARQMQTGAKDPLVPEENDKYTVIALREIEEGLIT 60
Query: 60 PDDLEEDFIHSLQKH 74
D L+ LQ+
Sbjct: 61 KDILDARERQELQEQ 75
>gi|283787719|ref|YP_003367584.1| DNA-directed RNA polymerase omega chain [Citrobacter rodentium
ICC168]
gi|282951173|emb|CBG90865.1| DNA-directed RNA polymerase omega chain [Citrobacter rodentium
ICC168]
Length = 91
Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R + G P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60
Query: 60 PDDLE 64
L+
Sbjct: 61 SQILD 65
>gi|90406729|ref|ZP_01214922.1| DNA-directed RNA polymerase omega subunit [Psychromonas sp.
CNPT3]
gi|90312182|gb|EAS40274.1| DNA-directed RNA polymerase omega subunit [Psychromonas sp.
CNPT3]
Length = 91
Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED ++ V NRF L+L+AS R R L+ QG P VD DK TV+ALREI +G ++
Sbjct: 1 MARVTVEDAVNVVGNRFDLILMASRRARQLATQGKTPLVDPENDKPTVIALREIEAGLIT 60
Query: 60 PDDLE-EDFIHSLQKH 74
+ ++ +D +K
Sbjct: 61 NEYMDIQDRQEKHEKQ 76
>gi|148981870|ref|ZP_01816555.1| DNA-directed RNA polymerase subunit omega [Vibrionales bacterium
SWAT-3]
gi|145960721|gb|EDK26062.1| DNA-directed RNA polymerase subunit omega [Vibrionales bacterium
SWAT-3]
Length = 90
Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++KV NRF LVL+A+ R R + G V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKVGNRFDLVLIAARRARQMQTGGKDSLVPEENDKPTVIALREIEEGLIT 60
Query: 60 PDDLE 64
D L+
Sbjct: 61 KDVLD 65
>gi|262273553|ref|ZP_06051367.1| DNA-directed RNA polymerase omega subunit [Grimontia hollisae CIP
101886]
gi|262222531|gb|EEY73842.1| DNA-directed RNA polymerase omega subunit [Grimontia hollisae CIP
101886]
Length = 91
Score = 84.5 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R + G V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQTGGKDALVQEENDKQTVIALREIEEGLIT 60
Query: 60 PDDLE 64
+ L+
Sbjct: 61 KEILD 65
>gi|330720615|gb|EGG98875.1| DNA-directed RNA polymerase omega subunit [gamma proteobacterium
IMCC2047]
Length = 119
Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+D VDNRF LV+LA+ R R L+ G +P V DK TV+ALREIA G ++
Sbjct: 1 MARITVEDCLDNVDNRFDLVMLATKRARQLATGGKEPLVKEDSDKATVIALREIADGLIT 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQ 101
+ L ++Q+ + ++ + +++ S +
Sbjct: 61 EESL---AARNMQEDIAEVFEETDSIDAELLAAVAATASEDE 99
>gi|90023336|ref|YP_529163.1| DNA-directed RNA polymerase, omega subunit [Saccharophagus
degradans 2-40]
gi|123395474|sp|Q21EC8|RPOZ_SACD2 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|89952936|gb|ABD82951.1| DNA-directed RNA polymerase, omega subunit [Saccharophagus
degradans 2-40]
Length = 90
Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 36/84 (42%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+D VDNRF LV++ S R R ++ QG +P V DK TV+ALREI G +
Sbjct: 1 MARITVEDCLDYVDNRFELVIVGSKRARQIATQGKEPLVAPENDKPTVIALREIELGLID 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSP 83
L ++ E E ++
Sbjct: 61 DAFLAATDAEPVEHFAEPSEENAD 84
>gi|320539301|ref|ZP_08038971.1| RNA polymerase, omega subunit [Serratia symbiotica str. Tucson]
gi|320030693|gb|EFW12702.1| RNA polymerase, omega subunit [Serratia symbiotica str. Tucson]
Length = 91
Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R + G V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQIQTGGKDALVPEENDKYTVIALREIEEGLIT 60
Query: 60 PDDLE 64
L+
Sbjct: 61 SQILD 65
>gi|197286692|ref|YP_002152564.1| DNA-directed RNA polymerase subunit omega [Proteus mirabilis
HI4320]
gi|227355116|ref|ZP_03839527.1| DNA-directed RNA polymerase omega chain [Proteus mirabilis ATCC
29906]
gi|226703160|sp|B4EZA3|RPOZ_PROMH RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|194684179|emb|CAR45639.1| DNA-directed RNA polymerase omega chain [Proteus mirabilis
HI4320]
gi|227164903|gb|EEI49750.1| DNA-directed RNA polymerase omega chain [Proteus mirabilis ATCC
29906]
Length = 91
Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R L GA P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQLQVGAKDPLVPEENDKMTVIALREIEEGLIN 60
Query: 60 PDDLE 64
L+
Sbjct: 61 GKILD 65
>gi|145629149|ref|ZP_01784948.1| DNA-directed RNA polymerase omega subunit [Haemophilus influenzae
22.1-21]
gi|145630712|ref|ZP_01786491.1| DNA-directed RNA polymerase omega subunit [Haemophilus influenzae
R3021]
gi|145639713|ref|ZP_01795316.1| DNA-directed RNA polymerase omega subunit [Haemophilus influenzae
PittII]
gi|148825720|ref|YP_001290473.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
PittEE]
gi|148827159|ref|YP_001291912.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
PittGG]
gi|229846917|ref|ZP_04467023.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
7P49H1]
gi|260582087|ref|ZP_05849882.1| DNA-directed RNA polymerase, omega subunit [Haemophilus
influenzae NT127]
gi|166230320|sp|A5UBD9|RPOZ_HAEIE RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166230321|sp|A5UFH3|RPOZ_HAEIG RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|144978652|gb|EDJ88375.1| DNA-directed RNA polymerase omega subunit [Haemophilus influenzae
22.1-21]
gi|144983838|gb|EDJ91288.1| DNA-directed RNA polymerase omega subunit [Haemophilus influenzae
R3021]
gi|145271270|gb|EDK11184.1| DNA-directed RNA polymerase omega subunit [Haemophilus influenzae
PittII]
gi|148715880|gb|ABQ98090.1| DNA-directed RNA polymerase omega subunit [Haemophilus influenzae
PittEE]
gi|148718401|gb|ABQ99528.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
PittGG]
gi|229810001|gb|EEP45721.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
7P49H1]
gi|260094977|gb|EEW78870.1| DNA-directed RNA polymerase, omega subunit [Haemophilus
influenzae NT127]
gi|309750682|gb|ADO80666.1| DNA-directed RNA polymerase omega chain [Haemophilus influenzae
R2866]
gi|309972867|gb|ADO96068.1| DNA-directed RNA polymerase omega chain [Haemophilus influenzae
R2846]
Length = 88
Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF L+L A+ R R L + P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLILTAARRARQLQLNQSVPLVPEDNDKPTVIALREIEKGLIN 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENS 87
D ++ + K E +E
Sbjct: 61 QDIMDAQEFQKMAKVQETEEAAVALITE 88
>gi|331007596|ref|ZP_08330743.1| DNA-directed RNA polymerase omega subunit [gamma proteobacterium
IMCC1989]
gi|330418589|gb|EGG93108.1| DNA-directed RNA polymerase omega subunit [gamma proteobacterium
IMCC1989]
Length = 115
Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+D VDNRF LV++ + R R ++ G P V DK TV+ALREI G +
Sbjct: 1 MARITVEDCLDHVDNRFELVMVGTKRARQIATGGKDPMVPEENDKPTVIALREIEEGFIG 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMS 103
P L E ++ V+ + + +++
Sbjct: 61 PSILTEKEEDDYEEMVDDIAAIEASLAGGLVEESIPQENDVEIT 104
>gi|15804190|ref|NP_290229.1| DNA-directed RNA polymerase subunit omega [Escherichia coli
O157:H7 EDL933]
gi|15833778|ref|NP_312551.1| DNA-directed RNA polymerase subunit omega [Escherichia coli
O157:H7 str. Sakai]
gi|16131520|ref|NP_418106.1| RNA polymerase, omega subunit [Escherichia coli str. K-12 substr.
MG1655]
gi|16762569|ref|NP_458186.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|16767026|ref|NP_462641.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|26250296|ref|NP_756336.1| DNA-directed RNA polymerase subunit omega [Escherichia coli
CFT073]
gi|29144058|ref|NP_807400.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|56415631|ref|YP_152706.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|62182235|ref|YP_218652.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|74314116|ref|YP_312535.1| DNA-directed RNA polymerase subunit omega [Shigella sonnei Ss046]
gi|82546082|ref|YP_410029.1| DNA-directed RNA polymerase subunit omega [Shigella boydii Sb227]
gi|82779140|ref|YP_405489.1| DNA-directed RNA polymerase subunit omega [Shigella dysenteriae
Sd197]
gi|89110363|ref|AP_004143.1| RNA polymerase, omega subunit [Escherichia coli str. K-12 substr.
W3110]
gi|91213167|ref|YP_543153.1| DNA-directed RNA polymerase subunit omega [Escherichia coli
UTI89]
gi|110643890|ref|YP_671620.1| DNA-directed RNA polymerase subunit omega [Escherichia coli 536]
gi|110807673|ref|YP_691193.1| DNA-directed RNA polymerase subunit omega [Shigella flexneri 5
str. 8401]
gi|117625921|ref|YP_859244.1| DNA-directed RNA polymerase subunit omega [Escherichia coli APEC
O1]
gi|152972503|ref|YP_001337649.1| DNA-directed RNA polymerase subunit omega [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|156936178|ref|YP_001440094.1| DNA-directed RNA polymerase subunit omega [Cronobacter sakazakii
ATCC BAA-894]
gi|157149266|ref|YP_001456585.1| DNA-directed RNA polymerase subunit omega [Citrobacter koseri
ATCC BAA-895]
gi|157155218|ref|YP_001465130.1| DNA-directed RNA polymerase subunit omega [Escherichia coli
E24377A]
gi|157163130|ref|YP_001460448.1| DNA-directed RNA polymerase subunit omega [Escherichia coli HS]
gi|161505722|ref|YP_001572834.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|161616823|ref|YP_001590788.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|167549009|ref|ZP_02342768.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|167995215|ref|ZP_02576305.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168233266|ref|ZP_02658324.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|168235356|ref|ZP_02660414.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|168241921|ref|ZP_02666853.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|168260503|ref|ZP_02682476.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|168464949|ref|ZP_02698841.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|168748700|ref|ZP_02773722.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
O157:H7 str. EC4113]
gi|168753474|ref|ZP_02778481.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
O157:H7 str. EC4401]
gi|168759770|ref|ZP_02784777.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
O157:H7 str. EC4501]
gi|168766070|ref|ZP_02791077.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
O157:H7 str. EC4486]
gi|168772382|ref|ZP_02797389.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
O157:H7 str. EC4196]
gi|168779805|ref|ZP_02804812.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
O157:H7 str. EC4076]
gi|168785526|ref|ZP_02810533.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
O157:H7 str. EC869]
gi|168798619|ref|ZP_02823626.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
O157:H7 str. EC508]
gi|168818427|ref|ZP_02830427.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|170018121|ref|YP_001723075.1| DNA-directed RNA polymerase subunit omega [Escherichia coli ATCC
8739]
gi|170083156|ref|YP_001732476.1| RNA polymerase, omega subunit [Escherichia coli str. K-12 substr.
DH10B]
gi|170681716|ref|YP_001745949.1| DNA-directed RNA polymerase subunit omega [Escherichia coli
SMS-3-5]
gi|187733302|ref|YP_001882362.1| DNA-directed RNA polymerase subunit omega [Shigella boydii CDC
3083-94]
gi|188494853|ref|ZP_03002123.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
53638]
gi|191167801|ref|ZP_03029607.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli B7A]
gi|191170523|ref|ZP_03032076.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli F11]
gi|193063801|ref|ZP_03044888.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli E22]
gi|193070388|ref|ZP_03051330.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
E110019]
gi|194430065|ref|ZP_03062570.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
B171]
gi|194435763|ref|ZP_03067866.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
101-1]
gi|194442643|ref|YP_002042990.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194449521|ref|YP_002047772.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194469734|ref|ZP_03075718.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194737850|ref|YP_002116684.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|195936210|ref|ZP_03081592.1| DNA-directed RNA polymerase subunit omega [Escherichia coli
O157:H7 str. EC4024]
gi|197250989|ref|YP_002148672.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197263908|ref|ZP_03163982.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197364558|ref|YP_002144195.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|198245119|ref|YP_002217701.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|200386916|ref|ZP_03213528.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|204928843|ref|ZP_03220042.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|205354657|ref|YP_002228458.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|206580733|ref|YP_002235983.1| DNA-directed RNA polymerase, omega subunit [Klebsiella pneumoniae
342]
gi|207858978|ref|YP_002245629.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|208806966|ref|ZP_03249303.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
O157:H7 str. EC4206]
gi|208812693|ref|ZP_03254022.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
O157:H7 str. EC4045]
gi|208818582|ref|ZP_03258902.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
O157:H7 str. EC4042]
gi|209400040|ref|YP_002273129.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
O157:H7 str. EC4115]
gi|209921122|ref|YP_002295206.1| DNA-directed RNA polymerase subunit omega [Escherichia coli SE11]
gi|213029694|ref|ZP_03344141.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
gi|213052648|ref|ZP_03345526.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213425219|ref|ZP_03357969.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213586828|ref|ZP_03368654.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
gi|213620562|ref|ZP_03373345.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
gi|213647937|ref|ZP_03377990.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|213857742|ref|ZP_03384713.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|215488944|ref|YP_002331375.1| DNA-directed RNA polymerase subunit omega [Escherichia coli
O127:H6 str. E2348/69]
gi|217325595|ref|ZP_03441679.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
O157:H7 str. TW14588]
gi|218551176|ref|YP_002384967.1| DNA-directed RNA polymerase subunit omega [Escherichia fergusonii
ATCC 35469]
gi|218556212|ref|YP_002389125.1| DNA-directed RNA polymerase subunit omega [Escherichia coli IAI1]
gi|218560721|ref|YP_002393634.1| DNA-directed RNA polymerase subunit omega [Escherichia coli S88]
gi|218691932|ref|YP_002400144.1| DNA-directed RNA polymerase subunit omega [Escherichia coli ED1a]
gi|218697370|ref|YP_002405037.1| DNA-directed RNA polymerase subunit omega [Escherichia coli
55989]
gi|218702418|ref|YP_002410047.1| DNA-directed RNA polymerase subunit omega [Escherichia coli
IAI39]
gi|218707283|ref|YP_002414802.1| DNA-directed RNA polymerase subunit omega [Escherichia coli
UMN026]
gi|224585539|ref|YP_002639338.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|227883839|ref|ZP_04001644.1| DNA-directed RNA polymerase subunit omega [Escherichia coli
83972]
gi|237703443|ref|ZP_04533924.1| RNA polymerase [Escherichia sp. 3_2_53FAA]
gi|237728945|ref|ZP_04559426.1| RNA polymerase [Citrobacter sp. 30_2]
gi|238897099|ref|YP_002921845.1| DNA-directed RNA polymerase subunit omega [Klebsiella pneumoniae
NTUH-K2044]
gi|238902740|ref|YP_002928536.1| RNA polymerase, omega subunit [Escherichia coli BW2952]
gi|238910218|ref|ZP_04654055.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
gi|253771509|ref|YP_003034340.1| DNA-directed RNA polymerase subunit omega [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254038850|ref|ZP_04872902.1| RNA polymerase [Escherichia sp. 1_1_43]
gi|254163577|ref|YP_003046685.1| DNA-directed RNA polymerase subunit omega [Escherichia coli B
str. REL606]
gi|254795604|ref|YP_003080441.1| DNA-directed RNA polymerase subunit omega [Escherichia coli
O157:H7 str. TW14359]
gi|256021347|ref|ZP_05435212.1| DNA-directed RNA polymerase subunit omega [Shigella sp. D9]
gi|256025620|ref|ZP_05439485.1| DNA-directed RNA polymerase subunit omega [Escherichia sp.
4_1_40B]
gi|260599946|ref|YP_003212517.1| DNA-directed RNA polymerase subunit omega [Cronobacter turicensis
z3032]
gi|260846566|ref|YP_003224344.1| RNA polymerase, omega subunit [Escherichia coli O103:H2 str.
12009]
gi|260857956|ref|YP_003231847.1| RNA polymerase, omega subunit [Escherichia coli O26:H11 str.
11368]
gi|260870379|ref|YP_003236781.1| RNA polymerase, omega subunit [Escherichia coli O111:H- str.
11128]
gi|261224168|ref|ZP_05938449.1| DNA-directed RNA polymerase subunit omega [Escherichia coli
O157:H7 str. FRIK2000]
gi|261254778|ref|ZP_05947311.1| DNA-directed RNA polymerase subunit omega [Escherichia coli
O157:H7 str. FRIK966]
gi|261341743|ref|ZP_05969601.1| hypothetical protein ENTCAN_08221 [Enterobacter cancerogenus ATCC
35316]
gi|262045609|ref|ZP_06018628.1| DNA-directed RNA polymerase subunit omega [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
gi|283836027|ref|ZP_06355768.1| DNA-directed RNA polymerase, omega subunit [Citrobacter youngae
ATCC 29220]
gi|288932989|ref|YP_003437048.1| DNA-directed RNA polymerase subunit omega [Klebsiella variicola
At-22]
gi|289824109|ref|ZP_06543706.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
gi|290511783|ref|ZP_06551151.1| DNA-directed RNA polymerase subunit omega [Klebsiella sp. 1_1_55]
gi|291285020|ref|YP_003501838.1| DNA-directed RNA polymerase, subunit K/omega [Escherichia coli
O55:H7 str. CB9615]
gi|293407272|ref|ZP_06651196.1| rpoZ [Escherichia coli FVEC1412]
gi|293413083|ref|ZP_06655751.1| rpoZ [Escherichia coli B354]
gi|293417110|ref|ZP_06659737.1| rpoZ [Escherichia coli B185]
gi|293463973|ref|ZP_06664387.1| rpoZ [Escherichia coli B088]
gi|296100483|ref|YP_003610629.1| DNA-directed RNA polymerase subunit omega [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|298383018|ref|ZP_06992613.1| rpoZ [Escherichia coli FVEC1302]
gi|300815111|ref|ZP_07095336.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
107-1]
gi|300822419|ref|ZP_07102559.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
119-7]
gi|300898584|ref|ZP_07116914.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
198-1]
gi|300907692|ref|ZP_07125320.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
84-1]
gi|300919783|ref|ZP_07136258.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
115-1]
gi|300923460|ref|ZP_07139500.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
182-1]
gi|300927920|ref|ZP_07143479.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
187-1]
gi|300939289|ref|ZP_07153963.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
21-1]
gi|300950019|ref|ZP_07163969.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
116-1]
gi|300955362|ref|ZP_07167741.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
175-1]
gi|300983470|ref|ZP_07176617.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
200-1]
gi|300984898|ref|ZP_07177186.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
45-1]
gi|301018978|ref|ZP_07183201.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
69-1]
gi|301028428|ref|ZP_07191674.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
196-1]
gi|301047439|ref|ZP_07194518.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
185-1]
gi|301303884|ref|ZP_07210003.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
124-1]
gi|301325332|ref|ZP_07218839.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
78-1]
gi|301644316|ref|ZP_07244318.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
146-1]
gi|306816003|ref|ZP_07450141.1| DNA-directed RNA polymerase subunit omega [Escherichia coli
NC101]
gi|307140348|ref|ZP_07499704.1| DNA-directed RNA polymerase subunit omega [Escherichia coli H736]
gi|307314266|ref|ZP_07593874.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli W]
gi|309784370|ref|ZP_07679009.1| DNA-directed RNA polymerase, omega subunit [Shigella dysenteriae
1617]
gi|309797609|ref|ZP_07691997.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
145-7]
gi|311277431|ref|YP_003939662.1| DNA-directed RNA polymerase, omega subunit [Enterobacter cloacae
SCF1]
gi|312967982|ref|ZP_07782193.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
2362-75]
gi|312972065|ref|ZP_07786239.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
1827-70]
gi|329996953|ref|ZP_08302650.1| DNA-directed RNA polymerase, omega subunit [Klebsiella sp. MS
92-3]
gi|331644368|ref|ZP_08345497.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
H736]
gi|331649463|ref|ZP_08350549.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
M605]
gi|331655282|ref|ZP_08356281.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
M718]
gi|331659985|ref|ZP_08360923.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
TA206]
gi|331665274|ref|ZP_08366175.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
TA143]
gi|331670490|ref|ZP_08371329.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
TA271]
gi|331675127|ref|ZP_08375884.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
TA280]
gi|331679741|ref|ZP_08380411.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
H591]
gi|331685311|ref|ZP_08385897.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
H299]
gi|332282580|ref|ZP_08394993.1| RNA polymerase [Shigella sp. D9]
gi|67472384|sp|P0A800|RPOZ_ECOLI RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|67472385|sp|P0A801|RPOZ_ECOL6 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|67472386|sp|P0A802|RPOZ_ECO57 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|67472387|sp|P0A803|RPOZ_SALTY RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|67472388|sp|P0A804|RPOZ_SALTI RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|75479843|sp|Q57I91|RPOZ_SALCH RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|81599226|sp|Q5PC39|RPOZ_SALPA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|118587618|sp|Q31UQ7|RPOZ_SHIBS RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|118587619|sp|Q329K7|RPOZ_SHIDS RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|118587620|sp|Q3YW12|RPOZ_SHISS RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|122957888|sp|Q0TBG0|RPOZ_ECOL5 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|123047762|sp|Q0SYH7|RPOZ_SHIF8 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|123265943|sp|Q1R4U2|RPOZ_ECOUT RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166229414|sp|A8ARN6|RPOZ_CITK8 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166230315|sp|A1AHI0|RPOZ_ECOK1 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166230316|sp|A7MQB3|RPOZ_ENTS8 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166230325|sp|A6TFP8|RPOZ_KLEP7 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166991538|sp|A7ZTK1|RPOZ_ECO24 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166991539|sp|A8A6B1|RPOZ_ECOHS RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|189043982|sp|B1IYV1|RPOZ_ECOLC RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|189043997|sp|A9MKM3|RPOZ_SALAR RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|189043998|sp|A9MVP7|RPOZ_SALPB RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703124|sp|B7MFL0|RPOZ_ECO45 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703125|sp|B5YWE9|RPOZ_ECO5E RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703126|sp|B7NQ13|RPOZ_ECO7I RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703127|sp|B7M4D4|RPOZ_ECO8A RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703128|sp|B1X982|RPOZ_ECODH RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703129|sp|B7NEV3|RPOZ_ECOLU RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703130|sp|B6I3M8|RPOZ_ECOSE RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703131|sp|B1LK86|RPOZ_ECOSM RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703133|sp|B7LVL1|RPOZ_ESCF3 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703143|sp|B5XTE8|RPOZ_KLEP3 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703168|sp|B5EY10|RPOZ_SALA4 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703169|sp|B5FM73|RPOZ_SALDC RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703170|sp|B5QTY1|RPOZ_SALEP RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703171|sp|B5RG73|RPOZ_SALG2 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703172|sp|B4T9Z3|RPOZ_SALHS RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703173|sp|B4SXF1|RPOZ_SALNS RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703174|sp|B5BI24|RPOZ_SALPK RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703175|sp|B4U000|RPOZ_SALSV RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703178|sp|B2TTX9|RPOZ_SHIB3 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|254809241|sp|B7UM71|RPOZ_ECO27 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|254809242|sp|B7L773|RPOZ_ECO55 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|254809243|sp|B7N2X2|RPOZ_ECO81 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|254809257|sp|C0Q1Y1|RPOZ_SALPC RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|259494456|sp|C4ZXP1|RPOZ_ECOBW RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|25288508|pir||AH0969 DNA-directed RNA polymerase (EC 2.7.7.6) omega chain [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|307776499|pdb|3LU0|E Chain E, Molecular Model Of Escherichia Coli Core Rna Polymerase
gi|12518408|gb|AAG58793.1|AE005592_4 RNA polymerase, omega subunit [Escherichia coli O157:H7 str.
EDL933]
gi|26110726|gb|AAN82910.1|AE016769_25 DNA-directed RNA polymerase omega chain [Escherichia coli CFT073]
gi|146978|gb|AAA24229.1| omega protein [Escherichia coli]
gi|147864|gb|AAB00159.1| omega protein [Escherichia coli]
gi|290499|gb|AAA62002.1| RNA polymerase omega subunit [Escherichia coli]
gi|1790081|gb|AAC76673.1| RNA polymerase, omega subunit [Escherichia coli str. K-12 substr.
MG1655]
gi|13363999|dbj|BAB37947.1| RNA polymerase omega subunit [Escherichia coli O157:H7 str.
Sakai]
gi|16422310|gb|AAL22600.1| RNA polymerase, omega subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|16504874|emb|CAD03252.1| DNA-directed RNA polymerase omega chain [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29139694|gb|AAO71260.1| DNA-directed RNA polymerase omega chain [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|56129888|gb|AAV79394.1| DNA-directed RNA polymerase omega chain [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|62129868|gb|AAX67571.1| DNA-directed RNA polymerase omega chain [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|73857593|gb|AAZ90300.1| RNA polymerase, omega subunit [Shigella sonnei Ss046]
gi|81243288|gb|ABB63998.1| DNA-directed RNA polymerase omega chain [Shigella dysenteriae
Sd197]
gi|81247493|gb|ABB68201.1| RNA polymerase omega subunit [Shigella boydii Sb227]
gi|85676394|dbj|BAE77644.1| RNA polymerase, omega subunit [Escherichia coli str. K12 substr.
W3110]
gi|91074741|gb|ABE09622.1| RNA polymerase, omega subunit [Escherichia coli UTI89]
gi|110345482|gb|ABG71719.1| DNA-directed RNA polymerase omega chain [Escherichia coli 536]
gi|110617221|gb|ABF05888.1| RNA polymerase, omega subunit [Shigella flexneri 5 str. 8401]
gi|115515045|gb|ABJ03120.1| RNA polymerase, omega subunit [Escherichia coli APEC O1]
gi|150957352|gb|ABR79382.1| DNA-directed RNA polymerase omega subunit [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|156534432|gb|ABU79258.1| hypothetical protein ESA_04077 [Cronobacter sakazakii ATCC
BAA-894]
gi|157068810|gb|ABV08065.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli HS]
gi|157077248|gb|ABV16956.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
E24377A]
gi|157086471|gb|ABV16149.1| hypothetical protein CKO_05106 [Citrobacter koseri ATCC BAA-895]
gi|160867069|gb|ABX23692.1| hypothetical protein SARI_03898 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
gi|161366187|gb|ABX69955.1| hypothetical protein SPAB_04642 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|169753049|gb|ACA75748.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli ATCC
8739]
gi|169890991|gb|ACB04698.1| RNA polymerase, omega subunit [Escherichia coli str. K-12 substr.
DH10B]
gi|170519434|gb|ACB17612.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
SMS-3-5]
gi|187430294|gb|ACD09568.1| DNA-directed RNA polymerase, omega subunit [Shigella boydii CDC
3083-94]
gi|187771727|gb|EDU35571.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
O157:H7 str. EC4196]
gi|188016854|gb|EDU54976.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
O157:H7 str. EC4113]
gi|188490052|gb|EDU65155.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
53638]
gi|189002315|gb|EDU71301.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
O157:H7 str. EC4076]
gi|189359124|gb|EDU77543.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
O157:H7 str. EC4401]
gi|189364647|gb|EDU83066.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
O157:H7 str. EC4486]
gi|189369640|gb|EDU88056.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
O157:H7 str. EC4501]
gi|189374300|gb|EDU92716.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
O157:H7 str. EC869]
gi|189378848|gb|EDU97264.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
O157:H7 str. EC508]
gi|190902144|gb|EDV61887.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli B7A]
gi|190909331|gb|EDV68917.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli F11]
gi|192930516|gb|EDV83123.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli E22]
gi|192956327|gb|EDV86788.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
E110019]
gi|194401306|gb|ACF61528.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194407825|gb|ACF68044.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194411892|gb|EDX28209.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
B171]
gi|194425306|gb|EDX41290.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
101-1]
gi|194456098|gb|EDX44937.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194713352|gb|ACF92573.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|195632277|gb|EDX50761.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|197096035|emb|CAR61622.1| DNA-directed RNA polymerase omega chain [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|197214692|gb|ACH52089.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197242163|gb|EDY24783.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197291434|gb|EDY30786.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|197939635|gb|ACH76968.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|199604014|gb|EDZ02559.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|204322276|gb|EDZ07474.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|205274438|emb|CAR39470.1| DNA-directed RNA polymerase omega chain [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|205325601|gb|EDZ13440.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|205327072|gb|EDZ13836.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205332549|gb|EDZ19313.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|205338982|gb|EDZ25746.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|205344662|gb|EDZ31426.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|205350164|gb|EDZ36795.1| DNA-directed RNA polymerase, omega subunit [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|206569791|gb|ACI11567.1| DNA-directed RNA polymerase, omega subunit [Klebsiella pneumoniae
342]
gi|206710781|emb|CAR35142.1| DNA-directed RNA polymerase omega chain [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|208726767|gb|EDZ76368.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
O157:H7 str. EC4206]
gi|208733970|gb|EDZ82657.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
O157:H7 str. EC4045]
gi|208738705|gb|EDZ86387.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
O157:H7 str. EC4042]
gi|209161440|gb|ACI38873.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
O157:H7 str. EC4115]
gi|209754548|gb|ACI75581.1| RNA polymerase omega subunit [Escherichia coli]
gi|209754550|gb|ACI75582.1| RNA polymerase omega subunit [Escherichia coli]
gi|209754552|gb|ACI75583.1| RNA polymerase omega subunit [Escherichia coli]
gi|209754554|gb|ACI75584.1| RNA polymerase omega subunit [Escherichia coli]
gi|209754556|gb|ACI75585.1| RNA polymerase omega subunit [Escherichia coli]
gi|209914381|dbj|BAG79455.1| RNA polymerase omega subunit [Escherichia coli SE11]
gi|215267016|emb|CAS11461.1| RNA polymerase, omega subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|217321816|gb|EEC30240.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
O157:H7 str. TW14588]
gi|218354102|emb|CAV00661.1| RNA polymerase, omega subunit [Escherichia coli 55989]
gi|218358717|emb|CAQ91375.1| RNA polymerase, omega subunit [Escherichia fergusonii ATCC 35469]
gi|218362980|emb|CAR00618.1| RNA polymerase, omega subunit [Escherichia coli IAI1]
gi|218367490|emb|CAR05272.1| RNA polymerase, omega subunit [Escherichia coli S88]
gi|218372404|emb|CAR20278.1| RNA polymerase, omega subunit [Escherichia coli IAI39]
gi|218429496|emb|CAV17994.1| RNA polymerase, omega subunit [Escherichia coli ED1a]
gi|218434380|emb|CAR15306.1| RNA polymerase, omega subunit [Escherichia coli UMN026]
gi|222035357|emb|CAP78102.1| DNA-directed RNA polymerase omega chain [Escherichia coli LF82]
gi|224470067|gb|ACN47897.1| DNA-directed RNA polymerase omega subunit [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|226838815|gb|EEH70842.1| RNA polymerase [Escherichia sp. 1_1_43]
gi|226902707|gb|EEH88966.1| RNA polymerase [Escherichia sp. 3_2_53FAA]
gi|226909567|gb|EEH95485.1| RNA polymerase [Citrobacter sp. 30_2]
gi|227839117|gb|EEJ49583.1| DNA-directed RNA polymerase subunit omega [Escherichia coli
83972]
gi|238549427|dbj|BAH65778.1| DNA-directed RNA polymerase omega subunit [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|238863496|gb|ACR65494.1| RNA polymerase, omega subunit [Escherichia coli BW2952]
gi|242379173|emb|CAQ33975.1| RNA polymerase, omega subunit [Escherichia coli BL21(DE3)]
gi|253322553|gb|ACT27155.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253975478|gb|ACT41149.1| DNA-directed RNA polymerase subunit omega [Escherichia coli B
str. REL606]
gi|253979634|gb|ACT45304.1| DNA-directed RNA polymerase subunit omega [Escherichia coli
BL21(DE3)]
gi|254595004|gb|ACT74365.1| RNA polymerase, omega subunit [Escherichia coli O157:H7 str.
TW14359]
gi|257756605|dbj|BAI28107.1| RNA polymerase, omega subunit [Escherichia coli O26:H11 str.
11368]
gi|257761713|dbj|BAI33210.1| RNA polymerase, omega subunit [Escherichia coli O103:H2 str.
12009]
gi|257766735|dbj|BAI38230.1| RNA polymerase, omega subunit [Escherichia coli O111:H- str.
11128]
gi|259037035|gb|EEW38287.1| DNA-directed RNA polymerase subunit omega [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
gi|260219123|emb|CBA34478.1| DNA-directed RNA polymerase subunit omega [Cronobacter turicensis
z3032]
gi|260447332|gb|ACX37754.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli DH1]
gi|261248889|emb|CBG26743.1| DNA-directed RNA polymerase omega chain [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|267996005|gb|ACY90890.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|281180695|dbj|BAI57025.1| RNA polymerase omega subunit [Escherichia coli SE15]
gi|284923711|emb|CBG36808.1| DNA-directed RNA polymerase omega chain [Escherichia coli 042]
gi|288316110|gb|EFC55048.1| DNA-directed RNA polymerase, omega subunit [Enterobacter
cancerogenus ATCC 35316]
gi|288887718|gb|ADC56036.1| DNA-directed RNA polymerase, omega subunit [Klebsiella variicola
At-22]
gi|289775573|gb|EFD83573.1| DNA-directed RNA polymerase subunit omega [Klebsiella sp. 1_1_55]
gi|290764893|gb|ADD58854.1| DNA-directed RNA polymerase, subunit K/omega [Escherichia coli
O55:H7 str. CB9615]
gi|291068211|gb|EFE06320.1| DNA-directed RNA polymerase, omega subunit [Citrobacter youngae
ATCC 29220]
gi|291321605|gb|EFE61041.1| rpoZ [Escherichia coli B088]
gi|291426083|gb|EFE99117.1| rpoZ [Escherichia coli FVEC1412]
gi|291431141|gb|EFF04134.1| rpoZ [Escherichia coli B185]
gi|291468730|gb|EFF11223.1| rpoZ [Escherichia coli B354]
gi|294489470|gb|ADE88226.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
IHE3034]
gi|295054942|gb|ADF59680.1| DNA-directed RNA polymerase subunit omega [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|295095238|emb|CBK84328.1| DNA-directed RNA polymerase subunit omega [Enterobacter cloacae
subsp. cloacae NCTC 9394]
gi|298276854|gb|EFI18372.1| rpoZ [Escherichia coli FVEC1302]
gi|299878539|gb|EFI86750.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
196-1]
gi|300300647|gb|EFJ57032.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
185-1]
gi|300306934|gb|EFJ61454.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
200-1]
gi|300317734|gb|EFJ67518.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
175-1]
gi|300357747|gb|EFJ73617.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
198-1]
gi|300399472|gb|EFJ83010.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
69-1]
gi|300400628|gb|EFJ84166.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
84-1]
gi|300408327|gb|EFJ91865.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
45-1]
gi|300413136|gb|EFJ96446.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
115-1]
gi|300420287|gb|EFK03598.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
182-1]
gi|300450633|gb|EFK14253.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
116-1]
gi|300455796|gb|EFK19289.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
21-1]
gi|300464012|gb|EFK27505.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
187-1]
gi|300525066|gb|EFK46135.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
119-7]
gi|300532003|gb|EFK53065.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
107-1]
gi|300840847|gb|EFK68607.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
124-1]
gi|300847859|gb|EFK75619.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
78-1]
gi|301077354|gb|EFK92160.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
146-1]
gi|301160278|emb|CBW19801.1| DNA-directed RNA polymerase omega chain [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|305850399|gb|EFM50856.1| DNA-directed RNA polymerase subunit omega [Escherichia coli
NC101]
gi|306906089|gb|EFN36608.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli W]
gi|307555767|gb|ADN48542.1| RNA polymerase omega subunit [Escherichia coli ABU 83972]
gi|307628722|gb|ADN73026.1| DNA-directed RNA polymerase subunit omega [Escherichia coli
UM146]
gi|308118796|gb|EFO56058.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
145-7]
gi|308746626|gb|ADO46378.1| DNA-directed RNA polymerase, omega subunit [Enterobacter cloacae
SCF1]
gi|308927877|gb|EFP73345.1| DNA-directed RNA polymerase, omega subunit [Shigella dysenteriae
1617]
gi|309704051|emb|CBJ03397.1| DNA-directed RNA polymerase omega chain [Escherichia coli ETEC
H10407]
gi|310334442|gb|EFQ00647.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
1827-70]
gi|312287241|gb|EFR15150.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
2362-75]
gi|312914767|dbj|BAJ38741.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|312948210|gb|ADR29037.1| DNA-directed RNA polymerase subunit omega [Escherichia coli
O83:H1 str. NRG 857C]
gi|315062937|gb|ADT77264.1| RNA polymerase, omega subunit [Escherichia coli W]
gi|315138231|dbj|BAJ45390.1| DNA-directed RNA polymerase subunit omega [Escherichia coli DH1]
gi|315254037|gb|EFU34005.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
85-1]
gi|315285423|gb|EFU44868.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
110-3]
gi|315292918|gb|EFU52270.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
153-1]
gi|315296992|gb|EFU56272.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
16-3]
gi|315618647|gb|EFU99233.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
3431]
gi|320088162|emb|CBY97924.1| DNA-directed RNA polymerase omega chain [Salmonella enterica
subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
gi|320177347|gb|EFW52349.1| DNA-directed RNA polymerase omega subunit [Shigella dysenteriae
CDC 74-1112]
gi|320179987|gb|EFW54929.1| DNA-directed RNA polymerase omega subunit [Shigella boydii ATCC
9905]
gi|320185699|gb|EFW60457.1| DNA-directed RNA polymerase omega subunit [Shigella flexneri CDC
796-83]
gi|320191298|gb|EFW65948.1| DNA-directed RNA polymerase omega subunit [Escherichia coli
O157:H7 str. EC1212]
gi|320193844|gb|EFW68477.1| DNA-directed RNA polymerase omega subunit [Escherichia coli
WV_060327]
gi|320201325|gb|EFW75906.1| DNA-directed RNA polymerase omega subunit [Escherichia coli
EC4100B]
gi|320639556|gb|EFX09164.1| DNA-directed RNA polymerase subunit omega [Escherichia coli
O157:H7 str. G5101]
gi|320644995|gb|EFX14025.1| DNA-directed RNA polymerase subunit omega [Escherichia coli
O157:H- str. 493-89]
gi|320650262|gb|EFX18751.1| DNA-directed RNA polymerase subunit omega [Escherichia coli
O157:H- str. H 2687]
gi|320655614|gb|EFX23542.1| DNA-directed RNA polymerase subunit omega [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320661348|gb|EFX28772.1| DNA-directed RNA polymerase subunit omega [Escherichia coli
O55:H7 str. USDA 5905]
gi|320666362|gb|EFX33361.1| DNA-directed RNA polymerase subunit omega [Escherichia coli
O157:H7 str. LSU-61]
gi|321226795|gb|EFX51845.1| DNA-directed RNA polymerase omega subunit [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|322612907|gb|EFY09859.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322618972|gb|EFY15859.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322625251|gb|EFY22078.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322630081|gb|EFY26854.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322634273|gb|EFY31008.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322635826|gb|EFY32535.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322642971|gb|EFY39549.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322645036|gb|EFY41567.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322649864|gb|EFY46287.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322653071|gb|EFY49406.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322661110|gb|EFY57338.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322662401|gb|EFY58614.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322667279|gb|EFY63445.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322674344|gb|EFY70437.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322678448|gb|EFY74509.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322680954|gb|EFY76988.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322687110|gb|EFY83083.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|322716723|gb|EFZ08294.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
gi|323132102|gb|ADX19532.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
gi|323155302|gb|EFZ41485.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
EPECa14]
gi|323160740|gb|EFZ46676.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
E128010]
gi|323166864|gb|EFZ52603.1| DNA-directed RNA polymerase, omega subunit [Shigella sonnei 53G]
gi|323173258|gb|EFZ58887.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
LT-68]
gi|323177654|gb|EFZ63238.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
1180]
gi|323182440|gb|EFZ67844.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
1357]
gi|323189444|gb|EFZ74725.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
RN587/1]
gi|323193168|gb|EFZ78386.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323198249|gb|EFZ83355.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323200867|gb|EFZ85937.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323206621|gb|EFZ91579.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|323210466|gb|EFZ95352.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323216245|gb|EGA00973.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323220468|gb|EGA04922.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323225332|gb|EGA09566.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323228446|gb|EGA12577.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323234267|gb|EGA18355.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323237252|gb|EGA21319.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323244771|gb|EGA28775.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323245854|gb|EGA29844.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323250963|gb|EGA34839.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323257289|gb|EGA40988.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|323262213|gb|EGA45774.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323264576|gb|EGA48080.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323268865|gb|EGA52323.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|323376470|gb|ADX48738.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
KO11]
gi|323934806|gb|EGB31188.1| RNA polymerase Rpb6 [Escherichia coli E1520]
gi|323939591|gb|EGB35797.1| RNA polymerase Rpb6 [Escherichia coli E482]
gi|323944102|gb|EGB40182.1| RNA polymerase Rpb6 [Escherichia coli H120]
gi|323949888|gb|EGB45772.1| RNA polymerase Rpb6 [Escherichia coli H252]
gi|323954948|gb|EGB50727.1| RNA polymerase Rpb6 [Escherichia coli H263]
gi|323959897|gb|EGB55545.1| RNA polymerase Rpb6 [Escherichia coli H489]
gi|323965915|gb|EGB61363.1| RNA polymerase Rpb6 [Escherichia coli M863]
gi|323971291|gb|EGB66536.1| RNA polymerase Rpb6 [Escherichia coli TA007]
gi|323975132|gb|EGB70237.1| RNA polymerase Rpb6 [Escherichia coli TW10509]
gi|324008105|gb|EGB77324.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
57-2]
gi|324012716|gb|EGB81935.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
60-1]
gi|324019688|gb|EGB88907.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli MS
117-3]
gi|324111543|gb|EGC05524.1| RNA polymerase Rpb6 [Escherichia fergusonii B253]
gi|324116012|gb|EGC09938.1| RNA polymerase Rpb6 [Escherichia coli E1167]
gi|325499455|gb|EGC97314.1| DNA-directed RNA polymerase subunit omega [Escherichia fergusonii
ECD227]
gi|326337351|gb|EGD61186.1| DNA-directed RNA polymerase omega subunit [Escherichia coli
O157:H7 str. 1044]
gi|326339849|gb|EGD63656.1| DNA-directed RNA polymerase omega subunit [Escherichia coli
O157:H7 str. 1125]
gi|326625486|gb|EGE31831.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Dublin str. 3246]
gi|326629795|gb|EGE36138.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9]
gi|327250777|gb|EGE62479.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
STEC_7v]
gi|328539243|gb|EGF65272.1| DNA-directed RNA polymerase, omega subunit [Klebsiella sp. MS
92-3]
gi|330909710|gb|EGH38224.1| DNA-directed RNA polymerase omega subunit [Escherichia coli AA86]
gi|331036662|gb|EGI08888.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
H736]
gi|331041961|gb|EGI14105.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
M605]
gi|331047297|gb|EGI19375.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
M718]
gi|331053200|gb|EGI25233.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
TA206]
gi|331057784|gb|EGI29770.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
TA143]
gi|331062552|gb|EGI34472.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
TA271]
gi|331068036|gb|EGI39434.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
TA280]
gi|331072913|gb|EGI44238.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
H591]
gi|331077682|gb|EGI48894.1| DNA-directed RNA polymerase, omega subunit [Escherichia coli
H299]
gi|332089361|gb|EGI94465.1| DNA-directed RNA polymerase, omega subunit [Shigella boydii
3594-74]
gi|332104932|gb|EGJ08278.1| RNA polymerase [Shigella sp. D9]
gi|332345638|gb|AEE58972.1| DNA-directed RNA polymerase, omega subunit RpoZ [Escherichia coli
UMNK88]
gi|332990590|gb|AEF09573.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
gi|332996125|gb|EGK15752.1| DNA-directed RNA polymerase, omega subunit [Shigella flexneri
VA-6]
Length = 91
Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R + G P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60
Query: 60 PDDLE 64
L+
Sbjct: 61 NQILD 65
>gi|149908560|ref|ZP_01897222.1| RpoZ [Moritella sp. PE36]
gi|149808394|gb|EDM68331.1| RpoZ [Moritella sp. PE36]
Length = 91
Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVE+ + +V NRF L+L+A+ R R L G +P V DK TV+ALREI +G ++
Sbjct: 1 MARVTVENAVQQVGNRFDLILMAARRARQLQIHGKEPLVAPENDKPTVIALREIEAGLIT 60
Query: 60 PDDLE 64
+ ++
Sbjct: 61 NELMD 65
>gi|332532745|ref|ZP_08408619.1| DNA-directed RNA polymerase omega subunit [Pseudoalteromonas
haloplanktis ANT/505]
gi|332037772|gb|EGI74222.1| DNA-directed RNA polymerase omega subunit [Pseudoalteromonas
haloplanktis ANT/505]
Length = 91
Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAK-PTVDVGKDKNTVVALREIASGTLS 59
MAR TVED +D V NRF L+L+A+ R R ++ G K P VD DK TVVALREI G +
Sbjct: 1 MARVTVEDAVDAVGNRFDLILVAARRARQIAVGGKTPLVDPENDKPTVVALREIELGLVD 60
Query: 60 PDDLEEDFIHSLQKHVE 76
+ D I ++ +
Sbjct: 61 SSSM--DLIDREEQQHQ 75
>gi|67459336|ref|YP_246960.1| DNA-directed RNA polymerase subunit omega [Rickettsia felis
URRWXCal2]
gi|75536238|sp|Q4UKX8|RPOZ_RICFE RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|67004869|gb|AAY61795.1| DNA-directed RNA polymerase omega chain [Rickettsia felis
URRWXCal2]
Length = 126
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV--DVGKDKNTVVALREIASGTL 58
MAR T EDC + +RF LV+LA+ + L+ + +DK V++LR IA+G +
Sbjct: 1 MARITAEDCNKIIPDRFRLVVLATRYAKLLNYKVETNQIKKEKRDKPPVISLRRIAAGKV 60
Query: 59 SPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEG 105
S + LE+D I+SL+ I EP + S+ K E L ++E
Sbjct: 61 SVEQLEQDLINSLRTKTMI-EPIVNQDESEDIEEKFEYLPEVCITED 106
>gi|317153083|ref|YP_004121131.1| DNA-directed RNA polymerase subunit omega [Desulfovibrio
aespoeensis Aspo-2]
gi|316943334|gb|ADU62385.1| DNA-directed RNA polymerase, omega subunit [Desulfovibrio
aespoeensis Aspo-2]
Length = 78
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++KV NRFL+ + R + +G P ++ K V +LREIA+G + P
Sbjct: 1 MARITVEDCLEKVSNRFLITQMGIKRVKQYREGYLPLIESKN-KEIVNSLREIAAGKILP 59
Query: 61 DD 62
D
Sbjct: 60 DQ 61
>gi|319898191|ref|YP_004136388.1| DNA-directed RNA polymerase omega subunit [Haemophilus influenzae
F3031]
gi|317433697|emb|CBY82085.1| DNA-directed RNA polymerase omega subunit [Haemophilus influenzae
F3031]
Length = 88
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF L+L A+ R R L + P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLILTAARRARQLQLNQSVPLVPEDNDKPTVIALREIEKGLVN 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENS 87
D ++ + K E +E
Sbjct: 61 QDIMDAQEFQKMAKVQETEEAAVALITE 88
>gi|84386374|ref|ZP_00989402.1| DNA-directed RNA polymerase omega subunit [Vibrio splendidus
12B01]
gi|84378798|gb|EAP95653.1| DNA-directed RNA polymerase omega subunit [Vibrio splendidus
12B01]
Length = 90
Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++KV NRF LVL+++ R R + G V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKVGNRFDLVLISARRARQMQTGGKDSLVPEENDKPTVIALREIEEGLIT 60
Query: 60 PDDLE 64
D L+
Sbjct: 61 KDVLD 65
>gi|27364299|ref|NP_759827.1| DNA-directed RNA polymerase subunit omega [Vibrio vulnificus
CMCP6]
gi|37678426|ref|NP_933035.1| DNA-directed RNA polymerase subunit omega [Vibrio vulnificus
YJ016]
gi|320157691|ref|YP_004190070.1| DNA-directed RNA polymerase subunit omega [Vibrio vulnificus
MO6-24/O]
gi|31340414|sp|Q8DDV5|RPOZ_VIBVU RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|41688624|sp|Q7MPX0|RPOZ_VIBVY RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|27360417|gb|AAO09354.1| DNA-directed RNA polymerase, omega subunit [Vibrio vulnificus
CMCP6]
gi|37197166|dbj|BAC93006.1| DNA-directed RNA polymerase, omega subunit [Vibrio vulnificus
YJ016]
gi|319933003|gb|ADV87867.1| DNA-directed RNA polymerase omega subunit [Vibrio vulnificus
MO6-24/O]
Length = 90
Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++KV NRF LVL+A+ R R + G V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKVGNRFDLVLIAARRARQMQTGGKDSLVPEENDKPTVIALREIEEGLIT 60
Query: 60 PDDLE 64
+ L+
Sbjct: 61 KEVLD 65
>gi|242241343|ref|YP_002989524.1| DNA-directed RNA polymerase subunit omega [Dickeya dadantii
Ech703]
gi|242133400|gb|ACS87702.1| DNA-directed RNA polymerase, omega subunit [Dickeya dadantii
Ech703]
Length = 91
Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R + G +P V DK TV+ALREI ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKEPLVPEENDKYTVIALREIEENLIN 60
Query: 60 PDDLE 64
L+
Sbjct: 61 GQILD 65
>gi|260771996|ref|ZP_05880913.1| DNA-directed RNA polymerase omega subunit [Vibrio metschnikovii
CIP 69.14]
gi|260612863|gb|EEX38065.1| DNA-directed RNA polymerase omega subunit [Vibrio metschnikovii
CIP 69.14]
Length = 90
Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++KV NRF LVL+A+ R R + G V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKVGNRFDLVLIAARRARQIQTGGKDALVPEENDKTTVIALREIEEGLIT 60
Query: 60 PDDLEED 66
D L+
Sbjct: 61 KDVLDNR 67
>gi|85060200|ref|YP_455902.1| DNA-directed RNA polymerase subunit omega [Sodalis glossinidius
str. 'morsitans']
gi|118587621|sp|Q2NQS8|RPOZ_SODGM RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|84780720|dbj|BAE75497.1| RNA polymerase omega subunit [Sodalis glossinidius str.
'morsitans']
Length = 91
Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R + G P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQIQVGGKDPLVAEENDKYTVIALREIEEGLIT 60
Query: 60 PDDLE 64
L+
Sbjct: 61 SQILD 65
>gi|226327610|ref|ZP_03803128.1| hypothetical protein PROPEN_01481 [Proteus penneri ATCC 35198]
gi|225204136|gb|EEG86490.1| hypothetical protein PROPEN_01481 [Proteus penneri ATCC 35198]
Length = 91
Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R L GA P V DK TVVALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQLQVGAKDPLVPEENDKMTVVALREIEEGLIN 60
Query: 60 PDDLE 64
L+
Sbjct: 61 GKILD 65
>gi|90581392|ref|ZP_01237187.1| DNA-directed RNA polymerase omega subunit [Vibrio angustum S14]
gi|330447148|ref|ZP_08310798.1| DNA-directed RNA polymerase, omega subunit [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|90437369|gb|EAS62565.1| DNA-directed RNA polymerase omega subunit [Vibrio angustum S14]
gi|328491339|dbj|GAA05295.1| DNA-directed RNA polymerase, omega subunit [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 91
Score = 83.8 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D +DK+ NRF L+ +A+ R R + G P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVDKIGNRFDLIQIAARRARQMQTGGKDPLVPEENDKYTVIALREIEEGLIT 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSD 88
D L+ LQ+ + D
Sbjct: 61 KDILDARERQELQEQEAAELAAVSAIAGD 89
>gi|261250546|ref|ZP_05943121.1| DNA-directed RNA polymerase omega subunit [Vibrio orientalis CIP
102891]
gi|323494592|ref|ZP_08099696.1| DNA-directed RNA polymerase subunit omega [Vibrio brasiliensis
LMG 20546]
gi|260939115|gb|EEX95102.1| DNA-directed RNA polymerase omega subunit [Vibrio orientalis CIP
102891]
gi|323311195|gb|EGA64355.1| DNA-directed RNA polymerase subunit omega [Vibrio brasiliensis
LMG 20546]
Length = 90
Score = 83.8 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++KV NRF LVL+A+ R R + G V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKVGNRFDLVLIAARRARQMQTGGKDSLVPEENDKQTVIALREIEEGLIT 60
Query: 60 PDDLE 64
+ L+
Sbjct: 61 KEILD 65
>gi|332703806|ref|ZP_08423894.1| DNA-directed RNA polymerase subunit omega [Desulfovibrio
africanus str. Walvis Bay]
gi|332553955|gb|EGJ50999.1| DNA-directed RNA polymerase subunit omega [Desulfovibrio
africanus str. Walvis Bay]
Length = 73
Score = 83.8 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+++VDNRFL+V ++ R + +G +P V K V +LREIA+G + P
Sbjct: 1 MARITVEDCLEQVDNRFLIVQMSIKRIKQYREGYRPLVQSDN-KEVVTSLREIAAGKVKP 59
Query: 61 DDLEEDF 67
+ E+
Sbjct: 60 AESIEEA 66
>gi|163802265|ref|ZP_02196160.1| DNA-directed RNA polymerase subunit omega [Vibrio sp. AND4]
gi|159174070|gb|EDP58880.1| DNA-directed RNA polymerase subunit omega [Vibrio sp. AND4]
Length = 90
Score = 83.4 bits (205), Expect = 8e-15, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++KV NRF LVL+++ R R + G V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKVGNRFDLVLISARRARQMQTGGKDALVPEENDKPTVIALREIEEGLIT 60
Query: 60 PDDLE 64
+ L+
Sbjct: 61 KEVLD 65
>gi|293393633|ref|ZP_06637943.1| DNA-directed RNA polymerase subunit omega [Serratia odorifera DSM
4582]
gi|291423968|gb|EFE97187.1| DNA-directed RNA polymerase subunit omega [Serratia odorifera DSM
4582]
Length = 91
Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R + G V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQIQTGGKDALVPEENDKYTVIALREIEEGLIN 60
Query: 60 PDDLE 64
L+
Sbjct: 61 NQILD 65
>gi|317050126|ref|YP_004117774.1| DNA-directed RNA polymerase subunit omega [Pantoea sp. At-9b]
gi|316951743|gb|ADU71218.1| DNA-directed RNA polymerase, omega subunit [Pantoea sp. At-9b]
Length = 91
Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R + G P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKATVIALREIEEGLIT 60
Query: 60 PDDLE 64
L+
Sbjct: 61 NQILD 65
>gi|77361701|ref|YP_341276.1| DNA-directed RNA polymerase subunit omega [Pseudoalteromonas
haloplanktis TAC125]
gi|115305599|sp|Q3IJH7|RPOZ_PSEHT RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|76876612|emb|CAI87834.1| DNA-directed RNA polymerase omega chain (EC 2.7. 7.6) (RNAP omega
subunit) (Transcriptase omega chain) (RNA polymerase
omega subunit) [Pseudoalteromonas haloplanktis TAC125]
Length = 91
Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED +D + NRF L+L+A+ R R ++ G +P VD DK TV+ALREI G +
Sbjct: 1 MARVTVEDAVDAIGNRFDLILVAARRARQIAVGGKRPLVDPENDKPTVIALREIELGLVD 60
Query: 60 PDDLE 64
++
Sbjct: 61 SSSMD 65
>gi|260774738|ref|ZP_05883641.1| DNA-directed RNA polymerase omega subunit [Vibrio coralliilyticus
ATCC BAA-450]
gi|260609300|gb|EEX35452.1| DNA-directed RNA polymerase omega subunit [Vibrio coralliilyticus
ATCC BAA-450]
Length = 90
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++KV NRF LVL+A+ R R + G V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKVGNRFDLVLIAARRARQMQTGGKDSLVPEENDKATVIALREIEEGLIT 60
Query: 60 PDDLE 64
+ L+
Sbjct: 61 KEILD 65
>gi|170766634|ref|ZP_02901087.1| DNA-directed RNA polymerase, omega subunit [Escherichia albertii
TW07627]
gi|170124072|gb|EDS93003.1| DNA-directed RNA polymerase, omega subunit [Escherichia albertii
TW07627]
Length = 91
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R + G P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60
Query: 60 PDDLE 64
L+
Sbjct: 61 NQILD 65
>gi|194431283|ref|ZP_03063576.1| DNA-directed RNA polymerase, omega subunit [Shigella dysenteriae
1012]
gi|194420738|gb|EDX36814.1| DNA-directed RNA polymerase, omega subunit [Shigella dysenteriae
1012]
gi|332084494|gb|EGI89689.1| DNA-directed RNA polymerase, omega subunit [Shigella dysenteriae
155-74]
gi|332084831|gb|EGI90014.1| DNA-directed RNA polymerase, omega subunit [Shigella boydii
5216-82]
Length = 91
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R + G P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60
Query: 60 PDDLE 64
L+
Sbjct: 61 NQILD 65
>gi|332997754|gb|EGK17365.1| DNA-directed RNA polymerase, omega subunit [Shigella flexneri
K-272]
gi|333013289|gb|EGK32661.1| DNA-directed RNA polymerase, omega subunit [Shigella flexneri
K-227]
Length = 91
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF L+L+A+ R R + G P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLILVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60
Query: 60 PDDLE 64
L+
Sbjct: 61 NQILD 65
>gi|56461481|ref|YP_156762.1| DNA-directed RNA polymerase subunit omega [Idiomarina loihiensis
L2TR]
gi|81600152|sp|Q5QYI0|RPOZ_IDILO RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|56180491|gb|AAV83213.1| DNA-directed RNA polymerase omega subunit [Idiomarina loihiensis
L2TR]
Length = 89
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 36/79 (45%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVED +D+V NRF L+LLAS R R L+ G +P V+ +K TV+ALREI G +
Sbjct: 1 MARVTVEDAVDRVGNRFDLILLASRRARQLANGKEPLVETKNEKPTVIALREIEQGLIDN 60
Query: 61 DDLEEDFIHSLQKHVEIDE 79
+ L+ + + QK + +E
Sbjct: 61 ERLDIED-QAAQKQQDAEE 78
>gi|157373099|ref|YP_001481088.1| DNA-directed RNA polymerase subunit omega [Serratia
proteamaculans 568]
gi|270265243|ref|ZP_06193505.1| DNA-directed RNA polymerase, omega subunit [Serratia odorifera
4Rx13]
gi|166991541|sp|A8GLH0|RPOZ_SERP5 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|157324863|gb|ABV43960.1| DNA-directed RNA polymerase, omega subunit [Serratia
proteamaculans 568]
gi|270040877|gb|EFA13979.1| DNA-directed RNA polymerase, omega subunit [Serratia odorifera
4Rx13]
Length = 91
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R + G V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQIQTGGKDALVPEENDKYTVIALREIEEGLIT 60
Query: 60 PDDLE 64
L+
Sbjct: 61 SQILD 65
>gi|114561552|ref|YP_749065.1| DNA-directed RNA polymerase subunit omega [Shewanella
frigidimarina NCIMB 400]
gi|122300964|sp|Q088T8|RPOZ_SHEFN RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|114332845|gb|ABI70227.1| DNA-directed RNA polymerase, omega subunit [Shewanella
frigidimarina NCIMB 400]
Length = 92
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/67 (49%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED ++K+ NRF ++L+A+ R R ++ QG +P VD DK TVVALREI G ++
Sbjct: 1 MARVTVEDAVNKIGNRFDMILVAARRARQIAVQGKEPMVDEMNDKPTVVALREIELGLVT 60
Query: 60 PDDLEED 66
+ L+ D
Sbjct: 61 SNTLDAD 67
>gi|188532207|ref|YP_001906004.1| DNA-directed RNA polymerase omega chain [Erwinia tasmaniensis
Et1/99]
gi|259906724|ref|YP_002647080.1| DNA-directed RNA polymerase omega chain [Erwinia pyrifoliae
Ep1/96]
gi|292486542|ref|YP_003529408.1| DNA-directed RNA polymerase subunit omega [Erwinia amylovora
CFBP1430]
gi|292897777|ref|YP_003537146.1| DNA-directed RNA polymerase subunit omega [Erwinia amylovora ATCC
49946]
gi|300714633|ref|YP_003739436.1| DNA-directed RNA polymerase omega chain [Erwinia billingiae
Eb661]
gi|226703132|sp|B2VL59|RPOZ_ERWT9 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|188027249|emb|CAO95088.1| DNA-directed RNA polymerase omega chain [Erwinia tasmaniensis
Et1/99]
gi|224962346|emb|CAX53801.1| DNA-directed RNA polymerase omega chain [Erwinia pyrifoliae
Ep1/96]
gi|283476507|emb|CAY72322.1| DNA-directed RNA polymerase omega chain [Erwinia pyrifoliae DSM
12163]
gi|291197625|emb|CBJ44719.1| DNA-directed RNA polymerase omega chain [Erwinia amylovora ATCC
49946]
gi|291551955|emb|CBA18992.1| DNA-directed RNA polymerase omega chain [Erwinia amylovora
CFBP1430]
gi|299060469|emb|CAX57576.1| DNA-directed RNA polymerase omega chain [Erwinia billingiae
Eb661]
gi|310765947|gb|ADP10897.1| DNA-directed RNA polymerase omega chain [Erwinia sp. Ejp617]
gi|312170610|emb|CBX78873.1| DNA-directed RNA polymerase omega chain [Erwinia amylovora ATCC
BAA-2158]
Length = 91
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R + G P V DK+TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKSTVIALREIEEGLIT 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSDFSW 91
L+ + Q+ E + + +
Sbjct: 61 NQILD---VRDRQEQHEQEAAELQAVTAIAEG 89
>gi|119773406|ref|YP_926146.1| DNA-directed RNA polymerase subunit omega [Shewanella amazonensis
SB2B]
gi|166230358|sp|A1S270|RPOZ_SHEAM RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|119765906|gb|ABL98476.1| DNA-directed RNA polymerase, omega subunit [Shewanella
amazonensis SB2B]
Length = 92
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED + ++ NRF ++L+A+ R R ++ QG P V+ DK TV+ALREI G ++
Sbjct: 1 MARVTVEDAVKQIGNRFDMILVAARRARQIAVQGKDPMVEEQNDKPTVIALREIEKGLVN 60
Query: 60 PDDLEED 66
L+ D
Sbjct: 61 AGTLDAD 67
>gi|15838103|ref|NP_298791.1| DNA-directed RNA polymerase subunit omega [Xylella fastidiosa 9a5c]
gi|13959492|sp|Q9PD77|RPOZ_XYLFA RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|9106534|gb|AAF84311.1|AE003980_3 RNA polymerase omega subunit [Xylella fastidiosa 9a5c]
Length = 99
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 12/108 (11%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK--DKNTVVALREIASGTL 58
MAR TVEDC++ V+NRF LV++AS R R L+ G P ++ DK TV+ALREIA+ +
Sbjct: 1 MARITVEDCLEVVNNRFELVMMASKRARQLANGVPPLIENTNSEDKPTVLALREIAARKI 60
Query: 59 SPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGD 106
++E I ++ TE W E ++ MS+ D
Sbjct: 61 DSKMIDE--IEKAER--------ERTEREAMEWAAAEVVADEDMSKSD 98
>gi|322835056|ref|YP_004215083.1| DNA-directed RNA polymerase, omega subunit [Rahnella sp. Y9602]
gi|321170257|gb|ADW75956.1| DNA-directed RNA polymerase, omega subunit [Rahnella sp. Y9602]
Length = 91
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R L G P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQLQSGGKDPLVAEENDKVTVIALREIEEGLIT 60
Query: 60 PDDLE 64
L+
Sbjct: 61 NQILD 65
>gi|297569668|ref|YP_003691012.1| DNA-directed RNA polymerase, omega subunit [Desulfurivibrio
alkaliphilus AHT2]
gi|296925583|gb|ADH86393.1| DNA-directed RNA polymerase, omega subunit [Desulfurivibrio
alkaliphilus AHT2]
Length = 94
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 1 MARTTVEDCIDKV--DNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTL 58
MAR TVEDC+ ++ +NRF L+ LA R + QGA P + K+K V LREIA+G +
Sbjct: 1 MARITVEDCLQQIGNENRFALIHLAVERVKQHRQGA-PFPERCKNKEIVCTLREIANGMV 59
Query: 59 SPDDLEEDFIHSLQKHVEIDEPDSPT 84
+ D++ LQ+ +
Sbjct: 60 NFDNVR-GLKKQLQEQAAVTVDQEAD 84
>gi|304413235|ref|ZP_07394708.1| RNA polymerase omega subunit [Candidatus Regiella insecticola
LSR1]
gi|304284078|gb|EFL92471.1| RNA polymerase omega subunit [Candidatus Regiella insecticola
LSR1]
Length = 93
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQ--GAKPTVDVGKDKNTVVALREIASGTL 58
MAR TV+D ++K+ NRF LVL+A+ R R L Q G V DK TV ALREI +G +
Sbjct: 6 MARVTVQDAVEKIGNRFDLVLVAARRARQLQQARGKGSLVPEENDKVTVTALREIEAGLI 65
Query: 59 SPDDLE 64
+ L+
Sbjct: 66 TNAILD 71
>gi|330895692|gb|EGH27984.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
pv. japonica str. M301072PT]
Length = 88
Score = 82.6 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLAS-HRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTL 58
MAR TVEDC++ VDNRF LV+L++ R R L+ G +P + DK TV+ALREIA+G +
Sbjct: 1 MARVTVEDCLEHVDNRFELVMLSTNKRARQLATGGKEPKLAWENDKPTVMALREIAAGVM 60
Query: 59 SPDDLEEDFIHSLQKHVEIDEPDSPT 84
+ E I + E +S
Sbjct: 61 DYSVIAEAEIVEDEPLFAAFEDESNE 86
>gi|319776736|ref|YP_004139224.1| DNA-directed RNA polymerase omega subunit [Haemophilus influenzae
F3047]
gi|329123153|ref|ZP_08251723.1| DNA-directed RNA polymerase subunit omega [Haemophilus aegyptius
ATCC 11116]
gi|317451327|emb|CBY87565.1| DNA-directed RNA polymerase omega subunit [Haemophilus influenzae
F3047]
gi|327471708|gb|EGF17150.1| DNA-directed RNA polymerase subunit omega [Haemophilus aegyptius
ATCC 11116]
Length = 88
Score = 82.6 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF L+L A+ R R L + P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLILTAARRARQLQLNQSVPLVPEDNDKPTVIALREIEKGLIN 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENS 87
D ++ + + K E +E
Sbjct: 61 QDIMDAEEFQKMAKVQETEEAAVALITE 88
>gi|239947928|ref|ZP_04699681.1| DNA-directed RNA polymerase subunit omega [Rickettsia endosymbiont
of Ixodes scapularis]
gi|239922204|gb|EER22228.1| DNA-directed RNA polymerase subunit omega [Rickettsia endosymbiont
of Ixodes scapularis]
Length = 127
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV--DVGKDKNTVVALREIASGTL 58
MAR T EDC + +RF LV+LA+ + L+ + + +DK V++LR IA+G +
Sbjct: 1 MARITAEDCNKIISDRFRLVVLATRYAKLLNYKVETSQIKKEKRDKPPVISLRRIAAGKV 60
Query: 59 SPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEG 105
S LE+D I+SL+ I EP + S+ K E L + E
Sbjct: 61 SVAQLEQDLINSLRTRTMI-EPLVNQDESEDVEEKFEYLPEVYIGED 106
>gi|302341897|ref|YP_003806426.1| DNA-directed RNA polymerase, omega subunit [Desulfarculus baarsii
DSM 2075]
gi|301638510|gb|ADK83832.1| DNA-directed RNA polymerase, omega subunit [Desulfarculus baarsii
DSM 2075]
Length = 118
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTL 58
MAR T+EDC+ +V NRF LV + + R R L GA P ++ K V ALREIA G +
Sbjct: 1 MARVTIEDCLKRVPNRFALVHMTAQRVRQLRDGAPPLLESKN-KEVVQALREIAGGQV 57
>gi|24114919|ref|NP_709429.1| DNA-directed RNA polymerase subunit omega [Shigella flexneri 2a
str. 301]
gi|30065075|ref|NP_839246.1| DNA-directed RNA polymerase subunit omega [Shigella flexneri 2a
str. 2457T]
gi|41688671|sp|Q83PM8|RPOZ_SHIFL RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|24054162|gb|AAN45136.1| RNA polymerase, omega subunit [Shigella flexneri 2a str. 301]
gi|30043336|gb|AAP19057.1| RNA polymerase, omega subunit [Shigella flexneri 2a str. 2457T]
gi|281603012|gb|ADA75996.1| putative DNA-directed RNA polymerase, subunit K/omega [Shigella
flexneri 2002017]
gi|313647476|gb|EFS11926.1| DNA-directed RNA polymerase, omega subunit [Shigella flexneri 2a
str. 2457T]
gi|332749895|gb|EGJ80307.1| DNA-directed RNA polymerase, omega subunit [Shigella flexneri
K-671]
gi|332750607|gb|EGJ81015.1| DNA-directed RNA polymerase, omega subunit [Shigella flexneri
4343-70]
gi|332751329|gb|EGJ81732.1| DNA-directed RNA polymerase, omega subunit [Shigella flexneri
2747-71]
gi|332764149|gb|EGJ94386.1| DNA-directed RNA polymerase, omega subunit [Shigella flexneri
2930-71]
gi|332997337|gb|EGK16953.1| DNA-directed RNA polymerase, omega subunit [Shigella flexneri
K-218]
gi|333012859|gb|EGK32236.1| DNA-directed RNA polymerase, omega subunit [Shigella flexneri
K-304]
Length = 91
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R + G P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSDFSW 91
L+ + Q+ E++ + +
Sbjct: 61 NQILD---VRERQEQQELEAAELQAVTAIAEG 89
>gi|51594394|ref|YP_068585.1| DNA-directed RNA polymerase subunit omega [Yersinia
pseudotuberculosis IP 32953]
gi|123440448|ref|YP_001004442.1| DNA-directed RNA polymerase subunit omega [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|153948913|ref|YP_001399041.1| DNA-directed RNA polymerase subunit omega [Yersinia
pseudotuberculosis IP 31758]
gi|170026384|ref|YP_001722889.1| DNA-directed RNA polymerase subunit omega [Yersinia
pseudotuberculosis YPIII]
gi|186893381|ref|YP_001870493.1| DNA-directed RNA polymerase subunit omega [Yersinia
pseudotuberculosis PB1/+]
gi|238750788|ref|ZP_04612286.1| DNA-directed RNA polymerase subunit omega [Yersinia rohdei ATCC
43380]
gi|238755586|ref|ZP_04616923.1| DNA-directed RNA polymerase subunit omega [Yersinia ruckeri ATCC
29473]
gi|238759848|ref|ZP_04621004.1| DNA-directed RNA polymerase subunit omega [Yersinia aldovae ATCC
35236]
gi|238764309|ref|ZP_04625260.1| DNA-directed RNA polymerase subunit omega [Yersinia kristensenii
ATCC 33638]
gi|238784016|ref|ZP_04628032.1| DNA-directed RNA polymerase subunit omega [Yersinia bercovieri
ATCC 43970]
gi|238789533|ref|ZP_04633317.1| DNA-directed RNA polymerase subunit omega [Yersinia frederiksenii
ATCC 33641]
gi|238794539|ref|ZP_04638147.1| DNA-directed RNA polymerase subunit omega [Yersinia intermedia
ATCC 29909]
gi|332159671|ref|YP_004296248.1| DNA-directed RNA polymerase subunit omega [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|81640833|sp|Q66GE6|RPOZ_YERPS RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166230374|sp|A1JHV7|RPOZ_YERE8 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166991545|sp|A7FCR3|RPOZ_YERP3 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703197|sp|B2JYM2|RPOZ_YERPB RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703199|sp|B1JQZ5|RPOZ_YERPY RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|51587676|emb|CAH19276.1| DNA-directed RNA polymerase, omega chain [Yersinia
pseudotuberculosis IP 32953]
gi|122087409|emb|CAL10190.1| DNA-directed RNA polymerase, omega chain [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|152960408|gb|ABS47869.1| DNA-directed RNA polymerase, omega subunit [Yersinia
pseudotuberculosis IP 31758]
gi|169752918|gb|ACA70436.1| DNA-directed RNA polymerase, omega subunit [Yersinia
pseudotuberculosis YPIII]
gi|186696407|gb|ACC87036.1| DNA-directed RNA polymerase, omega subunit [Yersinia
pseudotuberculosis PB1/+]
gi|238697460|gb|EEP90226.1| DNA-directed RNA polymerase subunit omega [Yersinia kristensenii
ATCC 33638]
gi|238701909|gb|EEP94470.1| DNA-directed RNA polymerase subunit omega [Yersinia aldovae ATCC
35236]
gi|238706186|gb|EEP98566.1| DNA-directed RNA polymerase subunit omega [Yersinia ruckeri ATCC
29473]
gi|238710932|gb|EEQ03152.1| DNA-directed RNA polymerase subunit omega [Yersinia rohdei ATCC
43380]
gi|238715124|gb|EEQ07120.1| DNA-directed RNA polymerase subunit omega [Yersinia bercovieri
ATCC 43970]
gi|238722286|gb|EEQ13942.1| DNA-directed RNA polymerase subunit omega [Yersinia frederiksenii
ATCC 33641]
gi|238726119|gb|EEQ17665.1| DNA-directed RNA polymerase subunit omega [Yersinia intermedia
ATCC 29909]
gi|318603767|emb|CBY25265.1| DNA-directed RNA polymerase omega subunit [Yersinia
enterocolitica subsp. palearctica Y11]
gi|325663901|gb|ADZ40545.1| DNA-directed RNA polymerase subunit omega [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|330860936|emb|CBX71214.1| DNA-directed RNA polymerase subunit omega [Yersinia
enterocolitica W22703]
Length = 91
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R + G V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQIQSGGKDALVPEENDKVTVIALREIEEGLIT 60
Query: 60 PDDLE 64
L+
Sbjct: 61 NQILD 65
>gi|323497038|ref|ZP_08102061.1| DNA-directed RNA polymerase subunit omega [Vibrio sinaloensis DSM
21326]
gi|323317882|gb|EGA70870.1| DNA-directed RNA polymerase subunit omega [Vibrio sinaloensis DSM
21326]
Length = 90
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++KV NRF LVL+A+ R R + G V DK TV+ALREI ++
Sbjct: 1 MARVTVQDAVEKVGNRFDLVLIAARRARQMQTGGKDSLVPEENDKPTVIALREIEESLIT 60
Query: 60 PDDLE 64
+ L+
Sbjct: 61 KEILD 65
>gi|84622702|ref|YP_450074.1| DNA-directed RNA polymerase subunit omega [Xanthomonas oryzae pv.
oryzae MAFF 311018]
gi|116247698|sp|Q5H3R9|RPOZ_XANOR RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|118595712|sp|Q2P6M7|RPOZ_XANOM RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|84366642|dbj|BAE67800.1| RNA polymerase omega subunit [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 99
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV--GKDKNTVVALREIASGTL 58
MAR TVEDC++ V+NRF LV++AS R R L+ G +P ++ DK TV+ALREIA+ +
Sbjct: 1 MARITVEDCLEVVNNRFELVMMASKRARQLANGVQPLIENAAASDKPTVMALREIAARRI 60
Query: 59 SPDDLEE 65
++E
Sbjct: 61 DNALIDE 67
>gi|284008965|emb|CBA75853.1| DNA-directed RNA polymerase omega chain [Arsenophonus nasoniae]
Length = 91
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R L +G P V DK TV++LREI SG ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQLQIKGKSPLVKEENDKVTVISLREIESGLIN 60
Query: 60 PDDLE 64
L+
Sbjct: 61 AQILD 65
>gi|71274731|ref|ZP_00651019.1| RNA polymerase, omega subunit [Xylella fastidiosa Dixon]
gi|71899588|ref|ZP_00681743.1| RNA polymerase, omega subunit [Xylella fastidiosa Ann-1]
gi|170730027|ref|YP_001775460.1| DNA-directed RNA polymerase subunit omega [Xylella fastidiosa M12]
gi|226703196|sp|B0U6W4|RPOZ_XYLFM RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|71164463|gb|EAO14177.1| RNA polymerase, omega subunit [Xylella fastidiosa Dixon]
gi|71730630|gb|EAO32706.1| RNA polymerase, omega subunit [Xylella fastidiosa Ann-1]
gi|167964820|gb|ACA11830.1| RNA polymerase omega subunit [Xylella fastidiosa M12]
Length = 98
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 11/107 (10%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK-DKNTVVALREIASGTLS 59
MAR TVEDC++ V+NRF LV++AS R R L+ G P ++ DK TV+ALREIA+ ++
Sbjct: 1 MARITVEDCLEVVNNRFELVMMASKRARQLANGVPPLIENNSEDKPTVLALREIAARKIN 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGD 106
++E I ++ TE W E ++ +S+ D
Sbjct: 61 SKMIDE--IEKAER--------ERTEREAMEWAAAEVVADEDISKSD 97
>gi|254507266|ref|ZP_05119402.1| DNA-directed RNA polymerase, omega subunit [Vibrio
parahaemolyticus 16]
gi|219549726|gb|EED26715.1| DNA-directed RNA polymerase, omega subunit [Vibrio
parahaemolyticus 16]
Length = 90
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++KV NRF LVL+A+ R R + G V DK TV+ALREI ++
Sbjct: 1 MARVTVQDAVEKVGNRFDLVLIAARRARQMQTGGKDSLVPEENDKPTVIALREIEESLIT 60
Query: 60 PDDLE 64
+ L+
Sbjct: 61 KEILD 65
>gi|212633217|ref|YP_002309742.1| DNA-directed RNA polymerase subunit omega [Shewanella
piezotolerans WP3]
gi|226703176|sp|B8CHM9|RPOZ_SHEPW RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|212554701|gb|ACJ27155.1| Probable DNA-directed RNA polymerase omega subunit [Shewanella
piezotolerans WP3]
Length = 93
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED ++K+ NRF ++L+A+ R R ++ QG P V+ DK TV+ALREI G ++
Sbjct: 1 MARVTVEDAVNKIGNRFDMILVAARRARQIAVQGKDPMVEEENDKPTVIALREIELGLVT 60
Query: 60 PDDLEED 66
D L+ D
Sbjct: 61 ADTLDAD 67
>gi|149189232|ref|ZP_01867519.1| DNA-directed RNA polymerase subunit omega [Vibrio shilonii AK1]
gi|148836986|gb|EDL53936.1| DNA-directed RNA polymerase subunit omega [Vibrio shilonii AK1]
Length = 90
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++KV NRF LVL+++ R R + G V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKVGNRFDLVLISARRARQMQIGGKDALVPEENDKPTVIALREIEEGLIT 60
Query: 60 PDDLE 64
+ L+
Sbjct: 61 KEVLD 65
>gi|290473317|ref|YP_003466183.1| RNA polymerase subunit omega [Xenorhabdus bovienii SS-2004]
gi|289172616|emb|CBJ79385.1| RNA polymerase, omega subunit [Xenorhabdus bovienii SS-2004]
Length = 91
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R L G P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQLQSGGKDPLVAEENDKMTVIALREIEQGLIN 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSDFSW 91
L+ + Q+ E D + +
Sbjct: 61 NKILD---VRDRQEQQEQDAAEIKAVSVIAEG 89
>gi|145633448|ref|ZP_01789178.1| DNA-directed RNA polymerase omega subunit [Haemophilus influenzae
3655]
gi|145636798|ref|ZP_01792464.1| DNA-directed RNA polymerase omega subunit [Haemophilus influenzae
PittHH]
gi|229845421|ref|ZP_04465551.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
6P18H1]
gi|144986011|gb|EDJ92613.1| DNA-directed RNA polymerase omega subunit [Haemophilus influenzae
3655]
gi|145270096|gb|EDK10033.1| DNA-directed RNA polymerase omega subunit [Haemophilus influenzae
PittHH]
gi|229811617|gb|EEP47316.1| DNA-directed RNA polymerase subunit omega [Haemophilus influenzae
6P18H1]
Length = 88
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF L+L A+ R R L + P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLILTAARRARQLQLNQSVPLVPEDNDKPTVIALREIEKGLIN 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENS 87
D ++ + K E +E
Sbjct: 61 QDIMDAQEFQEMAKVQETEEAAVALITE 88
>gi|332304820|ref|YP_004432671.1| DNA-directed RNA polymerase, omega subunit [Glaciecola
agarilytica 4H-3-7+YE-5]
gi|332172149|gb|AEE21403.1| DNA-directed RNA polymerase, omega subunit [Glaciecola
agarilytica 4H-3-7+YE-5]
Length = 90
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED +DK+ NRF LVL+A+ R R L+ +G V VG DK TVVALREI G ++
Sbjct: 1 MARVTVEDAVDKIGNRFDLVLVAARRARQLAIEGKVAHVSVGTDKPTVVALREIEEGHVT 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWH 92
L+ +L+ D+ + +
Sbjct: 61 ASTLDA---ENLRDQHAQDQAQFESVANILQDQ 90
>gi|37524292|ref|NP_927636.1| DNA-directed RNA polymerase subunit omega [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|253987693|ref|YP_003039049.1| DNA-directed RNA polymerase subunit omega [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|41688629|sp|Q7N9P3|RPOZ_PHOLL RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|36783715|emb|CAE12568.1| DNA-directed RNA polymerase omega chain (transcriptase omega
chain) (RNA polymerase omega subunit) [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|211638600|emb|CAR67220.1| dna-directed rna polymerase omega chain (ec 2.7.7.6) (rnap omeg
subunit) (transcriptase omega chain) (rna polymerase
omega subunit) [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253779143|emb|CAQ82303.1| DNA-directed RNA polymerase omega chain [Photorhabdus
asymbiotica]
Length = 91
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R L G P V DK TV+ALRE+ G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQLQTGGKDPLVAEENDKVTVIALREVEEGLIN 60
Query: 60 PDDLE 64
L+
Sbjct: 61 GKILD 65
>gi|24371958|ref|NP_716000.1| DNA-directed RNA polymerase subunit omega [Shewanella oneidensis
MR-1]
gi|120600556|ref|YP_965130.1| DNA-directed RNA polymerase subunit omega [Shewanella sp.
W3-18-1]
gi|146294714|ref|YP_001185138.1| DNA-directed RNA polymerase subunit omega [Shewanella
putrefaciens CN-32]
gi|32171651|sp|Q8EJU7|RPOZ_SHEON RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166230362|sp|A4YBK6|RPOZ_SHEPC RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166230364|sp|A1RPI1|RPOZ_SHESW RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|24345804|gb|AAN53445.1|AE015484_3 DNA-directed RNA polymerase, omega subunit [Shewanella oneidensis
MR-1]
gi|120560649|gb|ABM26576.1| DNA-directed RNA polymerase, omega subunit [Shewanella sp.
W3-18-1]
gi|145566404|gb|ABP77339.1| DNA-directed RNA polymerase, omega subunit [Shewanella
putrefaciens CN-32]
gi|319427949|gb|ADV56023.1| DNA-directed RNA polymerase, omega subunit [Shewanella
putrefaciens 200]
Length = 92
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED ++++ NRF ++L+A+ R R ++ QG P V+ DK TV+ALREI G ++
Sbjct: 1 MARVTVEDAVEQIGNRFDMILVAARRARQIAVQGKDPMVEEMNDKPTVIALREIELGLVN 60
Query: 60 PDDLEED 66
L+ D
Sbjct: 61 AHTLDAD 67
>gi|308047833|ref|YP_003911399.1| DNA-directed RNA polymerase subunit omega [Ferrimonas balearica
DSM 9799]
gi|307630023|gb|ADN74325.1| DNA-directed RNA polymerase subunit omega [Ferrimonas balearica
DSM 9799]
Length = 92
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/67 (53%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED +DK+ NRF L+L+A+ R R LS QG + V+V DK+TVVALREI G ++
Sbjct: 1 MARVTVEDAVDKIGNRFDLILVAARRARQLSVQGKEALVEVENDKSTVVALREIEQGLIN 60
Query: 60 PDDLEED 66
L+E
Sbjct: 61 SAALDEQ 67
>gi|109896678|ref|YP_659933.1| DNA-directed RNA polymerase, omega subunit [Pseudoalteromonas
atlantica T6c]
gi|123065106|sp|Q15Z09|RPOZ_PSEA6 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|109698959|gb|ABG38879.1| DNA-directed RNA polymerase subunit omega [Pseudoalteromonas
atlantica T6c]
Length = 90
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED +DK+ NRF LVL+A+ R R L+ +G V VG DK TVVALREI G ++
Sbjct: 1 MARVTVEDAVDKIGNRFDLVLVAARRARQLAIEGKVAHVSVGTDKPTVVALREIEEGHVT 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWH 92
L+ +L+ D+ + +
Sbjct: 61 ASTLDA---ENLRDQHAQDQAQFESVANILQEQ 90
>gi|256823642|ref|YP_003147605.1| DNA-directed RNA polymerase subunit omega [Kangiella koreensis
DSM 16069]
gi|256797181|gb|ACV27837.1| DNA-directed RNA polymerase, omega subunit [Kangiella koreensis
DSM 16069]
Length = 82
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQ-GAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++KV NRF L++LA+ R R ++ G P VD DK TVVALREI +
Sbjct: 1 MARVTVQDAVEKVGNRFDLIMLAAKRARQIATGGHDPKVDWDNDKPTVVALREIEDELTT 60
Query: 60 PDDLEED 66
+ +E D
Sbjct: 61 RETVEAD 67
>gi|320354075|ref|YP_004195414.1| DNA-directed RNA polymerase subunit omega [Desulfobulbus
propionicus DSM 2032]
gi|320122577|gb|ADW18123.1| DNA-directed RNA polymerase subunit omega [Desulfobulbus
propionicus DSM 2032]
Length = 89
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 38/95 (40%), Positives = 53/95 (55%), Gaps = 8/95 (8%)
Query: 1 MARTTVEDCIDKV--DNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTL 58
MAR TVEDC+ KV DNRF L+ LA R R +G V GK+K V+ LREIA+G +
Sbjct: 1 MARITVEDCLGKVGDDNRFSLIHLAVERIRQHRKGEPFLV-AGKNKEIVMTLREIAAGKV 59
Query: 59 SPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHK 93
+ D+ IH L K + D+ + T + + +
Sbjct: 60 TFDN-----IHELPKQRKADQKAAETVVEEDNAEE 89
>gi|113971942|ref|YP_735735.1| DNA-directed RNA polymerase subunit omega [Shewanella sp. MR-4]
gi|114045840|ref|YP_736390.1| DNA-directed RNA polymerase subunit omega [Shewanella sp. MR-7]
gi|117922243|ref|YP_871435.1| DNA-directed RNA polymerase subunit omega [Shewanella sp. ANA-3]
gi|123029259|sp|Q0HE39|RPOZ_SHESM RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|123030993|sp|Q0HZX2|RPOZ_SHESR RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166230363|sp|A0L1W0|RPOZ_SHESA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|113886626|gb|ABI40678.1| DNA-directed RNA polymerase, omega subunit [Shewanella sp. MR-4]
gi|113887282|gb|ABI41333.1| DNA-directed RNA polymerase, omega subunit [Shewanella sp. MR-7]
gi|117614575|gb|ABK50029.1| DNA-directed RNA polymerase, omega subunit [Shewanella sp. ANA-3]
Length = 92
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED ++++ NRF ++L+A+ R R ++ QG P V+ DK TV+ALREI G ++
Sbjct: 1 MARVTVEDAVEQIGNRFDMILVAARRARQIAVQGKDPMVEEMNDKPTVIALREIELGLVN 60
Query: 60 PDDLEED 66
L+ D
Sbjct: 61 AHTLDAD 67
>gi|87121091|ref|ZP_01076982.1| DNA-directed RNA polymerase omega subunit [Marinomonas sp.
MED121]
gi|86163583|gb|EAQ64857.1| DNA-directed RNA polymerase omega subunit [Marinomonas sp.
MED121]
Length = 75
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 7/80 (8%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ VDNRF LV++A+ R R L+ G V + DK TVVALREIA ++
Sbjct: 1 MARVTVEDCLENVDNRFQLVMVAAKRARQLATGGKDAKVAIEDDKFTVVALREIAEDVIN 60
Query: 60 PDDLEEDFIHSLQKHVEIDE 79
+++ LQ I E
Sbjct: 61 AGNVD------LQDQQPIHE 74
>gi|145641874|ref|ZP_01797449.1| DNA-directed RNA polymerase omega subunit [Haemophilus influenzae
R3021]
gi|145273496|gb|EDK13367.1| DNA-directed RNA polymerase omega subunit [Haemophilus influenzae
22.4-21]
gi|301170497|emb|CBW30104.1| RNA polymerase, omega subunit [Haemophilus influenzae 10810]
Length = 88
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF L+L A+ R R L + P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLILTAARRARQLQLNQSVPLVPEDNDKPTVIALREIEKGLIN 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENS 87
D ++ + K E +E
Sbjct: 61 QDIMDAQEFQEMAKVQEAEEAAVALITE 88
>gi|157373476|ref|YP_001472076.1| DNA-directed RNA polymerase subunit omega [Shewanella sediminis
HAW-EB3]
gi|157963689|ref|YP_001503723.1| DNA-directed RNA polymerase subunit omega [Shewanella pealeana
ATCC 700345]
gi|189044002|sp|A8H9F1|RPOZ_SHEPA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|189044003|sp|A8FQ25|RPOZ_SHESH RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|157315850|gb|ABV34948.1| DNA-directed RNA polymerase, omega subunit [Shewanella sediminis
HAW-EB3]
gi|157848689|gb|ABV89188.1| DNA-directed RNA polymerase, omega subunit [Shewanella pealeana
ATCC 700345]
Length = 94
Score = 81.4 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED ++++ NRF ++L+A+ R R ++ QG P V+ DK TV+ALREI G ++
Sbjct: 1 MARVTVEDAVNQIGNRFDMILVAARRARQIAVQGKDPMVEEENDKPTVIALREIELGLVT 60
Query: 60 PDDLEED 66
D L+ D
Sbjct: 61 ADTLDAD 67
>gi|315127920|ref|YP_004069923.1| DNA-directed RNA polymerase subunit omega [Pseudoalteromonas sp.
SM9913]
gi|315016434|gb|ADT69772.1| DNA-directed RNA polymerase subunit omega [Pseudoalteromonas sp.
SM9913]
Length = 91
Score = 81.4 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED +D + NRF L+L+A+ R R ++ G P VD DK TVVALREI G +
Sbjct: 1 MARVTVEDAVDAIGNRFDLILVAARRARQIAVGGKDPLVDPENDKPTVVALREIELGLVD 60
Query: 60 PDDLE 64
++
Sbjct: 61 NSSMD 65
>gi|127514426|ref|YP_001095623.1| DNA-directed RNA polymerase subunit omega [Shewanella loihica
PV-4]
gi|166230361|sp|A3QIR6|RPOZ_SHELP RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|126639721|gb|ABO25364.1| DNA-directed RNA polymerase, omega subunit [Shewanella loihica
PV-4]
Length = 93
Score = 81.4 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED ++++ NRF ++L+A+ R R ++ QG P V+ DK TV+ALREI G ++
Sbjct: 1 MARVTVEDAVNQIGNRFDMILVAARRARQIAVQGKDPMVEEENDKPTVIALREIELGLVT 60
Query: 60 PDDLEED 66
D L+ D
Sbjct: 61 ADTLDAD 67
>gi|119472965|ref|ZP_01614821.1| DNA-directed RNA polymerase subunit omega [Alteromonadales
bacterium TW-7]
gi|119444634|gb|EAW25944.1| DNA-directed RNA polymerase subunit omega [Alteromonadales
bacterium TW-7]
Length = 91
Score = 81.4 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAK-PTVDVGKDKNTVVALREIASGTLS 59
MAR TVED +D V NRF L+L+A+ R R ++ G K P VD DK TVVALREI +
Sbjct: 1 MARVTVEDAVDAVGNRFDLILVAARRARQIAVGGKTPLVDPENDKPTVVALREIELNLVD 60
Query: 60 PDDLEEDFIHSLQKHVE 76
+ D I ++ +
Sbjct: 61 SSSM--DLIDREEQQHQ 75
>gi|21232677|ref|NP_638594.1| DNA-directed RNA polymerase subunit omega [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gi|21244119|ref|NP_643701.1| DNA-directed RNA polymerase subunit omega [Xanthomonas axonopodis
pv. citri str. 306]
gi|66767289|ref|YP_242051.1| DNA-directed RNA polymerase subunit omega [Xanthomonas campestris
pv. campestris str. 8004]
gi|78049067|ref|YP_365242.1| DNA-directed RNA polymerase subunit omega [Xanthomonas campestris
pv. vesicatoria str. 85-10]
gi|166713268|ref|ZP_02244475.1| DNA-directed RNA polymerase subunit omega [Xanthomonas oryzae pv.
oryzicola BLS256]
gi|188990332|ref|YP_001902342.1| DNA-directed RNA polymerase subunit omega [Xanthomonas campestris
pv. campestris str. B100]
gi|289662156|ref|ZP_06483737.1| DNA-directed RNA polymerase subunit omega [Xanthomonas campestris
pv. vasculorum NCPPB702]
gi|289668011|ref|ZP_06489086.1| DNA-directed RNA polymerase subunit omega [Xanthomonas campestris
pv. musacearum NCPPB4381]
gi|325918118|ref|ZP_08180273.1| DNA-directed RNA polymerase subunit omega [Xanthomonas
vesicatoria ATCC 35937]
gi|325922283|ref|ZP_08184064.1| DNA-directed RNA polymerase subunit omega [Xanthomonas gardneri
ATCC 19865]
gi|325927898|ref|ZP_08189122.1| DNA-directed RNA polymerase subunit omega [Xanthomonas perforans
91-118]
gi|54039291|sp|P66733|RPOZ_XANCP RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|54042199|sp|P66732|RPOZ_XANAC RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|81306730|sp|Q4UY42|RPOZ_XANC8 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|118595711|sp|Q3BPS1|RPOZ_XANC5 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703194|sp|B0RP99|RPOZ_XANCB RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|21109748|gb|AAM38237.1| RNA polymerase omega subunit [Xanthomonas axonopodis pv. citri
str. 306]
gi|21114486|gb|AAM42518.1| RNA polymerase omega subunit [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66572621|gb|AAY48031.1| RNA polymerase omega subunit [Xanthomonas campestris pv.
campestris str. 8004]
gi|78037497|emb|CAJ25242.1| RNA polymerase omega subunit [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|167732092|emb|CAP50284.1| DNA-directed RNA polymerase omega subunit [Xanthomonas campestris
pv. campestris]
gi|325535664|gb|EGD07505.1| DNA-directed RNA polymerase subunit omega [Xanthomonas
vesicatoria ATCC 35937]
gi|325541738|gb|EGD13256.1| DNA-directed RNA polymerase subunit omega [Xanthomonas perforans
91-118]
gi|325547236|gb|EGD18309.1| DNA-directed RNA polymerase subunit omega [Xanthomonas gardneri
ATCC 19865]
Length = 99
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV--GKDKNTVVALREIASGTL 58
MAR TVEDC++ V+NRF LV++AS R R L+ G +P ++ DK TV+ALREIA+ +
Sbjct: 1 MARITVEDCLEVVNNRFELVMMASKRARQLANGVQPLIENADASDKPTVMALREIAARRI 60
Query: 59 SPDDLEE 65
++E
Sbjct: 61 DNALIDE 67
>gi|256831235|ref|YP_003159963.1| DNA-directed RNA polymerase subunit omega [Desulfomicrobium
baculatum DSM 4028]
gi|256580411|gb|ACU91547.1| DNA-directed RNA polymerase, omega subunit [Desulfomicrobium
baculatum DSM 4028]
Length = 76
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 31/61 (50%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++KV+NRFL+V +A R + +G +P V K V ALREIA G + P
Sbjct: 1 MARITVEDCLEKVNNRFLIVQMAIKRVKQYHEGYEPLVASKN-KEIVTALREIAEGKVLP 59
Query: 61 D 61
D
Sbjct: 60 D 60
>gi|167622331|ref|YP_001672625.1| DNA-directed RNA polymerase subunit omega [Shewanella
halifaxensis HAW-EB4]
gi|189044001|sp|B0TPU5|RPOZ_SHEHH RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|167352353|gb|ABZ74966.1| DNA-directed RNA polymerase, omega subunit [Shewanella
halifaxensis HAW-EB4]
Length = 93
Score = 81.1 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED ++++ NRF ++L+A+ R R ++ QG P V+ DK TV+ALREI G ++
Sbjct: 1 MARVTVEDAVNQIGNRFDMILVAARRARQIAVQGKDPMVEEENDKPTVIALREIELGLVT 60
Query: 60 PDDLEED 66
D L+ D
Sbjct: 61 ADTLDAD 67
>gi|170728901|ref|YP_001762927.1| DNA-directed RNA polymerase subunit omega [Shewanella woodyi ATCC
51908]
gi|226703177|sp|B1KLV2|RPOZ_SHEWM RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|169814248|gb|ACA88832.1| DNA-directed RNA polymerase, omega subunit [Shewanella woodyi
ATCC 51908]
Length = 94
Score = 81.1 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED ++++ NRF ++L+A+ R R ++ QG P V+ DK TV+ALREI G ++
Sbjct: 1 MARVTVEDAVEQIGNRFDMILVAARRARQIAVQGKDPMVEEENDKPTVIALREIELGLVT 60
Query: 60 PDDLEED 66
D L+ D
Sbjct: 61 ADTLDAD 67
>gi|301165514|emb|CBW25085.1| DNA-directed RNA polymerase omega chain [Bacteriovorax marinus
SJ]
Length = 70
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR T+EDC+++V+NR+ LV LA R + L +G++ V K+K V ALREIA+G +
Sbjct: 1 MARITIEDCLERVENRYELVHLAVKRVKQLREGSESLV-RSKNKEVVTALREIAAGKVKH 59
Query: 61 DDLEE 65
+ E
Sbjct: 60 APVSE 64
>gi|22124022|ref|NP_667445.1| DNA-directed RNA polymerase subunit omega [Yersinia pestis KIM
10]
gi|45439905|ref|NP_991444.1| DNA-directed RNA polymerase subunit omega [Yersinia pestis biovar
Microtus str. 91001]
gi|108809494|ref|YP_653410.1| DNA-directed RNA polymerase subunit omega [Yersinia pestis
Antiqua]
gi|108813971|ref|YP_649738.1| DNA-directed RNA polymerase subunit omega [Yersinia pestis
Nepal516]
gi|150260897|ref|ZP_01917625.1| DNA-directed RNA polymerase, omega chain [Yersinia pestis
CA88-4125]
gi|162421700|ref|YP_001604685.1| DNA-directed RNA polymerase subunit omega [Yersinia pestis
Angola]
gi|165926070|ref|ZP_02221902.1| DNA-directed RNA polymerase, omega subunit [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165936199|ref|ZP_02224768.1| DNA-directed RNA polymerase, omega subunit [Yersinia pestis
biovar Orientalis str. IP275]
gi|166011472|ref|ZP_02232370.1| DNA-directed RNA polymerase, omega subunit [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166213670|ref|ZP_02239705.1| DNA-directed RNA polymerase, omega subunit [Yersinia pestis
biovar Antiqua str. B42003004]
gi|167402119|ref|ZP_02307596.1| DNA-directed RNA polymerase, omega subunit [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167418693|ref|ZP_02310446.1| DNA-directed RNA polymerase, omega subunit [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167426674|ref|ZP_02318427.1| DNA-directed RNA polymerase, omega subunit [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|167468215|ref|ZP_02332919.1| DNA-directed RNA polymerase, omega subunit [Yersinia pestis FV-1]
gi|218927260|ref|YP_002345135.1| DNA-directed RNA polymerase subunit omega [Yersinia pestis CO92]
gi|229836150|ref|ZP_04456318.1| RNA polymerase, omega subunit [Yersinia pestis Pestoides A]
gi|229839888|ref|ZP_04460047.1| RNA polymerase, omega subunit [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229841970|ref|ZP_04462125.1| RNA polymerase, omega subunit [Yersinia pestis biovar Orientalis
str. India 195]
gi|229904501|ref|ZP_04519612.1| RNA polymerase, omega subunit [Yersinia pestis Nepal516]
gi|270488501|ref|ZP_06205575.1| DNA-directed RNA polymerase, omega subunit [Yersinia pestis KIM
D27]
gi|20978698|sp|Q8ZJQ3|RPOZ_YERPE RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|123372042|sp|Q1C257|RPOZ_YERPA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|123372829|sp|Q1CCZ2|RPOZ_YERPN RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703198|sp|A9R664|RPOZ_YERPG RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|21956765|gb|AAM83696.1|AE013610_8 RNA polymerase, omega subunit [Yersinia pestis KIM 10]
gi|45434760|gb|AAS60321.1| DNA-directed RNA polymerase, omega chain [Yersinia pestis biovar
Microtus str. 91001]
gi|108777619|gb|ABG20138.1| DNA-directed RNA polymerase, omega chain [Yersinia pestis
Nepal516]
gi|108781407|gb|ABG15465.1| DNA-directed RNA polymerase, omega chain [Yersinia pestis
Antiqua]
gi|115345871|emb|CAL18729.1| DNA-directed RNA polymerase, omega chain [Yersinia pestis CO92]
gi|149290305|gb|EDM40382.1| DNA-directed RNA polymerase, omega chain [Yersinia pestis
CA88-4125]
gi|162354515|gb|ABX88463.1| DNA-directed RNA polymerase, omega subunit [Yersinia pestis
Angola]
gi|165915813|gb|EDR34421.1| DNA-directed RNA polymerase, omega subunit [Yersinia pestis
biovar Orientalis str. IP275]
gi|165921930|gb|EDR39107.1| DNA-directed RNA polymerase, omega subunit [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165989618|gb|EDR41919.1| DNA-directed RNA polymerase, omega subunit [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166205072|gb|EDR49552.1| DNA-directed RNA polymerase, omega subunit [Yersinia pestis
biovar Antiqua str. B42003004]
gi|166962687|gb|EDR58708.1| DNA-directed RNA polymerase, omega subunit [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167048494|gb|EDR59902.1| DNA-directed RNA polymerase, omega subunit [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167054363|gb|EDR64180.1| DNA-directed RNA polymerase, omega subunit [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|229678619|gb|EEO74724.1| RNA polymerase, omega subunit [Yersinia pestis Nepal516]
gi|229690280|gb|EEO82334.1| RNA polymerase, omega subunit [Yersinia pestis biovar Orientalis
str. India 195]
gi|229696254|gb|EEO86301.1| RNA polymerase, omega subunit [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229706598|gb|EEO92604.1| RNA polymerase, omega subunit [Yersinia pestis Pestoides A]
gi|270337005|gb|EFA47782.1| DNA-directed RNA polymerase, omega subunit [Yersinia pestis KIM
D27]
gi|320013393|gb|ADV96964.1| RNA polymerase, omega subunit [Yersinia pestis biovar Medievalis
str. Harbin 35]
Length = 91
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R + G V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQIQSGGKDALVPEENDKVTVIALREIEEGLIT 60
Query: 60 PDDLE 64
L+
Sbjct: 61 NQILD 65
>gi|157803576|ref|YP_001492125.1| DNA-directed RNA polymerase subunit omega [Rickettsia canadensis
str. McKiel]
gi|166230354|sp|A8EYA7|RPOZ_RICCK RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|157784839|gb|ABV73340.1| DNA-directed RNA polymerase omega subunit [Rickettsia canadensis
str. McKiel]
Length = 127
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAK--PTVDVGKDKNTVVALREIASGTL 58
MAR T EDC + +RF LV+LA+ + L+ + + +DK V+ALR IA+G +
Sbjct: 1 MARVTAEDCNKIIPDRFRLVVLATRYAKLLNYKVETSYSKKEKRDKPPVIALRRIAAGKV 60
Query: 59 SPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEG 105
S LE+D I+SL I EP + ++ + K + L + E
Sbjct: 61 SVAQLEQDLINSLCTRNII-EPLANQDDLEDVEEKFDYLPEVYVGED 106
>gi|78355294|ref|YP_386743.1| DNA-directed RNA polymerase subunit omega [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
gi|115305582|sp|Q316U8|RPOZ_DESDG RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|78217699|gb|ABB37048.1| DNA-directed RNA polymerase subunit omega [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 73
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC+++V NRFLLV +A R + +G +P V K V ALREIA+ + P
Sbjct: 1 MARITVEDCMERVSNRFLLVQMAIKRVKQFREGYEPLVPSKN-KEIVTALREIAAAKVVP 59
Query: 61 DD 62
+D
Sbjct: 60 ED 61
>gi|88607525|ref|YP_505109.1| DNA-directed RNA polymerase, omega subunit [Anaplasma
phagocytophilum HZ]
gi|115305572|sp|Q2GKJ2|RPOZ_ANAPZ RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|88598588|gb|ABD44058.1| DNA-directed RNA polymerase, omega subunit [Anaplasma
phagocytophilum HZ]
Length = 135
Score = 80.7 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 37/63 (58%)
Query: 15 NRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEEDFIHSLQKH 74
NRF LV+LAS R LS GA VD DKNTVVALREIAS L + + +K+
Sbjct: 15 NRFKLVILASQRAHELSSGAATLVDRQGDKNTVVALREIASNQLDLSTVFGLAVQRCRKY 74
Query: 75 VEI 77
+E
Sbjct: 75 LEE 77
>gi|294142848|ref|YP_003558826.1| DNA-directed RNA polymerase, omega subunit [Shewanella violacea
DSS12]
gi|41688653|sp|Q7WZE4|RPOZ_SHEVD RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|32562921|dbj|BAC79234.1| probable DNA-directed RNA polymerase omega subunit [Shewanella
violacea]
gi|293329317|dbj|BAJ04048.1| DNA-directed RNA polymerase, omega subunit [Shewanella violacea
DSS12]
Length = 94
Score = 80.7 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED ++++ NRF ++L+A+ R R ++ QG P V+ DK TV+ALREI G ++
Sbjct: 1 MARVTVEDAVNQIGNRFDMILVAARRARQIAVQGKDPMVEEENDKPTVIALREIELGLVT 60
Query: 60 PDDLEED 66
D L+ D
Sbjct: 61 ADTLDAD 67
>gi|266618719|pdb|3IYD|E Chain E, Three-Dimensional Em Structure Of An Intact Activator-
Dependent Transcription Initiation Complex
Length = 90
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 2 ARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLSP 60
AR TV+D ++K+ NRF LVL+A+ R R + G P V DK TV+ALREI G ++
Sbjct: 1 ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINN 60
Query: 61 DDLE 64
L+
Sbjct: 61 QILD 64
>gi|285017593|ref|YP_003375304.1| DNA-directed RNA polymerase omega subunit protein [Xanthomonas
albilineans GPE PC73]
gi|283472811|emb|CBA15316.1| probable dna-directed rna polymerase omega subunit protein
[Xanthomonas albilineans]
Length = 99
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV--GKDKNTVVALREIASGTL 58
MAR TVEDC++ V+NRF LV++AS R R L+ G + T+D DK TV+ALREIA+ +
Sbjct: 1 MARITVEDCLEVVNNRFELVMMASKRARQLANGVQATLDNTDSSDKPTVLALREIAARKI 60
Query: 59 SPDDLEE 65
+++
Sbjct: 61 DNALIDQ 67
>gi|221134066|ref|ZP_03560371.1| DNA-directed RNA polymerase, omega subunit [Glaciecola sp.
HTCC2999]
Length = 89
Score = 80.7 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 38/80 (47%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED ++++ NRF LVL+A+ R R ++ +G +P VD+G DK TVVALREI ++
Sbjct: 1 MARVTVEDAVEQIGNRFDLVLVAAKRARQIATEGKEPMVDMGNDKPTVVALREIEQQLVT 60
Query: 60 PDDLEEDFIHSLQKHVEIDE 79
D LE I Q E E
Sbjct: 61 ADSLEAAEIAE-QHQAEQAE 79
>gi|319786151|ref|YP_004145626.1| DNA-directed RNA polymerase subunit omega [Pseudoxanthomonas
suwonensis 11-1]
gi|317464663|gb|ADV26395.1| DNA-directed RNA polymerase, omega subunit [Pseudoxanthomonas
suwonensis 11-1]
Length = 99
Score = 80.3 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 33/67 (49%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVG--KDKNTVVALREIASGTL 58
MAR TVEDC++ VDNRF LV++A+ R R L+ G T++ DK TV+ALREIA+ T+
Sbjct: 1 MARITVEDCLEVVDNRFELVMMAAKRARQLANGVPATIENEDGDDKPTVLALREIAARTV 60
Query: 59 SPDDLEE 65
++E
Sbjct: 61 DNALIDE 67
>gi|126172607|ref|YP_001048756.1| DNA-directed RNA polymerase subunit omega [Shewanella baltica
OS155]
gi|152998904|ref|YP_001364585.1| DNA-directed RNA polymerase subunit omega [Shewanella baltica
OS185]
gi|160873484|ref|YP_001552800.1| DNA-directed RNA polymerase subunit omega [Shewanella baltica
OS195]
gi|217971569|ref|YP_002356320.1| DNA-directed RNA polymerase subunit omega [Shewanella baltica
OS223]
gi|304411695|ref|ZP_07393307.1| DNA-directed RNA polymerase, omega subunit [Shewanella baltica
OS183]
gi|307306253|ref|ZP_07585998.1| DNA-directed RNA polymerase, omega subunit [Shewanella baltica
BA175]
gi|166230359|sp|A3CZH4|RPOZ_SHEB5 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166230360|sp|A6WI83|RPOZ_SHEB8 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|189044000|sp|A9KXX5|RPOZ_SHEB9 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|254809258|sp|B8E4F6|RPOZ_SHEB2 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|125995812|gb|ABN59887.1| DNA-directed RNA polymerase, omega subunit [Shewanella baltica
OS155]
gi|151363522|gb|ABS06522.1| DNA-directed RNA polymerase, omega subunit [Shewanella baltica
OS185]
gi|160859006|gb|ABX47540.1| DNA-directed RNA polymerase, omega subunit [Shewanella baltica
OS195]
gi|217496704|gb|ACK44897.1| DNA-directed RNA polymerase, omega subunit [Shewanella baltica
OS223]
gi|304349883|gb|EFM14289.1| DNA-directed RNA polymerase, omega subunit [Shewanella baltica
OS183]
gi|306911126|gb|EFN41553.1| DNA-directed RNA polymerase, omega subunit [Shewanella baltica
BA175]
gi|315265713|gb|ADT92566.1| DNA-directed RNA polymerase, omega subunit [Shewanella baltica
OS678]
Length = 92
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED ++++ NRF ++L+A+ R R ++ QG P V+ DK TV+ALREI G ++
Sbjct: 1 MARVTVEDAVEQIGNRFDMILVAARRARQIAVQGKDPMVEEMNDKPTVIALREIELGLVN 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSDFSW 91
L+ D Q E + + ++
Sbjct: 61 AHTLDAD---ERQTVREREAAEIAAVSAIAEG 89
>gi|119947226|ref|YP_944906.1| DNA-directed RNA polymerase, omega subunit [Psychromonas
ingrahamii 37]
gi|166230349|sp|A1T0P2|RPOZ_PSYIN RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|119865830|gb|ABM05307.1| DNA-directed RNA polymerase, omega subunit [Psychromonas
ingrahamii 37]
Length = 91
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED ++ V NRF L+L+AS R R L+ QG P VD DK TV+ALREI ++
Sbjct: 1 MARVTVEDAVNVVGNRFDLILMASRRARQLATQGKTPLVDPENDKPTVIALREIEENLIT 60
Query: 60 PDDLE-EDFIHSLQKHV 75
+ ++ +D +K
Sbjct: 61 NELMDIQDRQEKHEKQT 77
>gi|326797343|ref|YP_004315163.1| DNA-directed RNA polymerase subunit omega [Marinomonas
mediterranea MMB-1]
gi|326548107|gb|ADZ93327.1| DNA-directed RNA polymerase subunit omega [Marinomonas
mediterranea MMB-1]
Length = 75
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC++ VDNRF LV++A+ R R L+ G+ + V + +DK TVVALREIA ++
Sbjct: 1 MARVTVEDCLENVDNRFQLVMVAAKRARQLATGSEEAKVALEEDKMTVVALREIAENLVN 60
Query: 60 PDDLEEDFIH 69
++++ +
Sbjct: 61 AGNVDKPAVE 70
>gi|91205808|ref|YP_538163.1| DNA-directed RNA polymerase subunit omega [Rickettsia bellii
RML369-C]
gi|157827064|ref|YP_001496128.1| DNA-directed RNA polymerase subunit omega [Rickettsia bellii OSU
85-389]
gi|122425415|sp|Q1RHU0|RPOZ_RICBR RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|166230353|sp|A8GW64|RPOZ_RICB8 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|91069352|gb|ABE05074.1| DNA-directed RNA polymerase omega chain [Rickettsia bellii
RML369-C]
gi|157802368|gb|ABV79091.1| DNA-directed RNA polymerase subunit omega [Rickettsia bellii OSU
85-389]
Length = 126
Score = 80.3 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVD--VGKDKNTVVALREIASGTL 58
MAR T EDC + +RF LV+ A+ + L+ + +DK V+ALR IASG +
Sbjct: 1 MARITTEDCSKVIPDRFQLVIYATRYAKLLNYKVETNQSKKEKRDKPPVIALRRIASGKV 60
Query: 59 SPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEG 105
S LE+DFI+SL+ I EP + S+ K E L + E
Sbjct: 61 SVAQLEQDFINSLRTRSRI-EPIVEQDESEDLEEKFEYLPEVYIGED 106
>gi|209693824|ref|YP_002261752.1| DNA-directed RNA polymerase subunit omega [Aliivibrio salmonicida
LFI1238]
gi|226699538|sp|B6EPJ3|RPOZ_ALISL RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|208007775|emb|CAQ77896.1| DNA-directed RNA polymerase, omega chain [Aliivibrio salmonicida
LFI1238]
Length = 90
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL++S R R L G V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDTVEKIGNRFDLVLVSSRRARQLQTGGKDALVPEENDKPTVIALREIEEGLIT 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSD 88
D L+ Q+ E D + +S
Sbjct: 61 KDLLDAR---ERQEQQEQDAAELAAVSSI 86
>gi|85858122|ref|YP_460324.1| RNA polymerase subunit [Syntrophus aciditrophicus SB]
gi|108884785|sp|Q2LQ83|RPOZ_SYNAS RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|85721213|gb|ABC76156.1| RNA polymerase subunit [Syntrophus aciditrophicus SB]
Length = 91
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTL 58
MAR TVED + NRF LVLLA R++ L +GA+P +V ++ V ALREIA +
Sbjct: 1 MARITVEDALKVAGNRFALVLLAVQRSKQLLRGARPLTNVRNNREIVAALREIADNKV 58
>gi|329296826|ref|ZP_08254162.1| DNA-directed RNA polymerase subunit omega [Plautia stali
symbiont]
Length = 91
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++KV NRF LVL+A+ R R + G P V DK TV+ALREI ++
Sbjct: 1 MARVTVQDAVEKVGNRFDLVLVAARRARQMQVGGKDPLVPEENDKATVIALREIEEDLIT 60
Query: 60 PDDLE 64
L+
Sbjct: 61 NQILD 65
>gi|163750722|ref|ZP_02157958.1| DNA-directed RNA polymerase omega subunit [Shewanella benthica
KT99]
gi|161329566|gb|EDQ00558.1| DNA-directed RNA polymerase omega subunit [Shewanella benthica
KT99]
Length = 94
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED ++++ NRF ++L+A+ R R ++ +G P V+ DK TV+ALREI G ++
Sbjct: 1 MARVTVEDAVNQIGNRFDMILVAARRARQIAMEGKTPMVEEENDKPTVIALREIELGLVT 60
Query: 60 PDDLEED 66
+ L+ D
Sbjct: 61 AETLDAD 67
>gi|315633795|ref|ZP_07889085.1| DNA-directed RNA polymerase subunit omega [Aggregatibacter segnis
ATCC 33393]
gi|315477837|gb|EFU68579.1| DNA-directed RNA polymerase subunit omega [Aggregatibacter segnis
ATCC 33393]
Length = 88
Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF L+L A+ R R L A +P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLILTAARRARQLQLHAREPLVPEDNDKPTVIALREIEKGLIN 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSDFS 90
D L+ Q+H+ ++ + +
Sbjct: 61 NDILDA---QERQEHLAMERAEVNAVSLLSE 88
>gi|152978697|ref|YP_001344326.1| DNA-directed RNA polymerase subunit omega [Actinobacillus
succinogenes 130Z]
gi|171704305|sp|A6VN44|RPOZ_ACTSZ RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|150840420|gb|ABR74391.1| DNA-directed RNA polymerase, omega subunit [Actinobacillus
succinogenes 130Z]
Length = 88
Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF L+L A+ R R L +P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLILTAARRARQLQLNHREPLVPEDNDKPTVIALREIEKGLIN 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPT 84
D ++ Q + + +
Sbjct: 61 NDIMDA---QERQDALMQHQAEDAA 82
>gi|91794781|ref|YP_564432.1| DNA-directed RNA polymerase subunit omega [Shewanella
denitrificans OS217]
gi|123165717|sp|Q12IL7|RPOZ_SHEDO RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|91716783|gb|ABE56709.1| DNA-directed RNA polymerase, omega subunit [Shewanella
denitrificans OS217]
Length = 92
Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED +D++ NRF ++L+A+ R R ++ QG P VD DK TV+ALREI G ++
Sbjct: 1 MARVTVEDAVDQIGNRFDMILVAARRARQIAVQGKDPMVDEMNDKPTVIALREIELGLVN 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENS 87
L+ D +++ +
Sbjct: 61 ATTLDADERQTVRDREAAEVAAVSAIAE 88
>gi|32491154|ref|NP_871408.1| hypothetical protein WGLp405 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|31340410|sp|Q8D2E9|RPOZ_WIGBR RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|25166361|dbj|BAC24551.1| rpoZ [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 62
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/59 (52%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQ-GAKPTVDVGKDKNTVVALREIASGTL 58
MAR TV+D ++K+ NRF LVL+AS R R + G P VD DK TV+ALREI G +
Sbjct: 1 MARITVQDAVEKIGNRFDLVLVASQRAREMQIFGKSPMVDKENDKYTVIALREIEQGLI 59
>gi|145601106|ref|YP_001165182.1| DNA-directed RNA polymerase, omega chain [Yersinia pestis
Pestoides F]
gi|166230375|sp|A4TSE7|RPOZ_YERPP RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|145212802|gb|ABP42209.1| DNA-directed RNA polymerase, omega chain [Yersinia pestis
Pestoides F]
Length = 88
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL+A+ R R + G V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQIQSGGKDALVPEENDKVTVIALREIEEGLIT 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSDFSW 91
L+ +++ E + +
Sbjct: 61 NQILD------VRERQEQQAAEIQAVTAIAEG 86
>gi|154706163|ref|YP_001425111.1| DNA-directed RNA polymerase omega chain [Coxiella burnetii Dugway
5J108-111]
gi|189043979|sp|A9KGR6|RPOZ_COXBN RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|154355449|gb|ABS76911.1| DNA-directed RNA polymerase omega chain [Coxiella burnetii Dugway
5J108-111]
Length = 97
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/57 (56%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHL-SQGAKPTVDVGKDKNTVVALREIASG 56
MAR TVEDC++ V+NRF LVL A+ R L GA+P V DK V+ALREIA+G
Sbjct: 1 MARVTVEDCLEHVENRFDLVLKAAKRAHILELGGAEPMVPRDNDKPAVLALREIAAG 57
>gi|260913048|ref|ZP_05919530.1| DNA-directed RNA polymerase subunit omega [Pasteurella dagmatis
ATCC 43325]
gi|260632635|gb|EEX50804.1| DNA-directed RNA polymerase subunit omega [Pasteurella dagmatis
ATCC 43325]
Length = 90
Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF L+L A+ R R L +P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLILTAARRARQLQLHIREPLVPEDNDKPTVIALREIEKGLIN 60
Query: 60 PDDL 63
D +
Sbjct: 61 NDIM 64
>gi|308272736|emb|CBX29340.1| DNA-directed RNA polymerase subunit omega [uncultured
Desulfobacterium sp.]
Length = 86
Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 42/58 (72%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTL 58
MAR T+EDC+ +V NRFLLV + + R R + +G++ V K+++ V+ALREIA+G +
Sbjct: 1 MARITIEDCMKRVPNRFLLVNMVARRVRQIREGSEYLVSAPKNEDIVIALREIAAGKI 58
>gi|59710712|ref|YP_203488.1| DNA-directed RNA polymerase subunit omega [Vibrio fischeri ES114]
gi|197334105|ref|YP_002154874.1| DNA-directed RNA polymerase, omega subunit [Vibrio fischeri MJ11]
gi|75431904|sp|Q5E8P6|RPOZ_VIBF1 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703192|sp|B5FFD6|RPOZ_VIBFM RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|59478813|gb|AAW84600.1| RNA polymerase, omega subunit [Vibrio fischeri ES114]
gi|197315595|gb|ACH65042.1| DNA-directed RNA polymerase, omega subunit [Vibrio fischeri MJ11]
Length = 90
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF LVL++S R R + G V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLISSRRARQMQTGGKDALVPEENDKTTVIALREIEEGLIT 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSD 88
+ L+ Q+ E D + +S
Sbjct: 61 KELLDAR---ERQEQQEQDAAELAAVSSI 86
>gi|330890921|gb|EGH23582.1| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae
pv. mori str. 301020]
Length = 83
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 5 TVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLSPDDL 63
TVEDC++ VDNRF LV+L++ R R L+ G +P + DK TV+ALREIA+G + +
Sbjct: 1 TVEDCLEHVDNRFELVMLSTKRARQLATGGKEPKLAWENDKPTVMALREIAAGLMDYAVI 60
Query: 64 EEDFIHSLQKHVEIDEPDSPT 84
E I + E +S
Sbjct: 61 AEAEIVEDEPLFAAFEDESNE 81
>gi|261868132|ref|YP_003256054.1| DNA-directed RNA polymerase subunit omega [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|293391659|ref|ZP_06635993.1| DNA-directed RNA polymerase, omega subunit [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|261413464|gb|ACX82835.1| DNA-directed RNA polymerase, omega subunit [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|290952193|gb|EFE02312.1| DNA-directed RNA polymerase, omega subunit [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 88
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF L+L A+ R R L +P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLILTAARRARQLQLHTREPLVPEDNDKPTVIALREIEKGLIN 60
Query: 60 PDDLE 64
+ L+
Sbjct: 61 NEILD 65
>gi|218887383|ref|YP_002436704.1| DNA-directed RNA polymerase subunit omega [Desulfovibrio vulgaris
str. 'Miyazaki F']
gi|226703121|sp|B8DQW7|RPOZ_DESVM RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|218758337|gb|ACL09236.1| DNA-directed RNA polymerase, omega subunit [Desulfovibrio
vulgaris str. 'Miyazaki F']
Length = 75
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC ++VDNRFLLV +A R +G + VD K V ALREIA+G + P
Sbjct: 1 MARITVEDCQERVDNRFLLVQMAIKRVHQYREGYEALVDSRN-KEVVTALREIAAGKVLP 59
Query: 61 DD 62
D+
Sbjct: 60 DE 61
>gi|251793131|ref|YP_003007859.1| DNA-directed RNA polymerase subunit omega [Aggregatibacter
aphrophilus NJ8700]
gi|247534526|gb|ACS97772.1| DNA-directed RNA polymerase, omega subunit [Aggregatibacter
aphrophilus NJ8700]
Length = 88
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF L+L A+ R R L +P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLILTAARRARQLQLHTREPLVPEDNDKPTVIALREIEKGLIN 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSDFS 90
+ L+ Q+H+ + + +
Sbjct: 61 NEILDA---QERQEHLAHERVEVSAVSLLSE 88
>gi|33152903|ref|NP_874256.1| DNA-directed RNA polymerase subunit omega [Haemophilus ducreyi
35000HP]
gi|41688647|sp|Q7VKI2|RPOZ_HAEDU RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|33149128|gb|AAP96645.1| RNA polymerase omega subunit [Haemophilus ducreyi 35000HP]
Length = 101
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV++ DK+ NRF L+L A+ R R L +P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQEAADKIGNRFDLILTAARRARQLQLHVREPLVPEENDKPTVIALREIEKGLIN 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSF 99
+++ L+ + + + E F F
Sbjct: 61 GSIMDQ-----LENSDAVRQEVAEQEAISFLTDIQTNAYF 95
>gi|190575690|ref|YP_001973535.1| DNA-directed RNA polymerase subunit omega [Stenotrophomonas
maltophilia K279a]
gi|194367031|ref|YP_002029641.1| DNA-directed RNA polymerase subunit omega [Stenotrophomonas
maltophilia R551-3]
gi|254524548|ref|ZP_05136603.1| RNA polymerase omega subunit [Stenotrophomonas sp. SKA14]
gi|226703181|sp|B4STZ5|RPOZ_STRM5 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703182|sp|B2FT05|RPOZ_STRMK RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|190013612|emb|CAQ47247.1| putative DNA-directed RNA polymerase [Stenotrophomonas
maltophilia K279a]
gi|194349835|gb|ACF52958.1| DNA-directed RNA polymerase, omega subunit [Stenotrophomonas
maltophilia R551-3]
gi|219722139|gb|EED40664.1| RNA polymerase omega subunit [Stenotrophomonas sp. SKA14]
Length = 99
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 33/67 (49%), Positives = 47/67 (70%), Gaps = 2/67 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVG--KDKNTVVALREIASGTL 58
MAR TVEDC++ V+NRF LV++AS R R L+ G + T+D +DK TV+ALREIA+ +
Sbjct: 1 MARITVEDCLEVVNNRFELVMMASKRARQLANGVQATLDNSETEDKPTVLALREIAARKI 60
Query: 59 SPDDLEE 65
++E
Sbjct: 61 DNALIDE 67
>gi|149922662|ref|ZP_01911089.1| DNA-directed RNA polymerase, omega subunit [Plesiocystis pacifica
SIR-1]
gi|149816459|gb|EDM75958.1| DNA-directed RNA polymerase, omega subunit [Plesiocystis pacifica
SIR-1]
Length = 168
Score = 77.6 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQG-AKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVEDC+++V NRF L +LAS R R LS+G V+ K+ VVALRE+A G +
Sbjct: 1 MARVTVEDCLEQVPNRFALTVLASRRARALSEGKGTAQVESDN-KSGVVALREVAKGVVR 59
Query: 60 PDDLEEDFIHSL 71
+ E+ I
Sbjct: 60 YTENVEETIKGY 71
>gi|113461599|ref|YP_719668.1| DNA-directed RNA polymerase subunit omega [Haemophilus somnus
129PT]
gi|170718697|ref|YP_001783889.1| DNA-directed RNA polymerase subunit omega [Haemophilus somnus
2336]
gi|123132291|sp|Q0I5L9|RPOZ_HAES1 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|189043986|sp|B0URZ0|RPOZ_HAES2 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|112823642|gb|ABI25731.1| DNA-directed RNA polymerase subunit omega [Haemophilus somnus
129PT]
gi|168826826|gb|ACA32197.1| DNA-directed RNA polymerase, omega subunit [Haemophilus somnus
2336]
Length = 90
Score = 77.2 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++KV NRF L+L A+ R R L +P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKVGNRFDLILTAARRARELQLHKREPLVPEDNDKPTVIALREIEKGLIN 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWH 92
D + H ++ +E + + T + + +
Sbjct: 61 NDIMNA---HERREALEQETAELNTISLLYQNN 90
>gi|29653653|ref|NP_819345.1| DNA-directed RNA polymerase, omega subunit [Coxiella burnetii RSA
493]
gi|153208675|ref|ZP_01946927.1| DNA-directed RNA polymerase, omega subunit [Coxiella burnetii
'MSU Goat Q177']
gi|161830216|ref|YP_001596251.1| DNA-directed RNA polymerase, omega subunit [Coxiella burnetii RSA
331]
gi|165919776|ref|ZP_02219519.1| DNA-directed RNA polymerase, omega subunit [Coxiella burnetii RSA
334]
gi|212213189|ref|YP_002304125.1| DNA-directed RNA polymerase omega chain [Coxiella burnetii
CbuG_Q212]
gi|212218137|ref|YP_002304924.1| DNA-directed RNA polymerase omega chain [Coxiella burnetii
CbuK_Q154]
gi|41688669|sp|Q83EL6|RPOZ_COXBU RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|189043980|sp|A9NB36|RPOZ_COXBR RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703115|sp|B6J5T7|RPOZ_COXB1 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703116|sp|B6J202|RPOZ_COXB2 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|29540915|gb|AAO89859.1| DNA-directed RNA polymerase omega chain [Coxiella burnetii RSA
493]
gi|120575861|gb|EAX32485.1| DNA-directed RNA polymerase, omega subunit [Coxiella burnetii
'MSU Goat Q177']
gi|161762083|gb|ABX77725.1| DNA-directed RNA polymerase, omega subunit [Coxiella burnetii RSA
331]
gi|165916859|gb|EDR35463.1| DNA-directed RNA polymerase, omega subunit [Coxiella burnetii RSA
334]
gi|212011599|gb|ACJ18980.1| DNA-directed RNA polymerase omega chain [Coxiella burnetii
CbuG_Q212]
gi|212012399|gb|ACJ19779.1| DNA-directed RNA polymerase omega chain [Coxiella burnetii
CbuK_Q154]
Length = 97
Score = 77.2 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 32/57 (56%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHL-SQGAKPTVDVGKDKNTVVALREIASG 56
MAR TVEDC++ V+NRF LVL A+ R L GA+P V DK V+ALREIA+G
Sbjct: 1 MARVTVEDCLEHVENRFDLVLKAAKRAHILELGGAEPMVPRDNDKPAVLALREIAAG 57
>gi|258405205|ref|YP_003197947.1| DNA-directed RNA polymerase, omega subunit [Desulfohalobium
retbaense DSM 5692]
gi|257797432|gb|ACV68369.1| DNA-directed RNA polymerase, omega subunit [Desulfohalobium
retbaense DSM 5692]
Length = 73
Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
MAR TVEDC++K++NRFL+ +A R G V K V ALREIA+G + P
Sbjct: 1 MARITVEDCLEKINNRFLVAQMAIRRVEQYRDGYPKLVTSKN-KEVVTALREIAAGEVLP 59
Query: 61 -DDLEEDFIH 69
+ L++ I
Sbjct: 60 NETLDQVAIK 69
>gi|238897835|ref|YP_002923514.1| RNA polymerase, omega subunit [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
gi|259494501|sp|C4K473|RPOZ_HAMD5 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|229465592|gb|ACQ67366.1| RNA polymerase, omega subunit [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
Length = 90
Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAK-PTVDVGKDKNTVVALREIASGTLS 59
MAR TV+ ++KV NRF L+L+A HR R L G + V DK TV+ALREI G ++
Sbjct: 1 MARVTVQAAVEKVGNRFKLILVAVHRARLLQSGRENSLVPEENDKVTVIALREIEQGLIT 60
Query: 60 PDDLEEDFIHSLQ 72
L+E+ H Q
Sbjct: 61 ESILKENNQHEDQ 73
>gi|15602786|ref|NP_245858.1| DNA-directed RNA polymerase subunit omega [Pasteurella multocida
subsp. multocida str. Pm70]
gi|13959474|sp|Q9CMB2|RPOZ_PASMU RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|12721240|gb|AAK03005.1| RpoZ [Pasteurella multocida subsp. multocida str. Pm70]
Length = 89
Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+ ++K+ NRF L+L A+ R R L +P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQGAVEKIGNRFDLILTAARRARQLQLHIREPLVPEDNDKPTVIALREIEKGLIN 60
Query: 60 PDDL 63
+ +
Sbjct: 61 NEIM 64
>gi|85711934|ref|ZP_01042989.1| DNA-directed RNA polymerase omega subunit [Idiomarina baltica
OS145]
gi|85694331|gb|EAQ32274.1| DNA-directed RNA polymerase omega subunit [Idiomarina baltica
OS145]
Length = 90
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/65 (53%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TVED +D+V NRF L+LLA+ R R LS QG P V+ +K TV+ALREI G +
Sbjct: 1 MARVTVEDAVDRVGNRFDLILLAARRARQLSVQGKDPLVETKNEKPTVIALREIEQGKID 60
Query: 60 PDDLE 64
D L+
Sbjct: 61 ADRLD 65
>gi|158522233|ref|YP_001530103.1| DNA-directed RNA polymerase, omega subunit [Desulfococcus
oleovorans Hxd3]
gi|158511059|gb|ABW68026.1| DNA-directed RNA polymerase, omega subunit [Desulfococcus
oleovorans Hxd3]
Length = 121
Score = 75.3 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 47/84 (55%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEE 65
+EDC+ KV +RF LV LA+ R R + +G++ V K+++ VVALREIA+G ++ +++
Sbjct: 1 MEDCLRKVPSRFELVHLAAQRVRQIREGSEYLVISPKNEDIVVALREIAAGKITQENMAA 60
Query: 66 DFIHSLQKHVEIDEPDSPTENSDF 89
K + E ++
Sbjct: 61 ALASGFFKADAFENDGISEEIAEE 84
>gi|301156629|emb|CBW16100.1| RNA polymerase, omega subunit [Haemophilus parainfluenzae T3T1]
Length = 88
Score = 74.9 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHL-SQGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF L+L A+ R R L ++P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLILTAARRARQLELHQSEPLVPEDNDKPTVIALREIEKGLIN 60
Query: 60 PDDLE 64
+ ++
Sbjct: 61 QEIMD 65
>gi|52425792|ref|YP_088929.1| DNA-directed RNA polymerase subunit omega [Mannheimia
succiniciproducens MBEL55E]
gi|81609442|sp|Q65RR6|RPOZ_MANSM RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|52307844|gb|AAU38344.1| RpoZ protein [Mannheimia succiniciproducens MBEL55E]
Length = 88
Score = 74.5 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF L+L A+ R R L +P V DK TV+ALREI G +
Sbjct: 1 MARVTVQDAVEKIGNRFDLILTAARRARQLQLHVREPLVPEDNDKPTVIALREIEKGLI- 59
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHK 93
++ I + Q+ E E + N+ +
Sbjct: 60 -----DNNIMNAQERQEALEQEKVELNAVSLLSE 88
>gi|222475036|ref|YP_002563451.1| DNA-directed RNA polymerase omega subunit (rpoZ) [Anaplasma
marginale str. Florida]
gi|254809285|sp|B9KI83|RPOZ_ANAMF RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|222419172|gb|ACM49195.1| DNA-directed RNA polymerase omega subunit (rpoZ) [Anaplasma
marginale str. Florida]
Length = 128
Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 44/91 (48%)
Query: 15 NRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEEDFIHSLQKH 74
NRF LV+LAS R LS GA V DKNTVVALREI L + + ++ +K+
Sbjct: 15 NRFRLVILASQRAHELSSGACTAVARKGDKNTVVALREIVGEQLDLAAVFKLAVNRCRKY 74
Query: 75 VEIDEPDSPTENSDFSWHKPEALSFGQMSEG 105
+E + S P++ ++ +
Sbjct: 75 LEEFTNAREVAAARSSQAAPKSAPGQEIGKS 105
>gi|126209288|ref|YP_001054513.1| DNA-directed RNA polymerase subunit omega [Actinobacillus
pleuropneumoniae L20]
gi|166229340|sp|A3N3C2|RPOZ_ACTP2 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|126098080|gb|ABN74908.1| DNA-directed RNA polymerase omega subunit [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
Length = 91
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV++ DK+ NRF L+L A+ R R L A +P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQEAADKIGNRFDLILTAARRARQLQLHAREPLVPEENDKPTVIALREIEKGLIN 60
Query: 60 PDDLEE 65
+++
Sbjct: 61 GQIMDQ 66
>gi|325577826|ref|ZP_08148101.1| DNA-directed RNA polymerase subunit omega [Haemophilus
parainfluenzae ATCC 33392]
gi|325160571|gb|EGC72697.1| DNA-directed RNA polymerase subunit omega [Haemophilus
parainfluenzae ATCC 33392]
Length = 88
Score = 73.4 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHL-SQGAKPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF L+L A+ R R L ++P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLILTAARRARQLELHQSEPLVPEDNDKPTVIALREIEKGLIN 60
Query: 60 PDDLE 64
+ ++
Sbjct: 61 QEIMD 65
>gi|219871227|ref|YP_002475602.1| DNA-directed RNA polymerase subunit omega [Haemophilus parasuis
SH0165]
gi|254809245|sp|B8F5Q2|RPOZ_HAEPS RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|219691431|gb|ACL32654.1| DNA-directed RNA polymerase subunit omega [Haemophilus parasuis
SH0165]
Length = 93
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF L+L A+ R R L +P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLILTAARRARQLQLHTREPLVAEEGDKPTVIALREIEEGLIN 60
Query: 60 PDDLEED 66
+++
Sbjct: 61 NQIMDQQ 67
>gi|32035105|ref|ZP_00135157.1| COG1758: DNA-directed RNA polymerase, subunit K/omega
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|190151181|ref|YP_001969706.1| DNA-directed RNA polymerase subunit omega [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|303252703|ref|ZP_07338865.1| DNA-directed RNA polymerase subunit omega [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307246756|ref|ZP_07528824.1| DNA-directed RNA polymerase subunit omega [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307248897|ref|ZP_07530908.1| DNA-directed RNA polymerase subunit omega [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|307251431|ref|ZP_07533345.1| DNA-directed RNA polymerase subunit omega [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|307255740|ref|ZP_07537543.1| DNA-directed RNA polymerase subunit omega [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307260192|ref|ZP_07541901.1| DNA-directed RNA polymerase subunit omega [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|307262319|ref|ZP_07543967.1| DNA-directed RNA polymerase subunit omega [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|307264530|ref|ZP_07546114.1| DNA-directed RNA polymerase subunit omega [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|226699536|sp|B3GZ78|RPOZ_ACTP7 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|189916312|gb|ACE62564.1| DNA-directed RNA polymerase omega subunit [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|302648442|gb|EFL78636.1| DNA-directed RNA polymerase subunit omega [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|306852331|gb|EFM84568.1| DNA-directed RNA polymerase subunit omega [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306854592|gb|EFM86784.1| DNA-directed RNA polymerase subunit omega [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306856515|gb|EFM88657.1| DNA-directed RNA polymerase subunit omega [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306861300|gb|EFM93291.1| DNA-directed RNA polymerase subunit omega [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306865737|gb|EFM97616.1| DNA-directed RNA polymerase subunit omega [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306867982|gb|EFM99810.1| DNA-directed RNA polymerase subunit omega [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306870129|gb|EFN01889.1| DNA-directed RNA polymerase subunit omega [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 93
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV++ DK+ NRF L+L A+ R R L A +P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQEAADKIGNRFDLILTAARRARQLQLHAREPLVPEENDKPTVIALREIEKGLIN 60
Query: 60 PDDLEE 65
+++
Sbjct: 61 GQIMDQ 66
>gi|167855382|ref|ZP_02478149.1| DNA-directed RNA polymerase omega subunit [Haemophilus parasuis
29755]
gi|167853530|gb|EDS24777.1| DNA-directed RNA polymerase omega subunit [Haemophilus parasuis
29755]
Length = 93
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF L+L A+ R R L +P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLILTAARRARQLQLHTREPLVAEEGDKPTVIALREIEEGLIN 60
Query: 60 PDDLEED 66
+++
Sbjct: 61 NQIMDQQ 67
>gi|56416671|ref|YP_153745.1| DNA-directed RNA polymerase omega subunit [Anaplasma marginale str.
St. Maries]
gi|254994882|ref|ZP_05277072.1| DNA-directed RNA polymerase omega subunit [Anaplasma marginale str.
Mississippi]
gi|255003016|ref|ZP_05277980.1| DNA-directed RNA polymerase omega subunit [Anaplasma marginale str.
Puerto Rico]
gi|255004140|ref|ZP_05278941.1| DNA-directed RNA polymerase omega subunit [Anaplasma marginale str.
Virginia]
gi|81599169|sp|Q5PB40|RPOZ_ANAMM RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|56387903|gb|AAV86490.1| DNA-directed RNA polymerase omega subunit [Anaplasma marginale str.
St. Maries]
Length = 128
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 43/91 (47%)
Query: 15 NRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEEDFIHSLQKH 74
NRF LV+LAS R LS GA V DKNTVVALREI L + ++ +K+
Sbjct: 15 NRFRLVILASQRAHELSSGACTAVARKGDKNTVVALREIVGEQLDLAAVFRLAVNRCRKY 74
Query: 75 VEIDEPDSPTENSDFSWHKPEALSFGQMSEG 105
+E + S P++ ++ +
Sbjct: 75 LEEFTNAREVAAARSSQAAPKSAPGQEIGKS 105
>gi|190571446|ref|YP_001975804.1| DNA-directed RNA polymerase, omega subunit [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
gi|213018844|ref|ZP_03334652.1| DNA-directed RNA polymerase, omega subunit [Wolbachia
endosymbiont of Culex quinquefasciatus JHB]
gi|226703193|sp|B3CMP5|RPOZ_WOLPP RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|190357718|emb|CAQ55167.1| DNA-directed RNA polymerase, omega subunit [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
gi|212995795|gb|EEB56435.1| DNA-directed RNA polymerase, omega subunit [Wolbachia
endosymbiont of Culex quinquefasciatus JHB]
Length = 130
Score = 72.6 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK---DKNTVVALREIASGT 57
M + VE C+++V NRF LVLLAS RT LS GA V++ K K+T+V+L EIA
Sbjct: 1 MVESIVEKCVEQVHNRFKLVLLASQRTHDLSTGASDPVEMVKFKDHKDTIVSLYEIAEKK 60
Query: 58 LSPDDLEEDFIHSLQKHV 75
++ +L + ++H+
Sbjct: 61 VNTHELFNLLVKRCKEHM 78
>gi|240948209|ref|ZP_04752603.1| DNA-directed RNA polymerase subunit omega [Actinobacillus minor
NM305]
gi|257465281|ref|ZP_05629652.1| DNA-directed RNA polymerase subunit omega [Actinobacillus minor
202]
gi|240297449|gb|EER47975.1| DNA-directed RNA polymerase subunit omega [Actinobacillus minor
NM305]
gi|257450941|gb|EEV24984.1| DNA-directed RNA polymerase subunit omega [Actinobacillus minor
202]
Length = 93
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+ +K+ NRF L+L A+ R R + +P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQAAAEKIGNRFDLILTAARRARQIQLHTREPLVPEEGDKPTVIALREIEEGLIN 60
Query: 60 PDDLEE 65
+ +++
Sbjct: 61 SEIMDQ 66
>gi|307257925|ref|ZP_07539679.1| DNA-directed RNA polymerase subunit omega [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306863572|gb|EFM95501.1| DNA-directed RNA polymerase subunit omega [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
Length = 93
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV++ DK+ NRF L+L A+ R R L A +P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQEAADKIGNRFDLILTAARRARQLQLHAREPLVPEENDKPTVIALREIEKGLIN 60
Query: 60 PDDLEE 65
+++
Sbjct: 61 GQIMDQ 66
>gi|254362255|ref|ZP_04978369.1| DNA-directed RNA polymerase subunit omega [Mannheimia haemolytica
PHL213]
gi|261492913|ref|ZP_05989459.1| DNA-directed RNA polymerase subunit omega [Mannheimia haemolytica
serotype A2 str. BOVINE]
gi|261496737|ref|ZP_05993112.1| DNA-directed RNA polymerase subunit omega [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|153093830|gb|EDN74765.1| DNA-directed RNA polymerase subunit omega [Mannheimia haemolytica
PHL213]
gi|261307576|gb|EEY08904.1| DNA-directed RNA polymerase subunit omega [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261311454|gb|EEY12611.1| DNA-directed RNA polymerase subunit omega [Mannheimia haemolytica
serotype A2 str. BOVINE]
Length = 93
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV++ +K+ NRF L+L+A+ R R L +P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQEAAEKIGNRFDLILIAARRARQLQLHTREPLVPEENDKPTVIALREIEEGLIT 60
Query: 60 PDDLEE 65
D +++
Sbjct: 61 TDIMDQ 66
>gi|303251148|ref|ZP_07337332.1| DNA-directed RNA polymerase subunit omega [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307253510|ref|ZP_07535380.1| DNA-directed RNA polymerase subunit omega [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|302649999|gb|EFL80171.1| DNA-directed RNA polymerase subunit omega [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306859011|gb|EFM91054.1| DNA-directed RNA polymerase subunit omega [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
Length = 93
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV++ DK+ NRF L+L A+ R R L +P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQEAADKIGNRFDLILTAARRARQLQLHVREPLVPEENDKPTVIALREIEKGLIN 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPD 81
+ + +S E+ E +
Sbjct: 61 -GQIMDQLENSDAIQQEVAEQE 81
>gi|42521096|ref|NP_967011.1| DNA-directed RNA polymerase, omega subunit [Wolbachia
endosymbiont of Drosophila melanogaster]
gi|58698257|ref|ZP_00373176.1| DNA-directed RNA polymerase, omega subunit [Wolbachia
endosymbiont of Drosophila ananassae]
gi|99034356|ref|ZP_01314383.1| hypothetical protein Wendoof_01000818 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
gi|225631004|ref|YP_002727795.1| DNA-directed RNA polymerase, omega subunit [Wolbachia sp. wRi]
gi|81652089|sp|Q73FM5|RPOZ_WOLPM RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|254809457|sp|C0R512|RPOZ_WOLWR RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|42410837|gb|AAS14945.1| DNA-directed RNA polymerase, omega subunit [Wolbachia
endosymbiont of Drosophila melanogaster]
gi|58535229|gb|EAL59309.1| DNA-directed RNA polymerase, omega subunit [Wolbachia
endosymbiont of Drosophila ananassae]
gi|225592985|gb|ACN96004.1| DNA-directed RNA polymerase, omega subunit [Wolbachia sp. wRi]
Length = 135
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK---DKNTVVALREIASGT 57
MA + VE CI++V NRF LVLLAS RT L+ GA + K KNT+V+L EIA
Sbjct: 1 MAESIVEKCIERVSNRFKLVLLASQRTHDLNTGASNPIQAAKFKGHKNTIVSLHEIAGKQ 60
Query: 58 LSPDDLEEDFIHSLQKHV 75
+ +L + ++++
Sbjct: 61 VDTHELFSLLVGRCKEYM 78
>gi|71892383|ref|YP_278117.1| DNA-directed RNA polymerase, subunit K/omega [Candidatus
Blochmannia pennsylvanicus str. BPEN]
gi|115305574|sp|Q491W4|RPOZ_BLOPB RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|71796489|gb|AAZ41240.1| DNA-directed RNA polymerase, subunit K/omega [Candidatus
Blochmannia pennsylvanicus str. BPEN]
Length = 63
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV--DVGKDKNTVVALREIASGTL 58
MAR TV+D ++KV N F L+L+A+ R R + G K T+ DK TV+ALREI +
Sbjct: 1 MARITVQDAVEKVGNIFDLILVAARRARQMQIGGKETLITKNNNDKYTVLALREIEEDLI 60
Query: 59 SPD 61
+
Sbjct: 61 TKK 63
>gi|332288969|ref|YP_004419821.1| DNA-directed RNA polymerase subunit omega [Gallibacterium anatis
UMN179]
gi|330431865|gb|AEC16924.1| DNA-directed RNA polymerase subunit omega [Gallibacterium anatis
UMN179]
Length = 90
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV+D ++K+ NRF L+L A+ R R L +P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQDAVEKIGNRFDLILTAARRARELQLHVREPLVPEENDKPTVIALREIEKGLIN 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPE 95
D ++ Q+ + E + + E
Sbjct: 61 NDIMDA------QERHDALEQEHAELQAVSLLADVE 90
>gi|165977263|ref|YP_001652856.1| DNA-directed RNA polymerase subunit omega [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|226699537|sp|B0BSZ8|RPOZ_ACTPJ RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|165877364|gb|ABY70412.1| RNA polymerase omega subunit [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
Length = 93
Score = 71.4 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV++ DK+ NRF L+L A+ R R L +P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQEAADKIGNRFDLILTAARRARQLQLHVREPLVPEENDKPTVIALREIEKGLIN 60
Query: 60 PDDLEE 65
+++
Sbjct: 61 GQIMDQ 66
>gi|156972951|ref|YP_001443858.1| DNA-directed RNA polymerase subunit kappa/omega [Vibrio harveyi
ATCC BAA-1116]
gi|156524545|gb|ABU69631.1| hypothetical protein VIBHAR_00629 [Vibrio harveyi ATCC BAA-1116]
Length = 59
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALR 51
MAR TV+D ++KV NRF LVL+A+ R R + G V DK T + R
Sbjct: 1 MARVTVQDAVEKVGNRFDLVLIAARRARQMQTGGKDALVPEENDKPTDRSTR 52
>gi|167946926|ref|ZP_02534000.1| DNA-directed RNA polymerase, omega subunit [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 75
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 36/53 (67%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEE 65
+DNRF LVL+A+ R R L G +P + DK TV+ALREIA G ++ DLE+
Sbjct: 1 MDNRFDLVLVATKRARQLEHGVEPLLPWENDKPTVMALREIADGLIAGQDLEQ 53
>gi|322515561|ref|ZP_08068542.1| DNA-directed RNA polymerase subunit omega [Actinobacillus ureae
ATCC 25976]
gi|322118364|gb|EFX90630.1| DNA-directed RNA polymerase subunit omega [Actinobacillus ureae
ATCC 25976]
Length = 93
Score = 70.3 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLS 59
MAR TV++ D++ NRF L+L A+ R R L +P V DK TV+ALREI G ++
Sbjct: 1 MARVTVQEAADRIGNRFDLILTAARRARQLQLHVREPLVPEENDKPTVIALREIEKGLIN 60
Query: 60 PDDLEE 65
+++
Sbjct: 61 SQIMDQ 66
>gi|296185416|ref|ZP_06853826.1| DNA-directed RNA polymerase, omega subunit [Clostridium
carboxidivorans P7]
gi|296050250|gb|EFG89674.1| DNA-directed RNA polymerase, omega subunit [Clostridium
carboxidivorans P7]
Length = 72
Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEE 65
V D + K+DNR+ LV + + R R L +GA+P V + K +A+ EI+ G ++ ++E
Sbjct: 10 VVDLLKKIDNRYTLVTMTAKRARQLIEGAEPMVRITSTKPVTIAINEISQGAITYTTVKE 69
>gi|121533707|ref|ZP_01665534.1| DNA-directed RNA polymerase, omega subunit [Thermosinus
carboxydivorans Nor1]
gi|121307698|gb|EAX48613.1| DNA-directed RNA polymerase, omega subunit [Thermosinus
carboxydivorans Nor1]
Length = 68
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLE 64
+DKVD+++ LV+LA+ R R + G P V+ +K +AL E+A G ++ + +
Sbjct: 10 VDKVDSKYTLVVLAAKRAREIMNGEPPLVESKSNKPVTIALEEVAQGKITYERTK 64
>gi|254372577|ref|ZP_04988066.1| DNA-directed RNA polymerase [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570304|gb|EDN35958.1| DNA-directed RNA polymerase [Francisella novicida GA99-3549]
Length = 72
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHL--SQGAKPTVDVGKDKNTVVALREIASGTL 58
MAR TVEDC+DKV+ RF LV+LAS R + + ++ + K+K TVVALREIA +
Sbjct: 1 MARVTVEDCLDKVETRFDLVVLASMRANKILKNGYSESMENDKKEKATVVALREIAESEI 60
Query: 59 SPDDLEEDFIHS 70
+P+ + + I
Sbjct: 61 TPEQILRNEIEG 72
>gi|56707823|ref|YP_169719.1| DNA-directed RNA polymerase omega subunit [Francisella tularensis
subsp. tularensis SCHU S4]
gi|110670294|ref|YP_666851.1| DNA-directed RNA polymerase omega subunit [Francisella tularensis
subsp. tularensis FSC198]
gi|115315203|ref|YP_763926.1| DNA-directed RNA polymerase [Francisella tularensis subsp.
holarctica OSU18]
gi|118497212|ref|YP_898262.1| DNA-directed RNA polymerase, subunit K/omega [Francisella
tularensis subsp. novicida U112]
gi|134302404|ref|YP_001122374.1| DNA-directed RNA polymerase, omega subunit [Francisella
tularensis subsp. tularensis WY96-3418]
gi|156502983|ref|YP_001429048.1| DNA-directed RNA polymerase, omega subunit [Francisella
tularensis subsp. holarctica FTNF002-00]
gi|187932011|ref|YP_001891996.1| DNA-directed RNA polymerase, omega subunit [Francisella
tularensis subsp. mediasiatica FSC147]
gi|194323511|ref|ZP_03057288.1| DNA-directed RNA polymerase, omega subunit [Francisella
tularensis subsp. novicida FTE]
gi|208779005|ref|ZP_03246351.1| DNA-directed RNA polymerase, omega subunit [Francisella novicida
FTG]
gi|254369701|ref|ZP_04985711.1| hypothetical protein FTAG_01026 [Francisella tularensis subsp.
holarctica FSC022]
gi|254370319|ref|ZP_04986324.1| DNA-directed RNA polymerase [Francisella tularensis subsp.
tularensis FSC033]
gi|290953513|ref|ZP_06558134.1| DNA-directed RNA polymerase subunit omega [Francisella tularensis
subsp. holarctica URFT1]
gi|295313205|ref|ZP_06803864.1| DNA-directed RNA polymerase subunit omega [Francisella tularensis
subsp. holarctica URFT1]
gi|81597690|sp|Q5NGX3|RPOZ_FRATT RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|122324800|sp|Q0BKU5|RPOZ_FRATO RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|123359527|sp|Q14IC5|RPOZ_FRAT1 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166230317|sp|A7NDN9|RPOZ_FRATF RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166230318|sp|A0Q5J3|RPOZ_FRATN RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166230319|sp|A4IZA2|RPOZ_FRATW RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703137|sp|B2SDK3|RPOZ_FRATM RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|56604315|emb|CAG45336.1| DNA-directed RNA polymerase omega subunit [Francisella tularensis
subsp. tularensis SCHU S4]
gi|110320627|emb|CAL08719.1| DNA-directed RNA polymerase omega subunit [Francisella tularensis
subsp. tularensis FSC198]
gi|115130102|gb|ABI83289.1| DNA-directed RNA polymerase [Francisella tularensis subsp.
holarctica OSU18]
gi|118423118|gb|ABK89508.1| DNA-directed RNA polymerase, subunit K/omega [Francisella
novicida U112]
gi|134050181|gb|ABO47252.1| DNA-directed RNA polymerase, omega subunit [Francisella
tularensis subsp. tularensis WY96-3418]
gi|151568562|gb|EDN34216.1| DNA-directed RNA polymerase [Francisella tularensis subsp.
tularensis FSC033]
gi|156253586|gb|ABU62092.1| DNA-directed RNA polymerase, omega subunit [Francisella
tularensis subsp. holarctica FTNF002-00]
gi|157122660|gb|EDO66789.1| hypothetical protein FTAG_01026 [Francisella tularensis subsp.
holarctica FSC022]
gi|187712920|gb|ACD31217.1| DNA-directed RNA polymerase, omega subunit [Francisella
tularensis subsp. mediasiatica FSC147]
gi|194322366|gb|EDX19847.1| DNA-directed RNA polymerase, omega subunit [Francisella
tularensis subsp. novicida FTE]
gi|208744805|gb|EDZ91103.1| DNA-directed RNA polymerase, omega subunit [Francisella novicida
FTG]
gi|282158999|gb|ADA78390.1| DNA-directed RNA polymerase, omega subunit [Francisella
tularensis subsp. tularensis NE061598]
gi|328675740|gb|AEB28415.1| DNA-directed RNA polymerase omega subunit [Francisella cf.
novicida 3523]
gi|328676684|gb|AEB27554.1| DNA-directed RNA polymerase omega subunit [Francisella cf.
novicida Fx1]
Length = 72
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHL--SQGAKPTVDVGKDKNTVVALREIASGTL 58
MAR TVEDC+DKV+ RF LV+LAS R + + ++ + K+K TVVALREIA +
Sbjct: 1 MARVTVEDCLDKVETRFDLVVLASMRANKILKNGYSESMENEKKEKATVVALREIAESEI 60
Query: 59 SPDDLEEDFIHS 70
+P+ + + I
Sbjct: 61 TPEQILRNEIEG 72
>gi|254374036|ref|ZP_04989518.1| DNA-directed RNA polymerase [Francisella novicida GA99-3548]
gi|151571756|gb|EDN37410.1| DNA-directed RNA polymerase [Francisella novicida GA99-3548]
Length = 72
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHL--SQGAKPTVDVGKDKNTVVALREIASGTL 58
MAR TVEDC+DKV+ RF LV+LAS R + + ++ + K+K TVVALREIA +
Sbjct: 1 MARVTVEDCLDKVETRFDLVVLASMRANKILKNGYSESMENEKKEKATVVALREIAESEI 60
Query: 59 SPDDLEEDFIHS 70
+ + + + I
Sbjct: 61 TTEQILRNEIEG 72
>gi|224456894|ref|ZP_03665367.1| DNA-directed RNA polymerase, omega subunit [Francisella
tularensis subsp. tularensis MA00-2987]
gi|254874637|ref|ZP_05247347.1| DNA-directed RNA polymerase omega subunit [Francisella tularensis
subsp. tularensis MA00-2987]
gi|254840636|gb|EET19072.1| DNA-directed RNA polymerase omega subunit [Francisella tularensis
subsp. tularensis MA00-2987]
Length = 72
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHL--SQGAKPTVDVGKDKNTVVALREIASGTL 58
MAR TV+DC+DKV+ RF LV+LAS R + + ++ + K+K TVVALREIA +
Sbjct: 1 MARVTVDDCLDKVETRFDLVVLASMRANKILKNGYSESMENEKKEKATVVALREIAESEI 60
Query: 59 SPDDLEEDFIHS 70
+P+ + + I
Sbjct: 61 TPEQILRNEIEG 72
>gi|317121753|ref|YP_004101756.1| DNA-directed RNA polymerase subunit omega [Thermaerobacter
marianensis DSM 12885]
gi|315591733|gb|ADU51029.1| DNA-directed RNA polymerase subunit omega [Thermaerobacter
marianensis DSM 12885]
Length = 76
Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 38/58 (65%)
Query: 3 RTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
R T+++ + KVD+++ LV+LA+ R R L GA+P +D K VAL E+A+G LS
Sbjct: 11 RVTLDELLSKVDSKYTLVVLAARRARQLVDGAEPVIDPQAAKPVTVALEELAAGKLSY 68
>gi|148380467|ref|YP_001255008.1| DNA-directed RNA polymerase, omega subunit [Clostridium botulinum
A str. ATCC 3502]
gi|153933120|ref|YP_001384690.1| DNA-directed RNA polymerase subunit omega [Clostridium botulinum
A str. ATCC 19397]
gi|153934699|ref|YP_001388211.1| DNA-directed RNA polymerase subunit omega [Clostridium botulinum
A str. Hall]
gi|153938038|ref|YP_001391809.1| DNA-directed RNA polymerase subunit omega [Clostridium botulinum
F str. Langeland]
gi|168180604|ref|ZP_02615268.1| DNA-directed RNA polymerase, omega subunit [Clostridium botulinum
NCTC 2916]
gi|168182590|ref|ZP_02617254.1| DNA-directed RNA polymerase, omega subunit [Clostridium botulinum
Bf]
gi|170755900|ref|YP_001782056.1| DNA-directed RNA polymerase subunit omega [Clostridium botulinum
B1 str. Okra]
gi|226949866|ref|YP_002804957.1| DNA-directed RNA polymerase, omega subunit [Clostridium botulinum
A2 str. Kyoto]
gi|237795952|ref|YP_002863504.1| DNA-directed RNA polymerase, omega subunit [Clostridium botulinum
Ba4 str. 657]
gi|166229416|sp|A7FW79|RPOZ_CLOB1 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166229417|sp|A5I4U1|RPOZ_CLOBH RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166229418|sp|A7GG99|RPOZ_CLOBL RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703112|sp|B1IIM4|RPOZ_CLOBK RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|254809274|sp|C1FST3|RPOZ_CLOBJ RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|259494384|sp|C3L0L4|RPOZ_CLOB6 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|148289951|emb|CAL84064.1| putative DNA-directed RNA polymerase omega chain [Clostridium
botulinum A str. ATCC 3502]
gi|152929164|gb|ABS34664.1| DNA-directed RNA polymerase, omega subunit [Clostridium botulinum
A str. ATCC 19397]
gi|152930613|gb|ABS36112.1| DNA-directed RNA polymerase, omega subunit [Clostridium botulinum
A str. Hall]
gi|152933934|gb|ABS39432.1| DNA-directed RNA polymerase, omega subunit [Clostridium botulinum
F str. Langeland]
gi|169121112|gb|ACA44948.1| DNA-directed RNA polymerase, omega subunit [Clostridium botulinum
B1 str. Okra]
gi|182668422|gb|EDT80401.1| DNA-directed RNA polymerase, omega subunit [Clostridium botulinum
NCTC 2916]
gi|182674251|gb|EDT86212.1| DNA-directed RNA polymerase, omega subunit [Clostridium botulinum
Bf]
gi|226841037|gb|ACO83703.1| DNA-directed RNA polymerase, omega subunit [Clostridium botulinum
A2 str. Kyoto]
gi|229261933|gb|ACQ52966.1| DNA-directed RNA polymerase, omega subunit [Clostridium botulinum
Ba4 str. 657]
gi|295319834|gb|ADG00212.1| DNA-directed RNA polymerase, omega subunit [Clostridium botulinum
F str. 230613]
gi|322806780|emb|CBZ04349.1| DNA-directed RNA polymerase omega subunit [Clostridium botulinum
H04402 065]
Length = 72
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEE 65
++KVD+R+ LV + S R+R L GAKP VD+ K VA+ EI G ++ ++E
Sbjct: 14 LEKVDDRYSLVTITSKRSRQLIDGAKPLVDIDSTKPVTVAINEIHEGKITYKTVKE 69
>gi|89256817|ref|YP_514179.1| DNA-directed RNA polymerase omega subunit [Francisella tularensis
subsp. holarctica LVS]
gi|167009856|ref|ZP_02274787.1| DNA-directed RNA polymerase, omega subunit [Francisella
tularensis subsp. holarctica FSC200]
gi|254368099|ref|ZP_04984119.1| DNA-directed RNA polymerase, omega subunit [Francisella
tularensis subsp. holarctica 257]
gi|123401559|sp|Q2A273|RPOZ_FRATH RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|89144648|emb|CAJ79972.1| DNA-directed RNA polymerase omega subunit [Francisella tularensis
subsp. holarctica LVS]
gi|134253909|gb|EBA53003.1| DNA-directed RNA polymerase, omega subunit [Francisella
tularensis subsp. holarctica 257]
Length = 72
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHL--SQGAKPTVDVGKDKNTVVALREIASGTL 58
MAR TVEDC+DKV+ RF LV+LAS R + + ++ + K+K TVVALREIA +
Sbjct: 1 MARVTVEDCLDKVETRFDLVVLASMRANKILKNGYSESMENEKKEKATVVALREIAESEI 60
Query: 59 SPDDLEEDFIHS 70
+ + + + I
Sbjct: 61 TSEQILRNEIEG 72
>gi|187778892|ref|ZP_02995365.1| hypothetical protein CLOSPO_02487 [Clostridium sporogenes ATCC
15579]
gi|187772517|gb|EDU36319.1| hypothetical protein CLOSPO_02487 [Clostridium sporogenes ATCC
15579]
Length = 68
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEE 65
++KVD+R+ LV + S R+R L GAKP VD+ K VA+ EI G ++ ++E
Sbjct: 10 LEKVDDRYSLVTITSKRSRQLIDGAKPLVDIDSTKPVTVAINEIHEGKITYKTVKE 65
>gi|153953991|ref|YP_001394756.1| DNA-directed RNA polymerase subunit omega [Clostridium kluyveri
DSM 555]
gi|219854605|ref|YP_002471727.1| hypothetical protein CKR_1262 [Clostridium kluyveri NBRC 12016]
gi|189043977|sp|A5N7X7|RPOZ_CLOK5 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|254809272|sp|B9E1D8|RPOZ_CLOK1 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|146346872|gb|EDK33408.1| Predicted DNA-directed RNA polymerase omega chain [Clostridium
kluyveri DSM 555]
gi|219568329|dbj|BAH06313.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 72
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 36/58 (62%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEE 65
D + KV+NR+ LV + + R R L +G++ VD+ K +A++EI+ ++ + ++E
Sbjct: 12 DLLKKVENRYTLVTMTAKRARQLIEGSEALVDIDSTKPVTIAIKEISDRAITYETVKE 69
>gi|220931825|ref|YP_002508733.1| DNA-directed RNA polymerase, omega subunit [Halothermothrix
orenii H 168]
gi|219993135|gb|ACL69738.1| DNA-directed RNA polymerase, omega subunit [Halothermothrix
orenii H 168]
Length = 70
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVV-ALREIASGTLSPDD 62
+ KVD+ + LV+LAS R R L+ GA+ ++ K K V +L EIA+G ++ +
Sbjct: 13 LKKVDSPYTLVILASRRARQLNVGARGLIEEYKSKKPVSRSLEEIAAGKVTYEI 66
>gi|167626445|ref|YP_001676945.1| DNA-directed RNA polymerase subunit K/omega [Francisella
philomiragia subsp. philomiragia ATCC 25017]
gi|241668877|ref|ZP_04756455.1| DNA-directed RNA polymerase, subunit K/omega [Francisella
philomiragia subsp. philomiragia ATCC 25015]
gi|254877409|ref|ZP_05250119.1| DNA-directed RNA polymerase omega subunit [Francisella
philomiragia subsp. philomiragia ATCC 25015]
gi|189043983|sp|B0TZ05|RPOZ_FRAP2 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|167596446|gb|ABZ86444.1| DNA-directed RNA polymerase, subunit K/omega [Francisella
philomiragia subsp. philomiragia ATCC 25017]
gi|254843430|gb|EET21844.1| DNA-directed RNA polymerase omega subunit [Francisella
philomiragia subsp. philomiragia ATCC 25015]
Length = 72
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQG--AKPTVDVGKDKNTVVALREIASGTL 58
MAR TVEDC+DKV+ RF LV+LAS R ++ + ++ + K+K TVVALREIA +
Sbjct: 1 MARVTVEDCLDKVETRFDLVVLASMRANNILKKGYSESADNEKKEKATVVALREIAESEI 60
Query: 59 SPDDLEEDFIHS 70
+PD + + I
Sbjct: 61 TPDQILRNEIEG 72
>gi|313901455|ref|ZP_07834912.1| DNA-directed RNA polymerase subunit omega [Thermaerobacter
subterraneus DSM 13965]
gi|313468283|gb|EFR63740.1| DNA-directed RNA polymerase subunit omega [Thermaerobacter
subterraneus DSM 13965]
Length = 76
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 38/58 (65%)
Query: 3 RTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
R T++ +DKVD+++ LV+LA+ R R L GA+P ++ K VAL E+A+G LS
Sbjct: 11 RVTLDVLLDKVDSKYTLVVLAARRARQLVDGAEPVIEPRAAKPVTVALEELAAGKLSY 68
>gi|213421705|ref|ZP_03354771.1| DNA-directed RNA polymerase omega chain [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
Length = 59
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDK 44
MAR TV+D ++K+ NRF LVL+A+ R R + G P V DK
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDK 45
>gi|46201863|ref|ZP_00054215.2| COG1758: DNA-directed RNA polymerase, subunit K/omega
[Magnetospirillum magnetotacticum MS-1]
Length = 107
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 21 LLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEEDFIHSLQKHVEIDEP 80
L+A R R +S GAK TV+ DKN VVALREIA T+ D L+ I +LQKHVE+DEP
Sbjct: 2 LIAGQRARDISAGAKLTVERDNDKNPVVALREIADDTVPLDGLQNALIQNLQKHVEVDEP 61
Query: 81 DSPTEN---SDFSWHKPEALSFGQMSEGDLL 108
+ +D + +M E +
Sbjct: 62 EEDEMEGFIADRDLAFENVANEDEMIEDGMS 92
>gi|58584644|ref|YP_198217.1| DNA-directed RNA polymerase subunit omega, RpoZ [Wolbachia
endosymbiont strain TRS of Brugia malayi]
gi|75497890|sp|Q5GSP9|RPOZ_WOLTR RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|58418960|gb|AAW70975.1| DNA-directed RNA polymerase subunit omega, RpoZ [Wolbachia
endosymbiont strain TRS of Brugia malayi]
Length = 142
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 28/133 (21%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV---GKDKNTVVALREIASGT 57
MA + +E C ++V NRF L LLAS RT L+ GA V KNT+++L EIA
Sbjct: 1 MAESVIEKCTEQVSNRFKLALLASQRTHDLNTGASNPVQSARFKGHKNTIISLYEIAERQ 60
Query: 58 LSPDDLEEDFIHSLQKHV-------------------------EIDEPDSPTENSDFSWH 92
+ +L + ++++ + D E++D
Sbjct: 61 VDTHELFSLLVSRCKEYMKGNLSNTYSSNTSKLEKLLNFSNDQFNTDADVDQESTDIQDD 120
Query: 93 KPEALSFGQMSEG 105
+ E Q SE
Sbjct: 121 EVENEMSNQDSED 133
>gi|41688612|sp|P60332|RPOZ_CLOTE RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
Length = 72
Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEE 65
D + KVDNR+ LV++ S R R L G + ++ K +A+ E+ G +S + + E
Sbjct: 12 DLLKKVDNRYSLVVVTSKRARQLVDGDEALLESDIVKPVSLAIEEVNDGLISYETIRE 69
>gi|170759397|ref|YP_001787828.1| DNA-directed RNA polymerase subunit omega [Clostridium botulinum
A3 str. Loch Maree]
gi|226703113|sp|B1KX63|RPOZ_CLOBM RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|169406386|gb|ACA54797.1| DNA-directed RNA polymerase, omega subunit [Clostridium botulinum
A3 str. Loch Maree]
Length = 72
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEE 65
++KVD+R+ LV + S R+R L GAK VD+ K VA+ EI G ++ ++E
Sbjct: 14 LEKVDDRYSLVTITSKRSRQLIDGAKSLVDIDSTKPVTVAINEIHEGKITYKTVKE 69
>gi|89076056|ref|ZP_01162416.1| DNA-directed RNA polymerase omega subunit [Photobacterium sp.
SKA34]
gi|89048208|gb|EAR53790.1| DNA-directed RNA polymerase omega subunit [Photobacterium sp.
SKA34]
Length = 47
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTV 38
MAR TV+D +DK+ NRF L+ +A+ R R + G P V
Sbjct: 1 MARVTVQDAVDKIGNRFDLIQIAARRARQMQTGGKDPLV 39
>gi|300854439|ref|YP_003779423.1| DNA-directed RNA polymerase subunit omega [Clostridium
ljungdahlii DSM 13528]
gi|300434554|gb|ADK14321.1| DNA-directed RNA polymerase omega chain [Clostridium ljungdahlii
DSM 13528]
Length = 72
Score = 63.3 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEE 65
D + KVDNR+ LV + + R R L Q ++P VDV K +A+ EI ++ + ++E
Sbjct: 12 DLLKKVDNRYTLVTITAKRARQLIQDSEPLVDVDSTKPVTIAINEIDQDLITYETVKE 69
>gi|260886718|ref|ZP_05897981.1| DNA-directed RNA polymerase, omega subunit [Selenomonas sputigena
ATCC 35185]
gi|330839456|ref|YP_004414036.1| DNA-directed RNA polymerase, omega subunit [Selenomonas sputigena
ATCC 35185]
gi|260863570|gb|EEX78070.1| DNA-directed RNA polymerase, omega subunit [Selenomonas sputigena
ATCC 35185]
gi|329747220|gb|AEC00577.1| DNA-directed RNA polymerase, omega subunit [Selenomonas sputigena
ATCC 35185]
Length = 70
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTL 58
MA ++ ++ VD+R+ LV+LA+ R R L G +P V K+ +AL EI+ G +
Sbjct: 3 MADPSINKLLEVVDSRYTLVVLAAKRARQLLSGDEPKVVAKSSKDVTIALEEISEGDI 60
>gi|312898707|ref|ZP_07758096.1| DNA-directed RNA polymerase, omega subunit [Megasphaera
micronuciformis F0359]
gi|310620138|gb|EFQ03709.1| DNA-directed RNA polymerase, omega subunit [Megasphaera
micronuciformis F0359]
Length = 69
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 5 TVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDD 62
T+E + KVD+++ LV LA+ R R L+ G P VDV +K VA+ EI G + +
Sbjct: 6 TLESLMKKVDSKYTLVTLAAKRARELTDGDAPFVDVNTNKVVSVAMEEINEGKIKYET 63
>gi|284048754|ref|YP_003399093.1| DNA-directed RNA polymerase, omega subunit [Acidaminococcus
fermentans DSM 20731]
gi|283952975|gb|ADB47778.1| DNA-directed RNA polymerase, omega subunit [Acidaminococcus
fermentans DSM 20731]
Length = 73
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP---DDLEE 65
DKV +++ LV++AS R R L A V +K +AL EI G ++ +DL+E
Sbjct: 13 DKVGSKYALVIMASKRARQLVDHAPALVKCDSNKPVSIALHEIGEGLVTIATKEDLKE 70
>gi|227825189|ref|ZP_03990021.1| DNA-directed RNA polymerase [Acidaminococcus sp. D21]
gi|226905688|gb|EEH91606.1| DNA-directed RNA polymerase [Acidaminococcus sp. D21]
Length = 70
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPD 61
+KV +++ LV++A+ R R L A V+ +K +A+ EIA G ++ +
Sbjct: 13 EKVGSKYGLVIMAAKRARQLVDHAPALVESKSNKPVSIAMEEIAQGLVTAE 63
>gi|254519246|ref|ZP_05131302.1| DNA-directed RNA polymerase subunit omega [Clostridium sp.
7_2_43FAA]
gi|226912995|gb|EEH98196.1| DNA-directed RNA polymerase subunit omega [Clostridium sp.
7_2_43FAA]
Length = 70
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPD 61
+ D + KVD+R+ LV++ S R R + G+ P V K +A+ E+ G + +
Sbjct: 6 IMDLLKKVDDRYSLVIVTSKRARQIIDGSDPMVATKSKKPLTIAINEVNEGEVGYE 61
>gi|205356290|ref|ZP_03223056.1| putative DNA directed RNA polymerase omega chain [Campylobacter
jejuni subsp. jejuni CG8421]
gi|205345895|gb|EDZ32532.1| putative DNA directed RNA polymerase omega chain [Campylobacter
jejuni subsp. jejuni CG8421]
Length = 107
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 10 IDKVDN-RFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV--VALREIASGTLSPDDLEED 66
++K+ N R+ L L+ + R L+ GA P VD K+KN + +AL EIA ++ + L E
Sbjct: 46 LEKMGNDRYRLSLVVAKRAEQLANGATPLVDFDKNKNKLADIALYEIAENKITLEGLVET 105
>gi|323705510|ref|ZP_08117085.1| DNA-directed RNA polymerase, omega subunit [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535412|gb|EGB25188.1| DNA-directed RNA polymerase, omega subunit [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 69
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPD 61
D ++K+D+++ L L S R R + G V+ K +A EI G ++ +
Sbjct: 9 DLMNKIDSKYTLCALVSKRARQIISGEPSLVETDSKKPVTIATEEINEGLITFE 62
>gi|307748177|gb|ADN91447.1| DNA-directed RNA polymerase subunit omega [Campylobacter jejuni
subsp. jejuni M1]
Length = 107
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 10 IDKVDN-RFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV--VALREIASGTLSPDDLEED 66
++K+ N R+ L L+ + R L+ GA P VD K+KN + +AL EIA ++ + L E
Sbjct: 46 LEKMGNDRYRLSLVVAKRAEQLANGATPLVDFDKNKNKLADIALYEIAENKITLEGLVET 105
>gi|227513479|ref|ZP_03943528.1| DNA-directed RNA polymerase [Lactobacillus buchneri ATCC 11577]
gi|227524621|ref|ZP_03954670.1| DNA-directed RNA polymerase [Lactobacillus hilgardii ATCC 8290]
gi|227083352|gb|EEI18664.1| DNA-directed RNA polymerase [Lactobacillus buchneri ATCC 11577]
gi|227088296|gb|EEI23608.1| DNA-directed RNA polymerase [Lactobacillus hilgardii ATCC 8290]
Length = 70
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTLSPD 61
V+ +DK+D+R+ L++LAS R L GAKP +D K + +V A EIA+G L D
Sbjct: 7 VDKLLDKIDSRYSLIMLASKRAHELDAGAKPLLDSYKSRKSVGKAFEEIAAGVLKID 63
>gi|227510470|ref|ZP_03940519.1| DNA-directed RNA polymerase [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227190122|gb|EEI70189.1| DNA-directed RNA polymerase [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 70
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTLSPD 61
V+ +DK+D+R+ L++LAS R L GAKP +D K + +V A EIA+G L D
Sbjct: 7 VDKLLDKIDSRYSLIMLASKRAHELDAGAKPLLDSYKSRKSVGKAFEEIAAGVLKID 63
>gi|118443366|ref|YP_878321.1| DNA-directed RNA polymerase subunit omega [Clostridium novyi NT]
gi|166229419|sp|A0Q119|RPOZ_CLONN RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|118133822|gb|ABK60866.1| DNA-directed RNA polymerase, omega subunit [Clostridium novyi NT]
Length = 73
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKD-KNTVVALREIASGTLSPDDLEE 65
D + KVDNR+ LV + S R R + G + V+V K A+ E+ +G +S + L E
Sbjct: 12 DLLTKVDNRYSLVTVTSRRARQIIDGDEALVNVEDAYKPLTTAIHEVNAGKVSYESLVE 70
>gi|18310729|ref|NP_562663.1| DNA-directed RNA polymerase subunit omega [Clostridium
perfringens str. 13]
gi|110799897|ref|YP_696433.1| DNA-directed RNA polymerase subunit omega [Clostridium
perfringens ATCC 13124]
gi|110803058|ref|YP_699033.1| DNA-directed RNA polymerase subunit omega [Clostridium
perfringens SM101]
gi|168207274|ref|ZP_02633279.1| DNA-directed RNA polymerase, omega subunit [Clostridium
perfringens E str. JGS1987]
gi|168210620|ref|ZP_02636245.1| DNA-directed RNA polymerase, omega subunit [Clostridium
perfringens B str. ATCC 3626]
gi|168214224|ref|ZP_02639849.1| DNA-directed RNA polymerase, omega subunit [Clostridium
perfringens CPE str. F4969]
gi|168217034|ref|ZP_02642659.1| DNA-directed RNA polymerase, omega subunit [Clostridium
perfringens NCTC 8239]
gi|169342664|ref|ZP_02863705.1| DNA-directed RNA polymerase, omega subunit [Clostridium
perfringens C str. JGS1495]
gi|182625834|ref|ZP_02953600.1| DNA-directed RNA polymerase, omega subunit [Clostridium
perfringens D str. JGS1721]
gi|20978681|sp|Q8XJK9|RPOZ_CLOPE RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|122956625|sp|Q0SS74|RPOZ_CLOPS RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|123049738|sp|Q0TPK7|RPOZ_CLOP1 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|18145410|dbj|BAB81453.1| probable DNA-directed RNA polymerase omega subunit [Clostridium
perfringens str. 13]
gi|110674544|gb|ABG83531.1| DNA-directed RNA polymerase, omega subunit [Clostridium
perfringens ATCC 13124]
gi|110683559|gb|ABG86929.1| DNA-directed RNA polymerase, omega subunit [Clostridium
perfringens SM101]
gi|169299170|gb|EDS81240.1| DNA-directed RNA polymerase, omega subunit [Clostridium
perfringens C str. JGS1495]
gi|170661349|gb|EDT14032.1| DNA-directed RNA polymerase, omega subunit [Clostridium
perfringens E str. JGS1987]
gi|170711294|gb|EDT23476.1| DNA-directed RNA polymerase, omega subunit [Clostridium
perfringens B str. ATCC 3626]
gi|170714281|gb|EDT26463.1| DNA-directed RNA polymerase, omega subunit [Clostridium
perfringens CPE str. F4969]
gi|177908868|gb|EDT71360.1| DNA-directed RNA polymerase, omega subunit [Clostridium
perfringens D str. JGS1721]
gi|182380969|gb|EDT78448.1| DNA-directed RNA polymerase, omega subunit [Clostridium
perfringens NCTC 8239]
Length = 70
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEE 65
D + +V++R+ LV+L++ R R + GA+ VDV +K +A+ EI G ++ D EE
Sbjct: 12 DLLKRVEDRYSLVILSAKRARQIIDGAETFVDVESNKPLTIAINEIDEGFVNYKDTEE 69
>gi|290968490|ref|ZP_06560029.1| DNA-directed RNA polymerase, omega subunit [Megasphaera genomosp.
type_1 str. 28L]
gi|290781486|gb|EFD94075.1| DNA-directed RNA polymerase, omega subunit [Megasphaera genomosp.
type_1 str. 28L]
Length = 69
Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 7 EDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPD 61
E ++KVD+++ LV LA+ R R L+ G +PTV +K +A+ EI +G + +
Sbjct: 8 ESLMEKVDSKYTLVTLAAKRARELTDGDQPTVCADTNKVVSIAMEEIDAGKIRYE 62
>gi|304316979|ref|YP_003852124.1| DNA-directed RNA polymerase subunit omega [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778481|gb|ADL69040.1| DNA-directed RNA polymerase, omega subunit [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 69
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPD 61
D ++K+D+++ L L S R R + G + K +A EI G ++ +
Sbjct: 9 DLMNKIDSKYTLCALVSKRARQIINGEPSLIQTDSKKPVTIATEEINEGLITFE 62
>gi|225181321|ref|ZP_03734765.1| DNA-directed RNA polymerase, omega subunit [Dethiobacter
alkaliphilus AHT 1]
gi|225167902|gb|EEG76709.1| DNA-directed RNA polymerase, omega subunit [Dethiobacter
alkaliphilus AHT 1]
Length = 68
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEED 66
I KVD+++ LV+ A+ R R L++ A +D K+ +AL EIA+ + D +++
Sbjct: 10 IKKVDSKYTLVIAAAKRARMLNEDAPRLIDTKSIKDVSIALEEIAADKIGYDRIKKQ 66
>gi|167037735|ref|YP_001665313.1| DNA-directed RNA polymerase subunit omega [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256752266|ref|ZP_05493129.1| DNA-directed RNA polymerase, omega subunit [Thermoanaerobacter
ethanolicus CCSD1]
gi|320116150|ref|YP_004186309.1| DNA-directed RNA polymerase subunit omega [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|226703188|sp|B0KA14|RPOZ_THEP3 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166856569|gb|ABY94977.1| DNA-directed RNA polymerase, omega subunit [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256748834|gb|EEU61875.1| DNA-directed RNA polymerase, omega subunit [Thermoanaerobacter
ethanolicus CCSD1]
gi|319929241|gb|ADV79926.1| DNA-directed RNA polymerase, omega subunit [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 70
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
D ++KVD+++ L L + R R L G VD+ DK +A E+ +G ++
Sbjct: 9 DLMEKVDSKYTLCSLVAKRARQLIAGDTKLVDIDSDKPVTIATEEVNNGLITY 61
>gi|167040397|ref|YP_001663382.1| DNA-directed RNA polymerase subunit omega [Thermoanaerobacter sp.
X514]
gi|300914481|ref|ZP_07131797.1| DNA-directed RNA polymerase, omega subunit [Thermoanaerobacter
sp. X561]
gi|307724283|ref|YP_003904034.1| DNA-directed RNA polymerase subunit omega [Thermoanaerobacter sp.
X513]
gi|226703189|sp|B0K295|RPOZ_THEPX RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166854637|gb|ABY93046.1| DNA-directed RNA polymerase, omega subunit [Thermoanaerobacter
sp. X514]
gi|300889416|gb|EFK84562.1| DNA-directed RNA polymerase, omega subunit [Thermoanaerobacter
sp. X561]
gi|307581344|gb|ADN54743.1| DNA-directed RNA polymerase, omega subunit [Thermoanaerobacter
sp. X513]
Length = 70
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
D ++KVD+++ L L + R R L G VD+ DK +A E+ +G ++
Sbjct: 9 DLMEKVDSKYTLCSLVAKRARQLIAGDTKLVDIDSDKPVTIATEEVNNGLITY 61
>gi|20807953|ref|NP_623124.1| DNA-directed RNA polymerase subunit omega [Thermoanaerobacter
tengcongensis MB4]
gi|23822089|sp|Q8R9S7|RPOZ_THETN RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|20516524|gb|AAM24728.1| DNA-directed RNA polymerase subunit K/omega [Thermoanaerobacter
tengcongensis MB4]
Length = 70
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPD 61
D ++KVD+++ L L + R R L G K VD+ DK +A E+ G ++ +
Sbjct: 9 DLMEKVDSKYTLCALVAKRARQLVAGDKKLVDIDSDKPVTIATEEVYRGLITYE 62
>gi|150016026|ref|YP_001308280.1| DNA-directed RNA polymerase subunit omega [Clostridium
beijerinckii NCIMB 8052]
gi|189043976|sp|A6LSJ4|RPOZ_CLOB8 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|149902491|gb|ABR33324.1| DNA-directed RNA polymerase, omega subunit [Clostridium
beijerinckii NCIMB 8052]
Length = 72
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 36/62 (58%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEE 65
V D ++K+ +R+ LV+L S R R + +GA+P + + +K +A+ E+ + + LEE
Sbjct: 10 VVDLLEKIHDRYSLVILTSKRARQIIEGAEPQISIKSNKPLTIAINEVDQDAVEFEILEE 69
Query: 66 DF 67
Sbjct: 70 GL 71
>gi|78045232|ref|YP_360319.1| DNA-directed RNA polymerase subunit omega [Carboxydothermus
hydrogenoformans Z-2901]
gi|115305579|sp|Q3AC15|RPOZ_CARHZ RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|77997347|gb|ABB16246.1| DNA-directed RNA polymerase, omega subunit [Carboxydothermus
hydrogenoformans Z-2901]
Length = 69
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEED 66
+ K D+R+ LV+ + R R ++ G + +K +AL EI + ++ L+
Sbjct: 10 MKKADSRYTLVVATAKRARQITAGESSKLKHISNKPVTIALHEIGNDLITYQRLKSS 66
>gi|307264796|ref|ZP_07546358.1| DNA-directed RNA polymerase, omega subunit [Thermoanaerobacter
wiegelii Rt8.B1]
gi|306920054|gb|EFN50266.1| DNA-directed RNA polymerase, omega subunit [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 70
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPD 61
D ++KVD+++ L L + R R L G VD+ DK VA E+ G ++ +
Sbjct: 9 DLMEKVDSKYTLCSLVAKRARQLIAGDTKLVDIDSDKPVTVATEEVNKGLITYE 62
>gi|296133311|ref|YP_003640558.1| DNA-directed RNA polymerase, omega subunit [Thermincola sp. JR]
gi|296031889|gb|ADG82657.1| DNA-directed RNA polymerase, omega subunit [Thermincola potens
JR]
Length = 68
Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLE 64
+ VD+++ L + A+ R R +++GA V+ K VAL EIA + +
Sbjct: 10 LKYVDSKYTLAVAAAKRARMITEGAPKLVESNSYKPVTVALEEIAQDKVKYHRTK 64
>gi|326389549|ref|ZP_08211116.1| DNA-directed RNA polymerase, omega subunit [Thermoanaerobacter
ethanolicus JW 200]
gi|325994554|gb|EGD52979.1| DNA-directed RNA polymerase, omega subunit [Thermoanaerobacter
ethanolicus JW 200]
Length = 70
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPD 61
D ++KVD+++ L L + R R L G VD+ DK +A E+ G ++ +
Sbjct: 9 DLMEKVDSKYTLCSLIAKRARQLIAGDTKLVDIDSDKPVTIATEEVNKGLITYE 62
>gi|332981559|ref|YP_004463000.1| DNA-directed RNA polymerase subunit omega [Mahella australiensis
50-1 BON]
gi|332699237|gb|AEE96178.1| DNA-directed RNA polymerase subunit omega [Mahella australiensis
50-1 BON]
Length = 65
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLSPDDLE 64
D + +VD+++ LV++ + R R L++G V + +A EIA G ++ + ++
Sbjct: 8 DLLSRVDSKYALVVMVAKRARQLAEGEPSLVSNIPSNNPVTIAACEIAQGKITYERIK 65
>gi|51892478|ref|YP_075169.1| RNA polymerase omega subunit [Symbiobacterium thermophilum IAM
14863]
gi|81610562|sp|Q67PR8|RPOZ_SYMTH RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|51856167|dbj|BAD40325.1| RNA polymerase omega subunit [Symbiobacterium thermophilum IAM
14863]
Length = 69
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPD 61
VD+++ LV+LA+ R R L G V+ +K +AL E+A+G L +
Sbjct: 13 VDSKYTLVILAARRARDLQDGKHQMVESKSNKPVTIALEELAAGKLFFE 61
>gi|302389587|ref|YP_003825408.1| DNA-directed RNA polymerase subunit omega [Thermosediminibacter
oceani DSM 16646]
gi|302200215|gb|ADL07785.1| DNA-directed RNA polymerase subunit omega [Thermosediminibacter
oceani DSM 16646]
Length = 68
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 12 KVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPD 61
K ++++ LV+ A+ R R L +G+ VDV K +AL E+ +G + +
Sbjct: 12 KYESKYALVVAAAKRARQLVEGSPKLVDVKTTKPVSIALFELDAGKIKIE 61
>gi|289578514|ref|YP_003477141.1| DNA-directed RNA polymerase subunit omega [Thermoanaerobacter
italicus Ab9]
gi|289528227|gb|ADD02579.1| DNA-directed RNA polymerase, omega subunit [Thermoanaerobacter
italicus Ab9]
Length = 70
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
D ++K+D+++ L L + R R L G VD+ DK +A E+ +G ++
Sbjct: 9 DLMEKMDSKYTLCSLVAKRARQLIAGDTKLVDIDSDKPVTIATEEVNNGLITY 61
>gi|239834983|ref|ZP_04683311.1| DNA-directed RNA polymerase, omega subunit [Ochrobactrum
intermedium LMG 3301]
gi|239823046|gb|EEQ94615.1| DNA-directed RNA polymerase, omega subunit [Ochrobactrum
intermedium LMG 3301]
Length = 105
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDL 63
V DC + NRF L L A+ R R L++GA+P +D +AL EIA+G + D+L
Sbjct: 6 VFDCQKVLPNRFALTLAAASRIRALARGAEPRLDAVDRSVGDLALHEIAAGVFTRDEL 63
>gi|297544789|ref|YP_003677091.1| DNA-directed RNA polymerase subunit omega [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842564|gb|ADH61080.1| DNA-directed RNA polymerase, omega subunit [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 70
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
D ++K+D+++ L L + R R L G VD+ DK +A E+ +G ++
Sbjct: 9 DLMEKMDSKYTLCSLVAKRARQLIAGDTKLVDINSDKPVTIATEEVNNGLITY 61
>gi|86741880|ref|YP_482280.1| DNA-directed RNA polymerase subunit omega [Frankia sp. CcI3]
gi|86568742|gb|ABD12551.1| DNA-directed RNA polymerase, omega subunit [Frankia sp. CcI3]
Length = 151
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGK--DKNTVVALRE 52
+++ ++ D+++ LV+ A+ R R ++ P V+ +K +ALRE
Sbjct: 73 IDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVETTNAQEKPLSIALRE 132
Query: 53 IASGTLSPDDLEEDF 67
I +G L+ + + +
Sbjct: 133 INAGLLTHETVADSL 147
>gi|323466283|gb|ADX69970.1| DNA-directed RNA polymerase subunit omega [Lactobacillus
helveticus H10]
Length = 83
Score = 56.0 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 3 RTT---VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK-DKNTVVALREIASGTL 58
R T ++ + +VD+R+ L +LA+ R L G PT+D K DK AL EIA+G +
Sbjct: 11 RITYPSIDKLLSRVDSRYSLSVLAAKRAHELEAGDPPTLDHFKCDKAVGKALEEIAAGKV 70
Query: 59 SPD 61
+ D
Sbjct: 71 TVD 73
>gi|167630197|ref|YP_001680696.1| DNA-directed RNA polymerase, omega subunit [Heliobacterium
modesticaldum Ice1]
gi|226703140|sp|B0TGS4|RPOZ_HELMI RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|167592937|gb|ABZ84685.1| DNA-directed RNA polymerase, omega subunit [Heliobacterium
modesticaldum Ice1]
Length = 69
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTLSP 60
++KVD+++ LV+LA+ R R L + P V V K V +AL EI G +S
Sbjct: 10 MEKVDSKYTLVVLAAKRARALVEKQAPLVSVAKSAKPVSIALHEIVDGKVSY 61
>gi|90961588|ref|YP_535504.1| DNA-directed RNA polymerase omega chain [Lactobacillus salivarius
UCC118]
gi|227890673|ref|ZP_04008478.1| DNA-directed RNA polymerase omega chain [Lactobacillus salivarius
ATCC 11741]
gi|301299285|ref|ZP_07205571.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
salivarius ACS-116-V-Col5a]
gi|123269954|sp|Q1WUB4|RPOZ_LACS1 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|90820782|gb|ABD99421.1| DNA-directed RNA polymerase omega chain [Lactobacillus salivarius
UCC118]
gi|227867611|gb|EEJ75032.1| DNA-directed RNA polymerase omega chain [Lactobacillus salivarius
ATCC 11741]
gi|300853129|gb|EFK80727.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
salivarius ACS-116-V-Col5a]
Length = 65
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLSPDD 62
V+D +++VD+R+ L++LA+ R L G+ + + KN AL EIA+G + +
Sbjct: 7 VDDLLEQVDSRYSLIMLAAKRAHDLDAGSPELLSNYESPKNIGHALEEIAAGKVKIKE 64
>gi|210622385|ref|ZP_03293138.1| hypothetical protein CLOHIR_01086 [Clostridium hiranonis DSM
13275]
gi|210154267|gb|EEA85273.1| hypothetical protein CLOHIR_01086 [Clostridium hiranonis DSM
13275]
Length = 89
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVV-ALREIASGTLS 59
M + ++ D ++K+DNR+ L + R R L GA+P V+ K + V+ A +E+A G ++
Sbjct: 1 MLKPSINDVLEKIDNRYYLAWTVAKRARELVDGAEPYVETAKKEKPVITATKEVAEGKIT 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSD 88
L E+ I +K + ++ E +
Sbjct: 61 YRLLTEEEIALKEKLHQEEQNRQIAEQQE 89
>gi|292669824|ref|ZP_06603250.1| DNA-directed RNA polymerase subunit omega [Selenomonas noxia ATCC
43541]
gi|292648621|gb|EFF66593.1| DNA-directed RNA polymerase subunit omega [Selenomonas noxia ATCC
43541]
Length = 76
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSPDDLEED 66
+ KVD+R+ +V+LA+ R R L +G + KN AL EIA G ++ D +E
Sbjct: 18 LTKVDSRYGMVVLAAKRARQLLEGDPVKSELARSTKNVTNALEEIAEGKITYDLCKES 75
>gi|182420430|ref|ZP_02951649.1| DNA-directed RNA polymerase, omega subunit [Clostridium butyricum
5521]
gi|237667669|ref|ZP_04527653.1| DNA-directed RNA polymerase, omega subunit [Clostridium butyricum
E4 str. BoNT E BL5262]
gi|182375716|gb|EDT73316.1| DNA-directed RNA polymerase, omega subunit [Clostridium butyricum
5521]
gi|237656017|gb|EEP53573.1| DNA-directed RNA polymerase, omega subunit [Clostridium butyricum
E4 str. BoNT E BL5262]
Length = 73
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEE 65
V D ++K +R+ LV+L S R R + G+KP VD K +A+ E+ ++ + + E
Sbjct: 10 VVDLLEKTKDRYSLVILTSKRARQIIDGSKPQVDAHSKKPLTIAIHEVDEDAINFEIVNE 69
Query: 66 D 66
+
Sbjct: 70 E 70
>gi|125973829|ref|YP_001037739.1| DNA-directed RNA polymerase, omega subunit [Clostridium
thermocellum ATCC 27405]
gi|256004280|ref|ZP_05429262.1| DNA-directed RNA polymerase, omega subunit [Clostridium
thermocellum DSM 2360]
gi|281417988|ref|ZP_06249008.1| DNA-directed RNA polymerase, omega subunit [Clostridium
thermocellum JW20]
gi|125714054|gb|ABN52546.1| DNA-directed RNA polymerase subunit omega [Clostridium
thermocellum ATCC 27405]
gi|255991714|gb|EEU01814.1| DNA-directed RNA polymerase, omega subunit [Clostridium
thermocellum DSM 2360]
gi|281409390|gb|EFB39648.1| DNA-directed RNA polymerase, omega subunit [Clostridium
thermocellum JW20]
gi|316939976|gb|ADU74010.1| DNA-directed RNA polymerase, omega subunit [Clostridium
thermocellum DSM 1313]
Length = 78
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
++KVD+R+ LV+ + R R L+ GA + DK VA+ EI ++
Sbjct: 20 LEKVDSRYTLVVATAKRARQLTDGANKLTNCESDKPVTVAINEINENKITY 70
>gi|326202062|ref|ZP_08191932.1| DNA-directed RNA polymerase, omega subunit [Clostridium
papyrosolvens DSM 2782]
gi|325987857|gb|EGD48683.1| DNA-directed RNA polymerase, omega subunit [Clostridium
papyrosolvens DSM 2782]
Length = 68
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
+ KVD+R+ L + A+ R R L GA DK +A+ EIA ++
Sbjct: 10 MKKVDSRYTLAVEAAKRARQLVDGANKMTKFNSDKEVTIAIHEIAEDKITY 60
>gi|255658374|ref|ZP_05403783.1| DNA-directed RNA polymerase, omega subunit [Mitsuokella multacida
DSM 20544]
gi|260849705|gb|EEX69712.1| DNA-directed RNA polymerase, omega subunit [Mitsuokella multacida
DSM 20544]
Length = 76
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPT-VDVGKDKNTVVALREIASGTLSPD 61
+ KVD+R+ LV+LA+ R R L GA+ KN AL EIA G ++ +
Sbjct: 19 MKKVDSRYGLVVLAAKRARQLLDGAELKATKAHSTKNVTNALEEIAEGKITYE 71
>gi|313895022|ref|ZP_07828579.1| DNA-directed RNA polymerase, omega subunit [Selenomonas sp. oral
taxon 137 str. F0430]
gi|320529833|ref|ZP_08030910.1| DNA-directed RNA polymerase, omega subunit [Selenomonas artemidis
F0399]
gi|312975917|gb|EFR41375.1| DNA-directed RNA polymerase, omega subunit [Selenomonas sp. oral
taxon 137 str. F0430]
gi|320137851|gb|EFW29756.1| DNA-directed RNA polymerase, omega subunit [Selenomonas artemidis
F0399]
Length = 76
Score = 55.3 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSPDDLEEDF 67
+ KVD+R+ +V+LA+ R R L +G + KN A EIA G +S D +E
Sbjct: 18 LTKVDSRYGMVVLAAKRARQLLEGDPVKSELARSTKNVTNAFEEIAEGKISYDLYKESI 76
>gi|291532910|emb|CBL06023.1| DNA-directed RNA polymerase subunit omega [Megamonas hypermegale
ART12/1]
Length = 69
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEEDF 67
+ KVD+++ LV+LA+ R R + G+ + K+ AL E+A ++ +++
Sbjct: 12 LPKVDSKYTLVVLAAKRARQILAGSPVKSVLQSHKDVTNALEEVAEDKITFARVKKSI 69
>gi|258593311|emb|CBE69650.1| DNA-directed RNA polymerase subunit omega (RNAP omega subunit)
(Transcriptase subunit omega) (RNA polymerase omega
subunit) (modular protein) [NC10 bacterium 'Dutch
sediment']
Length = 148
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 34/55 (61%)
Query: 7 EDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPD 61
E + VD+++ LV++A+ R + + +GA+ + +K T +AL EI +G L+ +
Sbjct: 7 EQLLTHVDSKYRLVIIAAKRAKQVMRGAEHLIAAKSNKATYIALEEIGAGKLAYE 61
>gi|303238628|ref|ZP_07325161.1| DNA-directed RNA polymerase, omega subunit [Acetivibrio
cellulolyticus CD2]
gi|302593747|gb|EFL63462.1| DNA-directed RNA polymerase, omega subunit [Acetivibrio
cellulolyticus CD2]
Length = 78
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 30/51 (58%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
+++VD+R+ LV+ A+ R R +++GA + +K +A+ EI ++
Sbjct: 20 LNRVDSRYTLVVAAAKRARQITEGAHKLTECESEKPVTIAINEIDEQKITY 70
>gi|253681996|ref|ZP_04862793.1| DNA-directed RNA polymerase, omega subunit [Clostridium botulinum
D str. 1873]
gi|253561708|gb|EES91160.1| DNA-directed RNA polymerase, omega subunit [Clostridium botulinum
D str. 1873]
Length = 73
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKD-KNTVVALREIASGTLSPDDL 63
D + KVDNR+ LV + S R R + G + V+V K A+ E+ +G +S + L
Sbjct: 12 DLLTKVDNRYSLVTVTSKRARQIIDGDEVLVNVEDAYKPLTTAIHEVNAGEVSYESL 68
>gi|220929211|ref|YP_002506120.1| DNA-directed RNA polymerase subunit omega [Clostridium
cellulolyticum H10]
gi|254809273|sp|B8I2Z7|RPOZ_CLOCE RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|219999539|gb|ACL76140.1| DNA-directed RNA polymerase, omega subunit [Clostridium
cellulolyticum H10]
Length = 68
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
+ KVD+R+ L + A+ R R L GA DK +A+ EIA ++
Sbjct: 10 MKKVDSRYTLAVEAAKRARQLVDGATKMAKCDSDKEVTIAINEIAEDKITY 60
>gi|188590783|ref|YP_001920557.1| DNA-directed RNA polymerase, omega subunit [Clostridium botulinum
E3 str. Alaska E43]
gi|251778568|ref|ZP_04821488.1| DNA-directed RNA polymerase, omega subunit [Clostridium botulinum
E1 str. 'BoNT E Beluga']
gi|226703110|sp|B2V4A8|RPOZ_CLOBA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|188501064|gb|ACD54200.1| DNA-directed RNA polymerase, omega subunit [Clostridium botulinum
E3 str. Alaska E43]
gi|243082883|gb|EES48773.1| DNA-directed RNA polymerase, omega subunit [Clostridium botulinum
E1 str. 'BoNT E Beluga']
Length = 66
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDD 62
D + KV +R+ LV+L S R R + +GA+P + V K +A+ E+ + ++
Sbjct: 12 DLLTKVGDRYSLVILTSKRAREIIEGAEPLIKVDSHKPLTIAINEVNEDIVKYEE 66
>gi|148544399|ref|YP_001271769.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus reuteri
DSM 20016]
gi|184153763|ref|YP_001842104.1| DNA-directed RNA polymerase omega subunit [Lactobacillus reuteri
JCM 1112]
gi|194466509|ref|ZP_03072496.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus reuteri
100-23]
gi|227363176|ref|ZP_03847310.1| DNA-directed RNA polymerase [Lactobacillus reuteri MM2-3]
gi|227544383|ref|ZP_03974432.1| DNA-directed RNA polymerase [Lactobacillus reuteri CF48-3A]
gi|300909756|ref|ZP_07127217.1| DNA-directed RNA polymerase subunit omega [Lactobacillus reuteri
SD2112]
gi|325682719|ref|ZP_08162235.1| DNA-directed RNA polymerase subunit omega [Lactobacillus reuteri
MM4-1A]
gi|226703146|sp|A5VKQ8|RPOZ_LACRD RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703147|sp|B2G842|RPOZ_LACRJ RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|148531433|gb|ABQ83432.1| DNA-directed RNA polymerase subunit omega [Lactobacillus reuteri
DSM 20016]
gi|183225107|dbj|BAG25624.1| DNA-directed RNA polymerase omega subunit [Lactobacillus reuteri
JCM 1112]
gi|194453545|gb|EDX42442.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus reuteri
100-23]
gi|227071782|gb|EEI10071.1| DNA-directed RNA polymerase [Lactobacillus reuteri MM2-3]
gi|227185646|gb|EEI65717.1| DNA-directed RNA polymerase [Lactobacillus reuteri CF48-3A]
gi|300893621|gb|EFK86980.1| DNA-directed RNA polymerase subunit omega [Lactobacillus reuteri
SD2112]
gi|324977069|gb|EGC14020.1| DNA-directed RNA polymerase subunit omega [Lactobacillus reuteri
MM4-1A]
Length = 72
Score = 54.5 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSPD 61
V++ + +D+R+ LV+LAS R L GA P ++ K+ AL EI +G ++ D
Sbjct: 7 VDELLKHIDSRYSLVMLASKRANELDAGAAPLLEHYDSSKSVGKALEEILAGKVTID 63
>gi|161507731|ref|YP_001577692.1| DNA-directed RNA polymerase [Lactobacillus helveticus DPC 4571]
gi|260101423|ref|ZP_05751660.1| DNA-directed RNA polymerase subunit omega [Lactobacillus
helveticus DSM 20075]
gi|172048322|sp|A8YVW4|RPOZ_LACH4 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|160348720|gb|ABX27394.1| DNA-directed RNA polymerase [Lactobacillus helveticus DPC 4571]
gi|260084763|gb|EEW68883.1| DNA-directed RNA polymerase subunit omega [Lactobacillus
helveticus DSM 20075]
gi|328465624|gb|EGF36847.1| DNA-directed RNA polymerase subunit omega [Lactobacillus
helveticus MTCC 5463]
Length = 74
Score = 54.5 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 3 RTT---VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK-DKNTVVALREIASGTL 58
R T ++ + +VD+R+ L +LA+ R L G PT+D K DK AL EIA+G +
Sbjct: 2 RITYPSIDKLLSRVDSRYSLSVLAAKRAHELEAGDPPTLDHFKCDKAVGKALEEIAAGKV 61
Query: 59 SPD 61
+ D
Sbjct: 62 TVD 64
>gi|269958911|ref|YP_003328700.1| DNA-directed RNA polymerase omega subunit [Anaplasma centrale
str. Israel]
gi|269848742|gb|ACZ49386.1| DNA-directed RNA polymerase omega subunit [Anaplasma centrale
str. Israel]
Length = 110
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 30/57 (52%)
Query: 21 LLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEEDFIHSLQKHVEI 77
+LAS R LS GA V DKNTVVALREI L + ++ +K++E
Sbjct: 2 ILASQRAHELSSGACTAVARRGDKNTVVALREIVGKQLDLAAVFRLAVNRCKKYLEE 58
>gi|331269689|ref|YP_004396181.1| DNA-directed RNA polymerase subunit omega [Clostridium botulinum
BKT015925]
gi|329126239|gb|AEB76184.1| DNA-directed RNA polymerase, omega subunit [Clostridium botulinum
BKT015925]
Length = 69
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKD-KNTVVALREIASGTLSPDDL 63
D + KVDNR+ LV + S R R + G + V+V K A+ E+ SG ++ + L
Sbjct: 8 DLLTKVDNRYSLVTVTSKRARQIIDGDEMLVNVEDAYKPLTTAIHEVNSGEVTYESL 64
>gi|259501641|ref|ZP_05744543.1| DNA-directed RNA polymerase subunit omega [Lactobacillus iners
DSM 13335]
gi|302191152|ref|ZP_07267406.1| DNA-directed RNA polymerase subunit omega [Lactobacillus iners
AB-1]
gi|309803323|ref|ZP_07697420.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus iners
LactinV 11V1-d]
gi|309804808|ref|ZP_07698872.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus iners
LactinV 09V1-c]
gi|309806360|ref|ZP_07700373.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus iners
LactinV 03V1-b]
gi|309809984|ref|ZP_07703832.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus iners
SPIN 2503V10-D]
gi|312871625|ref|ZP_07731717.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus iners
LEAF 3008A-a]
gi|312873226|ref|ZP_07733282.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus iners
LEAF 2052A-d]
gi|312874664|ref|ZP_07734688.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus iners
LEAF 2053A-b]
gi|315653704|ref|ZP_07906624.1| DNA-directed RNA polymerase subunit omega [Lactobacillus iners
ATCC 55195]
gi|325911718|ref|ZP_08174125.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus iners
UPII 143-D]
gi|325913008|ref|ZP_08175381.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus iners
UPII 60-B]
gi|329921119|ref|ZP_08277642.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus iners
SPIN 1401G]
gi|259166926|gb|EEW51421.1| DNA-directed RNA polymerase subunit omega [Lactobacillus iners
DSM 13335]
gi|308164831|gb|EFO67081.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus iners
LactinV 11V1-d]
gi|308165918|gb|EFO68137.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus iners
LactinV 09V1-c]
gi|308167344|gb|EFO69510.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus iners
LactinV 03V1-b]
gi|308169772|gb|EFO71817.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus iners
SPIN 2503V10-D]
gi|311089894|gb|EFQ48314.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus iners
LEAF 2053A-b]
gi|311091237|gb|EFQ49625.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus iners
LEAF 2052A-d]
gi|311092850|gb|EFQ51202.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus iners
LEAF 3008A-a]
gi|315489066|gb|EFU78708.1| DNA-directed RNA polymerase subunit omega [Lactobacillus iners
ATCC 55195]
gi|325476484|gb|EGC79643.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus iners
UPII 143-D]
gi|325477688|gb|EGC80827.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus iners
UPII 60-B]
gi|328935026|gb|EGG31515.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus iners
SPIN 1401G]
Length = 72
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-PTVDVGKDKNTVVALREIASGTLSPDDLE 64
++ +DKV++R+ L +LA+ R+ L G + K AL EIA+G ++ D
Sbjct: 8 IDKLLDKVNSRYSLSVLAAKRSHELQSGEPGALLSYKSSKALGQALEEIAAGKVTIDPEH 67
Query: 65 EDFIH 69
+ I
Sbjct: 68 QTKID 72
>gi|58337597|ref|YP_194182.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
acidophilus NCFM]
gi|227878885|ref|ZP_03996790.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
crispatus JV-V01]
gi|227904237|ref|ZP_04022042.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
acidophilus ATCC 4796]
gi|256843399|ref|ZP_05548887.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
crispatus 125-2-CHN]
gi|256849779|ref|ZP_05555210.1| DNA-directed RNA polymerase subunit omega [Lactobacillus
crispatus MV-1A-US]
gi|262046522|ref|ZP_06019483.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
crispatus MV-3A-US]
gi|293380309|ref|ZP_06626383.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
crispatus 214-1]
gi|295693195|ref|YP_003601805.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
crispatus ST1]
gi|315038636|ref|YP_004032204.1| DNA-directed RNA polymerase subunit omega [Lactobacillus
amylovorus GRL 1112]
gi|325957117|ref|YP_004292529.1| DNA-directed RNA polymerase subunit omega [Lactobacillus
acidophilus 30SC]
gi|75432896|sp|Q5FJH3|RPOZ_LACAC RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|58254914|gb|AAV43151.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
acidophilus NCFM]
gi|227861519|gb|EEJ69133.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
crispatus JV-V01]
gi|227867885|gb|EEJ75306.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
acidophilus ATCC 4796]
gi|256614819|gb|EEU20020.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
crispatus 125-2-CHN]
gi|256713268|gb|EEU28258.1| DNA-directed RNA polymerase subunit omega [Lactobacillus
crispatus MV-1A-US]
gi|260572971|gb|EEX29530.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
crispatus MV-3A-US]
gi|290923124|gb|EFE00053.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
crispatus 214-1]
gi|295031301|emb|CBL50780.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
crispatus ST1]
gi|312276769|gb|ADQ59409.1| DNA-directed RNA polymerase subunit omega [Lactobacillus
amylovorus GRL 1112]
gi|325333682|gb|ADZ07590.1| DNA-directed RNA polymerase subunit omega [Lactobacillus
acidophilus 30SC]
gi|327183841|gb|AEA32288.1| DNA-directed RNA polymerase subunit omega [Lactobacillus
amylovorus GRL 1118]
Length = 74
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 3 RTT---VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK-DKNTVVALREIASGTL 58
R T ++ + +VD+R+ L +LA+ R L G PT++ K DK AL EIA+G +
Sbjct: 2 RITYPSIDKLLSRVDSRYSLSVLAAKRAHELEAGDPPTLEHFKCDKAVGKALEEIAAGKV 61
Query: 59 SPD 61
+ D
Sbjct: 62 TVD 64
>gi|227530536|ref|ZP_03960585.1| DNA-directed RNA polymerase [Lactobacillus vaginalis ATCC 49540]
gi|227349542|gb|EEJ39833.1| DNA-directed RNA polymerase [Lactobacillus vaginalis ATCC 49540]
Length = 72
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSPD 61
V++ + ++D+R+ LV+LAS R L +G+ P +D K AL EI + ++ D
Sbjct: 7 VDELLKRIDSRYSLVMLASKRAHELERGSAPLLDHYYSSKPVGKALEEIEADKVTID 63
>gi|116333606|ref|YP_795133.1| DNA-directed RNA polymerase, subunit K/omega [Lactobacillus
brevis ATCC 367]
gi|122269707|sp|Q03RS0|RPOZ_LACBA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|116098953|gb|ABJ64102.1| DNA-directed RNA polymerase, subunit K/omega [Lactobacillus
brevis ATCC 367]
Length = 71
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV-DVGKDKNTVVALREIASGTLSPDDLE 64
V+D + +VD+R+ L++LAS R L G+KP + D K AL EIA+G L D E
Sbjct: 7 VDDLLAQVDSRYSLIMLASKRAHELDAGSKPLLTDYKSPKTIGRALEEIAAGALMIDPDE 66
Query: 65 EDF 67
+D
Sbjct: 67 KDL 69
>gi|24378964|ref|NP_720919.1| DNA-directed RNA polymerase subunit omega [Streptococcus mutans
UA159]
gi|32171641|sp|Q8DVK5|RPOZ_STRMU RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|24376853|gb|AAN58225.1|AE014894_2 RNA polymerase-associated protein RpoZ, omega subunit
[Streptococcus mutans UA159]
Length = 105
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA PT K T+ AL EI +G +
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILQAKRAHELESGATPTQAFTSVKPTLQALEEIEAGNVVI 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|331701501|ref|YP_004398460.1| DNA-directed RNA polymerase subunit omega [Lactobacillus buchneri
NRRL B-30929]
gi|329128844|gb|AEB73397.1| DNA-directed RNA polymerase subunit omega [Lactobacillus buchneri
NRRL B-30929]
Length = 70
Score = 53.7 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTLSPD 61
V+ +DK+D+R+ L+ L+S R L GAKP +D K + +V AL EIA+G L D
Sbjct: 7 VDKLLDKIDSRYSLIALSSKRAHELDAGAKPLLDHYKSQKSVGKALEEIAAGVLKID 63
>gi|227893306|ref|ZP_04011111.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
ultunensis DSM 16047]
gi|227864886|gb|EEJ72307.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
ultunensis DSM 16047]
Length = 74
Score = 53.7 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 3 RTT---VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK-DKNTVVALREIASGTL 58
R T ++ + +VD+R+ L +LA+ R L G PT++ K DK AL EIA+G +
Sbjct: 2 RITYPSIDKLLSRVDSRYSLSVLAAKRAHELEAGDPPTLEKFKCDKAVGKALEEIAAGKV 61
Query: 59 SPD 61
+ D
Sbjct: 62 TVD 64
>gi|258645372|ref|ZP_05732841.1| DNA-directed RNA polymerase, omega subunit [Dialister invisus DSM
15470]
gi|260402721|gb|EEW96268.1| DNA-directed RNA polymerase, omega subunit [Dialister invisus DSM
15470]
Length = 66
Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
+ KVD ++ LV LA+ R R L+ G+ +D K VAL EI +S
Sbjct: 11 VKKVDTKYTLVTLAALRARELTDGSPALLDDKGKKTVTVALEEIYHDKISY 61
>gi|150390549|ref|YP_001320598.1| DNA-directed RNA polymerase, omega subunit [Alkaliphilus
metalliredigens QYMF]
gi|189043967|sp|A6TRX1|RPOZ_ALKMQ RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|149950411|gb|ABR48939.1| DNA-directed RNA polymerase, omega subunit [Alkaliphilus
metalliredigens QYMF]
Length = 68
Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + ++ + + VD+R+ LV+ + R R + GAK VD +K A +EI G ++
Sbjct: 1 MLKPSINELLTVVDSRYSLVVATAKRARQIIDGAKIKVDSDSNKPVSTAAKEIYEGKVTY 60
Query: 61 DDLEED 66
+ED
Sbjct: 61 IKTDED 66
>gi|238927503|ref|ZP_04659263.1| DNA-directed RNA polymerase [Selenomonas flueggei ATCC 43531]
gi|304437416|ref|ZP_07397375.1| DNA-directed RNA polymerase subunit omega [Selenomonas sp. oral
taxon 149 str. 67H29BP]
gi|238884785|gb|EEQ48423.1| DNA-directed RNA polymerase [Selenomonas flueggei ATCC 43531]
gi|304369672|gb|EFM23338.1| DNA-directed RNA polymerase subunit omega [Selenomonas sp. oral
taxon 149 str. 67H29BP]
Length = 76
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKD-KNTVVALREIASGTLSPDDLEED 66
+ KVD+R+ +V+LA+ R R + +G + + KN A EIA G +S + E
Sbjct: 18 MTKVDSRYGMVVLAAKRARQILEGDPIKSERARSTKNVTNAFEEIAEGKISYNLCMES 75
>gi|111224603|ref|YP_715397.1| DNA-directed RNA polymerase subunit omega [Frankia alni ACN14a]
gi|123044083|sp|Q0RF85|RPOZ_FRAAA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|111152135|emb|CAJ63862.1| DNA-directed RNA polymerase omega chain (RNAP omega subunit)
(Transcriptase omega chain) (RNA polymerase omega
subunit) [Frankia alni ACN14a]
Length = 94
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGK--DKNTVVALRE 52
+++ ++ D+++ LV+ A+ R R ++ P V+ +K +ALRE
Sbjct: 16 IDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVETTNAQEKPLSIALRE 75
Query: 53 IASGTLSPDDLEEDF 67
I +G L+ + + +
Sbjct: 76 INAGLLTHETVSDSL 90
>gi|168186794|ref|ZP_02621429.1| DNA-directed RNA polymerase, omega subunit [Clostridium botulinum
C str. Eklund]
gi|169295168|gb|EDS77301.1| DNA-directed RNA polymerase, omega subunit [Clostridium botulinum
C str. Eklund]
Length = 73
Score = 53.3 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKD-KNTVVALREIASGTLSPDDLEE 65
+ KVDNR+ LV + S R R + G + V+V K A+ E+ + +S + L E
Sbjct: 14 LTKVDNRYSLVTVTSRRARQIIDGDEALVNVEDAYKPLTTAIHEVNAEKVSYESLVE 70
>gi|57238145|ref|YP_179395.1| DNA-directed RNA polymerase subunit omega [Campylobacter jejuni
RM1221]
gi|86150087|ref|ZP_01068315.1| DNA-directed RNA polymerase, omega subunit [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|86150717|ref|ZP_01068933.1| DNA-directed RNA polymerase, omega subunit [Campylobacter jejuni
subsp. jejuni 260.94]
gi|86152569|ref|ZP_01070774.1| DNA-directed RNA polymerase, omega subunit [Campylobacter jejuni
subsp. jejuni HB93-13]
gi|88596720|ref|ZP_01099957.1| DNA-directed RNA polymerase, omega subunit [Campylobacter jejuni
subsp. jejuni 84-25]
gi|121613074|ref|YP_001000949.1| DNA-directed RNA polymerase subunit omega [Campylobacter jejuni
subsp. jejuni 81-176]
gi|148926263|ref|ZP_01809948.1| putative DNA-directed RNA polymerase omega chain [Campylobacter
jejuni subsp. jejuni CG8486]
gi|153951415|ref|YP_001397637.1| DNA-directed RNA polymerase subunit omega [Campylobacter jejuni
subsp. doylei 269.97]
gi|157415537|ref|YP_001482793.1| DNA-directed RNA polymerase subunit omega [Campylobacter jejuni
subsp. jejuni 81116]
gi|167005859|ref|ZP_02271617.1| DNA-directed RNA polymerase subunit omega [Campylobacter jejuni
subsp. jejuni 81-176]
gi|218562885|ref|YP_002344664.1| DNA-directed RNA polymerase subunit omega [Campylobacter jejuni
subsp. jejuni NCTC 11168]
gi|283956668|ref|ZP_06374147.1| DNA-directed RNA polymerase subunit omega [Campylobacter jejuni
subsp. jejuni 1336]
gi|13959496|sp|Q9PN25|RPOZ_CAMJE RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|81557440|sp|Q5HTJ0|RPOZ_CAMJR RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166229412|sp|A7H2A7|RPOZ_CAMJD RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166229413|sp|A1W0Q8|RPOZ_CAMJJ RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|172047169|sp|A8FMX9|RPOZ_CAMJ8 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|57166949|gb|AAW35728.1| DNA-directed RNA polymerase, omega subunit [Campylobacter jejuni
RM1221]
gi|85839533|gb|EAQ56794.1| DNA-directed RNA polymerase, omega subunit [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|85841887|gb|EAQ59133.1| DNA-directed RNA polymerase, omega subunit [Campylobacter jejuni
subsp. jejuni 260.94]
gi|85843454|gb|EAQ60664.1| DNA-directed RNA polymerase, omega subunit [Campylobacter jejuni
subsp. jejuni HB93-13]
gi|87249555|gb|EAQ72514.1| DNA-directed RNA polymerase, omega subunit [Campylobacter jejuni
subsp. jejuni 81-176]
gi|88191561|gb|EAQ95533.1| DNA-directed RNA polymerase, omega subunit [Campylobacter jejuni
subsp. jejuni 84-25]
gi|112360591|emb|CAL35388.1| putative DNA-directed RNA polymerase omega chain [Campylobacter
jejuni subsp. jejuni NCTC 11168]
gi|145845434|gb|EDK22527.1| putative DNA-directed RNA polymerase omega chain [Campylobacter
jejuni subsp. jejuni CG8486]
gi|152938861|gb|ABS43602.1| DNA-directed RNA polymerase, omega subunit [Campylobacter jejuni
subsp. doylei 269.97]
gi|157386501|gb|ABV52816.1| DNA-directed RNA polymerase subunit omega [Campylobacter jejuni
subsp. jejuni 81116]
gi|283791917|gb|EFC30707.1| DNA-directed RNA polymerase subunit omega [Campylobacter jejuni
subsp. jejuni 1336]
gi|284926498|gb|ADC28850.1| DNA-directed RNA polymerase subunit omega [Campylobacter jejuni
subsp. jejuni IA3902]
gi|315058706|gb|ADT73035.1| DNA-directed RNA polymerase omega subunit [Campylobacter jejuni
subsp. jejuni S3]
gi|315927101|gb|EFV06452.1| DNA-directed RNA polymerase, omega subunit [Campylobacter jejuni
subsp. jejuni DFVF1099]
gi|315929602|gb|EFV08786.1| DNA-directed RNA polymerase, omega subunit [Campylobacter jejuni
subsp. jejuni 305]
gi|315932423|gb|EFV11366.1| DNA-directed RNA polymerase, omega subunit [Campylobacter jejuni
subsp. jejuni 327]
Length = 74
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 10 IDKVDN-RFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV--VALREIASGTLSPDDLEED 66
++K+ N R+ L L+ + R L+ GA P VD K+KN + +AL EIA ++ + L E
Sbjct: 13 LEKMGNDRYRLSLVVAKRAEQLANGATPLVDFDKNKNKLADIALYEIAENKITLEGLVET 72
>gi|268679286|ref|YP_003303717.1| DNA-directed RNA polymerase subunit omega [Sulfurospirillum
deleyianum DSM 6946]
gi|268617317|gb|ACZ11682.1| DNA-directed RNA polymerase, omega subunit [Sulfurospirillum
deleyianum DSM 6946]
Length = 71
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 15 NRFLLVLLASHRTRHLSQGAKPTVDVGKDKN--TVVALREIASGTLSPDDLEE 65
+R+ LV++ S R LS GA+P + K+K T +AL EIA G + D + +
Sbjct: 18 DRYKLVMMVSKRADQLSNGAEPLIKADKNKQKFTDIALLEIAEGKIRLDSITD 70
>gi|312864927|ref|ZP_07725157.1| DNA-directed RNA polymerase, omega subunit [Streptococcus downei
F0415]
gi|311099547|gb|EFQ57761.1| DNA-directed RNA polymerase, omega subunit [Streptococcus downei
F0415]
Length = 105
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M R +++ +D++ +++ L +L + R L +GAKPT K T+ AL EI SG ++
Sbjct: 2 MLRPSIDTLLDRIPSKYSLCILQAKRAHELEEGAKPTQGFKSVKATLQALEEIESGNVTI 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|108884783|sp|Q2J841|RPOZ_FRASC RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
Length = 94
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGK--DKNTVVALRE 52
+++ ++ D+++ LV+ A+ R R ++ P V+ +K +ALRE
Sbjct: 16 IDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVETTNAQEKPLSIALRE 75
Query: 53 IASGTLSPDDLEEDF 67
I +G L+ + + +
Sbjct: 76 INAGLLTHETVADSL 90
>gi|187932902|ref|YP_001885410.1| DNA-directed RNA polymerase, omega subunit [Clostridium botulinum
B str. Eklund 17B]
gi|226703111|sp|B2THR8|RPOZ_CLOBB RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|187721055|gb|ACD22276.1| DNA-directed RNA polymerase, omega subunit [Clostridium botulinum
B str. Eklund 17B]
Length = 66
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDD 62
D + KV +R+ LV+L S R R + +GA+P V K +A+ E+ + ++
Sbjct: 12 DLLTKVGDRYSLVILTSKRAREIIEGAEPLTKVDSHKPLTIAINEVNEDIVKYEE 66
>gi|259503547|ref|ZP_05746449.1| DNA-directed RNA polymerase subunit omega [Lactobacillus antri
DSM 16041]
gi|259168625|gb|EEW53120.1| DNA-directed RNA polymerase subunit omega [Lactobacillus antri
DSM 16041]
Length = 72
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSPD 61
V++ + ++D+R+ LV+LAS R L GA P +D K+ AL EI + ++ D
Sbjct: 7 VDELLKRIDSRYSLVMLASKRAHELDNGAAPLLDHYESSKSVGKALEEILADKVTID 63
>gi|270290375|ref|ZP_06196600.1| DNA-directed RNA polymerase, omega subunit [Pediococcus
acidilactici 7_4]
gi|304384747|ref|ZP_07367093.1| DNA-directed RNA polymerase subunit omega [Pediococcus
acidilactici DSM 20284]
gi|270281156|gb|EFA26989.1| DNA-directed RNA polymerase, omega subunit [Pediococcus
acidilactici 7_4]
gi|304328941|gb|EFL96161.1| DNA-directed RNA polymerase subunit omega [Pediococcus
acidilactici DSM 20284]
Length = 69
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSPDDLE 64
V+ +++VD+R+ L++LAS R L +GA +D KN AL EI +G + D E
Sbjct: 7 VDKLLERVDSRYSLIMLASKRAHQLDEGAPELLDHYSSHKNVGKALEEIVAGDVVIDPNE 66
Query: 65 EDF 67
+D
Sbjct: 67 KDL 69
>gi|290581018|ref|YP_003485410.1| RNA polymerase-associated protein RpoZ omega subunit
[Streptococcus mutans NN2025]
gi|254997917|dbj|BAH88518.1| RNA polymerase-associated protein RpoZ omega subunit
[Streptococcus mutans NN2025]
Length = 105
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA PT K T+ AL EI +G +
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILQAKRAHELESGATPTQAFTSVKPTLQALEEIETGNVVI 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|309807746|ref|ZP_07701680.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus iners
LactinV 01V1-a]
gi|312871922|ref|ZP_07732004.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus iners
LEAF 2062A-h1]
gi|308169006|gb|EFO71090.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus iners
LactinV 01V1-a]
gi|311092499|gb|EFQ50861.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus iners
LEAF 2062A-h1]
Length = 72
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-PTVDVGKDKNTVVALREIASGTLSPDDLE 64
++ +D+V++R+ L +LA+ R+ L G + K AL EIA+G ++ D
Sbjct: 8 IDKLLDRVNSRYSLSVLAAKRSHELQSGEPGALLSYKSSKALGQALEEIAAGKVTIDPEH 67
Query: 65 EDFIH 69
+ I
Sbjct: 68 QTKID 72
>gi|312869922|ref|ZP_07730061.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus oris
PB013-T2-3]
gi|311094507|gb|EFQ52812.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus oris
PB013-T2-3]
Length = 72
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSPD 61
V++ + ++D+R+ LV+LAS R L GA P ++ K+ AL EI + ++ D
Sbjct: 7 VDELLKRIDSRYSLVMLASKRAHELDNGAAPLLEHYESSKSVGKALEEILADKVTID 63
>gi|259047046|ref|ZP_05737447.1| DNA-directed RNA polymerase, omega subunit [Granulicatella
adiacens ATCC 49175]
gi|259036096|gb|EEW37351.1| DNA-directed RNA polymerase, omega subunit [Granulicatella
adiacens ATCC 49175]
Length = 71
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLSPDD 62
++ + K+D+++ LV+L+S R L P ++ KN AL EIA+G L+ +
Sbjct: 7 IDKLLKKIDSKYSLVILSSKRAHELHHHEPPLLESYESHKNVGRALEEIAAGKLTIRE 64
>gi|289422312|ref|ZP_06424162.1| DNA-directed RNA polymerase, omega subunit [Peptostreptococcus
anaerobius 653-L]
gi|289157257|gb|EFD05872.1| DNA-directed RNA polymerase, omega subunit [Peptostreptococcus
anaerobius 653-L]
Length = 88
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVG-KDKNTVVALREIASGTLSPDDLEED 66
D ++K+DNR+ L+ S R R + +KP +D KDK VVA EI +G +S L +
Sbjct: 8 DIVEKIDNRYYLIATVSKRAREIVDNSKPLIDADEKDKPVVVASEEIIAGKVSYRLLTNE 67
Query: 67 FIHSLQKHVEIDEPDSPTENS 87
I ++ ++++ E
Sbjct: 68 EIEEKERVHKLEQERKLLEQE 88
>gi|288918228|ref|ZP_06412583.1| DNA-directed RNA polymerase, omega subunit [Frankia sp. EUN1f]
gi|288350398|gb|EFC84620.1| DNA-directed RNA polymerase, omega subunit [Frankia sp. EUN1f]
Length = 134
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGK--DKNTVVALRE 52
+++ ++ D+++ LV+ A+ R R ++ P V+ +K +ALRE
Sbjct: 56 IDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVETTSAQEKPLSIALRE 115
Query: 53 IASGTLSPDDLEEDF 67
I SG L+ + + +
Sbjct: 116 INSGLLTHETITDPL 130
>gi|295425224|ref|ZP_06817927.1| DNA-directed RNA polymerase subunit omega [Lactobacillus
amylolyticus DSM 11664]
gi|295065000|gb|EFG55905.1| DNA-directed RNA polymerase subunit omega [Lactobacillus
amylolyticus DSM 11664]
Length = 74
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 3 RTT---VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK-DKNTVVALREIASGTL 58
R T ++ + +VD+R+ L +LA+ R L G PT+ K DK AL EI +G +
Sbjct: 2 RITYPSIDKLLSRVDSRYSLSVLAAKRAHELEAGDPPTLKSFKCDKAVGKALEEIVAGKV 61
Query: 59 SPD 61
+ D
Sbjct: 62 TVD 64
>gi|256832549|ref|YP_003161276.1| DNA-directed RNA polymerase, omega subunit [Jonesia denitrificans
DSM 20603]
gi|256686080|gb|ACV08973.1| DNA-directed RNA polymerase, omega subunit [Jonesia denitrificans
DSM 20603]
Length = 90
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
++D + KVD+++ LV+ ++ R R ++ P V+ + + +A+REI
Sbjct: 16 IDDLLGKVDSKYALVIYSAKRARQINAYYSQLSEGLLEFVGPLVETENQEKPLSIAMREI 75
Query: 54 ASGTLSPDDLEE 65
G L+ + E+
Sbjct: 76 NQGLLTLEATED 87
>gi|283954837|ref|ZP_06372353.1| DNA-directed RNA polymerase, omega subunit [Campylobacter jejuni
subsp. jejuni 414]
gi|283793677|gb|EFC32430.1| DNA-directed RNA polymerase, omega subunit [Campylobacter jejuni
subsp. jejuni 414]
Length = 74
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 10 IDKVDN-RFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV--VALREIASGTLSPDDLEED 66
++K+ N R+ L L+ + R L+ GA P VD K+KN + +AL EIA ++ + L E
Sbjct: 13 LEKMGNDRYRLSLVVAKRAEQLANGAIPLVDFDKNKNKLADIALYEIAENKITLEGLVET 72
>gi|332976425|gb|EGK13273.1| DNA-directed RNA polymerase subunit omega [Desmospora sp. 8437]
Length = 69
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
++ + K D+++ LV+LA+ R R L GA P + K+ VAL EI L P
Sbjct: 6 IDKLMSKADSKYTLVILAAKRARQLLDGATPDLQPRSHKHVGVALEEIVEDYLVP 60
>gi|297516516|ref|ZP_06934902.1| DNA-directed RNA polymerase, omega subunit, putative [Escherichia
coli OP50]
Length = 27
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRT 27
MAR TV+D ++K+ NRF LVL+A+ R
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRA 27
>gi|55821416|ref|YP_139858.1| DNA-directed RNA polymerase subunit omega [Streptococcus
thermophilus LMG 18311]
gi|55823341|ref|YP_141782.1| DNA-directed RNA polymerase subunit omega [Streptococcus
thermophilus CNRZ1066]
gi|116628138|ref|YP_820757.1| DNA-directed RNA polymerase subunit omega [Streptococcus
thermophilus LMD-9]
gi|81559162|sp|Q5LYX2|RPOZ_STRT1 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|81560357|sp|Q5M3I5|RPOZ_STRT2 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|122267266|sp|Q03JR1|RPOZ_STRTD RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|55737401|gb|AAV61043.1| DNA-directed RNA polymerase, omega subunit, putative [Streptococcus
thermophilus LMG 18311]
gi|55739326|gb|AAV62967.1| DNA-directed RNA polymerase, omega subunit, putative [Streptococcus
thermophilus CNRZ1066]
gi|116101415|gb|ABJ66561.1| DNA-directed RNA polymerase, subunit K/omega [Streptococcus
thermophilus LMD-9]
Length = 104
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +R+ LV+L + R L+ GA+PT + K T+ AL EI SG +
Sbjct: 2 MLKPSIDKLLDKVPSRYSLVILQAKRAHELAAGAEPTQEFSSVKYTLQALEEIESGNVII 61
Query: 61 DDLEEDFIHSLQ-KHVEIDEPDSPTENSDFSWHKPEALSFGQM 102
E + K ++ E E ++
Sbjct: 62 HPNPEAKRKLARLKVIQARLAAEEEERKIKEQIAKEKEEGDKI 104
>gi|312278744|gb|ADQ63401.1| DNA-directed RNA polymerase subunit omega [Streptococcus
thermophilus ND03]
Length = 103
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +R+ LV+L + R L+ GA+PT + K T+ AL EI SG +
Sbjct: 1 MLKPSIDKLLDKVPSRYSLVILQAKRAHELAAGAEPTQEFSSVKYTLQALEEIESGNVII 60
Query: 61 DDLEEDFIHSLQ-KHVEIDEPDSPTENSDFSWHKPEALSFGQM 102
E + K ++ E E ++
Sbjct: 61 HPNPEAKRKLARLKVIQARLAAEEEERKIKEQIAKEKEEGDKI 103
>gi|116621470|ref|YP_823626.1| DNA-directed RNA polymerase subunit omega [Candidatus Solibacter
usitatus Ellin6076]
gi|116224632|gb|ABJ83341.1| DNA-directed RNA polymerase, omega subunit [Candidatus Solibacter
usitatus Ellin6076]
Length = 85
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 15 NRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPD 61
+ + +++A+ R R L GA+P + K TV+A+ E+ G + +
Sbjct: 21 STYRFIIVAAKRARQLQGGARPVLPTSSKKPTVIAMEEVRRGLVKYE 67
>gi|88608206|ref|YP_505941.1| DNA-directed RNA polymerase, omega subunit [Neorickettsia
sennetsu str. Miyayama]
gi|123736371|sp|Q2GF15|RPOZ_NEOSM RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|88600375|gb|ABD45843.1| DNA-directed RNA polymerase, omega subunit [Neorickettsia
sennetsu str. Miyayama]
Length = 128
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 15 NRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSPDDLEEDFIHSL 71
+RF LV+LAS R L G+ P V DK+ V+AL+E+ S ++ + L I +
Sbjct: 15 SRFELVILASQRAYDLQSGSLPDVQHEESDKSPVIALKELYSLSMDYEKLFHAAIRRI 72
>gi|195978663|ref|YP_002123907.1| DNA-directed RNA polymerase subunit omega [Streptococcus equi
subsp. zooepidemicus MGCS10565]
gi|225868015|ref|YP_002743963.1| DNA-directed RNA polymerase omega chain [Streptococcus equi
subsp. zooepidemicus]
gi|226703179|sp|B4U4H7|RPOZ_STREM RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|259494510|sp|C0MH28|RPOZ_STRS7 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|195975368|gb|ACG62894.1| DNA-directed RNA polymerase omega subunit RpoZ [Streptococcus
equi subsp. zooepidemicus MGCS10565]
gi|225701291|emb|CAW98288.1| DNA-directed RNA polymerase omega chain [Streptococcus equi
subsp. zooepidemicus]
Length = 105
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA PT K+T+ AL EI SG +
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILQAKRAHELEAGATPTQAFKSVKSTLQALEEIESGNVVI 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|225871067|ref|YP_002747014.1| DNA-directed RNA polymerase omega chain [Streptococcus equi
subsp. equi 4047]
gi|254809260|sp|C0M782|RPOZ_STRE4 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|225700471|emb|CAW94894.1| DNA-directed RNA polymerase omega chain [Streptococcus equi
subsp. equi 4047]
Length = 105
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA PT K+T+ AL EI SG +
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILQAKRAHELEAGAAPTQSFKSVKSTLQALEEIESGNVVI 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|269795110|ref|YP_003314565.1| DNA-directed RNA polymerase subunit omega [Sanguibacter keddieii
DSM 10542]
gi|269097295|gb|ACZ21731.1| DNA-directed RNA polymerase subunit omega [Sanguibacter keddieii
DSM 10542]
Length = 94
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 12/74 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
++D +D+ D+++ LV+ ++ R R ++ P V+ + + +A+REI
Sbjct: 16 IDDLLDRADSKYALVIYSAKRARQINAYYSQLHEGLLEFVGPLVETRNQEKPLSIAMREI 75
Query: 54 ASGTLSPDDLEEDF 67
+G L+ + +E+
Sbjct: 76 NAGLLTINPIEQPA 89
>gi|116629416|ref|YP_814588.1| DNA-directed RNA polymerase, subunit K/omega [Lactobacillus
gasseri ATCC 33323]
gi|238852565|ref|ZP_04642975.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus gasseri
202-4]
gi|282850882|ref|ZP_06260256.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus gasseri
224-1]
gi|300361954|ref|ZP_07058131.1| DNA-directed RNA polymerase subunit omega [Lactobacillus gasseri
JV-V03]
gi|311110934|ref|ZP_07712331.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus gasseri
MV-22]
gi|122273646|sp|Q044H2|RPOZ_LACGA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|116094998|gb|ABJ60150.1| DNA-directed RNA polymerase subunit omega [Lactobacillus gasseri
ATCC 33323]
gi|238834711|gb|EEQ26938.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus gasseri
202-4]
gi|282557834|gb|EFB63422.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus gasseri
224-1]
gi|300354573|gb|EFJ70444.1| DNA-directed RNA polymerase subunit omega [Lactobacillus gasseri
JV-V03]
gi|311066088|gb|EFQ46428.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus gasseri
MV-22]
Length = 72
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-PTVDVGKDKNTVVALREIASGTLSPD 61
++ + +V++R+ L +LA+ R + GA DK AL EIA+G ++ D
Sbjct: 8 IDKLLSRVNSRYSLSVLAAKRAHEIQAGAPLALKHYKSDKAVGKALEEIAAGKVTID 64
>gi|126700207|ref|YP_001089104.1| DNA-directed RNA polymerase subunit omega [Clostridium difficile
630]
gi|254976179|ref|ZP_05272651.1| DNA-directed RNA polymerase omega chain [Clostridium difficile
QCD-66c26]
gi|255093568|ref|ZP_05323046.1| DNA-directed RNA polymerase omega chain [Clostridium difficile
CIP 107932]
gi|255101752|ref|ZP_05330729.1| DNA-directed RNA polymerase omega chain [Clostridium difficile
QCD-63q42]
gi|255307620|ref|ZP_05351791.1| DNA-directed RNA polymerase omega chain [Clostridium difficile
ATCC 43255]
gi|255315313|ref|ZP_05356896.1| DNA-directed RNA polymerase omega chain [Clostridium difficile
QCD-76w55]
gi|255517980|ref|ZP_05385656.1| DNA-directed RNA polymerase omega chain [Clostridium difficile
QCD-97b34]
gi|255651096|ref|ZP_05397998.1| DNA-directed RNA polymerase omega chain [Clostridium difficile
QCD-37x79]
gi|260684161|ref|YP_003215446.1| DNA-directed RNA polymerase subunit omega [Clostridium difficile
CD196]
gi|260687820|ref|YP_003218954.1| DNA-directed RNA polymerase subunit omega [Clostridium difficile
R20291]
gi|306520947|ref|ZP_07407294.1| DNA-directed RNA polymerase omega chain [Clostridium difficile
QCD-32g58]
gi|123174007|sp|Q182S6|RPOZ_CLOD6 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|115251644|emb|CAJ69477.1| DNA-directed RNA polymerase subunit omega (RNAP omega subunit)
(Transcriptase subunit omega) (RNA polymerase omega
subunit) [Clostridium difficile]
gi|260210324|emb|CBA64652.1| DNA-directed RNA polymerase omega chain [Clostridium difficile
CD196]
gi|260213837|emb|CBE05826.1| DNA-directed RNA polymerase omega chain [Clostridium difficile
R20291]
Length = 88
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTLSPDDLEEDFI 68
++K+DNR+ LV S R R L G +P V + V VA +E+ASG ++ L E+ I
Sbjct: 10 LEKIDNRYYLVGTVSKRARKLIDGEEPYVSNKTKEKPVCVATKEVASGKITYRLLTEEEI 69
Query: 69 HSLQKHVEIDEPDSPTENS 87
+ ++ +E
Sbjct: 70 EIEEARHHAEQHQQISEEE 88
>gi|228477115|ref|ZP_04061753.1| DNA-directed RNA polymerase subunit omega [Streptococcus salivarius
SK126]
gi|228251134|gb|EEK10305.1| DNA-directed RNA polymerase subunit omega [Streptococcus salivarius
SK126]
Length = 103
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L+ GA+PT + K T+ AL EI SG ++
Sbjct: 1 MLKPSIDKLLDKVPSKYSLVILQAKRAHELAAGAEPTQEFTSVKPTLQALEEIESGNVTI 60
Query: 61 DDLEEDFIHSLQ-KHVEIDEPDSPTENSDFSWHKPEALSFGQM 102
E + K ++ E E ++
Sbjct: 61 HPDPESKRELARLKVIQARLAAEEEERKIKEQIAKEKEEGDKI 103
>gi|15894996|ref|NP_348345.1| DNA-directed RNA polymerase subunit omega [Clostridium
acetobutylicum ATCC 824]
gi|20978717|sp|Q97IC9|RPOZ_CLOAB RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|15024685|gb|AAK79685.1|AE007681_6 RNA polymerase-associated protein RpoZ, omega subunit (YLOH
B.subtilis ortholog) [Clostridium acetobutylicum ATCC
824]
gi|325509133|gb|ADZ20769.1| DNA-directed RNA polymerase subunit omega [Clostridium
acetobutylicum EA 2018]
Length = 72
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPD 61
V D K +R+ LV++ S R R + G +P VD+ +K +A+ E+ + D
Sbjct: 10 VVDLKAKTGDRYSLVVITSKRARQIIAGEEPLVDIESNKALTIAINEVDQDKIKFD 65
>gi|313764287|gb|EFS35651.1| guanylate kinase [Propionibacterium acnes HL013PA1]
gi|327454047|gb|EGF00702.1| guanylate kinase [Propionibacterium acnes HL083PA2]
gi|328753305|gb|EGF66921.1| guanylate kinase [Propionibacterium acnes HL025PA2]
Length = 325
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREIASGT 57
++ VD+++ LVL A+ R R ++ P V+ + + +A+REI +G
Sbjct: 228 LEHVDSKYRLVLFAAKRARQINAYYSQLAEGLLENVGPLVETTNQEKPLSIAMREIQAGV 287
Query: 58 LSPDDLE 64
+ +++
Sbjct: 288 VEAHEMD 294
>gi|158320457|ref|YP_001512964.1| DNA-directed RNA polymerase, omega subunit [Alkaliphilus
oremlandii OhILAs]
gi|166991536|sp|A8MH81|RPOZ_ALKOO RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|158140656|gb|ABW18968.1| DNA-directed RNA polymerase, omega subunit [Alkaliphilus
oremlandii OhILAs]
Length = 71
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTL 58
+DKVD+R+ LV+ A+ R R L GA P +++ K V +A +EI +
Sbjct: 10 LDKVDSRYTLVVAAAKRARQLIDGAVPKIEMPYSKKPVSIATQEIYESYV 59
>gi|255656567|ref|ZP_05401976.1| DNA-directed RNA polymerase omega chain [Clostridium difficile
QCD-23m63]
gi|296449981|ref|ZP_06891745.1| DNA-directed RNA polymerase subunit omega [Clostridium difficile
NAP08]
gi|296878362|ref|ZP_06902370.1| DNA-directed RNA polymerase subunit omega [Clostridium difficile
NAP07]
gi|296261251|gb|EFH08082.1| DNA-directed RNA polymerase subunit omega [Clostridium difficile
NAP08]
gi|296430660|gb|EFH16499.1| DNA-directed RNA polymerase subunit omega [Clostridium difficile
NAP07]
Length = 88
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVG-KDKNTVVALREIASGTLSPDDLEEDFI 68
++K+DNR+ LV S R R L G +P V K+K VA +E+ASG ++ L E+ I
Sbjct: 10 LEKIDNRYYLVGTVSKRARKLIDGEEPYVSNKAKEKPVCVATKEVASGKITYRLLTEEEI 69
Query: 69 HSLQKHVEIDEPDSPTENS 87
+ ++ +E
Sbjct: 70 EIEEARHHAEQHQQISEEE 88
>gi|302874745|ref|YP_003843378.1| DNA-directed RNA polymerase, omega subunit [Clostridium
cellulovorans 743B]
gi|307690640|ref|ZP_07633086.1| DNA-directed RNA polymerase, omega subunit [Clostridium
cellulovorans 743B]
gi|302577602|gb|ADL51614.1| DNA-directed RNA polymerase, omega subunit [Clostridium
cellulovorans 743B]
Length = 73
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPD 61
DK +R+ LV++AS R R L G +P V V K VA+ E+ G + +
Sbjct: 15 DKSGDRYSLVVIASKRARLLIDGDEPLVKVTSKKPLTVAINEVNEGKIQFE 65
>gi|227890279|ref|ZP_04008084.1| DNA-directed RNA polymerase omega subunit [Lactobacillus
johnsonii ATCC 33200]
gi|227849093|gb|EEJ59179.1| DNA-directed RNA polymerase omega subunit [Lactobacillus
johnsonii ATCC 33200]
Length = 72
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-PTVDVGKDKNTVVALREIASGTLSPD 61
++ + +V++R+ L +LA+ R + GA DK AL EIA+G ++ D
Sbjct: 8 IDKLLSRVNSRYSLSVLAAKRAHEIQAGAPLALKHYKSDKAVGEALEEIAAGKVTID 64
>gi|188585956|ref|YP_001917501.1| DNA-directed RNA polymerase, omega subunit [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179350643|gb|ACB84913.1| DNA-directed RNA polymerase, omega subunit [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 63
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 33/56 (58%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPD 61
V++ +++V++++ LV+ + R R + G+ V+ K+ VAL+EI + L+
Sbjct: 6 VDNLVEQVESKYSLVIAVAKRAREIVDGSPSLVENKSPKSVTVALKEIDANKLNYH 61
>gi|222529028|ref|YP_002572910.1| DNA-directed RNA polymerase subunit omega [Caldicellulosiruptor
bescii DSM 6725]
gi|312127910|ref|YP_003992784.1| DNA-directed RNA polymerase subunit omega [Caldicellulosiruptor
hydrothermalis 108]
gi|312134882|ref|YP_004002220.1| DNA-directed RNA polymerase subunit omega [Caldicellulosiruptor
owensensis OL]
gi|312793223|ref|YP_004026146.1| DNA-directed RNA polymerase subunit omega [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312876965|ref|ZP_07736940.1| DNA-directed RNA polymerase, omega subunit [Caldicellulosiruptor
lactoaceticus 6A]
gi|222455875|gb|ACM60137.1| DNA-directed RNA polymerase, omega subunit [Caldicellulosiruptor
bescii DSM 6725]
gi|311774933|gb|ADQ04420.1| DNA-directed RNA polymerase, omega subunit [Caldicellulosiruptor
owensensis OL]
gi|311777929|gb|ADQ07415.1| DNA-directed RNA polymerase, omega subunit [Caldicellulosiruptor
hydrothermalis 108]
gi|311796280|gb|EFR12634.1| DNA-directed RNA polymerase, omega subunit [Caldicellulosiruptor
lactoaceticus 6A]
gi|312180363|gb|ADQ40533.1| DNA-directed RNA polymerase, omega subunit [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 77
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK---DKNTVVALREIASGTLSPDDLE 64
+ VDN++ L +L + R R L Q A+ VD+ DK +A+ E+ASG +S ++
Sbjct: 11 LKYVDNKYTLSVLVAKRARQLLQQAQKKVDITNFNSDKYVTMAVNEVASGKISYKYVK 68
>gi|296269340|ref|YP_003651972.1| DNA-directed RNA polymerase, omega subunit [Thermobispora bispora
DSM 43833]
gi|296092127|gb|ADG88079.1| DNA-directed RNA polymerase, omega subunit [Thermobispora bispora
DSM 43833]
Length = 88
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 12/64 (18%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREIASGT 57
+D VD+++ LV++A+ R R ++ P V+ ++K +ALREIA G
Sbjct: 20 LDVVDSKYSLVIMAAKRARQINAYYSQLGEGLLEYVGPLVETHAQEKPLSIALREIAEGL 79
Query: 58 LSPD 61
+ +
Sbjct: 80 IKAE 83
>gi|312622716|ref|YP_004024329.1| DNA-directed RNA polymerase subunit omega [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203183|gb|ADQ46510.1| DNA-directed RNA polymerase, omega subunit [Caldicellulosiruptor
kronotskyensis 2002]
Length = 77
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK---DKNTVVALREIASGTLSPDDLEED 66
+ VDN++ L +L + R R L Q A+ VD+ DK +A+ E+ASG +S ++
Sbjct: 11 LKFVDNKYTLSVLVAKRARQLLQQAQKKVDITNFNSDKYVTMAVNEVASGKISYKYVKPV 70
Query: 67 FIHSLQK 73
+ ++K
Sbjct: 71 KKYEIKK 77
>gi|302872128|ref|YP_003840764.1| DNA-directed RNA polymerase, omega subunit [Caldicellulosiruptor
obsidiansis OB47]
gi|302574987|gb|ADL42778.1| DNA-directed RNA polymerase, omega subunit [Caldicellulosiruptor
obsidiansis OB47]
Length = 77
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK---DKNTVVALREIASGTLSPDDLE 64
+ VDN++ L +L + R R L Q A+ VD+ DK +A+ E+ASG +S ++
Sbjct: 11 LKYVDNKYTLSVLVAKRARQLLQQAQKKVDITNFNSDKYVTMAVNEVASGKISYKYVK 68
>gi|256379244|ref|YP_003102904.1| DNA-directed RNA polymerase, omega subunit [Actinosynnema mirum
DSM 43827]
gi|255923547|gb|ACU39058.1| DNA-directed RNA polymerase, omega subunit [Actinosynnema mirum
DSM 43827]
Length = 92
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
++D +++V +++ LV+ A+ R R ++ P V+ G ++K +ALREI
Sbjct: 22 IDDLLEQVSSKYALVIYAAKRARQINDYYAQLGEGLLEYVGPLVEPGPREKPLSIALREI 81
Query: 54 ASGTL 58
+G L
Sbjct: 82 HAGLL 86
>gi|257068647|ref|YP_003154902.1| DNA-directed RNA polymerase subunit omega [Brachybacterium faecium
DSM 4810]
gi|256559465|gb|ACU85312.1| DNA-directed RNA polymerase subunit omega [Brachybacterium faecium
DSM 4810]
Length = 120
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 18/100 (18%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGK-DKNTVVALREIASGT 57
++ VD+++ LVL S R R ++ P VDV +K+ +ALREI G
Sbjct: 20 LETVDSKYALVLYGSQRARQINAYYSQLSEGLLEFVGPLVDVENQEKSLSIALREIDEGL 79
Query: 58 LSPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEAL 97
L+ +++E+ ++ +EPD +
Sbjct: 80 LTVREIDEE------EYAAQNEPDPNAPAPLLLGDDAPEV 113
>gi|117928499|ref|YP_873050.1| DNA-directed RNA polymerase subunit omega [Acidothermus
cellulolyticus 11B]
gi|166229337|sp|A0LUF4|RPOZ_ACIC1 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|117648962|gb|ABK53064.1| DNA-directed RNA polymerase subunit omega [Acidothermus
cellulolyticus 11B]
Length = 87
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDV-GKDKNTVVALREI 53
+++ + DN++ LV+ A+ R R ++ P V+ +K +ALREI
Sbjct: 16 IDELLKVCDNKYALVIYAAKRARQINAYYAQLGEGLLEYVGPLVETYPTEKPLSIALREI 75
Query: 54 ASGTLSPDDLEE 65
+G L+ + +E+
Sbjct: 76 NAGLLTAEPIEQ 87
>gi|309810688|ref|ZP_07704496.1| DNA-directed RNA polymerase, omega subunit [Dermacoccus sp.
Ellin185]
gi|308435319|gb|EFP59143.1| DNA-directed RNA polymerase, omega subunit [Dermacoccus sp.
Ellin185]
Length = 87
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
++D ++ D+++ LV AS R R ++ P VD +DK +ALRE+
Sbjct: 16 IDDLLEIADSKYALVTYASKRARQINGYYSQLADGLLDNVGPLVDAQPQDKPLSIALREM 75
Query: 54 ASGTLSPDDLE 64
G LS + LE
Sbjct: 76 NEGLLSIEKLE 86
>gi|212696159|ref|ZP_03304287.1| hypothetical protein ANHYDRO_00695 [Anaerococcus hydrogenalis DSM
7454]
gi|212676788|gb|EEB36395.1| hypothetical protein ANHYDRO_00695 [Anaerococcus hydrogenalis DSM
7454]
Length = 62
Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDD 62
D + +R+ + ++A+ R R + G+ +DK AL EI G + +D
Sbjct: 8 DLAEISSSRYEICMMAAKRARRIVNGSDFLTKDHEDKPVTQALHEIMEGKVKKND 62
>gi|332799425|ref|YP_004460924.1| DNA-directed RNA polymerase subunit omega [Tepidanaerobacter sp.
Re1]
gi|332697160|gb|AEE91617.1| DNA-directed RNA polymerase subunit omega [Tepidanaerobacter sp.
Re1]
Length = 69
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 12 KVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLE 64
K D+++++ + A+ R R L +GAK V+V K +AL E+ +G + + ++
Sbjct: 12 KYDSKYIIAVAAAKRARQLVEGAKELVEVNTKKPVSIALFELDAGKILIERVK 64
>gi|42519414|ref|NP_965344.1| DNA-directed RNA polymerase omega subunit [Lactobacillus
johnsonii NCC 533]
gi|268319209|ref|YP_003292865.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
johnsonii FI9785]
gi|81667665|sp|Q74IM7|RPOZ_LACJO RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|41583702|gb|AAS09310.1| DNA-directed RNA polymerase omega subunit [Lactobacillus
johnsonii NCC 533]
gi|262397584|emb|CAX66598.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
johnsonii FI9785]
gi|329667061|gb|AEB93009.1| DNA-directed RNA polymerase omega subunit [Lactobacillus
johnsonii DPC 6026]
Length = 72
Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-PTVDVGKDKNTVVALREIASGTLSPD 61
++ + +V++R+ L +LA+ R + GA DK AL EIA+G ++ D
Sbjct: 8 IDKLLSRVNSRYSLSVLAAKRAHEIQAGAPLALKHYKSDKAVGEALEEIAAGKVTID 64
>gi|289643055|ref|ZP_06475186.1| DNA-directed RNA polymerase, omega subunit [Frankia symbiont of
Datisca glomerata]
gi|289507099|gb|EFD28067.1| DNA-directed RNA polymerase, omega subunit [Frankia symbiont of
Datisca glomerata]
Length = 94
Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGK--DKNTVVALRE 52
+++ ++ D+++ LV+ A+ R R ++ P VD +K +ALRE
Sbjct: 16 IDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVDTASAQEKPLSIALRE 75
Query: 53 IASGTLSPDDLEEDF 67
I +G L+ + + E
Sbjct: 76 INAGLLTHETVGEPL 90
>gi|302206256|gb|ADL10598.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
pseudotuberculosis C231]
Length = 95
Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTV-DVGKDKNTVVALREI 53
++D + KV +++ LV+ A+ R R ++ + P V ++K +ALREI
Sbjct: 26 IDDLLKKVSSKYALVIFAAKRARQINSYYQQADEGVFEFVGPLVTPEAQEKPLSIALREI 85
Query: 54 ASGTLSPDD 62
G L ++
Sbjct: 86 EQGLLDHEE 94
>gi|28378313|ref|NP_785205.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
plantarum WCFS1]
gi|254556520|ref|YP_003062937.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
plantarum JDM1]
gi|300767249|ref|ZP_07077161.1| DNA-directed RNA polymerase subunit omega [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308180463|ref|YP_003924591.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
plantarum subsp. plantarum ST-III]
gi|32171606|sp|Q88WL6|RPOZ_LACPL RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|28271148|emb|CAD64053.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
plantarum WCFS1]
gi|254045447|gb|ACT62240.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
plantarum JDM1]
gi|300495068|gb|EFK30224.1| DNA-directed RNA polymerase subunit omega [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308045954|gb|ADN98497.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
plantarum subsp. plantarum ST-III]
Length = 70
Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV-DVGKDKNTVVALREIASGTLSPD 61
V+D + +V++R+ L++LAS R L GA P + + K A+ EIA+G L D
Sbjct: 7 VDDLLKQVNSRYSLIMLASKRAHELDAGAAPMLSEYKSVKTIGRAMEEIAAGDLMID 63
>gi|116492593|ref|YP_804328.1| DNA-directed RNA polymerase, subunit K/omega [Pediococcus
pentosaceus ATCC 25745]
gi|122265943|sp|Q03FY6|RPOZ_PEDPA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|116102743|gb|ABJ67886.1| DNA-directed RNA polymerase subunit omega [Pediococcus
pentosaceus ATCC 25745]
Length = 69
Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLSPDDLE 64
V+D +++VD+R+ L++LAS R L +G +D KN AL E+ +G + D E
Sbjct: 7 VDDLLERVDSRYSLIMLASKRAHQLDEGQPELLDKYTSQKNVGKALEEVVAGDVIIDPNE 66
Query: 65 EDF 67
+D
Sbjct: 67 KDL 69
>gi|303238785|ref|ZP_07325317.1| DNA-directed RNA polymerase, omega subunit [Acetivibrio
cellulolyticus CD2]
gi|302593664|gb|EFL63380.1| DNA-directed RNA polymerase, omega subunit [Acetivibrio
cellulolyticus CD2]
Length = 68
Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
++KVD+R+ L +L R R L+ GA+ + K A E+ ++
Sbjct: 10 MEKVDSRYTLCILVGKRARQLTDGARSLTESSSSKVVTTAANEVNENMITY 60
>gi|300858544|ref|YP_003783527.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
pseudotuberculosis FRC41]
gi|300685998|gb|ADK28920.1| DNA-directed RNA polymerase omega subunit [Corynebacterium
pseudotuberculosis FRC41]
gi|302330814|gb|ADL21008.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
pseudotuberculosis 1002]
gi|308276498|gb|ADO26397.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
pseudotuberculosis I19]
Length = 92
Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTV-DVGKDKNTVVALREI 53
++D + KV +++ LV+ A+ R R ++ + P V ++K +ALREI
Sbjct: 23 IDDLLKKVSSKYALVIFAAKRARQINSYYQQADEGVFEFVGPLVTPEAQEKPLSIALREI 82
Query: 54 ASGTLSPDD 62
G L ++
Sbjct: 83 EQGLLDHEE 91
>gi|325846554|ref|ZP_08169469.1| DNA-directed RNA polymerase, omega subunit [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|325481312|gb|EGC84353.1| DNA-directed RNA polymerase, omega subunit [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 62
Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDD 62
D + +R+ + ++A+ R R + G+ +DK AL EI G + +D
Sbjct: 8 DLAEISSSRYEICMMAAKRARRIVNGSDLLTKDHEDKPVTQALHEIMEGKVKKND 62
>gi|260437091|ref|ZP_05790907.1| DNA-directed RNA polymerase, omega subunit [Butyrivibrio
crossotus DSM 2876]
gi|292810400|gb|EFF69605.1| DNA-directed RNA polymerase, omega subunit [Butyrivibrio
crossotus DSM 2876]
Length = 82
Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
+ +R+ LV+ S R R L GA+P V+ K +A+ E+ G +
Sbjct: 25 IQSRYSLVIATSKRARQLIAGAQPYVNGKGKKPLSIAVEELYKGKVKI 72
>gi|296877031|ref|ZP_06901073.1| DNA-directed RNA polymerase subunit omega [Streptococcus
parasanguinis ATCC 15912]
gi|296431975|gb|EFH17780.1| DNA-directed RNA polymerase subunit omega [Streptococcus
parasanguinis ATCC 15912]
Length = 104
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 46/101 (45%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA PT + K+T+ AL EI SG +
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILEAKRAHELESGAVPTQEFKSVKSTLQALEEIESGNVVV 61
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQ 101
E +L++ E + E + G+
Sbjct: 62 HPDPEAKREALRRRSEAERIRKEEEERKIKEQIAKEKEDGE 102
>gi|322412412|gb|EFY03320.1| DNA-directed RNA polymerase subunit omega [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
Length = 105
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA PT K+T+ AL EI SG +
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILQAKRAHELEAGATPTQGFKSVKSTLRALEEIESGNVVI 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|164687806|ref|ZP_02211834.1| hypothetical protein CLOBAR_01450 [Clostridium bartlettii DSM
16795]
gi|164603081|gb|EDQ96546.1| hypothetical protein CLOBAR_01450 [Clostridium bartlettii DSM
16795]
Length = 91
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVG--KDKNTVVALREIASGTL 58
M + ++ D ++K++NR+ LV + R R + G++ V+ ++K +A E+A G +
Sbjct: 1 MVKPSINDILEKINNRYYLVGTVAKRAREIVDGSEIYVENKQGENKPVCLASEEVAEGKI 60
Query: 59 SPDDLEEDFIH--SLQKHVEIDEPDSPTENS 87
+ L + I + H+E ++ E
Sbjct: 61 TYRLLTPEEIEQKEYEHHLEQEKQQKELEQD 91
>gi|238854796|ref|ZP_04645126.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
jensenii 269-3]
gi|260664027|ref|ZP_05864880.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
jensenii SJ-7A-US]
gi|282933874|ref|ZP_06339222.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
jensenii 208-1]
gi|313472305|ref|ZP_07812797.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
jensenii 1153]
gi|238832586|gb|EEQ24893.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
jensenii 269-3]
gi|239529844|gb|EEQ68845.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
jensenii 1153]
gi|260561913|gb|EEX27882.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
jensenii SJ-7A-US]
gi|281301963|gb|EFA94217.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
jensenii 208-1]
Length = 72
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLSPD 61
++ +D+VD+R+ L +LAS R L G+ ++ K+ AL EIA+G + D
Sbjct: 8 IDKLLDRVDSRYSLSVLASKRAHELEAGSPAALEKFKSSKSVGQALEEIAAGKVIID 64
>gi|320093615|ref|ZP_08025502.1| DNA-directed RNA polymerase subunit omega [Actinomyces sp. oral
taxon 178 str. F0338]
gi|319979438|gb|EFW10913.1| DNA-directed RNA polymerase subunit omega [Actinomyces sp. oral
taxon 178 str. F0338]
Length = 88
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 12/68 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQG-----------AKPTVDVGKDKNTV-VALREI 53
++D ++ VD+++ LV+ A+ R R ++ P V+ D+ + +ALREI
Sbjct: 16 IDDLLEHVDSKYALVIFAARRARQINLYNLQLAQNMIQFVGPVVETSPDEKPLAIALREI 75
Query: 54 ASGTLSPD 61
G L+ +
Sbjct: 76 DEGMLTLE 83
>gi|182439849|ref|YP_001827568.1| DNA-directed RNA polymerase subunit omega [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|239939918|ref|ZP_04691855.1| DNA-directed RNA polymerase subunit omega [Streptomyces
roseosporus NRRL 15998]
gi|239986403|ref|ZP_04707067.1| DNA-directed RNA polymerase subunit omega [Streptomyces
roseosporus NRRL 11379]
gi|282866200|ref|ZP_06275247.1| DNA-directed RNA polymerase, omega subunit [Streptomyces sp.
ACTE]
gi|291443349|ref|ZP_06582739.1| RNA polymerase omega subunit [Streptomyces roseosporus NRRL
15998]
gi|326780513|ref|ZP_08239778.1| DNA-directed RNA polymerase subunit omega [Streptomyces cf.
griseus XylebKG-1]
gi|226703180|sp|B1W468|RPOZ_STRGG RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|178468365|dbj|BAG22885.1| putative RNA polymerase omega subunit [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|282558984|gb|EFB64539.1| DNA-directed RNA polymerase, omega subunit [Streptomyces sp.
ACTE]
gi|291346296|gb|EFE73200.1| RNA polymerase omega subunit [Streptomyces roseosporus NRRL
15998]
gi|320011933|gb|ADW06783.1| DNA-directed RNA polymerase, omega subunit [Streptomyces
flavogriseus ATCC 33331]
gi|326660846|gb|EGE45692.1| DNA-directed RNA polymerase subunit omega [Streptomyces cf.
griseus XylebKG-1]
Length = 90
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
+++ ++ D+++ LV+ A+ R R ++ P VD + + +ALREI
Sbjct: 16 IDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVDTHVHEKPLSIALREI 75
Query: 54 ASGTLSPDDLE 64
+G L+ + +E
Sbjct: 76 NAGLLTSEAIE 86
>gi|251783090|ref|YP_002997393.1| DNA-directed RNA polymerase subunit omega [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|242391720|dbj|BAH82179.1| DNA-directed RNA polymerase omega subunit [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|323127840|gb|ADX25137.1| DNA-directed RNA polymerase subunit omega [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
Length = 105
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA PT K+T+ AL EI SG +
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILQAKRAHELEAGATPTQGFKSVKSTLQALEEIESGNVVI 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|239932437|ref|ZP_04689390.1| DNA-directed RNA polymerase subunit omega [Streptomyces
ghanaensis ATCC 14672]
gi|291440803|ref|ZP_06580193.1| DNA-directed RNA polymerase omega chain protein [Streptomyces
ghanaensis ATCC 14672]
gi|302561745|ref|ZP_07314087.1| DNA-directed RNA polymerase, omega subunit [Streptomyces
griseoflavus Tu4000]
gi|291343698|gb|EFE70654.1| DNA-directed RNA polymerase omega chain protein [Streptomyces
ghanaensis ATCC 14672]
gi|302479363|gb|EFL42456.1| DNA-directed RNA polymerase, omega subunit [Streptomyces
griseoflavus Tu4000]
Length = 90
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
+++ ++ D+++ LV+ A+ R R ++ P VD + + +ALREI
Sbjct: 16 IDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVDTHVHEKPLSIALREI 75
Query: 54 ASGTLSPDDLE 64
+G L+ + +E
Sbjct: 76 NAGLLTSEAVE 86
>gi|239978393|ref|ZP_04700917.1| DNA-directed RNA polymerase subunit omega [Streptomyces albus
J1074]
gi|291450289|ref|ZP_06589679.1| RNA polymerase omega subunit [Streptomyces albus J1074]
gi|291353238|gb|EFE80140.1| RNA polymerase omega subunit [Streptomyces albus J1074]
Length = 90
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
+++ ++ D+++ LV+ A+ R R ++ P VD + + +ALREI
Sbjct: 16 IDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVDTHVHEKPLSIALREI 75
Query: 54 ASGTLSPDDLE 64
+G L+ + +E
Sbjct: 76 NAGLLTSEAVE 86
>gi|302541083|ref|ZP_07293425.1| DNA-directed RNA polymerase, omega subunit [Streptomyces
hygroscopicus ATCC 53653]
gi|307326804|ref|ZP_07605996.1| DNA-directed RNA polymerase, omega subunit [Streptomyces
violaceusniger Tu 4113]
gi|302458701|gb|EFL21794.1| DNA-directed RNA polymerase, omega subunit [Streptomyces
himastatinicus ATCC 53653]
gi|306887567|gb|EFN18561.1| DNA-directed RNA polymerase, omega subunit [Streptomyces
violaceusniger Tu 4113]
Length = 90
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
+++ ++ D+++ LV+ A+ R R ++ P VD + + +ALREI
Sbjct: 16 IDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVDTHVHEKPLSIALREI 75
Query: 54 ASGTLSPDDLE 64
+G L+ + +E
Sbjct: 76 NAGLLTSEAIE 86
>gi|158313550|ref|YP_001506058.1| DNA-directed RNA polymerase subunit omega [Frankia sp. EAN1pec]
gi|226703136|sp|A8LE17|RPOZ_FRASN RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|158108955|gb|ABW11152.1| DNA-directed RNA polymerase, omega subunit [Frankia sp. EAN1pec]
Length = 94
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGK--DKNTVVALRE 52
+++ ++ D+++ LV+ A+ R R ++ P V+ +K +ALRE
Sbjct: 16 IDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVETTSAQEKPLSIALRE 75
Query: 53 IASGTLSPDDLEEDF 67
I SG L+ + + +
Sbjct: 76 INSGLLTHETITDPL 90
>gi|21910910|ref|NP_665178.1| DNA-directed RNA polymerase subunit omega [Streptococcus pyogenes
MGAS315]
gi|28895400|ref|NP_801750.1| DNA-directed RNA polymerase subunit omega [Streptococcus pyogenes
SSI-1]
gi|50914732|ref|YP_060704.1| DNA-directed RNA polymerase subunit omega [Streptococcus pyogenes
MGAS10394]
gi|71904043|ref|YP_280846.1| DNA-directed RNA polymerase subunit omega [Streptococcus pyogenes
MGAS6180]
gi|71911153|ref|YP_282703.1| DNA-directed RNA polymerase subunit omega [Streptococcus pyogenes
MGAS5005]
gi|94988965|ref|YP_597066.1| DNA-directed RNA polymerase subunit omega [Streptococcus pyogenes
MGAS9429]
gi|94990965|ref|YP_599065.1| DNA-directed RNA polymerase subunit omega [Streptococcus pyogenes
MGAS10270]
gi|94992858|ref|YP_600957.1| DNA-directed RNA polymerase subunit omega [Streptococcus pyogenes
MGAS2096]
gi|94994845|ref|YP_602943.1| DNA-directed RNA polymerase subunit omega [Streptococcus pyogenes
MGAS10750]
gi|139473322|ref|YP_001128037.1| DNA-directed RNA polymerase subunit omega [Streptococcus pyogenes
str. Manfredo]
gi|209559770|ref|YP_002286242.1| DNA-directed RNA polymerase subunit omega [Streptococcus pyogenes
NZ131]
gi|306826941|ref|ZP_07460241.1| DNA-directed RNA polymerase subunit omega [Streptococcus pyogenes
ATCC 10782]
gi|118587623|sp|Q48S19|RPOZ_STRPM RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|122987091|sp|Q1JKP7|RPOZ_STRPC RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|123080187|sp|Q1JAJ5|RPOZ_STRPB RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|123080296|sp|Q1JFN8|RPOZ_STRPD RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|123257531|sp|Q1J5I7|RPOZ_STRPF RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166230368|sp|A2RD68|RPOZ_STRPG RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703186|sp|B5XMI5|RPOZ_STRPZ RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|21905116|gb|AAM79981.1| putative DNA-directed RNA polymerase omega chain [Streptococcus
pyogenes MGAS315]
gi|28810646|dbj|BAC63583.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
gi|50903806|gb|AAT87521.1| DNA-directed RNA polymerase omega chain [Streptococcus pyogenes
MGAS10394]
gi|71803138|gb|AAX72491.1| DNA-directed RNA polymerase omega chain [Streptococcus pyogenes
MGAS6180]
gi|71853935|gb|AAZ51958.1| DNA-directed RNA polymerase omega chain [Streptococcus pyogenes
MGAS5005]
gi|94542473|gb|ABF32522.1| DNA-directed RNA polymerase omega chain [Streptococcus pyogenes
MGAS9429]
gi|94544473|gb|ABF34521.1| DNA-directed RNA polymerase omega chain [Streptococcus pyogenes
MGAS10270]
gi|94546366|gb|ABF36413.1| DNA-directed RNA polymerase omega chain [Streptococcus pyogenes
MGAS2096]
gi|94548353|gb|ABF38399.1| DNA-directed RNA polymerase omega chain [Streptococcus pyogenes
MGAS10750]
gi|134271568|emb|CAM29793.1| DNA-directed RNA polymerase omega chain [Streptococcus pyogenes
str. Manfredo]
gi|209540971|gb|ACI61547.1| DNA-directed RNA polymerase omega subunit [Streptococcus pyogenes
NZ131]
gi|304430959|gb|EFM33968.1| DNA-directed RNA polymerase subunit omega [Streptococcus pyogenes
ATCC 10782]
Length = 105
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA PT + K+T+ AL EI SG +
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILQAKRAHELEAGATPTQEFKSVKSTLQALEEIESGNVVI 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|15675506|ref|NP_269680.1| DNA-directed RNA polymerase subunit omega [Streptococcus pyogenes
M1 GAS]
gi|19746555|ref|NP_607691.1| DNA-directed RNA polymerase subunit omega [Streptococcus pyogenes
MGAS8232]
gi|56749461|sp|Q5XAP2|RPOZ_STRP6 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|56754072|sp|P68840|RPOZ_STRP1 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|56754075|sp|P68841|RPOZ_STRP3 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|56754076|sp|P68842|RPOZ_STRP8 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|13622703|gb|AAK34401.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|19748767|gb|AAL98190.1| putative DNA-directed RNA polymerase omega chain [Streptococcus
pyogenes MGAS8232]
Length = 104
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA PT + K+T+ AL EI SG +
Sbjct: 1 MLKPSIDTLLDKVPSKYSLVILQAKRAHELEAGATPTQEFKSVKSTLQALEEIESGNVVI 60
Query: 61 D 61
Sbjct: 61 H 61
>gi|254391351|ref|ZP_05006555.1| DNA-directed RNA polymerase subunit omega [Streptomyces
clavuligerus ATCC 27064]
gi|294811541|ref|ZP_06770184.1| DNA-directed RNA polymerase subunit omega [Streptomyces
clavuligerus ATCC 27064]
gi|326440073|ref|ZP_08214807.1| DNA-directed RNA polymerase subunit omega [Streptomyces
clavuligerus ATCC 27064]
gi|197705042|gb|EDY50854.1| DNA-directed RNA polymerase subunit omega [Streptomyces
clavuligerus ATCC 27064]
gi|294324140|gb|EFG05783.1| DNA-directed RNA polymerase subunit omega [Streptomyces
clavuligerus ATCC 27064]
Length = 90
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
+++ ++ D+++ LV+ A+ R R ++ P VD + + +ALREI
Sbjct: 16 IDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVDTHVHEKPLSIALREI 75
Query: 54 ASGTLSPDDLE 64
+G L+ + ++
Sbjct: 76 NAGLLTSEAID 86
>gi|297195540|ref|ZP_06912938.1| RNA polymerase omega subunit [Streptomyces pristinaespiralis ATCC
25486]
gi|32171666|sp|Q8GAU3|RPOZ_STRKA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|25005457|dbj|BAC23145.1| RNA polymerase omega subunit [Streptomyces kasugaensis]
gi|197721362|gb|EDY65270.1| RNA polymerase omega subunit [Streptomyces pristinaespiralis ATCC
25486]
gi|328881126|emb|CCA54365.1| DNA-directed RNA polymerase omega subunit [Streptomyces
venezuelae ATCC 10712]
Length = 90
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
+++ ++ D+++ LV+ A+ R R ++ P VD + + +ALREI
Sbjct: 16 IDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVDTHVHEKPLSIALREI 75
Query: 54 ASGTLSPDDLE 64
+G L+ + +E
Sbjct: 76 NAGLLTSEAIE 86
>gi|257066454|ref|YP_003152710.1| DNA-directed RNA polymerase, omega subunit [Anaerococcus prevotii
DSM 20548]
gi|256798334|gb|ACV28989.1| DNA-directed RNA polymerase, omega subunit [Anaerococcus prevotii
DSM 20548]
Length = 62
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 24/51 (47%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPD 61
+ +R+ + ++ + R R + G+ P + + K AL E+ G +S
Sbjct: 11 EISPSRYEICMMCAKRARRIVNGSAPLTEKVEAKPVTQALNEVIEGKVSKK 61
>gi|294628325|ref|ZP_06706885.1| DNA-directed RNA polymerase, omega subunit [Streptomyces sp. e14]
gi|292831658|gb|EFF90007.1| DNA-directed RNA polymerase, omega subunit [Streptomyces sp. e14]
Length = 90
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
+++ ++ D+++ LV+ A+ R R ++ P VD + + +ALREI
Sbjct: 16 IDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVDTHVHEKPLSIALREI 75
Query: 54 ASGTLSPDDLE 64
+G L+ + +E
Sbjct: 76 NAGLLTSEAIE 86
>gi|257466716|ref|ZP_05631027.1| DNA-directed RNA polymerase omega chain [Fusobacterium
gonidiaformans ATCC 25563]
gi|315917868|ref|ZP_07914108.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563]
gi|313691743|gb|EFS28578.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563]
Length = 66
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 4 TTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLSPDD 62
T ++ ++K+ N+++L ++ R R L GA P KD N REI G + ++
Sbjct: 5 ITYDELLEKIPNKYILTIVGGERARELHAGATPLTKTAKKDTNLKKVFREIIDGKIHYEE 64
>gi|29833414|ref|NP_828048.1| DNA-directed RNA polymerase subunit omega [Streptomyces
avermitilis MA-4680]
gi|41688663|sp|Q827Q2|RPOZ_STRAW RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|29610537|dbj|BAC74583.1| RNA polymerase omega subunit [Streptomyces avermitilis MA-4680]
Length = 90
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
+++ ++ D+++ LV+ A+ R R ++ P VD + + +ALREI
Sbjct: 16 IDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVDTHVHEKPLSIALREI 75
Query: 54 ASGTLSPDDLE 64
+G L+ + +E
Sbjct: 76 NAGLLTSEPVE 86
>gi|21219979|ref|NP_625758.1| DNA-directed RNA polymerase subunit omega [Streptomyces
coelicolor A3(2)]
gi|256788922|ref|ZP_05527353.1| DNA-directed RNA polymerase subunit omega [Streptomyces lividans
TK24]
gi|289772809|ref|ZP_06532187.1| DNA-directed RNA polymerase, omega subunit [Streptomyces lividans
TK24]
gi|13959489|sp|Q9KXS1|RPOZ_STRCO RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|8249937|emb|CAB93358.1| putative DNA-directed RNA polymerase omega chain [Streptomyces
coelicolor A3(2)]
gi|289703008|gb|EFD70437.1| DNA-directed RNA polymerase, omega subunit [Streptomyces lividans
TK24]
Length = 90
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
+++ ++ D+++ LV+ A+ R R ++ P VD + + +ALREI
Sbjct: 16 IDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVDTHVHEKPLSIALREI 75
Query: 54 ASGTLSPDDLE 64
+G L+ + +E
Sbjct: 76 NAGLLTSEAIE 86
>gi|294791786|ref|ZP_06756934.1| DNA-directed RNA polymerase, omega subunit [Veillonella sp.
6_1_27]
gi|294793647|ref|ZP_06758784.1| DNA-directed RNA polymerase, omega subunit [Veillonella sp.
3_1_44]
gi|294455217|gb|EFG23589.1| DNA-directed RNA polymerase, omega subunit [Veillonella sp.
3_1_44]
gi|294457016|gb|EFG25378.1| DNA-directed RNA polymerase, omega subunit [Veillonella sp.
6_1_27]
Length = 70
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 12 KVDNRFLLVLLASHRTRHLSQGAKPTVDVGK--DKNTVVALREIASGTLSPDDLEE 65
+VD+++ LV LA+ R R L+ G + DK +A EIA G ++ +E
Sbjct: 12 QVDSKYTLVTLAAKRARELTDGEPCLAESTHATDKPVSLAFYEIAEGEVTYKRTKE 67
>gi|269797903|ref|YP_003311803.1| DNA-directed RNA polymerase subunit omega [Veillonella parvula
DSM 2008]
gi|282850132|ref|ZP_06259511.1| DNA-directed RNA polymerase, omega subunit [Veillonella parvula
ATCC 17745]
gi|269094532|gb|ACZ24523.1| DNA-directed RNA polymerase, omega subunit [Veillonella parvula
DSM 2008]
gi|282579625|gb|EFB85029.1| DNA-directed RNA polymerase, omega subunit [Veillonella parvula
ATCC 17745]
Length = 71
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 12 KVDNRFLLVLLASHRTRHLSQGAKPTVDVGK--DKNTVVALREIASGTLSPDDLEE 65
+VD+++ LV LA+ R R L+ G + DK +A EIA G ++ +E
Sbjct: 13 QVDSKYTLVTLAAKRARELTDGEPCLAESTHATDKPVSLAFYEIAEGEVTYKRTKE 68
>gi|154508785|ref|ZP_02044427.1| hypothetical protein ACTODO_01294 [Actinomyces odontolyticus ATCC
17982]
gi|293192817|ref|ZP_06609712.1| DNA-directed RNA polymerase, omega subunit [Actinomyces
odontolyticus F0309]
gi|153798419|gb|EDN80839.1| hypothetical protein ACTODO_01294 [Actinomyces odontolyticus ATCC
17982]
gi|292820064|gb|EFF79062.1| DNA-directed RNA polymerase, omega subunit [Actinomyces
odontolyticus F0309]
Length = 88
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 12/68 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQG-----------AKPTVDVGKDKNTV-VALREI 53
++D ++ VD+++ LV+ A+ R R ++ P VDV D+ + V+LREI
Sbjct: 16 IDDLLEHVDSKYALVIFAAKRARQINSYNLQLQQNMIQFVGPVVDVQPDEKPLAVSLREI 75
Query: 54 ASGTLSPD 61
G LS +
Sbjct: 76 NEGLLSLE 83
>gi|299143968|ref|ZP_07037048.1| DNA-directed RNA polymerase subunit omega [Peptoniphilus sp. oral
taxon 386 str. F0131]
gi|298518453|gb|EFI42192.1| DNA-directed RNA polymerase subunit omega [Peptoniphilus sp. oral
taxon 386 str. F0131]
Length = 124
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 17/107 (15%)
Query: 14 DNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP----------DDL 63
D+R+ LV+L S R R + G+ P V+ +K +A+ EI ++ +
Sbjct: 17 DSRYSLVVLVSKRARKIVDGSAPLVNTENEKPVSIAIEEIMDKSILFGEPMSDRAYNKKI 76
Query: 64 EEDFIHSL------QKHVEIDEPDSPTENSDFSWHKPEALSFGQMSE 104
E++ +H L + DE + ++ D + E MSE
Sbjct: 77 EDEKVHKLEILKNSRMKKMKDEYEENSKIEDEINDE-EVNFKESMSE 122
>gi|313124095|ref|YP_004034354.1| DNA-directed RNA polymerase subunit omega [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
gi|312280658|gb|ADQ61377.1| DNA-directed RNA polymerase subunit omega [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
gi|325685889|gb|EGD27955.1| DNA-directed RNA polymerase subunit omega [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
Length = 73
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 3 RTT---VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-PTVDVGKDKNTVVALREIASGTL 58
R T ++ +D+VD+R+ L +LA+ R L G + K AL EIA+G +
Sbjct: 2 RITYPSIDKLLDEVDSRYSLSVLAAKRAGELEAGKPGALDNYHNLKPVGQALEEIAAGKV 61
Query: 59 SPD 61
+ D
Sbjct: 62 TID 64
>gi|315604180|ref|ZP_07879246.1| DNA-directed RNA polymerase subunit omega [Actinomyces sp. oral
taxon 180 str. F0310]
gi|315313886|gb|EFU61937.1| DNA-directed RNA polymerase subunit omega [Actinomyces sp. oral
taxon 180 str. F0310]
Length = 88
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 12/68 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQG-----------AKPTVDVGKDKNTV-VALREI 53
++D ++ VD+++ LV+ A+ R R ++ P VDV D+ + V+LREI
Sbjct: 16 IDDLLEHVDSKYALVIFAAKRARQINSYNLQLQQNMIQFVGPVVDVQPDEKPLAVSLREI 75
Query: 54 ASGTLSPD 61
G LS +
Sbjct: 76 NEGMLSLE 83
>gi|284032235|ref|YP_003382166.1| DNA-directed RNA polymerase subunit omega [Kribbella flavida DSM
17836]
gi|283811528|gb|ADB33367.1| DNA-directed RNA polymerase, omega subunit [Kribbella flavida DSM
17836]
Length = 104
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
++D + D+++ LVL ++ R R ++ P V+ + + +A+REI
Sbjct: 16 IDDLLTHTDSKYKLVLYSAKRARQINAYYSQLGEGLLEYVGPLVETHVQEKPLSIAMREI 75
Query: 54 ASGTLSPDDLE 64
G L+ D++
Sbjct: 76 NDGVLTCTDID 86
>gi|329938925|ref|ZP_08288299.1| DNA-directed RNA polymerase subunit omega [Streptomyces
griseoaurantiacus M045]
gi|329301810|gb|EGG45703.1| DNA-directed RNA polymerase subunit omega [Streptomyces
griseoaurantiacus M045]
Length = 90
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
+++ ++ D+++ LV+ A+ R R ++ P VD + + +ALREI
Sbjct: 16 IDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVDTHVHEKPLSIALREI 75
Query: 54 ASGTLSPDDLE 64
+G L+ + +E
Sbjct: 76 NAGLLTSEAVE 86
>gi|311894805|dbj|BAJ27213.1| putative DNA-directed RNA polymerase subunit omega [Kitasatospora
setae KM-6054]
Length = 84
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
+++ ++ D+++ LV+ A+ R R ++ P VD + + +ALREI
Sbjct: 12 IDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVDTHVHEKPLSIALREI 71
Query: 54 ASGTLSPDDLE 64
+G L+ + +E
Sbjct: 72 NAGLLTAEAVE 82
>gi|262282213|ref|ZP_06059982.1| DNA-directed RNA polymerase subunit omega [Streptococcus sp.
2_1_36FAA]
gi|262262667|gb|EEY81364.1| DNA-directed RNA polymerase subunit omega [Streptococcus sp.
2_1_36FAA]
Length = 104
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA PT D K+T+ AL EI SG ++
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILEAKRAHELEAGATPTQDFKSVKSTLRALEEIESGNVTI 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|157150001|ref|YP_001449911.1| DNA-directed RNA polymerase subunit omega [Streptococcus gordonii
str. Challis substr. CH1]
gi|157074795|gb|ABV09478.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
gordonii str. Challis substr. CH1]
Length = 103
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA PT D K+T+ AL EI SG ++
Sbjct: 1 MLKPSIDTLLDKVPSKYSLVILEAKRAHELEAGATPTQDFKSVKSTLRALEEIESGNVTI 60
Query: 61 D 61
Sbjct: 61 H 61
>gi|290961860|ref|YP_003493042.1| DNA-directed RNA polymerase omega chain [Streptomyces scabiei
87.22]
gi|260651386|emb|CBG74508.1| putative DNA-directed RNA polymerase omega chain [Streptomyces
scabiei 87.22]
Length = 89
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
+++ ++ D+++ LV+ A+ R R ++ P VD + + +ALREI
Sbjct: 16 IDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVDTHVHEKPLSIALREI 75
Query: 54 ASGTLSPDDLE 64
+G L+ + +E
Sbjct: 76 NAGLLTSEAVE 86
>gi|297155765|gb|ADI05477.1| DNA-directed RNA polymerase subunit omega [Streptomyces
bingchenggensis BCW-1]
Length = 90
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
+++ ++ D+++ LV+ A+ R R ++ P VD + + +ALREI
Sbjct: 16 IDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVDTHVHEKPLSIALREI 75
Query: 54 ASGTLSPDDLE 64
+G L+ + +E
Sbjct: 76 NAGLLTSEAIE 86
>gi|312195552|ref|YP_004015613.1| DNA-directed RNA polymerase, subunit omega [Frankia sp. EuI1c]
gi|311226888|gb|ADP79743.1| DNA-directed RNA polymerase, omega subunit [Frankia sp. EuI1c]
Length = 94
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGK--DKNTVVALRE 52
+++ ++ D+++ LV+ A+ R R ++ P V+ +K +ALRE
Sbjct: 16 IDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVEPTSAQEKPLSIALRE 75
Query: 53 IASGTLSPDDLEEDF 67
I +G L+ + E
Sbjct: 76 INAGLLTHEAAPESL 90
>gi|329116045|ref|ZP_08244762.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
parauberis NCFD 2020]
gi|326906450|gb|EGE53364.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
parauberis NCFD 2020]
Length = 105
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA PT K+T+ AL EI SG +
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILQAKRAHELEAGANPTQGFKSVKSTLQALEEIESGNVVI 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|256851321|ref|ZP_05556710.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
jensenii 27-2-CHN]
gi|260660745|ref|ZP_05861660.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
jensenii 115-3-CHN]
gi|282933234|ref|ZP_06338621.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
jensenii 208-1]
gi|297206191|ref|ZP_06923586.1| DNA-directed RNA polymerase subunit omega [Lactobacillus jensenii
JV-V16]
gi|256616383|gb|EEU21571.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
jensenii 27-2-CHN]
gi|260548467|gb|EEX24442.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
jensenii 115-3-CHN]
gi|281302738|gb|EFA94953.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
jensenii 208-1]
gi|297149317|gb|EFH29615.1| DNA-directed RNA polymerase subunit omega [Lactobacillus jensenii
JV-V16]
Length = 72
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLSPD 61
++ +D+VD+R+ L +LAS R L G +D K+ AL EIA+G + D
Sbjct: 8 IDKLLDRVDSRYSLSVLASKRAHELEAGNPAALDKFKSSKSVGQALEEIAAGKVIID 64
>gi|297198316|ref|ZP_06915713.1| DNA-directed RNA polymerase, omega subunit [Streptomyces sviceus
ATCC 29083]
gi|302550119|ref|ZP_07302461.1| DNA-directed RNA polymerase, omega subunit [Streptomyces
viridochromogenes DSM 40736]
gi|197714367|gb|EDY58401.1| DNA-directed RNA polymerase, omega subunit [Streptomyces sviceus
ATCC 29083]
gi|302467737|gb|EFL30830.1| DNA-directed RNA polymerase, omega subunit [Streptomyces
viridochromogenes DSM 40736]
Length = 90
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
+++ ++ D+++ LV+ A+ R R ++ P VD + + +ALREI
Sbjct: 16 IDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVDTHVHEKPLSIALREI 75
Query: 54 ASGTLSPDDLE 64
+G L+ + +E
Sbjct: 76 NAGLLTSEAVE 86
>gi|259507339|ref|ZP_05750239.1| DNA-directed RNA polymerase subunit omega (RNAP omega subunit)
(transcriptase subunit omega) (RNA polymerase omega
subunit) [Corynebacterium efficiens YS-314]
gi|259165050|gb|EEW49604.1| DNA-directed RNA polymerase subunit omega (RNAP omega subunit)
(transcriptase subunit omega) (RNA polymerase omega
subunit) [Corynebacterium efficiens YS-314]
Length = 95
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTV-DVGKDKNTVVALREI 53
+++ +DKV +++ LV+ A+ R R ++ + P V +K +ALREI
Sbjct: 26 IDELLDKVTSKYALVIFAAKRARQINSYYQQADEGVFEFIGPLVTPQPGEKPLSIALREI 85
Query: 54 ASGTLSPDD 62
G L ++
Sbjct: 86 NVGLLDHEE 94
>gi|25028281|ref|NP_738335.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
efficiens YS-314]
gi|32171660|sp|Q8FT46|RPOZ_COREF RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|23493565|dbj|BAC18535.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 97
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTV-DVGKDKNTVVALREI 53
+++ +DKV +++ LV+ A+ R R ++ + P V +K +ALREI
Sbjct: 28 IDELLDKVTSKYALVIFAAKRARQINSYYQQADEGVFEFIGPLVTPQPGEKPLSIALREI 87
Query: 54 ASGTLSPDD 62
G L ++
Sbjct: 88 NVGLLDHEE 96
>gi|254383569|ref|ZP_04998919.1| DNA-directed RNA polymerase subunit omega [Streptomyces sp. Mg1]
gi|302533362|ref|ZP_07285704.1| DNA-directed RNA polymerase, omega subunit [Streptomyces sp. C]
gi|194342464|gb|EDX23430.1| DNA-directed RNA polymerase subunit omega [Streptomyces sp. Mg1]
gi|302442257|gb|EFL14073.1| DNA-directed RNA polymerase, omega subunit [Streptomyces sp. C]
Length = 90
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
+++ ++ D+++ LV+ A+ R R ++ P VD + + +ALREI
Sbjct: 16 IDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVDTHVHEKPLSIALREI 75
Query: 54 ASGTLSPDDLE 64
+G L+ + +E
Sbjct: 76 NAGLLTSEAIE 86
>gi|238019383|ref|ZP_04599809.1| hypothetical protein VEIDISOL_01247 [Veillonella dispar ATCC
17748]
gi|237864082|gb|EEP65372.1| hypothetical protein VEIDISOL_01247 [Veillonella dispar ATCC
17748]
Length = 71
Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 12 KVDNRFLLVLLASHRTRHLSQGAKPTVDVGK--DKNTVVALREIASGTLSPDDLEE 65
+VD+++ LV LA+ R R L+ G + + DK +A EIA G ++ +E
Sbjct: 13 QVDSKYTLVTLAAKRARELTDGEQCLAESTHATDKPVSLAFYEIAEGEVTYKRTKE 68
>gi|257462561|ref|ZP_05626972.1| hypothetical protein FuD12_01835 [Fusobacterium sp. D12]
gi|317060214|ref|ZP_07924699.1| predicted protein [Fusobacterium sp. D12]
gi|313685890|gb|EFS22725.1| predicted protein [Fusobacterium sp. D12]
Length = 66
Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 4 TTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSPD 61
T ++ ++K+ N+++L ++ R R L GA P KD + REI G + +
Sbjct: 5 ITYDELLEKIPNKYILTIVGGERARELHAGATPLTKTSKKDTDLKKVFREIIDGKIHYE 63
>gi|307244465|ref|ZP_07526574.1| DNA-directed RNA polymerase, omega subunit [Peptostreptococcus
stomatis DSM 17678]
gi|306492158|gb|EFM64202.1| DNA-directed RNA polymerase, omega subunit [Peptostreptococcus
stomatis DSM 17678]
Length = 88
Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLSPDDLEED 66
D ++K+DNR+ L+ S R R L +P +D+ K K V+A E+ +G + L +D
Sbjct: 8 DIVEKIDNRYYLIATVSKRARELVNKEEPLIDIDDKAKPVVIASEEVIAGKVGYRLLTDD 67
Query: 67 FIHSLQKHVEIDEPDSPTENS 87
I + + ++ + E
Sbjct: 68 EIEAKELAHKLAQEKKLLEQD 88
>gi|23822073|sp|Q8NQ43|RPOZ_CORGL RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|21324374|dbj|BAB98998.1| DNA-directed RNA polymerase subunit K/omega [Corynebacterium
glutamicum ATCC 13032]
Length = 97
Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQ-------GA----KPTV-DVGKDKNTVVALREI 53
+++ +DKV +++ LV+ A+ R R ++ G P V +K +ALREI
Sbjct: 28 IDELLDKVTSKYALVIFAAKRARQINSFYHQADEGVFEFIGPLVTPQPGEKPLSIALREI 87
Query: 54 ASGTLSPDD 62
+G L ++
Sbjct: 88 NAGLLDHEE 96
>gi|206602753|gb|EDZ39234.1| Putative DNA-directed RNA polymerase, omega subunit
[Leptospirillum sp. Group II '5-way CG']
Length = 134
Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 35/75 (46%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEEDFIHS 70
D +D+R+ LV+ A+ R R L +GA V+ K T AL+EI + EE
Sbjct: 14 DIIDSRYRLVITAAKRARQLMEGAPVRVEKRYLKETTTALQEIVEKKIPIITGEEAVRIE 73
Query: 71 LQKHVEIDEPDSPTE 85
++ ++ + E
Sbjct: 74 ARRREKLRDRARSEE 88
>gi|19552817|ref|NP_600819.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
glutamicum ATCC 13032]
gi|62390488|ref|YP_225890.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
glutamicum ATCC 13032]
gi|145295727|ref|YP_001138548.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
glutamicum R]
gi|41325825|emb|CAF21614.1| DNA-directed RNA polymerase subunit K/omega [Corynebacterium
glutamicum ATCC 13032]
gi|140845647|dbj|BAF54646.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 95
Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQ-------GA----KPTV-DVGKDKNTVVALREI 53
+++ +DKV +++ LV+ A+ R R ++ G P V +K +ALREI
Sbjct: 26 IDELLDKVTSKYALVIFAAKRARQINSFYHQADEGVFEFIGPLVTPQPGEKPLSIALREI 85
Query: 54 ASGTLSPDD 62
+G L ++
Sbjct: 86 NAGLLDHEE 94
>gi|295839954|ref|ZP_06826887.1| DNA-directed RNA polymerase, omega subunit [Streptomyces sp.
SPB74]
gi|302517951|ref|ZP_07270293.1| DNA-directed RNA polymerase, omega subunit [Streptomyces sp.
SPB78]
gi|318057061|ref|ZP_07975784.1| DNA-directed RNA polymerase subunit omega [Streptomyces sp.
SA3_actG]
gi|318080118|ref|ZP_07987450.1| DNA-directed RNA polymerase subunit omega [Streptomyces sp.
SA3_actF]
gi|197696789|gb|EDY43722.1| DNA-directed RNA polymerase, omega subunit [Streptomyces sp.
SPB74]
gi|302426846|gb|EFK98661.1| DNA-directed RNA polymerase, omega subunit [Streptomyces sp.
SPB78]
Length = 90
Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 12/72 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
+++ ++ D+++ LV+ A+ R R ++ P VD + + +ALREI
Sbjct: 16 IDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVDTHVHEKPLSIALREI 75
Query: 54 ASGTLSPDDLEE 65
+G L+ + E
Sbjct: 76 NAGLLTSEATEN 87
>gi|319939674|ref|ZP_08014033.1| DNA-directed RNA polymerase subunit omega [Streptococcus
anginosus 1_2_62CV]
gi|319811263|gb|EFW07569.1| DNA-directed RNA polymerase subunit omega [Streptococcus
anginosus 1_2_62CV]
Length = 104
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L +GA PT + K+T+ AL EI SG +
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILEAKRAHELEEGAAPTQEFKSVKSTLCALEEIESGNVGI 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|154148131|ref|YP_001406833.1| DNA-directed RNA polymerase, omega subunit [Campylobacter hominis
ATCC BAA-381]
gi|153804140|gb|ABS51147.1| DNA-directed RNA polymerase, omega subunit [Campylobacter hominis
ATCC BAA-381]
Length = 74
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 1 MART--TVEDCIDKVD-NRFLLVLLASHRTRHLSQGAKPT--VDVGKDKNTVVALREIAS 55
M R + +++V+ NR+ L L+ + R LS G + +D K K + +ALREIA
Sbjct: 1 MPRIEEIITKALERVNGNRYQLSLMVAKRAEQLSMGEENLLDIDTRKMKFSDIALREIAE 60
Query: 56 GTLSPDDLEE 65
G + D +E
Sbjct: 61 GKILLDGFKE 70
>gi|241894935|ref|ZP_04782231.1| DNA-directed RNA polymerase, omega subunit [Weissella
paramesenteroides ATCC 33313]
gi|241871653|gb|EER75404.1| DNA-directed RNA polymerase, omega subunit [Weissella
paramesenteroides ATCC 33313]
Length = 67
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLSPDD 62
V+ ++KVD+R+ L+ L + R L QG PT+ K A EI +G + DD
Sbjct: 7 VDKLLEKVDSRYKLIALGAKRAHELEQGELPTLSKFDSVKPIGQAFEEIEAGNVVIDD 64
>gi|322373359|ref|ZP_08047895.1| DNA-directed RNA polymerase omega subunit [Streptococcus sp. C150]
gi|321278401|gb|EFX55470.1| DNA-directed RNA polymerase omega subunit [Streptococcus sp. C150]
Length = 104
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L+ GA+PT + K+T+ AL EI SG ++
Sbjct: 2 MLKPSIDKLLDKVPSKYSLVILQAKRAHELAAGAEPTQEFSAVKSTLQALEEIESGNVTI 61
Query: 61 DDLEEDFIHSLQ-KHVEIDEPDSPTENSDFSWHKPEALSFGQM 102
E + K ++ E E ++
Sbjct: 62 HPDPEGKRELARLKVIQARLAAEEEERKIKEQIAKEKEEGDKI 104
>gi|222823622|ref|YP_002575196.1| DNA-directed RNA polymerase, omega chain [Campylobacter lari
RM2100]
gi|254809276|sp|B9KFW0|RPOZ_CAMLR RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|222538844|gb|ACM63945.1| DNA-directed RNA polymerase, omega chain [Campylobacter lari
RM2100]
Length = 72
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 14 DNRFLLVLLASHRTRHLSQGAKPTVDVGKD--KNTVVALREIASGTLSPDDLEED 66
D+R+ L L+ + R L+ GA+P V++ K+ K T +AL EIA + + E
Sbjct: 16 DDRYKLALVVAKRAEELANGAEPLVNLDKNKYKYTDIALHEIAEDKIVLEGFVET 70
>gi|312863063|ref|ZP_07723301.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
vestibularis F0396]
gi|322516388|ref|ZP_08069313.1| DNA-directed RNA polymerase subunit omega [Streptococcus
vestibularis ATCC 49124]
gi|311100599|gb|EFQ58804.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
vestibularis F0396]
gi|322125121|gb|EFX96514.1| DNA-directed RNA polymerase subunit omega [Streptococcus
vestibularis ATCC 49124]
Length = 104
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L+ GA+PT + K+T+ AL EI SG ++
Sbjct: 2 MLKPSIDKLLDKVPSKYSLVILQAKRAHELAAGAEPTQEFSAVKSTLQALEEIESGNVTI 61
Query: 61 DDLEEDFIHSLQ-KHVEIDEPDSPTENSDFSWHKPEALSFGQM 102
E + K ++ E E ++
Sbjct: 62 HPDPEAKRELARLKVIQARLAAEEEERKIKEQIAKEKEEGDKI 104
>gi|322388307|ref|ZP_08061911.1| DNA-directed RNA polymerase subunit omega [Streptococcus infantis
ATCC 700779]
gi|321140979|gb|EFX36480.1| DNA-directed RNA polymerase subunit omega [Streptococcus infantis
ATCC 700779]
Length = 104
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA PT + +K+T+ AL EI SG ++
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILEAKRAHELEAGATPTQEFKSEKSTLRALEEIESGNVTI 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|124514365|gb|EAY55878.1| putative DNA-directed RNA polymerase, omega subunit
[Leptospirillum rubarum]
Length = 134
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEED 66
D +D+R+ LV+ A+ R R L +GA V+ K T AL+EI + EE
Sbjct: 14 DIIDSRYRLVIAAAKRARQLMEGAPVRVEKRYLKETTTALQEIVEKKIPIITGEEA 69
>gi|330717903|ref|ZP_08312503.1| DNA-directed RNA polymerase, subunit K/omega [Leuconostoc fallax
KCTC 3537]
Length = 70
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLSPDDLE 64
V+ ++KVD+R+ L+ LA+ R R L G T +V +K+ AL EI G + D +
Sbjct: 7 VDKLLEKVDSRYKLIALAAKRARELDAGLPATEEVFESNKSVGKALEEIEEGNVIIDPVF 66
Query: 65 EDFI 68
ED +
Sbjct: 67 EDKV 70
>gi|322436206|ref|YP_004218418.1| DNA-directed RNA polymerase, omega subunit [Acidobacterium sp.
MP5ACTX9]
gi|321163933|gb|ADW69638.1| DNA-directed RNA polymerase, omega subunit [Acidobacterium sp.
MP5ACTX9]
Length = 73
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 15 NRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEEDFI 68
N++ LV A+ R R L GA P + K VA EI +G ++ L E +
Sbjct: 9 NKYSLVKGAARRARQLQSGAPPLSNSKSMKACRVAQDEIRAGFVTF-VLPERLV 61
>gi|227484998|ref|ZP_03915314.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
51172]
gi|227236995|gb|EEI87010.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
51172]
Length = 62
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 14 DNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDD 62
+R+ + ++ + R R + G+ P + K AL EI G ++
Sbjct: 14 PSRYEICMMCAKRARRIVNGSAPLTKEIEAKPVTQALNEIIQGKVTKKQ 62
>gi|323340704|ref|ZP_08080956.1| DNA-directed RNA polymerase subunit omega [Lactobacillus ruminis
ATCC 25644]
gi|323091827|gb|EFZ34447.1| DNA-directed RNA polymerase subunit omega [Lactobacillus ruminis
ATCC 25644]
Length = 71
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV---GKDKNTVVALREIASGTLSPD 61
V+ +++VD+R+ L+LLAS R L GA P ++ KN AL E+ +G L
Sbjct: 7 VDALLERVDSRYSLILLASKRAHELDAGASPMLEESEYKSVKNVGRALEEVVAGKLRIK 65
>gi|89895474|ref|YP_518961.1| hypothetical protein DSY2728 [Desulfitobacterium hafniense Y51]
gi|219669910|ref|YP_002460345.1| DNA-directed RNA polymerase subunit omega [Desulfitobacterium
hafniense DCB-2]
gi|122997238|sp|Q24TX5|RPOZ_DESHY RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|254809269|sp|B8FSC1|RPOZ_DESHD RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|89334922|dbj|BAE84517.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219540170|gb|ACL21909.1| DNA-directed RNA polymerase, omega subunit [Desulfitobacterium
hafniense DCB-2]
Length = 68
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEE 65
+ KVD+++ LVL A+ R R L + + V+ K +A EIA G + E
Sbjct: 10 LSKVDSKYTLVLAAAKRARTLMEDPEFEVNYRGSKPVSLAFDEIAKGKYHFELTRE 65
>gi|297626331|ref|YP_003688094.1| DNA-directed RNA polymerase omega chain (RNAP omega subunit)
(Transcriptase omega chain) (RNA polymerase omega
subunit) [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296922096|emb|CBL56664.1| DNA-directed RNA polymerase omega chain (RNAP omega subunit)
(Transcriptase omega chain) (RNA polymerase omega
subunit) [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
Length = 118
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
V++ ++ VD+++ LVL A+ R R ++ P V+ + + +ALREI
Sbjct: 19 VDELLEHVDSKYRLVLFAAKRARQINAYYSQLGEGLLENVGPLVETSVQEKPLSIALREI 78
Query: 54 ASGTLSPDDLE 64
SG L ++
Sbjct: 79 QSGVLEYKKID 89
>gi|154487014|ref|ZP_02028421.1| hypothetical protein BIFADO_00852 [Bifidobacterium adolescentis
L2-32]
gi|154084877|gb|EDN83922.1| hypothetical protein BIFADO_00852 [Bifidobacterium adolescentis
L2-32]
Length = 166
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQG-----------AKPTVDVGKDKNTV-VALREI 53
++D ++ D+++ L + A+ R R ++ P V+ + + +A REI
Sbjct: 89 IDDLMEHADSKYALAIFAAKRARQINSYFTQLNEGLLQNVGPLVEYQNQEKPLSIAFREI 148
Query: 54 ASGTLSPDDLEED 66
SG L + L ED
Sbjct: 149 NSGLLE-ETLGED 160
>gi|225872288|ref|YP_002753743.1| DNA-directed RNA polymerase, omega subunit [Acidobacterium
capsulatum ATCC 51196]
gi|225792196|gb|ACO32286.1| DNA-directed RNA polymerase, omega subunit [Acidobacterium
capsulatum ATCC 51196]
Length = 75
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 12 KVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
+ D+ F VL+A+ R R L QG++P + K A EI +G +
Sbjct: 6 QFDSHFRYVLVAARRARQLQQGSQPLMPGRSAKPHKQAQEEINAGLVGY 54
>gi|256394480|ref|YP_003116044.1| DNA-directed RNA polymerase subunit omega [Catenulispora
acidiphila DSM 44928]
gi|256360706|gb|ACU74203.1| DNA-directed RNA polymerase, omega subunit [Catenulispora
acidiphila DSM 44928]
Length = 93
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
+++ +D +++ LV+ A+ R R ++ P VD + + +ALREI
Sbjct: 14 IDELLDAAGSKYSLVIYAAKRARQINAYYSQLSEGLLEYVGPLVDTHVHEKPLSIALREI 73
Query: 54 ASGTLSPDDLEEDF 67
+G L+ + +E
Sbjct: 74 NAGLLTAEPIEAGA 87
>gi|325294379|ref|YP_004280893.1| DNA-directed RNA polymerase subunit omega [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325064827|gb|ADY72834.1| DNA-directed RNA polymerase subunit omega [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 68
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 1 MA-RTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVG----KDKNTVVALREIAS 55
MA R +E ++KV N + V +A+ R RHL T + + K TV+AL EI+
Sbjct: 1 MAKRIPLEPVVEKVGNYYETVHVAAKRARHLYTVDSYTFEKDEKGEEHKKTVIALMEISE 60
Query: 56 GTLSPD 61
G + P
Sbjct: 61 GKICPK 66
>gi|308235737|ref|ZP_07666474.1| DNA-directed RNA polymerase subunit omega [Gardnerella vaginalis
ATCC 14018]
Length = 94
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 13/73 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQG-----------AKPTVDVGKDKNTV-VALREI 53
++D + D+++ L L A+ R R ++ P VD + + +A REI
Sbjct: 17 IDDLMQHADSKYALALFAAKRARQINSYFTQLNEGLLQNVGPLVDYRNQEKPLSIAFREI 76
Query: 54 ASGTLSPDDLEED 66
G L ++L ED
Sbjct: 77 NKGLL-VENLGED 88
>gi|310777988|ref|YP_003966321.1| DNA-directed RNA polymerase subunit omega [Ilyobacter polytropus
DSM 2926]
gi|309747311|gb|ADO81973.1| DNA-directed RNA polymerase subunit omega [Ilyobacter polytropus
DSM 2926]
Length = 70
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 4 TTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSPDD 62
T ++ +DK+ N+++L +A R R + G++ V + KD N REI S + D
Sbjct: 5 ITYDELLDKIPNKYVLATVAGKRCREIESGSESLVKGLKKDTNVQKTFREILSDKIGYDI 64
>gi|104774281|ref|YP_619261.1| DNA-directed RNA polymerase, omega chain [Lactobacillus
delbrueckii subsp. bulgaricus ATCC 11842]
gi|116514366|ref|YP_813272.1| DNA-directed RNA polymerase, subunit K/omega [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
gi|300811701|ref|ZP_07092176.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
gi|122274902|sp|Q049N8|RPOZ_LACDB RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|123251872|sp|Q1G9H9|RPOZ_LACDA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|103423362|emb|CAI98215.1| DNA-directed RNA polymerase, omega chain [Lactobacillus
delbrueckii subsp. bulgaricus ATCC 11842]
gi|116093681|gb|ABJ58834.1| DNA-directed RNA polymerase subunit omega [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
gi|300497328|gb|EFK32375.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
gi|325126065|gb|ADY85395.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
delbrueckii subsp. bulgaricus 2038]
Length = 73
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 3 RTT---VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-PTVDVGKDKNTVVALREIASGTL 58
R T ++ +D+VD+R+ L +LA+ R L G + K AL EIA+G +
Sbjct: 2 RITYPSIDKLLDEVDSRYSLSVLAAKRAGELEAGKPGALDNYHNLKPVGQALEEIAAGKV 61
Query: 59 SPD 61
+ D
Sbjct: 62 TID 64
>gi|291546208|emb|CBL19316.1| DNA-directed RNA polymerase, omega subunit [Ruminococcus sp.
SR1/5]
Length = 116
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 14 DNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTLSP 60
++R+ LVL AS R R L GA+P V K + VA+ E+ G +
Sbjct: 27 NSRYSLVLAASKRARQLIAGAEPLVPGAAGKKPLSVAIDELYKGKVKI 74
>gi|257470028|ref|ZP_05634120.1| DNA-directed RNA polymerase omega chain [Fusobacterium ulcerans
ATCC 49185]
gi|317064253|ref|ZP_07928738.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313689929|gb|EFS26764.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 71
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 4 TTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSPDD 62
++ +DK+ N+++L +++ R R + +GA KD + A REIA G + +
Sbjct: 5 IVYDELLDKIPNKYILTIISGQRAREIGKGATLLTKCSKKDTDIKKAFREIADGKIGYEF 64
Query: 63 LEEDF 67
EE+
Sbjct: 65 GEEEA 69
>gi|184200974|ref|YP_001855181.1| DNA-directed RNA polymerase omega subunit [Kocuria rhizophila
DC2201]
gi|183581204|dbj|BAG29675.1| DNA-directed RNA polymerase omega subunit [Kocuria rhizophila
DC2201]
Length = 156
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
V+ +DK D+++ LV+ + R R ++ P VD +K +A REI
Sbjct: 16 VDRLLDKTDSKYGLVIFGARRARQINAYYSQLHEGLFEYVGPLVDTKLNEKPLSIAFREI 75
Query: 54 ASGTLSPDDLEED 66
G + D + +
Sbjct: 76 DEGLIEADHVADA 88
>gi|260903816|ref|ZP_05912138.1| DNA-directed RNA polymerase, omega subunit [Brevibacterium linens
BL2]
Length = 110
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 14/100 (14%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
++D + +++ LV +A+ R R ++ P V G + + +ALREI
Sbjct: 13 IDDLLAVTSSKYELVSIAAQRARQINSYYAQLQEGLLENVGPLVTPGTHEKPLSIALREI 72
Query: 54 ASGTLSPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHK 93
G + ++ E L + E +P + + + +
Sbjct: 73 NEGKIVAREVTEADFGGLSQ--EPAQPAASNDGALDFSDQ 110
>gi|57505446|ref|ZP_00371374.1| DNA-directed RNA polymerase, omega subunit [Campylobacter
upsaliensis RM3195]
gi|315638890|ref|ZP_07894062.1| DNA-directed RNA polymerase subunit omega [Campylobacter
upsaliensis JV21]
gi|57016271|gb|EAL53057.1| DNA-directed RNA polymerase, omega subunit [Campylobacter
upsaliensis RM3195]
gi|315481108|gb|EFU71740.1| DNA-directed RNA polymerase subunit omega [Campylobacter
upsaliensis JV21]
Length = 73
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 10 IDKVDN-RFLLVLLASHRTRHLSQGAKPTVDVGKD--KNTVVALREIASGTLSPDDLEED 66
++K+ N R+ L L+ + R L+ GA P V + K+ K +AL EIA ++ + E
Sbjct: 12 LEKMGNDRYRLALVVAQRAEQLANGAVPLVSLDKNKIKFADIALFEIAEDKIALEGFIES 71
>gi|257452903|ref|ZP_05618202.1| hypothetical protein F3_07539 [Fusobacterium sp. 3_1_5R]
gi|317059445|ref|ZP_07923930.1| predicted protein [Fusobacterium sp. 3_1_5R]
gi|313685121|gb|EFS21956.1| predicted protein [Fusobacterium sp. 3_1_5R]
Length = 66
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 4 TTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLSPDD 62
T ++ ++K+ N+++L ++ R R L GA P KD + REI G + ++
Sbjct: 5 ITYDELLEKIPNKYILTIVGGERARELHAGATPLTKTAKKDTDLKKVFREIIDGKIHYEE 64
>gi|227504408|ref|ZP_03934457.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
striatum ATCC 6940]
gi|227199056|gb|EEI79104.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
striatum ATCC 6940]
Length = 100
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTV-DVGKDKNTVVALREI 53
+++ +DKV +++ LV+ A+ R R ++ + P V +K +ALREI
Sbjct: 30 IDELLDKVSSKYALVIFAAKRARQINSYYQEQDEGVFEFVGPLVTPEAGEKPLSIALREI 89
Query: 54 ASGTLSPDD 62
+G L ++
Sbjct: 90 EAGLLDHEE 98
>gi|134098671|ref|YP_001104332.1| DNA-directed RNA polymerase subunit omega [Saccharopolyspora
erythraea NRRL 2338]
gi|291003643|ref|ZP_06561616.1| DNA-directed RNA polymerase subunit omega [Saccharopolyspora
erythraea NRRL 2338]
gi|166230357|sp|A4FBI2|RPOZ_SACEN RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|133911294|emb|CAM01407.1| DNA-directed RNA polymerase subunit omega [Saccharopolyspora
erythraea NRRL 2338]
Length = 97
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 12/63 (19%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
++D +++V +++ LV+ ++ R R ++ P V+ G ++K +ALREI
Sbjct: 27 IDDLLEQVSSKYALVIYSAKRARQINDYYAQLGEGLLEYVGPLVEPGPREKPLSIALREI 86
Query: 54 ASG 56
+G
Sbjct: 87 HAG 89
>gi|227499522|ref|ZP_03929629.1| conserved hypothetical protein [Anaerococcus tetradius ATCC
35098]
gi|227218401|gb|EEI83652.1| conserved hypothetical protein [Anaerococcus tetradius ATCC
35098]
Length = 62
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 10/51 (19%), Positives = 23/51 (45%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPD 61
+ +R+ + ++ + R R + G+ P D + K AL E+ ++
Sbjct: 11 EISPSRYEICMMCAKRARRIVNGSAPLTDTIEAKPVTQALHEVIEQKVTKK 61
>gi|313893373|ref|ZP_07826945.1| DNA-directed RNA polymerase, omega subunit [Veillonella sp. oral
taxon 158 str. F0412]
gi|313442014|gb|EFR60434.1| DNA-directed RNA polymerase, omega subunit [Veillonella sp. oral
taxon 158 str. F0412]
Length = 71
Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 12 KVDNRFLLVLLASHRTRHLSQGAKPTVDVGK--DKNTVVALREIASGTLSPDDLEE 65
+VD+++ LV LA+ R R L+ G + DK +A EIA G ++ +E
Sbjct: 13 QVDSKYTLVTLAAKRARELTDGEACLAESTHATDKPVSLAFYEIAEGEVTYKRTKE 68
>gi|237736036|ref|ZP_04566517.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
gi|229421850|gb|EEO36897.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
Length = 71
Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVV--ALREIASGTLSPDDLEE 65
++K+ N+++L +++ R R + +G +P + K+T V A REI +G + + E+
Sbjct: 11 LEKIPNKYILTIVSGQRARQIGKG-EPLLTKCSKKDTDVKKAFREILAGKIGYEIAED 67
>gi|332366362|gb|EGJ44113.1| DNA-directed RNA polymerase subunit omega [Streptococcus
sanguinis SK355]
Length = 104
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA T + K+T+ AL EI SG +
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILEAKRAHELEAGAPATQEFKSVKSTLCALEEIESGNVVI 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|326329768|ref|ZP_08196088.1| DNA-directed RNA polymerase, omega subunit [Nocardioidaceae
bacterium Broad-1]
gi|325952354|gb|EGD44374.1| DNA-directed RNA polymerase, omega subunit [Nocardioidaceae
bacterium Broad-1]
Length = 109
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
++D + K D+++ LVL ++ R R ++ P VD + + +ALREI
Sbjct: 16 IDDLLTKTDSKYKLVLYSAQRARQINAYYSQLGEGLLEYVGPLVDTHVQEKPLSIALREI 75
Query: 54 ASGTLSPDDLE 64
L+ +D++
Sbjct: 76 NEDLLTCEDID 86
>gi|282882099|ref|ZP_06290740.1| DNA-directed RNA polymerase, omega subunit [Peptoniphilus
lacrimalis 315-B]
gi|281298129|gb|EFA90584.1| DNA-directed RNA polymerase, omega subunit [Peptoniphilus
lacrimalis 315-B]
Length = 96
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 38/87 (43%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEEDFIH 69
++K D+R+ L +L S R+R L G K VD K VAL E+ G + D +
Sbjct: 10 MEKSDSRYELCMLVSKRSRKLVDGQKALVDTDMKKPVSVALEEVMEGKIIFGQEMSDKEY 69
Query: 70 SLQKHVEIDEPDSPTENSDFSWHKPEA 96
+ VE E + N + + E
Sbjct: 70 EEKIAVERLELEEKLRNEIKNSPQEEE 96
>gi|300813265|ref|ZP_07093624.1| DNA-directed RNA polymerase, omega subunit [Peptoniphilus sp.
oral taxon 836 str. F0141]
gi|300512626|gb|EFK39767.1| DNA-directed RNA polymerase, omega subunit [Peptoniphilus sp.
oral taxon 836 str. F0141]
Length = 96
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 37/87 (42%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEEDFIH 69
++K D+R+ L +L S R+R L G K VD K VAL E+ G + D +
Sbjct: 10 MEKSDSRYELCMLVSKRSRKLVDGQKALVDTDMKKPVSVALEEVMEGKIIFGQEMSDKEY 69
Query: 70 SLQKHVEIDEPDSPTENSDFSWHKPEA 96
+ VE E + N + E
Sbjct: 70 EEKIAVERLELEEKLRNEIKDSPQEEE 96
>gi|227503560|ref|ZP_03933609.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
accolens ATCC 49725]
gi|306836181|ref|ZP_07469165.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
accolens ATCC 49726]
gi|227075596|gb|EEI13559.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
accolens ATCC 49725]
gi|304567902|gb|EFM43483.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
accolens ATCC 49726]
Length = 100
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 12/69 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ +DKV +++ LV+ A+ R R ++ + P V+ +K +ALREI
Sbjct: 30 IDELLDKVSSKYALVIFAAKRARQINSYYQEQDEGVFEFVGPLVNPEPGEKPLSIALREI 89
Query: 54 ASGTLSPDD 62
+G L ++
Sbjct: 90 DAGLLDHEE 98
>gi|57167615|ref|ZP_00366755.1| DNA-directed RNA polymerase, omega subunit [Campylobacter coli
RM2228]
gi|305433120|ref|ZP_07402276.1| DNA-directed RNA polymerase subunit omega [Campylobacter coli
JV20]
gi|57020737|gb|EAL57401.1| DNA-directed RNA polymerase, omega subunit [Campylobacter coli
RM2228]
gi|304443821|gb|EFM36478.1| DNA-directed RNA polymerase subunit omega [Campylobacter coli
JV20]
Length = 74
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 14 DNRFLLVLLASHRTRHLSQGAKPTVDVGKD--KNTVVALREIASGTLSPDDLEED 66
D+R+ L L+ + R L+ GA P VD+ K K +AL EIA ++ + L E
Sbjct: 18 DDRYRLSLVVAKRAEQLADGAAPLVDIDKSKLKFADIALYEIAENKITLEGLVET 72
>gi|319947549|ref|ZP_08021779.1| DNA-directed RNA polymerase subunit omega [Streptococcus australis
ATCC 700641]
gi|319746237|gb|EFV98500.1| DNA-directed RNA polymerase subunit omega [Streptococcus australis
ATCC 700641]
Length = 104
Score = 47.5 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 47/101 (46%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA PT + K+T+ AL EI SG +
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILEAKRAHELESGATPTQEFQSVKSTLRALEEIESGNVVI 61
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQ 101
E ++++ +E + E + G+
Sbjct: 62 HPDPEAKREAVRRRIEAERLRKEEEERKIKEQIAKEKEDGE 102
>gi|322392346|ref|ZP_08065807.1| DNA-directed RNA polymerase subunit omega [Streptococcus peroris
ATCC 700780]
gi|321144881|gb|EFX40281.1| DNA-directed RNA polymerase subunit omega [Streptococcus peroris
ATCC 700780]
Length = 104
Score = 47.5 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA T + +K+T+ AL EI SG ++
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILEAKRAHELESGAPATQEFKSEKSTLRALEEIESGNVTI 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|322386008|ref|ZP_08059648.1| DNA-directed RNA polymerase subunit omega [Streptococcus
cristatus ATCC 51100]
gi|321269991|gb|EFX52911.1| DNA-directed RNA polymerase subunit omega [Streptococcus
cristatus ATCC 51100]
Length = 104
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GAKPT D K+T+ AL EI SG +
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILEAKRAHELEAGAKPTQDFKSVKSTLRALEEIESGNVVI 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|315924514|ref|ZP_07920735.1| DNA-directed RNA polymerase subunit omega [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315622218|gb|EFV02178.1| DNA-directed RNA polymerase subunit omega [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 115
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTL-----SPDD 62
D IDK N++ L + + R R L G P V V D VA EIA + S ++
Sbjct: 22 DLIDKAQNKYELCIATAKRARELVGGEDPLVKVIVDNPISVATEEIAEDEVRIISHSQNE 81
Query: 63 LEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEA 96
+ + + E + +D + EA
Sbjct: 82 IVGATLEGAEALFAKAEENEAPSTADLAQDDTEA 115
>gi|325068823|ref|ZP_08127496.1| DNA-directed RNA polymerase subunit omega [Actinomyces oris K20]
Length = 134
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
++D ++KVD+++ LV+ A+ R R ++ + P VD + ++ +ALREI
Sbjct: 18 IDDLLEKVDSKYGLVVEAAKRARQINTYTQQLEDNQFEFFGPLVDSEVGEKSLGIALREI 77
Query: 54 ASGTLSP 60
A L
Sbjct: 78 AEDKLEV 84
>gi|320534339|ref|ZP_08034827.1| DNA-directed RNA polymerase, omega subunit [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320133450|gb|EFW25910.1| DNA-directed RNA polymerase, omega subunit [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 134
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
++D ++KVD+++ LV+ A+ R R ++ + P VD + ++ +ALREI
Sbjct: 18 IDDLLEKVDSKYGLVVEAAKRARQINTYTQQLEDNQFEFFGPLVDSEVGEKSLGIALREI 77
Query: 54 ASGTLSP 60
A L
Sbjct: 78 AEDKLEV 84
>gi|303228547|ref|ZP_07315375.1| DNA-directed RNA polymerase, omega subunit [Veillonella atypica
ACS-134-V-Col7a]
gi|303232050|ref|ZP_07318753.1| DNA-directed RNA polymerase, omega subunit [Veillonella atypica
ACS-049-V-Sch6]
gi|302513156|gb|EFL55195.1| DNA-directed RNA polymerase, omega subunit [Veillonella atypica
ACS-049-V-Sch6]
gi|302516794|gb|EFL58708.1| DNA-directed RNA polymerase, omega subunit [Veillonella atypica
ACS-134-V-Col7a]
Length = 71
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPT-VDVGK-DKNTVVALREIASGTLSPDDLEE 65
+VD+++ LV LA+ R R L+ G + D+ DK +A EIA G ++ +E
Sbjct: 12 KRVDSKYTLVTLAAKRARELTDGEECLATDIHNTDKPVSLAFYEIAEGEVTYKRTKE 68
>gi|222153511|ref|YP_002562688.1| DNA-directed RNA polymerase subunit omega [Streptococcus uberis
0140J]
gi|254809263|sp|B9DV47|RPOZ_STRU0 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|222114324|emb|CAR43008.1| DNA-directed RNA polymerase omega chain [Streptococcus uberis
0140J]
Length = 105
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GAK T K+T+ AL EI SG +
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILQAKRAHELEAGAKATQSFKSVKSTLRALEEIESGNVVI 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|315222005|ref|ZP_07863916.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
anginosus F0211]
gi|315188971|gb|EFU22675.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
anginosus F0211]
Length = 104
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L +GA PT + K+T+ AL EI SG +
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILEAKRAHELEEGAAPTQEFKSVKSTLRALEEIESGNVGI 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|320106537|ref|YP_004182127.1| DNA-directed RNA polymerase subunit omega [Terriglobus saanensis
SP1PR4]
gi|319925058|gb|ADV82133.1| DNA-directed RNA polymerase, omega subunit [Terriglobus saanensis
SP1PR4]
Length = 69
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
+ + N++ LV A+ R R L GA P + K VA EI SG +S
Sbjct: 6 ESLQNKYSLVKGAARRARQLQSGASPLIVPRSIKACRVAQDEIRSGHVSF 55
>gi|331697306|ref|YP_004333545.1| DNA-directed RNA polymerase subunit omega [Pseudonocardia
dioxanivorans CB1190]
gi|326951995|gb|AEA25692.1| DNA-directed RNA polymerase subunit omega [Pseudonocardia
dioxanivorans CB1190]
Length = 92
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
++D + +V +++ LV+ A+ R R ++ P V+ G ++K +A+REI
Sbjct: 22 IDDLLGQVSSKYALVIYAAKRARQINDYYSQLGEGLLEYVGPLVEPGPREKPLSIAMREI 81
Query: 54 ASGTL 58
SG L
Sbjct: 82 QSGLL 86
>gi|72161467|ref|YP_289124.1| DNA-directed RNA polymerase subunit omega [Thermobifida fusca YX]
gi|118587624|sp|Q47R16|RPOZ_THEFY RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|71915199|gb|AAZ55101.1| RNA polymerase, omega subunit [Thermobifida fusca YX]
Length = 88
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ ++ VD+++ LV +A+ R R ++ P V+ ++K +ALREI
Sbjct: 16 IDELLEVVDSKYSLVTMAAKRARQINAYYAQLGEGLLEYVGPLVETQPQEKPLSIALREI 75
Query: 54 ASGTLSPDDLEED 66
G L+ + EE
Sbjct: 76 REGLLTAETQEEA 88
>gi|317124738|ref|YP_004098850.1| DNA-directed RNA polymerase subunit omega [Intrasporangium calvum
DSM 43043]
gi|315588826|gb|ADU48123.1| DNA-directed RNA polymerase subunit omega [Intrasporangium calvum
DSM 43043]
Length = 87
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
++D + D+++ LV+ A+ R R ++ P V+ + + ++LREI
Sbjct: 16 IDDLLRAADSKYALVIYAAKRARQINAYYSQLQEGLLDYVGPLVETEVHEKPLSISLREI 75
Query: 54 ASGTLSPD 61
G L+ +
Sbjct: 76 NEGLLTSE 83
>gi|311114645|ref|YP_003985866.1| DNA-directed RNA polymerase subunit omega [Gardnerella vaginalis
ATCC 14019]
gi|310946139|gb|ADP38843.1| DNA-directed RNA polymerase subunit omega [Gardnerella vaginalis
ATCC 14019]
Length = 98
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 13/73 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQG-----------AKPTVDVGKDKNTV-VALREI 53
++D + D+++ L L A+ R R ++ P VD + + +A REI
Sbjct: 21 IDDLMQHADSKYALALFAAKRARQINSYFTQLNEGLLQNVGPLVDYRNQEKPLSIAFREI 80
Query: 54 ASGTLSPDDLEED 66
G L ++L ED
Sbjct: 81 NKGLL-VENLGED 92
>gi|323359991|ref|YP_004226387.1| DNA-directed RNA polymerase, subunit K/omega [Microbacterium
testaceum StLB037]
gi|323276362|dbj|BAJ76507.1| DNA-directed RNA polymerase, subunit K/omega [Microbacterium
testaceum StLB037]
Length = 84
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 13/62 (20%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAK------------PTVDVG-KDKNTVVALREIASG 56
+DKVD+++ LV+ AS R R ++ P VD +DK +AL EI
Sbjct: 17 LDKVDSKYQLVIYASKRARQINDYYSDLHEGNLFDNVGPLVDSTVEDKPLTIALHEIHED 76
Query: 57 TL 58
L
Sbjct: 77 KL 78
>gi|297243384|ref|ZP_06927317.1| DNA-directed RNA polymerase subunit kappa/omega [Gardnerella
vaginalis AMD]
gi|296888631|gb|EFH27370.1| DNA-directed RNA polymerase subunit kappa/omega [Gardnerella
vaginalis AMD]
Length = 94
Score = 47.5 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLS-----------QGAKPTVDVGKDKNTV-VALREI 53
++D + D+++ L L A+ R R ++ Q P V+ + + +A REI
Sbjct: 17 IDDLMQHADSQYALALFAAKRARQINAYFTQLNEGLLQNVGPLVEYQNQEKPLAIAFREI 76
Query: 54 ASGTLSPDDLEED 66
+G L + L ED
Sbjct: 77 NAGLLE-ETLGED 88
>gi|325001018|ref|ZP_08122130.1| DNA-directed RNA polymerase subunit omega [Pseudonocardia sp. P1]
Length = 89
Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDV-GKDKNTVVALREI 53
++D + +V +++ LV+ A+ R R +++ P V+ ++K +A+REI
Sbjct: 19 IDDLLGQVSSKYALVIYAAKRARQINEYYSQLGEGLLEYVGPLVEPGAREKPLSIAMREI 78
Query: 54 ASGTL 58
+G L
Sbjct: 79 QAGML 83
>gi|50842671|ref|YP_055898.1| DNA-directed RNA polymerase subunit omega [Propionibacterium
acnes KPA171202]
gi|289425273|ref|ZP_06427050.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes SK187]
gi|289428563|ref|ZP_06430247.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes J165]
gi|295130750|ref|YP_003581413.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes SK137]
gi|81611676|sp|Q6A8H5|RPOZ_PROAC RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|50840273|gb|AAT82940.1| probable DNA-directed RNA polymerase omega chain
[Propionibacterium acnes KPA171202]
gi|289154251|gb|EFD02939.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes SK187]
gi|289158257|gb|EFD06476.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes J165]
gi|291375567|gb|ADD99421.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes SK137]
gi|313771995|gb|EFS37961.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL074PA1]
gi|313791973|gb|EFS40074.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL110PA1]
gi|313802077|gb|EFS43311.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL110PA2]
gi|313807688|gb|EFS46175.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL087PA2]
gi|313810195|gb|EFS47916.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL083PA1]
gi|313812777|gb|EFS50491.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL025PA1]
gi|313816194|gb|EFS53908.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL059PA1]
gi|313818725|gb|EFS56439.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL046PA2]
gi|313820495|gb|EFS58209.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL036PA1]
gi|313822699|gb|EFS60413.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL036PA2]
gi|313825367|gb|EFS63081.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL063PA1]
gi|313827663|gb|EFS65377.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL063PA2]
gi|313830526|gb|EFS68240.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL007PA1]
gi|313833562|gb|EFS71276.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL056PA1]
gi|313837740|gb|EFS75454.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL037PA2]
gi|313838898|gb|EFS76612.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL086PA1]
gi|314915276|gb|EFS79107.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL005PA4]
gi|314918174|gb|EFS82005.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL050PA1]
gi|314920250|gb|EFS84081.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL050PA3]
gi|314923549|gb|EFS87380.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL001PA1]
gi|314925037|gb|EFS88868.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL036PA3]
gi|314927378|gb|EFS91209.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL044PA1]
gi|314931773|gb|EFS95604.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL067PA1]
gi|314955575|gb|EFS99976.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL027PA1]
gi|314958070|gb|EFT02173.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL002PA1]
gi|314960359|gb|EFT04461.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL002PA2]
gi|314962629|gb|EFT06729.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL082PA1]
gi|314966595|gb|EFT10694.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL082PA2]
gi|314967506|gb|EFT11605.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL037PA1]
gi|314972678|gb|EFT16775.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL037PA3]
gi|314973526|gb|EFT17622.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL053PA1]
gi|314976206|gb|EFT20301.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL045PA1]
gi|314978633|gb|EFT22727.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL072PA2]
gi|314983772|gb|EFT27864.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL005PA1]
gi|314989763|gb|EFT33854.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL005PA3]
gi|315077845|gb|EFT49896.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL053PA2]
gi|315080470|gb|EFT52446.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL078PA1]
gi|315084141|gb|EFT56117.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL027PA2]
gi|315085484|gb|EFT57460.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL002PA3]
gi|315088459|gb|EFT60435.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL072PA1]
gi|315092883|gb|EFT64859.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL060PA1]
gi|315096073|gb|EFT68049.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL038PA1]
gi|315098702|gb|EFT70678.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL059PA2]
gi|315101529|gb|EFT73505.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL046PA1]
gi|315103595|gb|EFT75571.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL050PA2]
gi|315105756|gb|EFT77732.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL030PA1]
gi|315108676|gb|EFT80652.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL030PA2]
gi|327326353|gb|EGE68143.1| DNA-directed RNA polymerase subunit omega [Propionibacterium
acnes HL096PA2]
gi|327327418|gb|EGE69194.1| DNA-directed RNA polymerase subunit omega [Propionibacterium
acnes HL103PA1]
gi|327330424|gb|EGE72173.1| DNA-directed RNA polymerase subunit omega [Propionibacterium
acnes HL097PA1]
gi|327331772|gb|EGE73509.1| DNA-directed RNA polymerase subunit omega [Propionibacterium
acnes HL096PA3]
gi|327443549|gb|EGE90203.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL013PA2]
gi|327445753|gb|EGE92407.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL043PA2]
gi|327448264|gb|EGE94918.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL043PA1]
gi|327450614|gb|EGE97268.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL087PA3]
gi|327453308|gb|EGE99962.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL092PA1]
gi|328754032|gb|EGF67648.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL087PA1]
gi|328754760|gb|EGF68376.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL020PA1]
gi|328760685|gb|EGF74251.1| DNA-directed RNA polymerase subunit omega [Propionibacterium
acnes HL099PA1]
gi|328907463|gb|EGG27229.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium sp.
P08]
gi|332675594|gb|AEE72410.1| DNA-directed RNA polymerase subunit omega [Propionibacterium
acnes 266]
Length = 115
Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREIASGT 57
++ VD+++ LVL A+ R R ++ P V+ + + +A+REI +G
Sbjct: 18 LEHVDSKYRLVLFAAKRARQINAYYSQLAEGLLENVGPLVETTNQEKPLSIAMREIQAGV 77
Query: 58 LSPDDLE 64
+ +++
Sbjct: 78 VEAHEMD 84
>gi|282853855|ref|ZP_06263192.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes J139]
gi|282583308|gb|EFB88688.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes J139]
gi|314981520|gb|EFT25614.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL110PA3]
gi|315092184|gb|EFT64160.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL110PA4]
Length = 115
Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREIASGT 57
++ VD+++ LVL A+ R R ++ P V+ + + +A+REI +G
Sbjct: 18 LEHVDSKYRLVLFAAKRARQINAYYSQLAEGLLENVGPLVETTNQEKPLSIAMREIQAGV 77
Query: 58 LSPDDLE 64
+ +++
Sbjct: 78 VEAHEMD 84
>gi|255525656|ref|ZP_05392589.1| RNA polymerase Rpb6 [Clostridium carboxidivorans P7]
gi|255510642|gb|EET86949.1| RNA polymerase Rpb6 [Clostridium carboxidivorans P7]
Length = 47
Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 22 LASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEE 65
+ + R R L +GA+P V + K +A+ EI+ G ++ ++E
Sbjct: 1 MTAKRARQLIEGAEPMVRITSTKPVTIAINEISQGAITYTTVKE 44
>gi|326773311|ref|ZP_08232594.1| DNA-directed RNA polymerase, omega subunit [Actinomyces viscosus
C505]
gi|326636541|gb|EGE37444.1| DNA-directed RNA polymerase, omega subunit [Actinomyces viscosus
C505]
Length = 132
Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
++D ++KVD+++ LV+ A+ R R ++ + P VD + ++ +ALREI
Sbjct: 16 IDDLLEKVDSKYGLVVEAAKRARQINTYTQQLEDNQFEFFGPLVDSEVGEKSLGIALREI 75
Query: 54 ASGTLSP 60
A L
Sbjct: 76 AEDKLEV 82
>gi|332653346|ref|ZP_08419091.1| DNA-directed RNA polymerase, omega subunit [Ruminococcaceae
bacterium D16]
gi|332518492|gb|EGJ48095.1| DNA-directed RNA polymerase, omega subunit [Ruminococcaceae
bacterium D16]
Length = 67
Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLS 59
D + KV +R+ LV + + R R ++ A+ + DK +A++E+A G L
Sbjct: 9 DLLKKVPSRYQLVNVVASRAREIASEAEIAGEPLDDKPVSIAIQEVADGKLD 60
>gi|251771066|gb|EES51650.1| DNA-directed RNA polymerase, omega subunit [Leptospirillum
ferrodiazotrophum]
Length = 131
Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 3/114 (2%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEEDFIHS 70
D +D+R+ LV+ A+ RTR + +G P D K T + L EI S ++ + +
Sbjct: 14 DVIDSRYRLVIAAAKRTRQIMEGHAPVGDWPYHKETTIGLAEILSKSVPI-ITGPAAVVA 72
Query: 71 LQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNI--VTPDKRDD 122
QKH E + + A + + DL + P++ DD
Sbjct: 73 EQKHKEALRAARRQHEEALAPSRGYARESTEAIQADLSVYQEDPEHSAPEESDD 126
>gi|271964319|ref|YP_003338515.1| DNA-directed RNA polymerase subunit omega [Streptosporangium
roseum DSM 43021]
gi|270507494|gb|ACZ85772.1| DNA-directed RNA polymerase, omega subunit [Streptosporangium
roseum DSM 43021]
Length = 87
Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREIASGT 57
+D VD+++ LV+ S R R ++ P V+ ++K +ALRE++ G
Sbjct: 20 LDIVDSKYSLVIFGSKRARQINAYYSQLGEGLLEYVGPLVETHAQEKPLSIALREVSEGL 79
Query: 58 LSPDDLE 64
L+ + +E
Sbjct: 80 LTSEPIE 86
>gi|253581646|ref|ZP_04858870.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251835995|gb|EES64532.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 71
Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 4 TTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSPDD 62
++ ++K+ N+++L +++ R R + +GA KD + A REIA G + +
Sbjct: 5 IVYDELLEKIPNKYILTIISGQRAREIGKGATLLTKCSKKDTDIKKAFREIADGKIGYEF 64
Query: 63 LEED 66
EE+
Sbjct: 65 GEEE 68
>gi|255325048|ref|ZP_05366154.1| DNA-directed RNA polymerase, omega subunit [Corynebacterium
tuberculostearicum SK141]
gi|311739508|ref|ZP_07713343.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
pseudogenitalium ATCC 33035]
gi|255297613|gb|EET76924.1| DNA-directed RNA polymerase, omega subunit [Corynebacterium
tuberculostearicum SK141]
gi|311305324|gb|EFQ81392.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 100
Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTV-DVGKDKNTVVALREI 53
+++ +DKV +++ LV+ A+ R R ++ + P V +K +ALREI
Sbjct: 30 IDELLDKVSSKYALVIFAAKRARQINSYYQEQDEGVFEFVGPLVTPEPGEKPLSIALREI 89
Query: 54 ASGTLSPDD 62
+G L ++
Sbjct: 90 DAGLLDHEE 98
>gi|262182505|ref|ZP_06041926.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
aurimucosum ATCC 700975]
Length = 100
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTV-DVGKDKNTVVALREI 53
+++ + KV +++ LV+ A+ R R ++ + P V +K +ALREI
Sbjct: 30 IDELLGKVSSKYALVIFAAKRARQINSYYQEQDEGVFEFVGPLVTPEPGEKPLSIALREI 89
Query: 54 ASGTLSPDD 62
+G L ++
Sbjct: 90 DAGLLDHEE 98
>gi|329946663|ref|ZP_08294075.1| DNA-directed RNA polymerase, omega subunit [Actinomyces sp. oral
taxon 170 str. F0386]
gi|328526474|gb|EGF53487.1| DNA-directed RNA polymerase, omega subunit [Actinomyces sp. oral
taxon 170 str. F0386]
Length = 134
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
++D ++KVD+++ LV+ A+ R R ++ + P VD + ++ +ALREI
Sbjct: 18 IDDLLEKVDSKYGLVVEAAKRARQINTYTQQLEDNQFEFFGPLVDSEVGEKSLGIALREI 77
Query: 54 ASGTLSP 60
A L
Sbjct: 78 AEDKLEV 84
>gi|319790374|ref|YP_004152007.1| DNA-directed RNA polymerase, omega subunit [Thermovibrio
ammonificans HB-1]
gi|317114876|gb|ADU97366.1| DNA-directed RNA polymerase, omega subunit [Thermovibrio
ammonificans HB-1]
Length = 69
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 3 RTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK----DKNTVVALREIASGTL 58
R +E + KV N + V +A+ R RHL T K TV+AL EI G +
Sbjct: 4 RLPLEPIVKKVGNFYETVHVAAKRARHLYTVDPYTFGKDSEGREHKKTVIALLEILEGKV 63
Query: 59 SPD 61
P
Sbjct: 64 CPK 66
>gi|289178409|gb|ADC85655.1| DNA-directed RNA polymerase omega chain [Bifidobacterium animalis
subsp. lactis BB-12]
Length = 118
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 13/73 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQG-----------AKPTVDVGKDKNTV-VALREI 53
++D ++ D+++ L + A+ R R ++ P V+ + + +A REI
Sbjct: 41 IDDLMEHADSKYALAIFAAKRARQINSYFTQLNEGLLQNVGPLVEYKSQEKPLSIAFREI 100
Query: 54 ASGTLSPDDLEED 66
G L + L ED
Sbjct: 101 NEGLLE-ETLGED 112
>gi|306825764|ref|ZP_07459103.1| DNA-directed RNA polymerase subunit omega [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|306829012|ref|ZP_07462203.1| DNA-directed RNA polymerase subunit omega [Streptococcus mitis
ATCC 6249]
gi|315612650|ref|ZP_07887562.1| DNA-directed RNA polymerase subunit omega [Streptococcus
sanguinis ATCC 49296]
gi|331266907|ref|YP_004326537.1| DNA-dependent RNA Polymerase, omega subunit [Streptococcus oralis
Uo5]
gi|304428817|gb|EFM31906.1| DNA-directed RNA polymerase subunit omega [Streptococcus mitis
ATCC 6249]
gi|304432125|gb|EFM35102.1| DNA-directed RNA polymerase subunit omega [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|315315237|gb|EFU63277.1| DNA-directed RNA polymerase subunit omega [Streptococcus
sanguinis ATCC 49296]
gi|326683579|emb|CBZ01197.1| DNA-dependent RNA Polymerase, omega subunit [Streptococcus oralis
Uo5]
Length = 104
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA T + +K+T+ AL EI SG ++
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILEAKRAHELEAGAPATQEFKSEKSTLRALEEIESGNVTI 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|270293275|ref|ZP_06199486.1| DNA-directed RNA polymerase omega subunit [Streptococcus sp.
M143]
gi|293364890|ref|ZP_06611607.1| DNA-directed RNA polymerase subunit omega [Streptococcus oralis
ATCC 35037]
gi|307703143|ref|ZP_07640089.1| DNA-directed RNA polymerase, omega subunit [Streptococcus oralis
ATCC 35037]
gi|322374814|ref|ZP_08049328.1| DNA-directed RNA polymerase omega subunit [Streptococcus sp.
C300]
gi|270279254|gb|EFA25100.1| DNA-directed RNA polymerase omega subunit [Streptococcus sp.
M143]
gi|291316340|gb|EFE56776.1| DNA-directed RNA polymerase subunit omega [Streptococcus oralis
ATCC 35037]
gi|307623218|gb|EFO02209.1| DNA-directed RNA polymerase, omega subunit [Streptococcus oralis
ATCC 35037]
gi|321280314|gb|EFX57353.1| DNA-directed RNA polymerase omega subunit [Streptococcus sp.
C300]
Length = 104
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA T + +K+T+ AL EI SG ++
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILEAKRAHELEAGAPATQEFKSEKSTLRALEEIESGNVTI 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|304404139|ref|ZP_07385801.1| DNA-directed RNA polymerase, omega subunit [Paenibacillus
curdlanolyticus YK9]
gi|304347117|gb|EFM12949.1| DNA-directed RNA polymerase, omega subunit [Paenibacillus
curdlanolyticus YK9]
Length = 74
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV-DVGKDKNTVVALREIASGTLSPDDLE 64
+++ I+KVD+++ LV+ AS R R L +G+KP + + K VAL EI L + +E
Sbjct: 6 IDEMIEKVDSKYKLVVAASRRARMLREGSKPEIRNARSHKQVGVALEEIYHDMLIVESVE 65
>gi|283783374|ref|YP_003374128.1| DNA-directed RNA polymerase, omega subunit [Gardnerella vaginalis
409-05]
gi|298252683|ref|ZP_06976477.1| DNA-directed RNA polymerase subunit kappa/omega [Gardnerella
vaginalis 5-1]
gi|283441826|gb|ADB14292.1| DNA-directed RNA polymerase, omega subunit [Gardnerella vaginalis
409-05]
gi|297533047|gb|EFH71931.1| DNA-directed RNA polymerase subunit kappa/omega [Gardnerella
vaginalis 5-1]
Length = 94
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLS-----------QGAKPTVDVGKDKNTV-VALREI 53
++D + D+++ L L A+ R R ++ Q P V+ + + +A REI
Sbjct: 17 IDDLMQHADSKYALALFAAKRARQINAYFTQLNEGLLQNVGPLVEYQNQEKPLAIAFREI 76
Query: 54 ASGTLSPDDLEED 66
+G L + L ED
Sbjct: 77 NAGLLE-ETLGED 88
>gi|169831748|ref|YP_001717730.1| DNA-directed RNA polymerase subunit omega [Candidatus
Desulforudis audaxviator MP104C]
gi|169638592|gb|ACA60098.1| DNA-directed RNA polymerase, omega subunit [Candidatus
Desulforudis audaxviator MP104C]
Length = 69
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEE 65
I K D+R+ LV++A+ R R L++ + V V K AL EIA+ + L++
Sbjct: 11 IKKADSRYTLVVVAAKRARVLTEQNRQGVLVPTTKPVTQALEEIANNKVRFKVLKQ 66
>gi|302866825|ref|YP_003835462.1| DNA-directed RNA polymerase subunit omega [Micromonospora
aurantiaca ATCC 27029]
gi|315503240|ref|YP_004082127.1| DNA-directed RNA polymerase, omega subunit [Micromonospora sp.
L5]
gi|302569684|gb|ADL45886.1| DNA-directed RNA polymerase, omega subunit [Micromonospora
aurantiaca ATCC 27029]
gi|315409859|gb|ADU07976.1| DNA-directed RNA polymerase, omega subunit [Micromonospora sp.
L5]
Length = 88
Score = 47.2 bits (111), Expect = 9e-04, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 35/68 (51%), Gaps = 12/68 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVD-VGKDKNTVVALREI 53
+++ ++K +++ LV+ A+ R R ++ P V+ ++K +A+REI
Sbjct: 16 IDELLEKTTSKYALVIFAAKRARQVNAYYSQLGEGLLEYVGPLVETTPQEKPLSIAMREI 75
Query: 54 ASGTLSPD 61
+G L+ +
Sbjct: 76 NAGLLTAE 83
>gi|227488834|ref|ZP_03919150.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227542170|ref|ZP_03972219.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227091256|gb|EEI26568.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227181999|gb|EEI62971.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 106
Score = 46.8 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 12/69 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ ++KV +++ L + A+ R R ++ + P V +K +ALREI
Sbjct: 37 IDELLEKVSSKYALAIFAAKRARQINSYNQQTGDSVFEYVGPLVPPEPGEKPLSIALREI 96
Query: 54 ASGTLSPDD 62
G L ++
Sbjct: 97 NQGLLDHEE 105
>gi|227833007|ref|YP_002834714.1| DNA-directed RNA polymerase, omega subunit [Corynebacterium
aurimucosum ATCC 700975]
gi|227454023|gb|ACP32776.1| DNA-directed RNA polymerase, omega subunit [Corynebacterium
aurimucosum ATCC 700975]
Length = 97
Score = 46.8 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTV-DVGKDKNTVVALREI 53
+++ + KV +++ LV+ A+ R R ++ + P V +K +ALREI
Sbjct: 27 IDELLGKVSSKYALVIFAAKRARQINSYYQEQDEGVFEFVGPLVTPEPGEKPLSIALREI 86
Query: 54 ASGTLSPDD 62
+G L ++
Sbjct: 87 DAGLLDHEE 95
>gi|199597154|ref|ZP_03210586.1| DNA-directed RNA polymerase, subunit K/omega [Lactobacillus
rhamnosus HN001]
gi|229552475|ref|ZP_04441200.1| DNA-directed RNA polymerase [Lactobacillus rhamnosus LMS2-1]
gi|258508668|ref|YP_003171419.1| DNA-directed RNA polymerase subunit omega [Lactobacillus
rhamnosus GG]
gi|258539845|ref|YP_003174344.1| DNA-directed RNA polymerase subunit omega [Lactobacillus
rhamnosus Lc 705]
gi|199591958|gb|EDZ00033.1| DNA-directed RNA polymerase, subunit K/omega [Lactobacillus
rhamnosus HN001]
gi|229314212|gb|EEN80185.1| DNA-directed RNA polymerase [Lactobacillus rhamnosus LMS2-1]
gi|257148595|emb|CAR87568.1| DNA-directed RNA polymerase subunit omega [Lactobacillus
rhamnosus GG]
gi|257151521|emb|CAR90493.1| DNA-directed RNA polymerase subunit omega [Lactobacillus
rhamnosus Lc 705]
gi|259649974|dbj|BAI42136.1| RNA polymerase omega subunit [Lactobacillus rhamnosus GG]
Length = 80
Score = 46.8 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLSPD 61
++ ++KV +R+ L +LA+ R L G K D DK+ AL EIA+G + D
Sbjct: 7 IDKLLEKVPSRYSLAVLAAKRAHELEAGDLKMLSDYKSDKSVGKALEEIAAGDVIID 63
>gi|310828899|ref|YP_003961256.1| DNA-directed RNA polymerase [Eubacterium limosum KIST612]
gi|308740633|gb|ADO38293.1| DNA-directed RNA polymerase [Eubacterium limosum KIST612]
Length = 110
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 13/102 (12%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEE 65
+ D I K N++ LVL + R R + G +P V + D +A EIA + P
Sbjct: 19 INDLISKASNKYELVLATAKRAREIIDGDEPLVKITIDNPVSIATAEIAQDLVRP----- 73
Query: 66 DFIHSLQKHVEIDEPDSPTENSDFSWHK--PEALSFGQMSEG 105
+ E E D E++ F + EA + M+E
Sbjct: 74 ------VQPAEASEVDDVFEDAVFPEDELCSEAETTADMAED 109
>gi|257055593|ref|YP_003133425.1| DNA-directed RNA polymerase, omega subunit [Saccharomonospora
viridis DSM 43017]
gi|256585465|gb|ACU96598.1| DNA-directed RNA polymerase, omega subunit [Saccharomonospora
viridis DSM 43017]
Length = 91
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDV-GKDKNTVVALREI 53
+++ ++KV +++ LV+ A+ R R ++ P V+ ++K+ +ALREI
Sbjct: 21 IDELLEKVSSKYALVIYAAKRARQINDYYAQLGEGLLEYVGPLVEPGPREKSLSIALREI 80
Query: 54 ASGTL 58
+G L
Sbjct: 81 HAGLL 85
>gi|227554546|ref|ZP_03984593.1| DNA-directed RNA polymerase subunit omega [Enterococcus faecalis
HH22]
gi|255970682|ref|ZP_05421268.1| RNA polymerase [Enterococcus faecalis T1]
gi|255974262|ref|ZP_05424848.1| predicted protein [Enterococcus faecalis T2]
gi|256618118|ref|ZP_05474964.1| RNA polymerase [Enterococcus faecalis ATCC 4200]
gi|256761048|ref|ZP_05501628.1| predicted protein [Enterococcus faecalis T3]
gi|256854797|ref|ZP_05560161.1| DNA-directed RNA polymerase subunit omega [Enterococcus faecalis
T8]
gi|256958403|ref|ZP_05562574.1| RNA polymerase [Enterococcus faecalis DS5]
gi|256960472|ref|ZP_05564643.1| RNA polymerase [Enterococcus faecalis Merz96]
gi|256962965|ref|ZP_05567136.1| RNA polymerase [Enterococcus faecalis HIP11704]
gi|257078285|ref|ZP_05572646.1| RNA polymerase [Enterococcus faecalis JH1]
gi|257083199|ref|ZP_05577560.1| DNA-directed RNA polymerase subunit omega [Enterococcus faecalis
Fly1]
gi|257088237|ref|ZP_05582598.1| predicted protein [Enterococcus faecalis D6]
gi|257091368|ref|ZP_05585729.1| DNA-directed RNA polymerase subunit omega [Enterococcus faecalis
CH188]
gi|257417254|ref|ZP_05594248.1| RNA polymerase [Enterococcus faecalis AR01/DG]
gi|257417970|ref|ZP_05594964.1| DNA-directed RNA polymerase subunit omega [Enterococcus faecalis
T11]
gi|293385130|ref|ZP_06630956.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
R712]
gi|293389103|ref|ZP_06633575.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
S613]
gi|294779977|ref|ZP_06745357.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
PC1.1]
gi|300861494|ref|ZP_07107578.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TUSoD Ef11]
gi|307273625|ref|ZP_07554853.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX0855]
gi|307288892|ref|ZP_07568865.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX0109]
gi|307292143|ref|ZP_07572009.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX0411]
gi|312910852|ref|ZP_07769688.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
DAPTO 516]
gi|312953221|ref|ZP_07772067.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX0102]
gi|227176344|gb|EEI57316.1| DNA-directed RNA polymerase subunit omega [Enterococcus faecalis
HH22]
gi|255961700|gb|EET94176.1| RNA polymerase [Enterococcus faecalis T1]
gi|255967134|gb|EET97756.1| predicted protein [Enterococcus faecalis T2]
gi|256597645|gb|EEU16821.1| RNA polymerase [Enterococcus faecalis ATCC 4200]
gi|256682299|gb|EEU21994.1| predicted protein [Enterococcus faecalis T3]
gi|256710357|gb|EEU25401.1| DNA-directed RNA polymerase subunit omega [Enterococcus faecalis
T8]
gi|256948899|gb|EEU65531.1| RNA polymerase [Enterococcus faecalis DS5]
gi|256950968|gb|EEU67600.1| RNA polymerase [Enterococcus faecalis Merz96]
gi|256953461|gb|EEU70093.1| RNA polymerase [Enterococcus faecalis HIP11704]
gi|256986315|gb|EEU73617.1| RNA polymerase [Enterococcus faecalis JH1]
gi|256991229|gb|EEU78531.1| DNA-directed RNA polymerase subunit omega [Enterococcus faecalis
Fly1]
gi|256996267|gb|EEU83569.1| predicted protein [Enterococcus faecalis D6]
gi|257000180|gb|EEU86700.1| DNA-directed RNA polymerase subunit omega [Enterococcus faecalis
CH188]
gi|257159082|gb|EEU89042.1| RNA polymerase [Enterococcus faecalis ARO1/DG]
gi|257159798|gb|EEU89758.1| DNA-directed RNA polymerase subunit omega [Enterococcus faecalis
T11]
gi|291077607|gb|EFE14971.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
R712]
gi|291081571|gb|EFE18534.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
S613]
gi|294452958|gb|EFG21380.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
PC1.1]
gi|295114435|emb|CBL33072.1| DNA-directed RNA polymerase subunit omega [Enterococcus sp. 7L76]
gi|300848955|gb|EFK76708.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TUSoD Ef11]
gi|306496796|gb|EFM66347.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX0411]
gi|306500164|gb|EFM69508.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX0109]
gi|306509638|gb|EFM78680.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX0855]
gi|310628838|gb|EFQ12121.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX0102]
gi|311288875|gb|EFQ67431.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
DAPTO 516]
gi|315031811|gb|EFT43743.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX0017]
gi|315034827|gb|EFT46759.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX0027]
gi|315150903|gb|EFT94919.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX0012]
gi|315152790|gb|EFT96806.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX0031]
gi|315154711|gb|EFT98727.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX0043]
gi|315164418|gb|EFU08435.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX1302]
gi|315167226|gb|EFU11243.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX1341]
gi|315172965|gb|EFU16982.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX1346]
gi|315573274|gb|EFU85465.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX0309B]
gi|323479054|gb|ADX78493.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
62]
gi|327536243|gb|AEA95077.1| DNA-directed RNA polymerase subunit omega [Enterococcus faecalis
OG1RF]
gi|329576778|gb|EGG58271.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX1467]
Length = 100
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLS 59
M + +++ + +V +++ LV+LAS R L +G +PTV+ K+ AL EI +GT+
Sbjct: 2 MLKPSIDSLLKEVPSKYSLVILASKRAHELDEGVQPTVESFDSVKSVGRALEEIEAGTVI 61
Query: 60 PD 61
D
Sbjct: 62 SD 63
>gi|138894689|ref|YP_001125142.1| DNA-directed RNA polymerase subunit omega [Geobacillus
thermodenitrificans NG80-2]
gi|134266202|gb|ABO66397.1| DNA-directed RNA polymerase omega chain [Geobacillus
thermodenitrificans NG80-2]
Length = 68
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTL 58
+ KVD+++ LV + + R R L G++ V+ K V AL EIA +
Sbjct: 12 MKKVDSKYKLVTVVAKRARQLQDGSELMVNKPVSKKFVGQALEEIAGDKV 61
>gi|29377581|ref|NP_816735.1| DNA-directed RNA polymerase subunit omega [Enterococcus faecalis
V583]
gi|227517266|ref|ZP_03947315.1| DNA-directed RNA polymerase subunit omega [Enterococcus faecalis
TX0104]
gi|229547449|ref|ZP_04436174.1| DNA-directed RNA polymerase subunit omega [Enterococcus faecalis
TX1322]
gi|229548018|ref|ZP_04436743.1| DNA-directed RNA polymerase subunit omega [Enterococcus faecalis
ATCC 29200]
gi|257420427|ref|ZP_05597417.1| DNA-directed RNA polymerase subunit omega [Enterococcus faecalis
X98]
gi|307270559|ref|ZP_07551857.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX4248]
gi|307276653|ref|ZP_07557771.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX2134]
gi|307284849|ref|ZP_07565005.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX0860]
gi|312902124|ref|ZP_07761384.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX0470]
gi|312905432|ref|ZP_07764546.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX0635]
gi|312906686|ref|ZP_07765686.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
DAPTO 512]
gi|41688667|sp|Q82ZD6|RPOZ_ENTFA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|29345048|gb|AAO82805.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
V583]
gi|227075273|gb|EEI13236.1| DNA-directed RNA polymerase subunit omega [Enterococcus faecalis
TX0104]
gi|229306894|gb|EEN72890.1| DNA-directed RNA polymerase subunit omega [Enterococcus faecalis
ATCC 29200]
gi|229307481|gb|EEN73468.1| DNA-directed RNA polymerase subunit omega [Enterococcus faecalis
TX1322]
gi|257162251|gb|EEU92211.1| DNA-directed RNA polymerase subunit omega [Enterococcus faecalis
X98]
gi|306503108|gb|EFM72365.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX0860]
gi|306506763|gb|EFM75915.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX2134]
gi|306513140|gb|EFM81774.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX4248]
gi|310627334|gb|EFQ10617.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
DAPTO 512]
gi|310631161|gb|EFQ14444.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX0635]
gi|311290788|gb|EFQ69344.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX0470]
gi|315026427|gb|EFT38359.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX2137]
gi|315028351|gb|EFT40283.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX4000]
gi|315144143|gb|EFT88159.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX2141]
gi|315146580|gb|EFT90596.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX4244]
gi|315159375|gb|EFU03392.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX0312]
gi|315171196|gb|EFU15213.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX1342]
gi|315577114|gb|EFU89305.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX0630]
gi|315581152|gb|EFU93343.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX0309A]
Length = 99
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLS 59
M + +++ + +V +++ LV+LAS R L +G +PTV+ K+ AL EI +GT+
Sbjct: 1 MLKPSIDSLLKEVPSKYSLVILASKRAHELDEGVQPTVESFDSVKSVGRALEEIEAGTVI 60
Query: 60 PD 61
D
Sbjct: 61 SD 62
>gi|81428301|ref|YP_395301.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus sakei
subsp. sakei 23K]
gi|115305586|sp|Q38XT9|RPOZ_LACSS RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|78609943|emb|CAI54990.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus sakei
subsp. sakei 23K]
Length = 85
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTLSPD 61
++ ++ V++R+ L +LAS R + G + K TV +A+ EIA+G ++ D
Sbjct: 7 IDKLLENVNSRYSLAVLASKRAHQIEAGDLKMLSEYKSPKTVGMAMEEIAAGNVTID 63
>gi|297519777|ref|ZP_06938163.1| DNA-directed RNA polymerase subunit omega [Escherichia coli OP50]
Length = 70
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 22 LASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLSPDDLE 64
+A+ R R + G P V DK TV+ALREI G ++ L+
Sbjct: 1 VAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILD 44
>gi|160947096|ref|ZP_02094263.1| hypothetical protein PEPMIC_01028 [Parvimonas micra ATCC 33270]
gi|158446230|gb|EDP23225.1| hypothetical protein PEPMIC_01028 [Parvimonas micra ATCC 33270]
Length = 65
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 10 IDKVD-NRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEE 65
++K+D +R+ LV++ S R R + G+K ++ K AL+EI + ++ + E+
Sbjct: 9 LEKIDKSRYALVVMTSKRARRIVNGSKNLMETDAQKPITQALQEIVAQKVTKKEKED 65
>gi|238063922|ref|ZP_04608631.1| DNA-directed RNA polymerase, omega subunit [Micromonospora sp.
ATCC 39149]
gi|330466975|ref|YP_004404718.1| DNA-directed RNA polymerase subunit omega [Verrucosispora maris
AB-18-032]
gi|237885733|gb|EEP74561.1| DNA-directed RNA polymerase, omega subunit [Micromonospora sp.
ATCC 39149]
gi|328809946|gb|AEB44118.1| DNA-directed RNA polymerase subunit omega [Verrucosispora maris
AB-18-032]
Length = 87
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 35/68 (51%), Gaps = 12/68 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVD-VGKDKNTVVALREI 53
+++ ++K +++ LV+ A+ R R ++ P V+ ++K +A+REI
Sbjct: 15 IDELLEKTTSKYALVIFAAKRARQVNAYYSQLGEGLLEYVGPLVETTPQEKPLSIAMREI 74
Query: 54 ASGTLSPD 61
+G L+ +
Sbjct: 75 NAGLLTAE 82
>gi|119716664|ref|YP_923629.1| DNA-directed RNA polymerase, omega subunit [Nocardioides sp.
JS614]
gi|166230337|sp|A1SJF7|RPOZ_NOCSJ RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|119537325|gb|ABL81942.1| DNA-directed RNA polymerase subunit omega [Nocardioides sp.
JS614]
Length = 110
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
+++ + K D+++ LVL ++ R R ++ P VD + + +ALREI
Sbjct: 16 IDELLTKTDSKYKLVLYSAKRARQINAYYSQLGEGLLEYVGPLVDTHVQEKPLSIALREI 75
Query: 54 ASGTLSPDDLE 64
L+ +D++
Sbjct: 76 NEDLLTCEDVD 86
>gi|213692988|ref|YP_002323574.1| DNA-directed RNA polymerase, omega subunit [Bifidobacterium
longum subsp. infantis ATCC 15697]
gi|296454636|ref|YP_003661779.1| DNA-directed RNA polymerase subunit omega [Bifidobacterium longum
subsp. longum JDM301]
gi|254809279|sp|B7GUQ0|RPOZ_BIFLI RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|213524449|gb|ACJ53196.1| DNA-directed RNA polymerase, omega subunit [Bifidobacterium
longum subsp. infantis ATCC 15697]
gi|296184067|gb|ADH00949.1| DNA-directed RNA polymerase, omega subunit [Bifidobacterium
longum subsp. longum JDM301]
gi|320459168|dbj|BAJ69789.1| DNA-directed RNA polymerase omega subunit [Bifidobacterium longum
subsp. infantis ATCC 15697]
Length = 94
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 13/73 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQG-----------AKPTVDVGKDKNTV-VALREI 53
++D + D+++ L + A+ R R ++ P V+ ++ + +A REI
Sbjct: 17 IDDLMKHADSKYALAIFAAKRARQINSYFTQLNEGLLQNVGPLVEYQNNEKPLSIAFREI 76
Query: 54 ASGTLSPDDLEED 66
G L + L ED
Sbjct: 77 DEGLLE-ETLGED 88
>gi|146297090|ref|YP_001180861.1| DNA-directed RNA polymerase, omega subunit [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410666|gb|ABP67670.1| DNA-directed RNA polymerase subunit omega [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 76
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDV--GKDKNTVVALREIASGTLSPDDLE 64
+ VDN++ L +L + R R L + + VD+ DK +A+ EIASG +S ++
Sbjct: 11 LQYVDNKYTLSVLVAKRARQLLEQMQKKVDINLESDKYVTMAVNEIASGKISYKYIK 67
>gi|319442119|ref|ZP_07991275.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
variabile DSM 44702]
Length = 93
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
++D + KV +++ LV+ A+ R R ++ + P V + + +ALREI
Sbjct: 24 IDDLLTKVSSKYALVIFAAKRARQINNYFQNVGEGVFEFVGPLVAPENKEKPLSIALREI 83
Query: 54 ASGTL 58
+ L
Sbjct: 84 DADLL 88
>gi|212716896|ref|ZP_03325024.1| hypothetical protein BIFCAT_01840 [Bifidobacterium catenulatum
DSM 16992]
gi|225350757|ref|ZP_03741780.1| hypothetical protein BIFPSEUDO_02326 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|212660181|gb|EEB20756.1| hypothetical protein BIFCAT_01840 [Bifidobacterium catenulatum
DSM 16992]
gi|225158213|gb|EEG71455.1| hypothetical protein BIFPSEUDO_02326 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 94
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 13/77 (16%)
Query: 2 ARTTVEDCIDKVDNRFLLVLLASHRTRHLSQG-----------AKPTVDVGKDKNTV-VA 49
A ++D ++ D+++ L + A+ R R ++ P V+ + + +A
Sbjct: 13 AEPPIDDLMEHADSKYALAIFAAKRARQINSYFTQLNEGLLQNVGPLVEYQNQEKPLSIA 72
Query: 50 LREIASGTLSPDDLEED 66
REI G L + L ED
Sbjct: 73 FREINDGLLE-ETLGED 88
>gi|23335509|ref|ZP_00120744.1| COG1758: DNA-directed RNA polymerase, subunit K/omega
[Bifidobacterium longum DJO10A]
gi|23466331|ref|NP_696934.1| DNA-directed RNA polymerase subunit omega [Bifidobacterium longum
NCC2705]
gi|189440826|ref|YP_001955907.1| DNA-directed RNA polymerase subunit omega [Bifidobacterium longum
DJO10A]
gi|227546698|ref|ZP_03976747.1| DNA-directed RNA polymerase [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|239620674|ref|ZP_04663705.1| DNA-directed RNA polymerase subunit omega [Bifidobacterium longum
subsp. infantis CCUG 52486]
gi|312132290|ref|YP_003999629.1| rpoz [Bifidobacterium longum subsp. longum BBMN68]
gi|317481742|ref|ZP_07940774.1| DNA-directed RNA polymerase [Bifidobacterium sp. 12_1_47BFAA]
gi|322689703|ref|YP_004209437.1| DNA-directed RNA polymerase omega subunit [Bifidobacterium longum
subsp. infantis 157F]
gi|322691666|ref|YP_004221236.1| DNA-directed RNA polymerase omega subunit [Bifidobacterium longum
subsp. longum JCM 1217]
gi|32171664|sp|Q8G3H3|RPOZ_BIFLO RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226699547|sp|B3DRM7|RPOZ_BIFLD RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|23327087|gb|AAN25570.1| probable DNA-directed RNA polymerase omega chain [Bifidobacterium
longum NCC2705]
gi|189429261|gb|ACD99409.1| DNA-directed RNA polymerase subunit K [Bifidobacterium longum
DJO10A]
gi|227212660|gb|EEI80541.1| DNA-directed RNA polymerase [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|239516250|gb|EEQ56117.1| DNA-directed RNA polymerase subunit omega [Bifidobacterium longum
subsp. infantis CCUG 52486]
gi|291516258|emb|CBK69874.1| DNA-directed RNA polymerase, omega subunit [Bifidobacterium
longum subsp. longum F8]
gi|311772699|gb|ADQ02187.1| RpoZ [Bifidobacterium longum subsp. longum BBMN68]
gi|316916856|gb|EFV38246.1| DNA-directed RNA polymerase [Bifidobacterium sp. 12_1_47BFAA]
gi|320456522|dbj|BAJ67144.1| DNA-directed RNA polymerase omega subunit [Bifidobacterium longum
subsp. longum JCM 1217]
gi|320461039|dbj|BAJ71659.1| DNA-directed RNA polymerase omega subunit [Bifidobacterium longum
subsp. infantis 157F]
Length = 94
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 13/73 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
++D + D+++ L + A+ R R ++ P V+ ++ + +A REI
Sbjct: 17 IDDLMKHADSKYALAIFAAKRARQINSYFTQLNEGLLQNIGPLVEYQNNEKPLSIAFREI 76
Query: 54 ASGTLSPDDLEED 66
G L + L ED
Sbjct: 77 DEGLLE-ETLGED 88
>gi|296129697|ref|YP_003636947.1| DNA-directed RNA polymerase, omega subunit [Cellulomonas
flavigena DSM 20109]
gi|296021512|gb|ADG74748.1| DNA-directed RNA polymerase, omega subunit [Cellulomonas
flavigena DSM 20109]
Length = 88
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREIASGT 57
+++ D+++ LVL ++ R R ++ P V+ ++K +A+REI +G
Sbjct: 20 LERADSKYALVLFSAKRARQINAYYAQLNEGLLEYVGPLVETRPQEKPLSIAMREIDAGL 79
Query: 58 LSPDDLEED 66
L+ + L E
Sbjct: 80 LTSEQLPEA 88
>gi|331090884|ref|ZP_08339728.1| DNA-directed RNA polymerase subunit omega [Lachnospiraceae
bacterium 2_1_46FAA]
gi|330405530|gb|EGG85061.1| DNA-directed RNA polymerase subunit omega [Lachnospiraceae
bacterium 2_1_46FAA]
Length = 80
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 7 EDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV-DVGKDKNTVVALREIASGTLSP 60
E V++R+ +VL S R R L G P V +K +A+ E+ +G +
Sbjct: 19 EGATKIVNSRYSIVLATSKRARQLIDGDTPLVHTKDGEKPLSIAIDELNNGKIKI 73
>gi|328957294|ref|YP_004374680.1| DNA-directed RNA polymerase subunit omega [Carnobacterium sp.
17-4]
gi|328673618|gb|AEB29664.1| DNA-directed RNA polymerase subunit omega [Carnobacterium sp.
17-4]
Length = 70
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLS 59
M +++ ++K+++++ LV LAS R L +G+ P ++ KN AL EI +G L
Sbjct: 1 MLEPSIDSLLEKIESKYSLVTLASKRAHELDEGSMPMLENYRSHKNVGRALEEINNGDLV 60
Query: 60 PDDLE 64
D L
Sbjct: 61 IDPLT 65
>gi|311742363|ref|ZP_07716172.1| DNA-directed RNA polymerase subunit omega [Aeromicrobium marinum
DSM 15272]
gi|311313991|gb|EFQ83899.1| DNA-directed RNA polymerase subunit omega [Aeromicrobium marinum
DSM 15272]
Length = 90
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 37/71 (52%), Gaps = 12/71 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
++D ++K D+++ LVL ++ R R ++ P ++ + + +A+REI
Sbjct: 16 IDDLLEKADSKYKLVLYSAKRARQINAYYSQLGEGLLEYVGPLLETQVQEKPLSIAMREI 75
Query: 54 ASGTLSPDDLE 64
+ L+ +D+E
Sbjct: 76 NADLLTVEDIE 86
>gi|171743363|ref|ZP_02919170.1| hypothetical protein BIFDEN_02494 [Bifidobacterium dentium ATCC
27678]
gi|283455666|ref|YP_003360230.1| DNA-directed RNA polymerase omega chain [Bifidobacterium dentium
Bd1]
gi|306823307|ref|ZP_07456683.1| DNA-directed RNA polymerase subunit omega [Bifidobacterium
dentium ATCC 27679]
gi|309801925|ref|ZP_07696040.1| DNA-directed RNA polymerase, omega subunit [Bifidobacterium
dentium JCVIHMP022]
gi|171278977|gb|EDT46638.1| hypothetical protein BIFDEN_02494 [Bifidobacterium dentium ATCC
27678]
gi|283102300|gb|ADB09406.1| rpoZ DNA-directed RNA polymerase omega chain [Bifidobacterium
dentium Bd1]
gi|304553939|gb|EFM41850.1| DNA-directed RNA polymerase subunit omega [Bifidobacterium
dentium ATCC 27679]
gi|308221481|gb|EFO77778.1| DNA-directed RNA polymerase, omega subunit [Bifidobacterium
dentium JCVIHMP022]
Length = 94
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 13/73 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQG-----------AKPTVDVGKDKNTV-VALREI 53
++D ++ D+++ L + A+ R R ++ P V+ + + +A REI
Sbjct: 17 IDDLMEHADSKYALAIFAAKRARQINSYFTQLNEGLLQNVGPLVEYQNQEKPLSIAFREI 76
Query: 54 ASGTLSPDDLEED 66
G L + L ED
Sbjct: 77 NDGLLE-ETLGED 88
>gi|300784662|ref|YP_003764953.1| DNA-directed RNA polymerase subunit omega [Amycolatopsis
mediterranei U32]
gi|299794176|gb|ADJ44551.1| DNA-directed RNA polymerase subunit omega [Amycolatopsis
mediterranei U32]
Length = 89
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDV-GKDKNTVVALREI 53
++D ++KV +++ LV+ ++ R R ++ P V+ ++K +ALREI
Sbjct: 19 IDDLLEKVSSKYALVIYSAKRARQINDYYAQLGEGLLEYVGPLVEPGPREKPLSIALREI 78
Query: 54 ASGTL 58
G L
Sbjct: 79 HGGLL 83
>gi|257080475|ref|ZP_05574836.1| DNA-directed RNA polymerase [Enterococcus faecalis E1Sol]
gi|256988505|gb|EEU75807.1| DNA-directed RNA polymerase [Enterococcus faecalis E1Sol]
Length = 99
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLS 59
M + +++ + +V +++ LV+LAS R L +G +PTV+ K+ AL EI +GT+
Sbjct: 1 MLKPSIDSLLKEVPSKYSLVILASKRAHELDEGVQPTVESFDSAKSVGRALEEIEAGTVI 60
Query: 60 PD 61
D
Sbjct: 61 SD 62
>gi|260587856|ref|ZP_05853769.1| DNA-directed RNA polymerase, omega subunit [Blautia hansenii DSM
20583]
gi|331083858|ref|ZP_08332967.1| hypothetical protein HMPREF0992_01891 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260542121|gb|EEX22690.1| DNA-directed RNA polymerase, omega subunit [Blautia hansenii DSM
20583]
gi|330403283|gb|EGG82843.1| hypothetical protein HMPREF0992_01891 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 89
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTL 58
V +R+ +VL S R R L G + V K A+ EI G +
Sbjct: 25 VTSRYSVVLATSKRARQLIAGKEAMVPSSGKKPLSTAVEEIYKGKV 70
>gi|196247692|ref|ZP_03146394.1| DNA-directed RNA polymerase, omega subunit [Geobacillus sp.
G11MC16]
gi|196212476|gb|EDY07233.1| DNA-directed RNA polymerase, omega subunit [Geobacillus sp.
G11MC16]
Length = 66
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTL 58
+ KVD+++ LV + + R R L G++ V+ K V AL EIA +
Sbjct: 10 MKKVDSKYKLVTVVAKRARQLQDGSELMVNKPVSKKFVGQALEEIAGDKV 59
>gi|332685775|ref|YP_004455549.1| DNA-directed RNA polymerase subunit omega [Melissococcus
plutonius ATCC 35311]
gi|332369784|dbj|BAK20740.1| DNA-directed RNA polymerase omega subunit [Melissococcus
plutonius ATCC 35311]
Length = 102
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLS 59
M + +++ + KV +++ LV+LAS R L +G PT+D KN AL EI +G L
Sbjct: 2 MLKPSIDSLLKKVPSKYSLVILASKRAHELDEGMDPTLDSFESVKNVGRALEEINTGKLI 61
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSDFSW 91
D E+ +Q E + E D
Sbjct: 62 NDPHPEEKRERIQLAREEKKKIHEQEQKDLEE 93
>gi|152966935|ref|YP_001362719.1| DNA-directed RNA polymerase subunit omega [Kineococcus
radiotolerans SRS30216]
gi|189043987|sp|A6WCB6|RPOZ_KINRD RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|151361452|gb|ABS04455.1| DNA-directed RNA polymerase, omega subunit [Kineococcus
radiotolerans SRS30216]
Length = 88
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
++D + D+++ LV+ A+ R R ++ P V+ + + VA+REI
Sbjct: 16 IDDLLTAADSKYALVIYAAKRARQINAYYSQLGEGLLEYVGPLVETHVQEKALSVAMREI 75
Query: 54 ASGTLSPDDLEED 66
G L+ + +E+
Sbjct: 76 NEGLLTSEPIEQQ 88
>gi|309798770|ref|ZP_07693034.1| DNA-directed RNA polymerase omega chain [Streptococcus infantis
SK1302]
gi|308117587|gb|EFO54999.1| DNA-directed RNA polymerase omega chain [Streptococcus infantis
SK1302]
Length = 104
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA T + +K+T+ AL EI SG ++
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILEAKRAHELEAGAPATQEFKSEKSTLRALEEIESGNVTI 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|261337956|ref|ZP_05965840.1| DNA-directed RNA polymerase, omega subunit [Bifidobacterium
gallicum DSM 20093]
gi|270277451|gb|EFA23305.1| DNA-directed RNA polymerase, omega subunit [Bifidobacterium
gallicum DSM 20093]
Length = 94
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 13/73 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQG-----------AKPTVDVGKDKNTV-VALREI 53
++D ++ D+++ L + A+ R R ++ P V+ + + +A REI
Sbjct: 17 IDDLMEHADSKYALAIFAAKRARQINSYFTQLNEGLLQNVGPLVEYQNQEKPLSIAFREI 76
Query: 54 ASGTLSPDDLEED 66
G + + L ED
Sbjct: 77 NEGFVE-ETLGED 88
>gi|298256327|gb|ADI71436.1| putative DNA-directed RNA polymerase omega subunit [Amycolatopsis
orientalis subsp. vinearia]
Length = 89
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDV-GKDKNTVVALREI 53
++D ++KV +++ LV+ ++ R R ++ P V+ ++K +ALREI
Sbjct: 19 IDDLLEKVSSKYALVIYSAKRARQINDYYAQLGEGLLEYVGPLVEPGPREKPLSIALREI 78
Query: 54 ASGTL 58
G L
Sbjct: 79 HGGLL 83
>gi|159037478|ref|YP_001536731.1| DNA-directed RNA polymerase subunit omega [Salinispora arenicola
CNS-205]
gi|189043996|sp|A8LY23|RPOZ_SALAI RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|157916313|gb|ABV97740.1| DNA-directed RNA polymerase, omega subunit [Salinispora arenicola
CNS-205]
Length = 88
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVD-VGKDKNTVVALREI 53
+++ ++K +++ LV+ A+ R R ++ P V+ ++K +A+REI
Sbjct: 16 IDELLEKTTSKYALVIFAAKRARQVNAYYSQLGEGLLEYVGPLVETTPQEKPLSIAMREI 75
Query: 54 ASGTLSPD 61
G L+ +
Sbjct: 76 NGGLLTAE 83
>gi|313888525|ref|ZP_07822192.1| DNA-directed RNA polymerase, omega subunit [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845554|gb|EFR32948.1| DNA-directed RNA polymerase, omega subunit [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 100
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEEDFIHS 70
+ D+R+ L +L S R R L G VD DK +A+ EI +G + + D
Sbjct: 11 EVADSRYELAILVSKRARKLIDGNPALVDTDSDKPVTIAIEEIMAGKIKLGEKLSD---- 66
Query: 71 LQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEG 105
++ E + + K E L+ ++ E
Sbjct: 67 -SEYEEKIAEEKENLIQEIKQKKIEDLNKEEVEEE 100
>gi|332638336|ref|ZP_08417199.1| DNA-directed RNA polymerase subunit omega [Weissella cibaria KACC
11862]
Length = 71
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSPDD 62
V+ +++VD+R+ L+ L + R L QG PT+ K A EI +G + D+
Sbjct: 7 VDKLLERVDSRYKLIALGAKRAHELEQGGLPTLSHFDSVKPIGQAFEEIEAGNVVIDE 64
>gi|256372459|ref|YP_003110283.1| DNA-directed RNA polymerase, omega subunit [Acidimicrobium
ferrooxidans DSM 10331]
gi|256009043|gb|ACU54610.1| DNA-directed RNA polymerase, omega subunit [Acidimicrobium
ferrooxidans DSM 10331]
Length = 94
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQ---------GA--KPTVDVGKDKNTVVALREIA 54
+E+ ++ ++F+L+ LA+ R R ++ GA P V+ K +A EIA
Sbjct: 13 IEELLEHTGSKFVLITLAARRARQINDYRTHLGEGLGAMIPPQVESDVAKPLSLAFEEIA 72
Query: 55 SGTLSPDDLEEDFIHSLQKHVE 76
+G + PD + ED ++ E
Sbjct: 73 AGMIVPDVVAEDVTELVEDEAE 94
>gi|145594405|ref|YP_001158702.1| DNA-directed RNA polymerase subunit omega [Salinispora tropica
CNB-440]
gi|189043999|sp|A4X624|RPOZ_SALTO RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|145303742|gb|ABP54324.1| DNA-directed RNA polymerase, omega subunit [Salinispora tropica
CNB-440]
Length = 88
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVD-VGKDKNTVVALREI 53
+++ ++K +++ LV+ A+ R R ++ P V+ ++K +A+REI
Sbjct: 16 IDELLEKTTSKYALVIFAAKRARQVNAYYSQLGEGLLEYVGPLVETTPQEKPLSIAMREI 75
Query: 54 ASGTLSPD 61
G L+ +
Sbjct: 76 NGGLLTAE 83
>gi|146318078|ref|YP_001197790.1| DNA-directed RNA polymerase subunit omega [Streptococcus suis
05ZYH33]
gi|146320257|ref|YP_001199968.1| DNA-directed RNA polymerase subunit omega [Streptococcus suis
98HAH33]
gi|223932611|ref|ZP_03624611.1| DNA-directed RNA polymerase, omega subunit [Streptococcus suis
89/1591]
gi|330832245|ref|YP_004401070.1| DNA-directed RNA polymerase subunit omega [Streptococcus suis ST3]
gi|166991542|sp|A4VZM9|RPOZ_STRS2 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|166991544|sp|A4VTF1|RPOZ_STRSY RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|145688884|gb|ABP89390.1| DNA-directed RNA polymerase, subunit K/omega [Streptococcus suis
05ZYH33]
gi|145691063|gb|ABP91568.1| DNA-directed RNA polymerase, subunit K/omega [Streptococcus suis
98HAH33]
gi|223898721|gb|EEF65082.1| DNA-directed RNA polymerase, omega subunit [Streptococcus suis
89/1591]
gi|292557840|gb|ADE30841.1| RNA polymerase, omega subunit [Streptococcus suis GZ1]
gi|319757551|gb|ADV69493.1| DNA-directed RNA polymerase subunit omega [Streptococcus suis JS14]
gi|329306468|gb|AEB80884.1| DNA-directed RNA polymerase subunit omega [Streptococcus suis ST3]
Length = 104
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 48/101 (47%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GAKPT + K+T+ AL EI SG +
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILEAKRAHELEAGAKPTQEFTSVKSTLRALEEIESGNVVI 61
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQ 101
E ++++ E + + E + G+
Sbjct: 62 HPDPEAKREAVRRRAEEAKRLAEEEERKIKAQIAKEKEEGE 102
>gi|253751271|ref|YP_003024412.1| DNA-directed RNA polymerase omega chain [Streptococcus suis SC84]
gi|253753172|ref|YP_003026312.1| DNA-directed RNA polymerase omega chain [Streptococcus suis P1/7]
gi|253754995|ref|YP_003028135.1| DNA-directed RNA polymerase omega chain [Streptococcus suis BM407]
gi|302023427|ref|ZP_07248638.1| DNA-directed RNA polymerase subunit omega [Streptococcus suis
05HAS68]
gi|251815560|emb|CAZ51143.1| DNA-directed RNA polymerase omega chain [Streptococcus suis SC84]
gi|251817459|emb|CAZ55200.1| DNA-directed RNA polymerase omega chain [Streptococcus suis BM407]
gi|251819417|emb|CAR44887.1| DNA-directed RNA polymerase omega chain [Streptococcus suis P1/7]
Length = 103
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 48/101 (47%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GAKPT + K+T+ AL EI SG +
Sbjct: 1 MLKPSIDTLLDKVPSKYSLVILEAKRAHELEAGAKPTQEFTSVKSTLRALEEIESGNVVI 60
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQ 101
E ++++ E + + E + G+
Sbjct: 61 HPDPEAKREAVRRRAEEAKRLAEEEERKIKAQIAKEKEEGE 101
>gi|171778148|ref|ZP_02919405.1| hypothetical protein STRINF_00241 [Streptococcus infantarius
subsp. infantarius ATCC BAA-102]
gi|171283130|gb|EDT48554.1| hypothetical protein STRINF_00241 [Streptococcus infantarius
subsp. infantarius ATCC BAA-102]
Length = 103
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ L +L + R L GAKPT + K T+ AL EI SG +
Sbjct: 1 MLKPSIDTLLDKVPSKYSLCILQAKRAHELEAGAKPTQEFKSVKATLQALEEIESGNVVI 60
Query: 61 D 61
Sbjct: 61 H 61
>gi|225573634|ref|ZP_03782389.1| hypothetical protein RUMHYD_01828 [Blautia hydrogenotrophica DSM
10507]
gi|225039002|gb|EEG49248.1| hypothetical protein RUMHYD_01828 [Blautia hydrogenotrophica DSM
10507]
Length = 84
Score = 46.0 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTLSP 60
V +R+ +VL S R R L GA+P V K + +A+ E+ G +
Sbjct: 25 VSSRYSIVLATSKRARQLIAGAEPKVGGTHGKKPLSIAIDELYKGQVKI 73
>gi|15903624|ref|NP_359174.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae R6]
gi|116515579|ref|YP_817000.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae D39]
gi|148984181|ref|ZP_01817476.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae SP3-BS71]
gi|148989399|ref|ZP_01820767.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae SP6-BS73]
gi|148994056|ref|ZP_01823412.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae SP9-BS68]
gi|148997793|ref|ZP_01825357.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae SP11-BS70]
gi|149002042|ref|ZP_01826996.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae SP14-BS69]
gi|149020820|ref|ZP_01835349.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae SP23-BS72]
gi|169833679|ref|YP_001695112.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae Hungary19A-6]
gi|221232470|ref|YP_002511623.1| DNA-directed RNA polymerase omega chain [Streptococcus pneumoniae
ATCC 700669]
gi|225861559|ref|YP_002743068.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae Taiwan19F-14]
gi|237649150|ref|ZP_04523402.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae CCRI 1974]
gi|237820734|ref|ZP_04596579.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae CCRI 1974M2]
gi|289168460|ref|YP_003446729.1| DNA-dependent RNA Polymerase, omega subunit [Streptococcus mitis
B6]
gi|298503483|ref|YP_003725423.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae TCH8431/19A]
gi|303254349|ref|ZP_07340457.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae BS455]
gi|303258674|ref|ZP_07344654.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
pneumoniae SP-BS293]
gi|303263700|ref|ZP_07349622.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
pneumoniae BS397]
gi|303266640|ref|ZP_07352524.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
pneumoniae BS457]
gi|303268530|ref|ZP_07354323.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
pneumoniae BS458]
gi|307068362|ref|YP_003877328.1| DNA-directed RNA polymerase subunit K/omega [Streptococcus
pneumoniae AP200]
gi|307706103|ref|ZP_07642922.1| DNA-directed RNA polymerase, omega subunit [Streptococcus mitis
SK321]
gi|322377781|ref|ZP_08052270.1| DNA-directed RNA polymerase omega subunit [Streptococcus sp.
M334]
gi|122278154|sp|Q04J38|RPOZ_STRP2 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703184|sp|B1I7K0|RPOZ_STRPI RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|254809262|sp|B8ZMR0|RPOZ_STRPJ RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|254809266|sp|C1CSZ6|RPOZ_STRZT RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|15459248|gb|AAL00385.1| Hypothetical protein spr1582 [Streptococcus pneumoniae R6]
gi|116076155|gb|ABJ53875.1| DNA-directed RNA polymerase omega chain, putative [Streptococcus
pneumoniae D39]
gi|147756292|gb|EDK63334.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae SP11-BS70]
gi|147759851|gb|EDK66841.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae SP14-BS69]
gi|147923470|gb|EDK74583.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae SP3-BS71]
gi|147925149|gb|EDK76229.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae SP6-BS73]
gi|147927523|gb|EDK78551.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae SP9-BS68]
gi|147930461|gb|EDK81444.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae SP23-BS72]
gi|168996181|gb|ACA36793.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
pneumoniae Hungary19A-6]
gi|220674931|emb|CAR69507.1| DNA-directed RNA polymerase omega chain [Streptococcus pneumoniae
ATCC 700669]
gi|225727286|gb|ACO23137.1| DNA-directed RNA polymerase omega chain [Streptococcus pneumoniae
Taiwan19F-14]
gi|288908027|emb|CBJ22867.1| DNA-dependent RNA Polymerase, omega subunit [Streptococcus mitis
B6]
gi|298239078|gb|ADI70209.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae TCH8431/19A]
gi|301794712|emb|CBW37163.1| DNA-directed RNA polymerase omega chain [Streptococcus pneumoniae
INV104]
gi|301800542|emb|CBW33182.1| DNA-directed RNA polymerase omega chain [Streptococcus pneumoniae
OXC141]
gi|301802438|emb|CBW35193.1| DNA-directed RNA polymerase omega chain [Streptococcus pneumoniae
INV200]
gi|302598700|gb|EFL65738.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae BS455]
gi|302640175|gb|EFL70630.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
pneumoniae SP-BS293]
gi|302641925|gb|EFL72279.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
pneumoniae BS458]
gi|302643802|gb|EFL74065.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
pneumoniae BS457]
gi|302646738|gb|EFL76963.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
pneumoniae BS397]
gi|306409899|gb|ADM85326.1| DNA-directed RNA polymerase, subunit K/omega [Streptococcus
pneumoniae AP200]
gi|307618503|gb|EFN97651.1| DNA-directed RNA polymerase, omega subunit [Streptococcus mitis
SK321]
gi|321281204|gb|EFX58215.1| DNA-directed RNA polymerase omega subunit [Streptococcus sp.
M334]
gi|327389922|gb|EGE88267.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
pneumoniae GA04375]
Length = 104
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA T +K+T+ AL EI SG ++
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILEAKRAHELEAGAPATQGFKSEKSTLRALEEIESGNVTI 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|227431079|ref|ZP_03913138.1| DNA-directed RNA polymerase [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
gi|227353155|gb|EEJ43322.1| DNA-directed RNA polymerase [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
Length = 81
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLSPDDLE 64
V+ ++KVD+R+ L+ L + R R L G T + +K+ AL EI +G + D
Sbjct: 18 VDKLLEKVDSRYKLIALGAKRARELDAGLPATQETFESNKSVGQALEEIENGAVIIDPKF 77
Query: 65 EDFI 68
ED +
Sbjct: 78 EDEV 81
>gi|256545174|ref|ZP_05472540.1| DNA-directed RNA polymerase subunit omega (RNA polymerase omega
subunit) [Anaerococcus vaginalis ATCC 51170]
gi|256399215|gb|EEU12826.1| DNA-directed RNA polymerase subunit omega (RNA polymerase omega
subunit) [Anaerococcus vaginalis ATCC 51170]
Length = 62
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDD 62
+ +R+ + ++A+ R R + G+ +DK AL EI G + +D
Sbjct: 11 EISSSRYEICMMAAKRARRIVNGSDLLTKEVEDKPVTQALHEIMEGKVEKND 62
>gi|182684681|ref|YP_001836428.1| DNA-directed RNA polymerase omega subunit [Streptococcus
pneumoniae CGSP14]
gi|226703185|sp|B2IS88|RPOZ_STRPS RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|182630015|gb|ACB90963.1| DNA-directed RNA polymerase omega subunit [Streptococcus
pneumoniae CGSP14]
Length = 104
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA T +K+T+ AL EI SG ++
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILEAKRAHELEAGAPATQGFKSEKSTLRALEEIESGNVTI 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|15901569|ref|NP_346173.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae TIGR4]
gi|111657686|ref|ZP_01408414.1| hypothetical protein SpneT_02001120 [Streptococcus pneumoniae
TIGR4]
gi|149006594|ref|ZP_01830293.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae SP18-BS74]
gi|149011395|ref|ZP_01832642.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae SP19-BS75]
gi|168488544|ref|ZP_02712743.1| dna-directed rna polymerase omega chain (rnap omegasubunit)
(transcriptase omega chain) (rna polymerase omega
subunit) [Streptococcus pneumoniae SP195]
gi|168491380|ref|ZP_02715523.1| dna-directed rna polymerase omega chain (rnap omegasubunit)
(transcriptase omega chain) (rna polymerase omega
subunit) [Streptococcus pneumoniae CDC0288-04]
gi|168493647|ref|ZP_02717790.1| dna-directed rna polymerase omega chain (rnap omegasubunit)
(transcriptase omega chain) (rna polymerase omega
subunit) [Streptococcus pneumoniae CDC3059-06]
gi|172079527|ref|ZP_02708228.2| dna-directed rna polymerase omega chain (rnap omegasubunit)
(transcriptase omega chain) (rna polymerase omega
subunit) [Streptococcus pneumoniae CDC1873-00]
gi|183603776|ref|ZP_02721034.2| dna-directed rna polymerase omega chain (rnap omegasubunit)
(transcriptase omega chain) (rna polymerase omega
subunit) [Streptococcus pneumoniae MLV-016]
gi|194398149|ref|YP_002038348.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae G54]
gi|225855168|ref|YP_002736680.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae JJA]
gi|225857350|ref|YP_002738861.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae P1031]
gi|225859490|ref|YP_002741000.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae 70585]
gi|298230279|ref|ZP_06963960.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae str. Canada MDR_19F]
gi|303261837|ref|ZP_07347783.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae SP14-BS292]
gi|307127951|ref|YP_003879982.1| DNA-directed RNA polymerase omega chain [Streptococcus pneumoniae
670-6B]
gi|307704309|ref|ZP_07641227.1| DNA-directed RNA polymerase, omega subunit [Streptococcus mitis
SK597]
gi|307710614|ref|ZP_07647048.1| DNA-directed RNA polymerase, omega subunit [Streptococcus mitis
SK564]
gi|54039290|sp|P66731|RPOZ_STRR6 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|54042198|sp|P66730|RPOZ_STRPN RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703183|sp|B5E7F9|RPOZ_STRP4 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|254809261|sp|C1C8X4|RPOZ_STRP7 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|254809264|sp|C1CFV9|RPOZ_STRZJ RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|254809265|sp|C1CM73|RPOZ_STRZP RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|14973232|gb|AAK75813.1| putative DNA-directed RNA polymerase, omega subunit
[Streptococcus pneumoniae TIGR4]
gi|147761892|gb|EDK68855.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae SP18-BS74]
gi|147764385|gb|EDK71316.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae SP19-BS75]
gi|172043201|gb|EDT51247.1| dna-directed rna polymerase omega chain (rnap omegasubunit)
(transcriptase omega chain) (rna polymerase omega
subunit) [Streptococcus pneumoniae CDC1873-00]
gi|183572860|gb|EDT93388.1| dna-directed rna polymerase omega chain (rnap omegasubunit)
(transcriptase omega chain) (rna polymerase omega
subunit) [Streptococcus pneumoniae SP195]
gi|183574294|gb|EDT94822.1| dna-directed rna polymerase omega chain (rnap omegasubunit)
(transcriptase omega chain) (rna polymerase omega
subunit) [Streptococcus pneumoniae CDC0288-04]
gi|183576465|gb|EDT96993.1| dna-directed rna polymerase omega chain (rnap omegasubunit)
(transcriptase omega chain) (rna polymerase omega
subunit) [Streptococcus pneumoniae CDC3059-06]
gi|183578746|gb|EDT99274.1| dna-directed rna polymerase omega chain (rnap omegasubunit)
(transcriptase omega chain) (rna polymerase omega
subunit) [Streptococcus pneumoniae MLV-016]
gi|194357816|gb|ACF56264.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
pneumoniae G54]
gi|225720445|gb|ACO16299.1| DNA-directed RNA polymerase omega chain [Streptococcus pneumoniae
70585]
gi|225723801|gb|ACO19654.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
pneumoniae JJA]
gi|225725313|gb|ACO21165.1| DNA-directed RNA polymerase omega chain [Streptococcus pneumoniae
P1031]
gi|302636920|gb|EFL67409.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae SP14-BS292]
gi|306485013|gb|ADM91882.1| DNA-directed RNA polymerase omega chain [Streptococcus pneumoniae
670-6B]
gi|307618659|gb|EFN97801.1| DNA-directed RNA polymerase, omega subunit [Streptococcus mitis
SK564]
gi|307622145|gb|EFO01164.1| DNA-directed RNA polymerase, omega subunit [Streptococcus mitis
SK597]
gi|332072568|gb|EGI83051.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
pneumoniae GA17570]
gi|332072911|gb|EGI83392.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
pneumoniae GA17545]
gi|332074077|gb|EGI84555.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
pneumoniae GA41301]
gi|332199763|gb|EGJ13838.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
pneumoniae GA41317]
gi|332200297|gb|EGJ14370.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
pneumoniae GA47368]
Length = 103
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA T +K+T+ AL EI SG ++
Sbjct: 1 MLKPSIDTLLDKVPSKYSLVILEAKRAHELEAGAPATQGFKSEKSTLRALEEIESGNVTI 60
Query: 61 D 61
Sbjct: 61 H 61
>gi|327398630|ref|YP_004339499.1| RNA polymerase Rpb6 [Hippea maritima DSM 10411]
gi|327181259|gb|AEA33440.1| RNA polymerase Rpb6 [Hippea maritima DSM 10411]
Length = 67
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDV---GKDKNTVVALREIASGT 57
+ +R+ LV +A+ R L +G KP + KNT+V+L EI G
Sbjct: 13 LRHFPSRYELVRVAAIRANSLFRGDKPLISNSFASAHKNTIVSLMEIKEGL 63
>gi|298254898|ref|ZP_06978484.1| DNA-directed RNA polymerase subunit omega [Streptococcus
pneumoniae str. Canada MDR_19A]
Length = 103
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA T +K+T+ AL EI SG ++
Sbjct: 1 MLKPSIDTLLDKVPSKYSLVILEAKRAHELEAGAPATQGFKSEKSTLRALEEIESGNVTI 60
Query: 61 D 61
Sbjct: 61 H 61
>gi|302525873|ref|ZP_07278215.1| DNA-directed RNA polymerase, omega subunit [Streptomyces sp. AA4]
gi|302434768|gb|EFL06584.1| DNA-directed RNA polymerase, omega subunit [Streptomyces sp. AA4]
Length = 89
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 12/63 (19%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDV-GKDKNTVVALREIAS 55
D ++KV +++ LV+ ++ R R ++ P V+ ++K +ALREI
Sbjct: 21 DLLEKVSSKYALVIYSAKRARQINDYYAQLGEGLLEYVGPLVEPGPREKPLSIALREIHG 80
Query: 56 GTL 58
G L
Sbjct: 81 GLL 83
>gi|306830707|ref|ZP_07463872.1| DNA-directed RNA polymerase subunit omega [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|320547881|ref|ZP_08042164.1| DNA-directed RNA polymerase subunit omega [Streptococcus equinus
ATCC 9812]
gi|325977625|ref|YP_004287341.1| DNA-directed RNA polymerase subunit omega [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|304427215|gb|EFM30322.1| DNA-directed RNA polymerase subunit omega [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|320447421|gb|EFW88181.1| DNA-directed RNA polymerase subunit omega [Streptococcus equinus
ATCC 9812]
gi|325177553|emb|CBZ47597.1| DNA-directed RNA polymerase subunit omega [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
Length = 104
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ L +L + R L GAKPT + K T+ AL EI SG +
Sbjct: 2 MLKPSIDTLLDKVPSKYSLCILQAKRAHELEAGAKPTQEFKSVKATLQALEEIESGNVVI 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|291524772|emb|CBK90359.1| DNA-directed RNA polymerase, omega subunit [Eubacterium rectale
DSM 17629]
gi|291528907|emb|CBK94493.1| DNA-directed RNA polymerase, omega subunit [Eubacterium rectale
M104/1]
Length = 86
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVGK-DKNTVVALREIASGTLSPDDLEEDF 67
V++R+ +V+ A+ R R + GA+P + K +K +A+ E+ +G + +ED
Sbjct: 25 VNSRYSIVIAAAKRARQIIDGAEPLIARPKCNKPLSIAVEELYTGAVRIVSDDEDL 80
>gi|317505992|ref|ZP_07963824.1| DNA-directed RNA polymerase [Segniliparus rugosus ATCC BAA-974]
gi|316255768|gb|EFV15006.1| DNA-directed RNA polymerase [Segniliparus rugosus ATCC BAA-974]
Length = 90
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ ++ V +++ LV+ + R R ++ P V+ G ++K +ALREI
Sbjct: 18 IDELLEHVSSKYALVIYGAKRARQINDYYTQLGEGLFDYVGPLVEPGLQEKPLSIALREI 77
Query: 54 ASGTL 58
G L
Sbjct: 78 HEGLL 82
>gi|169333673|ref|ZP_02860866.1| hypothetical protein ANASTE_00057 [Anaerofustis stercorihominis
DSM 17244]
gi|169259667|gb|EDS73633.1| hypothetical protein ANASTE_00057 [Anaerofustis stercorihominis
DSM 17244]
Length = 89
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEE-DFI 68
++KVDN+++L +L + R+R L G +P VD A+ E+ + +EE D
Sbjct: 13 LEKVDNKYVLAMLVAKRSRELFDGDEPMVDEYFVNLITTAVEEVYEDRIGYYLIEEGDRK 72
Query: 69 HSLQKHVEIDE 79
+ + K V+++E
Sbjct: 73 YKVHKSVDLNE 83
>gi|322391004|ref|ZP_08064509.1| DNA-directed RNA polymerase subunit omega [Streptococcus
parasanguinis ATCC 903]
gi|321142308|gb|EFX37781.1| DNA-directed RNA polymerase subunit omega [Streptococcus
parasanguinis ATCC 903]
Length = 104
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA PT + K+T+ AL EI SG +
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILEAKRAHELESGAVPTQEFQSVKSTLQALEEIESGNVVV 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|288904704|ref|YP_003429925.1| DNA-directed RNA polymerase omega chain [Streptococcus
gallolyticus UCN34]
gi|288731429|emb|CBI12981.1| DNA-directed RNA polymerase omega chain [Streptococcus
gallolyticus UCN34]
Length = 103
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ L +L + R L GAKPT + K T+ AL EI SG +
Sbjct: 1 MLKPSIDTLLDKVPSKYSLCILQAKRAHELEAGAKPTQEFKSVKATLQALEEIESGNVVI 60
Query: 61 D 61
Sbjct: 61 H 61
>gi|284991550|ref|YP_003410104.1| DNA-directed RNA polymerase subunit omega [Geodermatophilus
obscurus DSM 43160]
gi|284064795|gb|ADB75733.1| DNA-directed RNA polymerase, omega subunit [Geodermatophilus
obscurus DSM 43160]
Length = 87
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ +++ +++ LV+ A+ R R ++ P VD ++K +ALREI
Sbjct: 16 IDELLERTSSKYGLVIFAAKRARQINAYYSQLSEGLLEYVGPLVDTAPQEKPLSIALREI 75
Query: 54 ASGTLS 59
G L+
Sbjct: 76 NEGLLT 81
>gi|116495110|ref|YP_806844.1| DNA-directed RNA polymerase, subunit K/omega [Lactobacillus casei
ATCC 334]
gi|191638615|ref|YP_001987781.1| DNA-directed RNA polymerase subunit omega (RNAP omega subunit)
(Transcriptase subunit omega) (RNA polymerase omega
subunit) [Lactobacillus casei BL23]
gi|227534875|ref|ZP_03964924.1| DNA-directed RNA polymerase [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|239631989|ref|ZP_04675020.1| DNA-directed RNA polymerase subunit omega [Lactobacillus
paracasei subsp. paracasei 8700:2]
gi|301066674|ref|YP_003788697.1| DNA-directed RNA polymerase subunit K/omega [Lactobacillus casei
str. Zhang]
gi|122263473|sp|Q038H0|RPOZ_LACC3 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226703144|sp|B3WEX2|RPOZ_LACCB RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|116105260|gb|ABJ70402.1| DNA-directed RNA polymerase subunit omega [Lactobacillus casei
ATCC 334]
gi|190712917|emb|CAQ66923.1| DNA-directed RNA polymerase subunit omega (RNAP omega subunit)
(Transcriptase subunit omega) (RNA polymerase omega
subunit) [Lactobacillus casei BL23]
gi|227187631|gb|EEI67698.1| DNA-directed RNA polymerase [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|239526454|gb|EEQ65455.1| DNA-directed RNA polymerase subunit omega [Lactobacillus
paracasei subsp. paracasei 8700:2]
gi|300439081|gb|ADK18847.1| DNA-directed RNA polymerase, subunit K/omega [Lactobacillus casei
str. Zhang]
gi|327382657|gb|AEA54133.1| DNA-directed RNA polymerase subunit omega [Lactobacillus casei
LC2W]
gi|327385851|gb|AEA57325.1| DNA-directed RNA polymerase subunit omega [Lactobacillus casei
BD-II]
Length = 82
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLSPD 61
++ ++KV +R+ L +LA+ R L G K D DK+ AL EIA+G + D
Sbjct: 7 IDKLLEKVPSRYSLAVLAAKRAHELESGDLKMLSDYKSDKSVGKALEEIAAGDVIID 63
>gi|291457413|ref|ZP_06596803.1| DNA-directed RNA polymerase, omega subunit [Bifidobacterium breve
DSM 20213]
gi|291381248|gb|EFE88766.1| DNA-directed RNA polymerase, omega subunit [Bifidobacterium breve
DSM 20213]
Length = 94
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 13/73 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQG-----------AKPTVDVGKDKNTV-VALREI 53
++D + D+++ L + A+ R R ++ P V+ ++ + +A REI
Sbjct: 17 IDDLMQHADSKYALAIFAAKRARQINSYFTQLNEGLLQNVGPLVEYQNNEKPLSIAFREI 76
Query: 54 ASGTLSPDDLEED 66
G L + L ED
Sbjct: 77 DEGLLE-ETLGED 88
>gi|324994075|gb|EGC25989.1| DNA-directed RNA polymerase subunit omega [Streptococcus sanguinis
SK678]
gi|327459281|gb|EGF05627.1| DNA-directed RNA polymerase subunit omega [Streptococcus sanguinis
SK1]
gi|327472707|gb|EGF18134.1| DNA-directed RNA polymerase subunit omega [Streptococcus sanguinis
SK408]
gi|327490499|gb|EGF22280.1| DNA-directed RNA polymerase subunit omega [Streptococcus sanguinis
SK1058]
Length = 104
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 45/101 (44%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA T + K+T+ AL EI SG +
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILEAKRAHELEAGAPATQEFKSVKSTLRALEEIESGNVVI 61
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQ 101
E ++++ E + E + G+
Sbjct: 62 HPDPEGKREAVRRRAEEELLRKEEEERKIKEQIAKEKEEGE 102
>gi|255994509|ref|ZP_05427644.1| DNA-directed RNA polymerase, omega subunit [Eubacterium saphenum
ATCC 49989]
gi|255993222|gb|EEU03311.1| DNA-directed RNA polymerase, omega subunit [Eubacterium saphenum
ATCC 49989]
Length = 69
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEEDF 67
KVD+R+ LV+LA+ R + + +G +V D+ VA EI G ++ EE
Sbjct: 11 QKVDSRYTLVMLAALRAKDIVEGKPKLTNVDVDRPISVAATEIDEGLITYVREEEKA 67
>gi|312867894|ref|ZP_07728099.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
parasanguinis F0405]
gi|311096649|gb|EFQ54888.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
parasanguinis F0405]
Length = 103
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA PT + K+T+ AL EI SG +
Sbjct: 1 MLKPSIDTLLDKVPSKYSLVILEAKRAHELESGAVPTQEFQSVKSTLQALEEIESGNVVV 60
Query: 61 D 61
Sbjct: 61 H 61
>gi|125718648|ref|YP_001035781.1| DNA-directed RNA polymerase subunit omega [Streptococcus
sanguinis SK36]
gi|323350304|ref|ZP_08085969.1| DNA-directed RNA polymerase subunit omega [Streptococcus
sanguinis VMC66]
gi|166991543|sp|A3CPX6|RPOZ_STRSV RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|125498565|gb|ABN45231.1| DNA-directed RNA polymerase, subunit K/omega, putative
[Streptococcus sanguinis SK36]
gi|322123489|gb|EFX95160.1| DNA-directed RNA polymerase subunit omega [Streptococcus
sanguinis VMC66]
gi|324991768|gb|EGC23700.1| DNA-directed RNA polymerase subunit omega [Streptococcus
sanguinis SK353]
gi|324991978|gb|EGC23900.1| DNA-directed RNA polymerase subunit omega [Streptococcus
sanguinis SK405]
gi|325686920|gb|EGD28944.1| DNA-directed RNA polymerase subunit omega [Streptococcus
sanguinis SK72]
gi|325688778|gb|EGD30787.1| DNA-directed RNA polymerase subunit omega [Streptococcus
sanguinis SK115]
gi|325695220|gb|EGD37121.1| DNA-directed RNA polymerase subunit omega [Streptococcus
sanguinis SK150]
gi|325697706|gb|EGD39591.1| DNA-directed RNA polymerase subunit omega [Streptococcus
sanguinis SK160]
gi|327462450|gb|EGF08775.1| DNA-directed RNA polymerase subunit omega [Streptococcus
sanguinis SK1057]
gi|327467214|gb|EGF12718.1| DNA-directed RNA polymerase subunit omega [Streptococcus
sanguinis SK330]
gi|328945033|gb|EGG39189.1| DNA-directed RNA polymerase subunit omega [Streptococcus
sanguinis SK1087]
gi|332358056|gb|EGJ35889.1| DNA-directed RNA polymerase subunit omega [Streptococcus
sanguinis SK1056]
gi|332362984|gb|EGJ40773.1| DNA-directed RNA polymerase subunit omega [Streptococcus
sanguinis SK49]
gi|332364578|gb|EGJ42347.1| DNA-directed RNA polymerase subunit omega [Streptococcus
sanguinis SK1059]
Length = 104
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA T + K+T+ AL EI SG +
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILEAKRAHELEAGAPATQEFKSVKSTLRALEEIESGNVVI 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|299139043|ref|ZP_07032220.1| RNA polymerase Rpb6 [Acidobacterium sp. MP5ACTX8]
gi|298599197|gb|EFI55358.1| RNA polymerase Rpb6 [Acidobacterium sp. MP5ACTX8]
Length = 68
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDL 63
D N++ LV A+ R R L GA P K VA E+ +G ++ +
Sbjct: 6 DLFQNKYSLVKGAARRARQLQSGAPPLGVSTSMKACRVAQDEVRAGKVTYSVM 58
>gi|15840849|ref|NP_335886.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
tuberculosis CDC1551]
gi|13881048|gb|AAK45700.1| DNA-directed RNA polymerase, omega subunit, putative [Mycobacterium
tuberculosis CDC1551]
Length = 133
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ +D+V +++ LV+ A+ R R ++ P V+ G ++K +ALREI
Sbjct: 63 IDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREI 122
Query: 54 ASGTL 58
+ L
Sbjct: 123 HADLL 127
>gi|332201160|gb|EGJ15231.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
pneumoniae GA47901]
Length = 104
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA T +K+T+ AL EI SG ++
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILEAKRAHELEAGAPATQGFKSEKSTLRALEEIESGNVTI 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|225155469|ref|ZP_03723960.1| DNA-directed RNA polymerase, omega subunit [Opitutaceae bacterium
TAV2]
gi|224803770|gb|EEG22002.1| DNA-directed RNA polymerase, omega subunit [Opitutaceae bacterium
TAV2]
Length = 72
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLSPD 61
+++ + +D+ ++L+ + S R + L QG +P V+ K + VALREI G +
Sbjct: 6 IQNALKVIDDPYILINVVSRRVKQLRQGHRPLVESLEKMEPEDVALREIFEGKIIYK 62
>gi|315161198|gb|EFU05215.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecalis
TX0645]
Length = 99
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLS 59
M + +++ + +V +++ L++LAS R L +G +PTV+ K+ AL EI +GT+
Sbjct: 1 MLKPSIDSLLKEVPSKYSLIILASKRAHELDEGVQPTVESFDSVKSVGRALEEIEAGTVI 60
Query: 60 PD 61
D
Sbjct: 61 SD 62
>gi|297562037|ref|YP_003681011.1| DNA-directed RNA polymerase subunit omega [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
gi|296846485|gb|ADH68505.1| DNA-directed RNA polymerase, omega subunit [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length = 88
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 12/68 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGK-DKNTVVALREI 53
++D ++ VD+++ LV +AS R R ++ P V+ +K+ +ALRE+
Sbjct: 16 IDDLLELVDSKYSLVTMASKRARQINAYYAQLGEGLLEYVGPLVETQVQEKSLSIALREV 75
Query: 54 ASGTLSPD 61
SG L+ +
Sbjct: 76 RSGLLTAE 83
>gi|229817253|ref|ZP_04447535.1| hypothetical protein BIFANG_02513 [Bifidobacterium angulatum DSM
20098]
gi|229785042|gb|EEP21156.1| hypothetical protein BIFANG_02513 [Bifidobacterium angulatum DSM
20098]
Length = 94
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 13/73 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQG-----------AKPTVDVGK-DKNTVVALREI 53
++D + D+++ L + A+ R R ++ P V+ DK +A REI
Sbjct: 17 IDDLMKHADSKYALAIFAAKRARQINSYFTQLNEGLLQNVGPLVEYQSQDKPLSIAFREI 76
Query: 54 ASGTLSPDDLEED 66
G L + L ED
Sbjct: 77 DEGLLE-ETLGED 88
>gi|38233913|ref|NP_939680.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
diphtheriae NCTC 13129]
gi|41688613|sp|P60333|RPOZ_CORDI RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|38200174|emb|CAE49855.1| Putative DNA-directed RNA polymerase omega chain [Corynebacterium
diphtheriae]
Length = 92
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTV-DVGKDKNTVVALREI 53
+++ + V +++ LV+ A+ R R ++ + P V ++K +A+REI
Sbjct: 23 IDELLKHVSSKYALVIFAAKRARQINSYYQQADEGVFEFVGPLVTPEAQEKPLSIAMREI 82
Query: 54 ASGTLSPDD 62
+G L ++
Sbjct: 83 EAGLLDHEE 91
>gi|238924036|ref|YP_002937552.1| hypothetical protein EUBREC_1674 [Eubacterium rectale ATCC 33656]
gi|259494497|sp|C4Z9X7|RPOZ_EUBR3 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|238875711|gb|ACR75418.1| Hypothetical protein EUBREC_1674 [Eubacterium rectale ATCC 33656]
Length = 86
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVGK-DKNTVVALREIASGTLSPDDLEEDF 67
V++R+ +V+ A+ R R + GA+P + K +K +A+ E+ +G + +ED
Sbjct: 25 VNSRYSIVIAAAKRARQIIDGAEPLIAHPKCNKPLSIAVEELYTGAVRIVSDDEDL 80
>gi|134299557|ref|YP_001113053.1| DNA-directed RNA polymerase subunit omega [Desulfotomaculum
reducens MI-1]
gi|134052257|gb|ABO50228.1| DNA-directed RNA polymerase subunit omega [Desulfotomaculum
reducens MI-1]
Length = 75
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M R +++ + +VD+R+ LV+ A+ R R L++ T K +AL EI+ G ++
Sbjct: 8 MNRPSLDQLMTRVDSRYTLVVAAAKRARFLTEDEMKTNTPLHAKPVTLALEEISDGDVTY 67
Query: 61 DDLE 64
+
Sbjct: 68 RRIR 71
>gi|197303018|ref|ZP_03168066.1| hypothetical protein RUMLAC_01745 [Ruminococcus lactaris ATCC
29176]
gi|197297873|gb|EDY32425.1| hypothetical protein RUMLAC_01745 [Ruminococcus lactaris ATCC
29176]
Length = 82
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK-DKNTVVALREIASGTLSP 60
V++R+ +V+ S R R L G P V DK +A+ E+ G L
Sbjct: 23 KIVNSRYSIVMATSKRARQLIAGELPLVPAKNGDKPLSIAIEELNEGKLKI 73
>gi|116618801|ref|YP_819172.1| DNA-directed RNA polymerase, subunit K/omega [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
gi|116097648|gb|ABJ62799.1| DNA-directed RNA polymerase subunit omega [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 70
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLSPDDLE 64
V+ ++KVD+R+ L+ L + R R L G T + +K+ AL EI +G + D
Sbjct: 7 VDKLLEKVDSRYKLIALGAKRARELDAGLPATQETFESNKSVGQALEEIENGAVIIDPKF 66
Query: 65 EDFI 68
ED +
Sbjct: 67 EDEV 70
>gi|296170744|ref|ZP_06852316.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295894559|gb|EFG74296.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 108
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ +D+V +++ LV+ A+ R R ++ P V+ G ++K +ALREI
Sbjct: 38 IDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREI 97
Query: 54 ASGTL 58
+ L
Sbjct: 98 HADLL 102
>gi|23098958|ref|NP_692424.1| DNA-directed RNA polymerase omega subunit [Oceanobacillus
iheyensis HTE831]
gi|32171653|sp|Q8ER27|RPOZ_OCEIH RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|22777186|dbj|BAC13459.1| DNA-directed RNA polymerase omega subunit [Oceanobacillus
iheyensis HTE831]
Length = 64
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSPDD 62
++ +++ LV L++ R R LS+ +P V+ K +AL EI +G L ++
Sbjct: 12 KRIKSKYSLVTLSARRARQLSETNQPLVEKSKSHKFVGMALEEIEAGKLYIEN 64
>gi|325479326|gb|EGC82422.1| DNA-directed RNA polymerase, omega subunit [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 61
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 9/51 (17%), Positives = 21/51 (41%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPD 61
+ +R+ + ++ + R R + G+ + K AL EI ++
Sbjct: 11 EISPSRYEICMMCAKRARRIVNGSAALTKEVEAKPVTQALHEIIEEKVTKK 61
>gi|291459578|ref|ZP_06598968.1| DNA-directed RNA polymerase subunit omega [Oribacterium sp. oral
taxon 078 str. F0262]
gi|291417856|gb|EFE91575.1| DNA-directed RNA polymerase subunit omega [Oribacterium sp. oral
taxon 078 str. F0262]
Length = 139
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 7 EDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTLSPD--DL 63
ED V++R+ +V+ ++ R R + G++P + + K + +A+ EI+ ++ + L
Sbjct: 18 EDREKDVESRYSVVIASAKRARQIIDGSEPLLPGEEGKKPLSIAIEEISKNVVTIERGSL 77
Query: 64 EEDFIHSL---QKHVEIDEPDSPTENS 87
EED SL Q+ + EN
Sbjct: 78 EEDGPDSLPVGQRDYASYSAEEDEEND 104
>gi|327441115|dbj|BAK17480.1| DNA-directed RNA polymerase, subunit K/omega [Solibacillus
silvestris StLB046]
Length = 74
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLSPDDLE 64
V+ ++D+++ LV LAS R R + +G + K AL E+A+G L +
Sbjct: 6 VDKLKKQIDSKYSLVSLASKRARQMQEEGGEHLSSYVSYKPVGKALEEVAAGKLRKVQQD 65
Query: 65 EDFIHS 70
++
Sbjct: 66 ASTVYE 71
>gi|307708277|ref|ZP_07644744.1| DNA-directed RNA polymerase omega chain [Streptococcus mitis NCTC
12261]
gi|307615723|gb|EFN94929.1| DNA-directed RNA polymerase omega chain [Streptococcus mitis NCTC
12261]
Length = 103
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GA T +K+T+ AL EI SG ++
Sbjct: 1 MLKPSIDTLLDKVPSKYSLVILEAKRAHELEAGAPTTQGFKSEKSTLRALEEIESGNVTI 60
Query: 61 D 61
Sbjct: 61 H 61
>gi|84496650|ref|ZP_00995504.1| DNA-directed RNA polymerase omega subunit [Janibacter sp.
HTCC2649]
gi|84383418|gb|EAP99299.1| DNA-directed RNA polymerase omega subunit [Janibacter sp.
HTCC2649]
Length = 87
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
+++ + D+++ LVL ++ R R ++ P VD + + +ALREI
Sbjct: 16 IDELLTHADSKYSLVLYSAKRARQINAYYAQLQDGLLEYVGPLVDAEVHEKPLSIALREI 75
Query: 54 ASGTLSPDDLEE 65
L+ + +E+
Sbjct: 76 NGNLLTSEKIED 87
>gi|269956508|ref|YP_003326297.1| DNA-directed RNA polymerase subunit omega [Xylanimonas
cellulosilytica DSM 15894]
gi|269305189|gb|ACZ30739.1| DNA-directed RNA polymerase, omega subunit [Xylanimonas
cellulosilytica DSM 15894]
Length = 97
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
+++ + K D+++ LVL A+ R R ++ P VDV + + +A+REI
Sbjct: 16 IDELLAKTDSKYGLVLYAAKRARQINAYYSQLNEGLLENVGPLVDVRIQEKPLSIAMREI 75
Query: 54 ASGTLSPDDLE 64
G LS +E
Sbjct: 76 NQGLLSSTPVE 86
>gi|227495444|ref|ZP_03925760.1| DNA-directed RNA polymerase [Actinomyces coleocanis DSM 15436]
gi|226830991|gb|EEH63374.1| DNA-directed RNA polymerase [Actinomyces coleocanis DSM 15436]
Length = 89
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQG-----------AKPTVDVGKDKNTV-VALREI 53
+++ +DKVD+++ LV+ A+ R R ++ P V V D + ALREI
Sbjct: 16 IDELLDKVDSKYALVVFAARRARQINSYNLQLESNMVQFVGPVVPVEADDKPLGTALREI 75
Query: 54 ASGTLSPDD 62
G L ++
Sbjct: 76 NEGLLVMEE 84
>gi|163790827|ref|ZP_02185252.1| DNA-directed RNA polymerase, omega subunit [Carnobacterium sp.
AT7]
gi|159873895|gb|EDP67974.1| DNA-directed RNA polymerase, omega subunit [Carnobacterium sp.
AT7]
Length = 71
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLS 59
M +++ ++K+++++ LV LAS R L +G+ P ++ KN AL EI +G L
Sbjct: 2 MLEPSIDSLLEKIESKYSLVTLASKRAHELDEGSMPMLEKYRSHKNVGRALEEINNGDLV 61
Query: 60 PDDLE 64
D +
Sbjct: 62 IDPIT 66
>gi|294790445|ref|ZP_06755603.1| DNA-directed RNA polymerase, omega subunit [Scardovia inopinata
F0304]
gi|294458342|gb|EFG26695.1| DNA-directed RNA polymerase, omega subunit [Scardovia inopinata
F0304]
Length = 96
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 13/68 (19%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQG-----------AKPTVDVGKDKNT-VVALREIASGTL 58
+R+ LV+ A+ R R ++ P V+ + +A REI G L
Sbjct: 22 KHAQSRYALVMFAAKRARQINSYFTQLNEGLLQNVGPLVEYKNQEKPLTIAFREINEGLL 81
Query: 59 SPDDLEED 66
+ L ED
Sbjct: 82 E-ETLGED 88
>gi|237785577|ref|YP_002906282.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
kroppenstedtii DSM 44385]
gi|237758489|gb|ACR17739.1| DNA-directed RNA polymerase, omega subunit [Corynebacterium
kroppenstedtii DSM 44385]
Length = 95
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQG-----------AKPTV-DVGKDKNTVVALREI 53
+++ + KV +++ LV+ A+ R R ++ P V +K +ALREI
Sbjct: 26 IDELLGKVSSKYALVIFAAKRARQINDYFKSVDDSVFEFVGPLVTPEPGEKPLSIALREI 85
Query: 54 ASGTLSPDD 62
G L +
Sbjct: 86 NDGLLDHTE 94
>gi|88856232|ref|ZP_01130892.1| DNA-directed RNA polymerase omega subunit [marine actinobacterium
PHSC20C1]
gi|88814551|gb|EAR24413.1| DNA-directed RNA polymerase omega subunit [marine actinobacterium
PHSC20C1]
Length = 86
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK------------PTVDVG-KDKNTVVALRE 52
+++ + KVD+++ LV+ AS R R ++ P VD +DK VAL E
Sbjct: 13 IDELLSKVDSKYQLVIFASKRARQINDYYADLHEGSLFDNVGPLVDSTIEDKPLSVALHE 72
Query: 53 IASGTLSPDDL 63
I L L
Sbjct: 73 INENKLELKRL 83
>gi|313672978|ref|YP_004051089.1| DNA-directed RNA polymerase, omega subunit [Calditerrivibrio
nitroreducens DSM 19672]
gi|312939734|gb|ADR18926.1| DNA-directed RNA polymerase, omega subunit [Calditerrivibrio
nitroreducens DSM 19672]
Length = 70
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 1 MARTTVEDCIDK--VDNRFLLVLLASHRTRHLSQGAKPTVDVGKD---KNTVVALREIAS 55
MA +E I V +RF LVL+AS R R L + T+ + K T +AL EI
Sbjct: 1 MAIVDIEKGIKNEFVKSRFRLVLMASQRARELINMKENTLPQQDNKYQKPTTIALAEIVE 60
Query: 56 GTLSPDDLEE 65
+ P + E
Sbjct: 61 RKIKPVLVNE 70
>gi|116512836|ref|YP_811743.1| DNA-directed RNA polymerase subunit omega [Lactococcus lactis
subsp. cremoris SK11]
gi|123320170|sp|Q02WP2|RPOZ_LACLS RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|116108490|gb|ABJ73630.1| DNA-directed RNA polymerase subunit omega [Lactococcus lactis
subsp. cremoris SK11]
Length = 117
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M +++ +D+VD+++ LV+L + R L +PT + K T+ AL EIA GT+
Sbjct: 2 MLEPSIDKLLDQVDSKYSLVVLEAKRAHELRDKERPTKEFKSVKRTLQALEEIADGTVKI 61
Query: 61 DDLEEDFIHSLQKHVEID 78
E +L + E++
Sbjct: 62 HPAPELKRETLVEKRELE 79
>gi|306832884|ref|ZP_07466017.1| DNA-directed RNA polymerase subunit omega [Streptococcus bovis
ATCC 700338]
gi|304424959|gb|EFM28092.1| DNA-directed RNA polymerase subunit omega [Streptococcus bovis
ATCC 700338]
Length = 114
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ L +L + R L GAKPT + K T+ AL EI SG +
Sbjct: 12 MLKPSIDTLLDKVPSKYSLCILQAKRAHELEAGAKPTQEFKSVKATLQALEEIESGNVVI 71
Query: 61 D 61
Sbjct: 72 H 72
>gi|160893325|ref|ZP_02074112.1| hypothetical protein CLOL250_00874 [Clostridium sp. L2-50]
gi|156865017|gb|EDO58448.1| hypothetical protein CLOL250_00874 [Clostridium sp. L2-50]
Length = 71
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
V +R+ +VL + R R + G +P V+ +K +A+ E+ SG +
Sbjct: 16 VQSRYSIVLATAKRAREIIAGQEPLVNTASNKPLSIAVDELYSGKVKI 63
>gi|253578850|ref|ZP_04856121.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849793|gb|EES77752.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 119
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 14 DNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTLSP 60
++R+ LVL AS R R + G+KP V+ K + VA+ E+ G +
Sbjct: 27 NSRYSLVLAASKRARQIIAGSKPMVEGAAGKKPLSVAIDELYKGKVKI 74
>gi|229918577|ref|YP_002887223.1| DNA-directed RNA polymerase, omega subunit [Exiguobacterium sp.
AT1b]
gi|259494498|sp|C4L5X2|RPOZ_EXISA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|229470006|gb|ACQ71778.1| DNA-directed RNA polymerase, omega subunit [Exiguobacterium sp.
AT1b]
Length = 69
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 8 DCIDK-VDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTLSP 60
D + + + +++ +V +A+ R R + G P V K V AL E+ SG +
Sbjct: 7 DALQRTIPSKYTIVTVAAKRARQIQDGKAPKVAEPKSYKPVGQALEELFSGDTTI 61
>gi|15673880|ref|NP_268055.1| DNA-directed RNA polymerase subunit omega [Lactococcus lactis
subsp. lactis Il1403]
gi|281492511|ref|YP_003354491.1| DNA-directed RNA polymerase subunit omega [Lactococcus lactis
subsp. lactis KF147]
gi|13959469|sp|Q9CEE4|RPOZ_LACLA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|12724933|gb|AAK05996.1|AE006419_6 unknown protein [Lactococcus lactis subsp. lactis Il1403]
gi|281376175|gb|ADA65666.1| DNA-directed RNA polymerase, omega chain [Lactococcus lactis
subsp. lactis KF147]
gi|326407451|gb|ADZ64522.1| DNA-directed RNA polymerase subunit omega [Lactococcus lactis
subsp. lactis CV56]
Length = 117
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTL-- 58
M +++ +D+VD+++ LV+L + R L +PT + KNT+ AL EIA GT+
Sbjct: 2 MLEPSIDKLLDQVDSKYSLVVLEAKRAHELRDKERPTKEFKAVKNTLRALEEIADGTVKI 61
Query: 59 --SPDDLEEDFIHS 70
SP+ E +
Sbjct: 62 HPSPELKRETLVEK 75
>gi|314987953|gb|EFT32044.1| DNA-directed RNA polymerase, omega subunit [Propionibacterium
acnes HL005PA2]
Length = 115
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREIASGT 57
++ VD+++ LVL A+ R R ++ P V+ + + +A+REI +G
Sbjct: 18 LEHVDSKYRLVLFAAKRARQINAYYSQLAEGLLENVGPLVETTTQEKPLSIAMREIQAGV 77
Query: 58 LSPDDLE 64
+ +++
Sbjct: 78 VEAHEMD 84
>gi|206889951|ref|YP_002248250.1| hyaluronan receptor rhamm [Thermodesulfovibrio yellowstonii DSM
11347]
gi|226703191|sp|B5YJ35|RPOZ_THEYD RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|206741889|gb|ACI20946.1| hyaluronan receptor rhamm [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 138
Score = 44.9 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 15/117 (12%)
Query: 12 KVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREI---------------ASG 56
K+++R+ L L+A+ R LS GA +D K T AL EI A
Sbjct: 21 KIESRYRLALIAAQRAAELSLGATAKIDKKGKKVTTTALLEILSNKIDYITGEEAVKAKE 80
Query: 57 TLSPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINN 113
+ D+++ + ++ E + + E + +EG+
Sbjct: 81 KIDQIDVKKLLEDKRKAIPDLSELEKDLKVYLHGKESAEKMLEDLFTEGESNSSNEQ 137
>gi|210612281|ref|ZP_03289229.1| hypothetical protein CLONEX_01430 [Clostridium nexile DSM 1787]
gi|210151655|gb|EEA82662.1| hypothetical protein CLONEX_01430 [Clostridium nexile DSM 1787]
Length = 71
Score = 44.9 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 7 EDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK-DKNTVVALREIASGTLSP 60
E V++R+ +VL S R R + G P V +K +A+ E+ +G +
Sbjct: 10 EGATKIVNSRYSIVLATSKRARQIIGGELPLVPTKHGEKPLSIAIDELNNGKIKI 64
>gi|119025558|ref|YP_909403.1| DNA-directed RNA polymerase subunit omega [Bifidobacterium
adolescentis ATCC 15703]
gi|166229348|sp|A1A0T8|RPOZ_BIFAA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|118765142|dbj|BAF39321.1| RNA polymerase omega subunit [Bifidobacterium adolescentis ATCC
15703]
Length = 94
Score = 44.9 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQG-----------AKPTVDVGKDKNTV-VALREI 53
++D ++ D+++ L + A+ R R ++ P V+ + + +A REI
Sbjct: 17 IDDLMEHADSKYALAIFAAKRARQINSYFTQLNEGLLQNVGPLVEYQNQEKPLSIAFREI 76
Query: 54 ASGTLSPDDLEED 66
SG L + L ED
Sbjct: 77 NSGLLE-ETLGED 88
>gi|296394692|ref|YP_003659576.1| DNA-directed RNA polymerase subunit omega [Segniliparus rotundus
DSM 44985]
gi|296181839|gb|ADG98745.1| DNA-directed RNA polymerase, omega subunit [Segniliparus rotundus
DSM 44985]
Length = 89
Score = 44.9 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ ++ V +++ LV+ + R R ++ P V+ G ++K +ALREI
Sbjct: 18 IDELLEHVSSKYALVIYGAKRARQINDYYTQLGEGLFDYVGPLVEPGLQEKPLAIALREI 77
Query: 54 ASGTLSPDD 62
G L ++
Sbjct: 78 HEGLLEHNE 86
>gi|322378580|ref|ZP_08053020.1| DNA-directed RNA polymerase subunit omega [Helicobacter suis HS1]
gi|322380905|ref|ZP_08054983.1| DNA-directed RNA polymerase subunit omega [Helicobacter suis HS5]
gi|321146673|gb|EFX41495.1| DNA-directed RNA polymerase subunit omega [Helicobacter suis HS5]
gi|321148988|gb|EFX43448.1| DNA-directed RNA polymerase subunit omega [Helicobacter suis HS1]
Length = 71
Score = 44.9 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 6 VEDCIDKVD-NRFLLVLLASHRTRHLSQGAKPTV--DVGKDKNTVVALREIASGTLSPDD 62
V +++V+ +R++L L R R L G +P V D+ K T +A+ EIA G +S D
Sbjct: 7 VAKALERVNGDRYILSNLIFSRVRQLGAGTRPLVAMDIKTHKPTDIAILEIAEGKISLDR 66
Query: 63 LEED 66
++E
Sbjct: 67 IDER 70
>gi|317052569|ref|YP_004113685.1| DNA-directed RNA polymerase subunit omega [Desulfurispirillum
indicum S5]
gi|316947653|gb|ADU67129.1| DNA-directed RNA polymerase, omega subunit [Desulfurispirillum
indicum S5]
Length = 74
Score = 44.9 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 1 MARTTVEDCIDK---VDNRFLLVLLASHRTRHLS--QGAKPTVDVGKDKNTVVALREIAS 55
MA +E C+ ++NRF+L +A+ R L+ + D K AL EI+
Sbjct: 1 MAFINIEKCLKDSSFLNNRFVLTSVAAKRANDLALVRDHPMISDSSYTKFPTQALEEISL 60
Query: 56 GTLSPDDLE 64
G L+ + +E
Sbjct: 61 GLLNAERVE 69
>gi|148284515|ref|YP_001248605.1| hypothetical protein OTBS_0920 [Orientia tsutsugamushi str.
Boryong]
gi|146739954|emb|CAM79986.1| hypothetical protein OTBS_0920 [Orientia tsutsugamushi str.
Boryong]
Length = 132
Score = 44.9 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKN--TVVALREIASGTLSPDDLEEDFI 68
V NRF LV L++H L+ G+ K + + AL I + ++ +L E I
Sbjct: 14 QHVANRFELVSLSAHLVIELNSGSNIMASHAKKDSNLIITALNGILTEEVNIPELREKLI 73
Query: 69 HSLQKHV 75
Q
Sbjct: 74 LKHQTQS 80
>gi|300173690|ref|YP_003772856.1| DNA-directed RNA polymerase subunit omega [Leuconostoc
gasicomitatum LMG 18811]
gi|299888069|emb|CBL92037.1| DNA-directed RNA polymerase omega chain [Leuconostoc
gasicomitatum LMG 18811]
Length = 70
Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK-DKNTVVALREIASGTLSPDDLE 64
V+ ++KVD+R+ L+ L + R R L G T + +K+ AL EI +G + D
Sbjct: 7 VDKLLEKVDSRYKLIALGAKRARELDAGLPATQETFNSNKSVGQALEEIENGDVIIDPDM 66
Query: 65 EDFI 68
ED +
Sbjct: 67 EDQV 70
>gi|225378029|ref|ZP_03755250.1| hypothetical protein ROSEINA2194_03689 [Roseburia inulinivorans DSM
16841]
gi|225210030|gb|EEG92384.1| hypothetical protein ROSEINA2194_03689 [Roseburia inulinivorans DSM
16841]
Length = 116
Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVGK-DKNTVVALREIASGTLSP 60
V++R+ LV+ A+ R R + G +P D K +A+ E+ G +
Sbjct: 60 VNSRYSLVIAAAKRARQIIAGDEPMADKITCPKPLSIAVEELYEGKVKI 108
>gi|269218519|ref|ZP_06162373.1| DNA-directed RNA polymerase, omega subunit [Actinomyces sp. oral
taxon 848 str. F0332]
gi|269211630|gb|EEZ77970.1| DNA-directed RNA polymerase, omega subunit [Actinomyces sp. oral
taxon 848 str. F0332]
Length = 89
Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 14/67 (20%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-------------PTVD-VGKDKNTVVALR 51
++D ++KVD+++ L + A+ R R ++ + P V+ +DK +AL
Sbjct: 16 IDDLLEKVDSKYALSVYAAQRARQINSYRQEMTRGDGNITTFGPLVEASPEDKPLSIALE 75
Query: 52 EIASGTL 58
EI +
Sbjct: 76 EIREDKV 82
>gi|153810775|ref|ZP_01963443.1| hypothetical protein RUMOBE_01159 [Ruminococcus obeum ATCC 29174]
gi|149833171|gb|EDM88253.1| hypothetical protein RUMOBE_01159 [Ruminococcus obeum ATCC 29174]
Length = 106
Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 14 DNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTLSPDDLEEDFIHSLQ 72
++R+ LVL S R R L GA+P V K + +A+ E+ G + E + +
Sbjct: 27 NSRYSLVLATSKRARQLIAGAEPLVPNTAGKKPLSIAIDELYKGEVKIVAASEAEEDTTK 86
Query: 73 KHVEIDEPDSPTENSDFSWH 92
+E E + +
Sbjct: 87 TQTVAEETVENIEETTENNQ 106
>gi|240172960|ref|ZP_04751618.1| DNA-directed RNA polymerase subunit omega [Mycobacterium kansasii
ATCC 12478]
Length = 109
Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ +D+V +++ LV+ A+ R R ++ P V+ G ++K +ALREI
Sbjct: 39 IDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREI 98
Query: 54 ASGTL 58
+ L
Sbjct: 99 HADLL 103
>gi|160881008|ref|YP_001559976.1| DNA-directed RNA polymerase, omega subunit [Clostridium
phytofermentans ISDg]
gi|189043978|sp|A9KPG3|RPOZ_CLOPH RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|160429674|gb|ABX43237.1| DNA-directed RNA polymerase, omega subunit [Clostridium
phytofermentans ISDg]
Length = 82
Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
V++R+ +VL + R R + GA+P + +K +A+ E+ +
Sbjct: 25 VNSRYSIVLATAKRARQIIDGAEPLTESSCNKPLSIAVEELYKSKVKI 72
>gi|15608529|ref|NP_215906.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
tuberculosis H37Rv]
gi|31792584|ref|NP_855077.1| DNA-directed RNA polymerase subunit omega [Mycobacterium bovis
AF2122/97]
gi|121637320|ref|YP_977543.1| DNA-directed RNA polymerase subunit omega [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|148661181|ref|YP_001282704.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
tuberculosis H37Ra]
gi|148822610|ref|YP_001287364.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
tuberculosis F11]
gi|167966854|ref|ZP_02549131.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
tuberculosis H37Ra]
gi|215403238|ref|ZP_03415419.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
tuberculosis 02_1987]
gi|215411035|ref|ZP_03419843.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
tuberculosis 94_M4241A]
gi|215426720|ref|ZP_03424639.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
tuberculosis T92]
gi|215430276|ref|ZP_03428195.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
tuberculosis EAS054]
gi|215445574|ref|ZP_03432326.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
tuberculosis T85]
gi|218753097|ref|ZP_03531893.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
tuberculosis GM 1503]
gi|219557293|ref|ZP_03536369.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
tuberculosis T17]
gi|224989795|ref|YP_002644482.1| DNA-directed RNA polymerase subunit omega [Mycobacterium bovis BCG
str. Tokyo 172]
gi|253799561|ref|YP_003032562.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis KZN 1435]
gi|254231637|ref|ZP_04924964.1| DNA-directed RNA polymerase (omega chain) rpoZ [Mycobacterium
tuberculosis C]
gi|254364277|ref|ZP_04980323.1| DNA-directed RNA polymerase (omega chain) rpoZ [Mycobacterium
tuberculosis str. Haarlem]
gi|254550403|ref|ZP_05140850.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
tuberculosis '98-R604 INH-RIF-EM']
gi|260186327|ref|ZP_05763801.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
tuberculosis CPHL_A]
gi|260200445|ref|ZP_05767936.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
tuberculosis T46]
gi|260204651|ref|ZP_05772142.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
tuberculosis K85]
gi|289442834|ref|ZP_06432578.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis T46]
gi|289446985|ref|ZP_06436729.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis CPHL_A]
gi|289554820|ref|ZP_06444030.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis KZN 605]
gi|289569406|ref|ZP_06449633.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis T17]
gi|289574056|ref|ZP_06454283.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis K85]
gi|289745142|ref|ZP_06504520.1| DNA-directed RNA polymerase omega subunit rpoZ [Mycobacterium
tuberculosis 02_1987]
gi|289749945|ref|ZP_06509323.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis T92]
gi|289753470|ref|ZP_06512848.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
tuberculosis EAS054]
gi|289757496|ref|ZP_06516874.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
tuberculosis T85]
gi|289761548|ref|ZP_06520926.1| DNA-directed RNA polymerase (omega chain) rpoZ [Mycobacterium
tuberculosis GM 1503]
gi|294994951|ref|ZP_06800642.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
tuberculosis 210]
gi|297633944|ref|ZP_06951724.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
tuberculosis KZN 4207]
gi|297730933|ref|ZP_06960051.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
tuberculosis KZN R506]
gi|298524896|ref|ZP_07012305.1| DNA-directed RNA polymerase (omega chain) rpoZ [Mycobacterium
tuberculosis 94_M4241A]
gi|306775572|ref|ZP_07413909.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis SUMu001]
gi|306780721|ref|ZP_07419058.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis SUMu002]
gi|306784120|ref|ZP_07422442.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis SUMu003]
gi|306788489|ref|ZP_07426811.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis SUMu004]
gi|306792813|ref|ZP_07431115.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis SUMu005]
gi|306797213|ref|ZP_07435515.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis SUMu006]
gi|306803093|ref|ZP_07439761.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis SUMu008]
gi|306807289|ref|ZP_07443957.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis SUMu007]
gi|306967488|ref|ZP_07480149.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis SUMu009]
gi|306971680|ref|ZP_07484341.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis SUMu010]
gi|307079392|ref|ZP_07488562.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis SUMu011]
gi|307083959|ref|ZP_07493072.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis SUMu012]
gi|313658266|ref|ZP_07815146.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
tuberculosis KZN V2475]
gi|54039285|sp|P66722|RPOZ_MYCBO RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|54042194|sp|P66721|RPOZ_MYCTU RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|166230332|sp|A1KIH9|RPOZ_MYCBP RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|166230334|sp|A5U292|RPOZ_MYCTA RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|254809251|sp|C1AN35|RPOZ_MYCBT RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|1542898|emb|CAB02173.1| PROBABLE DNA-DIRECTED RNA POLYMERASE (OMEGA CHAIN) RPOZ
(TRANSCRIPTASE OMEGA CHAIN) (RNA POLYMERASE OMEGA
SUBUNIT) [Mycobacterium tuberculosis H37Rv]
gi|31618173|emb|CAD94286.1| PROBABLE DNA-DIRECTED RNA POLYMERASE (OMEGA CHAIN) RPOZ
(TRANSCRIPTASE OMEGA CHAIN) (RNA POLYMERASE OMEGA
SUBUNIT) [Mycobacterium bovis AF2122/97]
gi|121492967|emb|CAL71438.1| Probable dna-directed RNA polymerase (omega chain) rpoZ
[Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|124600696|gb|EAY59706.1| DNA-directed RNA polymerase (omega chain) rpoZ [Mycobacterium
tuberculosis C]
gi|134149791|gb|EBA41836.1| DNA-directed RNA polymerase (omega chain) rpoZ [Mycobacterium
tuberculosis str. Haarlem]
gi|148505333|gb|ABQ73142.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
tuberculosis H37Ra]
gi|148721137|gb|ABR05762.1| DNA-directed RNA polymerase omega subunit rpoZ [Mycobacterium
tuberculosis F11]
gi|224772908|dbj|BAH25714.1| DNA-directed RNA polymerase subunit omega [Mycobacterium bovis BCG
str. Tokyo 172]
gi|253321064|gb|ACT25667.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis KZN 1435]
gi|289415753|gb|EFD12993.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis T46]
gi|289419943|gb|EFD17144.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis CPHL_A]
gi|289439452|gb|EFD21945.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis KZN 605]
gi|289538487|gb|EFD43065.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis K85]
gi|289543160|gb|EFD46808.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis T17]
gi|289685670|gb|EFD53158.1| DNA-directed RNA polymerase omega subunit rpoZ [Mycobacterium
tuberculosis 02_1987]
gi|289690532|gb|EFD57961.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis T92]
gi|289694057|gb|EFD61486.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
tuberculosis EAS054]
gi|289709054|gb|EFD73070.1| DNA-directed RNA polymerase (omega chain) rpoZ [Mycobacterium
tuberculosis GM 1503]
gi|289713060|gb|EFD77072.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
tuberculosis T85]
gi|298494690|gb|EFI29984.1| DNA-directed RNA polymerase (omega chain) rpoZ [Mycobacterium
tuberculosis 94_M4241A]
gi|308215951|gb|EFO75350.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis SUMu001]
gi|308326433|gb|EFP15284.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis SUMu002]
gi|308331119|gb|EFP19970.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis SUMu003]
gi|308334930|gb|EFP23781.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis SUMu004]
gi|308338740|gb|EFP27591.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis SUMu005]
gi|308342472|gb|EFP31323.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis SUMu006]
gi|308346314|gb|EFP35165.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis SUMu007]
gi|308350241|gb|EFP39092.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis SUMu008]
gi|308354884|gb|EFP43735.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis SUMu009]
gi|308358825|gb|EFP47676.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis SUMu010]
gi|308362747|gb|EFP51598.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis SUMu011]
gi|308366392|gb|EFP55243.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis SUMu012]
gi|323720109|gb|EGB29214.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis CDC1551A]
gi|326903012|gb|EGE49945.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis W-148]
gi|328459309|gb|AEB04732.1| DNA-directed RNA polymerase subunit omega rpoZ [Mycobacterium
tuberculosis KZN 4207]
Length = 110
Score = 44.5 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ +D+V +++ LV+ A+ R R ++ P V+ G ++K +ALREI
Sbjct: 40 IDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREI 99
Query: 54 ASGTL 58
+ L
Sbjct: 100 HADLL 104
>gi|332523842|ref|ZP_08400094.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
porcinus str. Jelinkova 176]
gi|332315106|gb|EGJ28091.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
porcinus str. Jelinkova 176]
Length = 105
Score = 44.5 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GAK T K+T+ AL EI SG +
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILQAKRAHELEAGAKATQSFKSVKSTLQALEEIESGNVVI 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|227496165|ref|ZP_03926471.1| DNA-directed RNA polymerase subunit omega [Actinomyces
urogenitalis DSM 15434]
gi|226834296|gb|EEH66679.1| DNA-directed RNA polymerase subunit omega [Actinomyces
urogenitalis DSM 15434]
Length = 138
Score = 44.5 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
++D ++KVD+++ LV+ A+ R R ++ + P V+V ++ + +ALREI
Sbjct: 16 IDDLLEKVDSKYGLVVEAAKRARQINSYTQQLEDNQLEYFGPLVEVAPEEKPLGIALREI 75
Query: 54 ASGTLSP 60
L
Sbjct: 76 VEDKLEV 82
>gi|253575773|ref|ZP_04853108.1| DNA-directed RNA polymerase, omega subunit [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251844816|gb|EES72829.1| DNA-directed RNA polymerase, omega subunit [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 78
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKP-TVDVGKDKNTVVALREIASG--TLSPDDLEED 66
+ KV +++ LV+ AS R R L +G K K +AL EI L DD+ +
Sbjct: 14 LGKVGSKYSLVVAASRRARQLREGEKSELKQPKSHKPVGIALEEIYGDYIKLKQDDVVSE 73
Query: 67 FIHS 70
I+
Sbjct: 74 EINK 77
>gi|258654283|ref|YP_003203439.1| DNA-directed RNA polymerase subunit omega [Nakamurella
multipartita DSM 44233]
gi|258557508|gb|ACV80450.1| DNA-directed RNA polymerase, omega subunit [Nakamurella
multipartita DSM 44233]
Length = 95
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 12/69 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDV-GKDKNTVVALREI 53
+++ + + +++ L + A+ R R ++ P V+ K+K +ALREI
Sbjct: 25 IDELLTRTSSKYGLSIYAAKRARQINDYYAQLGEGLLEYVGPLVEPLPKEKPLSIALREI 84
Query: 54 ASGTLSPDD 62
+G L+ +
Sbjct: 85 NAGLLTHTE 93
>gi|289450824|ref|YP_003475730.1| DNA-directed RNA polymerase subunit omega [Clostridiales genomosp.
BVAB3 str. UPII9-5]
gi|289185371|gb|ADC91796.1| DNA-directed RNA polymerase, omega subunit [Clostridiales genomosp.
BVAB3 str. UPII9-5]
Length = 167
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 5/120 (4%)
Query: 7 EDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGT-LSPDDLEE 65
E + +V+NR+ L + + RTR L GA+P + +A E+A+GT ++ D+ E
Sbjct: 8 EKLLPRVENRYTLAIAIAKRTRQLVAGAQPMAESDSPSLVTMACEELAAGTVVAVPDIVE 67
Query: 66 DFIHSLQKHVE---IDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNIVTPDKRDD 122
+I+ L+ VE +E + N D S A M D + D
Sbjct: 68 PYIN-LRPDVEAALQNEREQAEANDDMSTADVFAADEQSMDGEDDNPIEATATRHSETAD 126
>gi|284044664|ref|YP_003395004.1| DNA-directed RNA polymerase subunit omega [Conexibacter woesei
DSM 14684]
gi|283948885|gb|ADB51629.1| DNA-directed RNA polymerase, omega subunit [Conexibacter woesei
DSM 14684]
Length = 86
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 12/64 (18%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGA------------KPTVDVGKDKNTVVALREIASGT 57
+ VD+ + V++A+ R R ++ P V+ +AL E+ASG
Sbjct: 21 LAHVDSDYASVVVAAKRARQINSYYHNLGEGTFDEFPPPMVETRSKNYLTIALEEVASGK 80
Query: 58 LSPD 61
+
Sbjct: 81 IKYH 84
>gi|160939107|ref|ZP_02086458.1| hypothetical protein CLOBOL_04001 [Clostridium bolteae ATCC
BAA-613]
gi|158438070|gb|EDP15830.1| hypothetical protein CLOBOL_04001 [Clostridium bolteae ATCC
BAA-613]
Length = 87
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTLSP 60
V +R+ +V+ AS R R L G P V K + +A+ E+ +
Sbjct: 25 VQSRYSIVIAASRRARQLIAGEDPMVAGAAGKKPLSIAIDELYHQKVKI 73
>gi|210134978|ref|YP_002301417.1| DNA-directed RNA polymerase subunit omega [Helicobacter pylori
P12]
gi|226703141|sp|B6JM09|RPOZ_HELP2 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|210132946|gb|ACJ07937.1| RNA polymerase omega chain [Helicobacter pylori P12]
Length = 74
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 6 VEDCIDKVDN-RFLLVLLASHRTRHLSQGAKPTV--DVGKDKNTVVALREIASGTLSPDD 62
V + + N R+ L L R + L+ GAK V D + K +A+REIA G + D
Sbjct: 10 VAQALKNIGNDRYKLDNLVFARVKQLNAGAKTLVNMDPKRHKLVDIAIREIAEGKIDIDR 69
Query: 63 LEED 66
++E
Sbjct: 70 IDER 73
>gi|188578259|ref|YP_001915188.1| DNA-directed RNA polymerase subunit omega [Xanthomonas oryzae pv.
oryzae PXO99A]
gi|188522711|gb|ACD60656.1| DNA-directed RNA polymerase omega chain [Xanthomonas oryzae pv.
oryzae PXO99A]
Length = 79
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 21 LLASHRTRHLSQGAKPTVDV--GKDKNTVVALREIASGTLSPDDLEE 65
++AS R R L+ G +P ++ DK TV+ALREIA+ + ++E
Sbjct: 1 MMASKRARQLANGVQPLIENAAASDKPTVMALREIAARRIDNALIDE 47
>gi|118475016|ref|YP_892371.1| DNA-directed RNA polymerase subunit omega [Campylobacter fetus
subsp. fetus 82-40]
gi|118414242|gb|ABK82662.1| DNA-directed RNA polymerase, omega subunit [Campylobacter fetus
subsp. fetus 82-40]
Length = 73
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 14 DNRFLLVLLASHRTRHLSQGAKPTV--DVGKDKNTVVALREIASGTLSPDDLEED 66
++R+ L LL + R L++GA P V + K K T +AL EI+ G + + E
Sbjct: 17 NDRYKLALLVAKRAEMLAEGAAPLVKINAAKMKFTDIALLEISEGKVLLEAFVES 71
>gi|77404943|ref|ZP_00782044.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
agalactiae H36B]
gi|77176382|gb|EAO79150.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
agalactiae H36B]
Length = 91
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 43/88 (48%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L G K T D K+T+ AL EI SG +
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILQAKRAHELEAGEKATQDFKSVKSTLRALEEIESGNVVI 61
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSD 88
S++ +E + E+ +
Sbjct: 62 HPDPSAKRASVRARIEAERLAKEKEDGE 89
>gi|302386328|ref|YP_003822150.1| DNA-directed RNA polymerase, omega subunit [Clostridium
saccharolyticum WM1]
gi|302196956|gb|ADL04527.1| DNA-directed RNA polymerase, omega subunit [Clostridium
saccharolyticum WM1]
Length = 84
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
V +R+ +V+ A+ R R + G++P + K VA+ E+ G +
Sbjct: 25 VQSRYSIVIAAAKRARQIIGGSEPEILGAGKKPLSVAVEELYEGKVKI 72
>gi|225389075|ref|ZP_03758799.1| hypothetical protein CLOSTASPAR_02821 [Clostridium asparagiforme
DSM 15981]
gi|225044864|gb|EEG55110.1| hypothetical protein CLOSTASPAR_02821 [Clostridium asparagiforme
DSM 15981]
Length = 86
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTLSPDDLEEDFIHSL 71
V +R+ +V+ AS R R L G +P V K + +A+ E+ + EE+
Sbjct: 25 VQSRYSIVVAASKRARQLIDGEEPLVAGSNGKKPLSIAIDELYHQKVKILPEEEEVSEDD 84
Query: 72 QK 73
QK
Sbjct: 85 QK 86
>gi|291300644|ref|YP_003511922.1| DNA-directed RNA polymerase subunit omega [Stackebrandtia
nassauensis DSM 44728]
gi|290569864|gb|ADD42829.1| DNA-directed RNA polymerase, omega subunit [Stackebrandtia
nassauensis DSM 44728]
Length = 106
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVD-VGKDKNTVVALREI 53
++D ++K +++ LV+ + R R ++ P V+ ++K+ +ALREI
Sbjct: 16 IDDLLEKTHSKYQLVIYGAKRARQINAYYSQLGEGLLEYVGPLVETTPQEKSLSIALREI 75
Query: 54 ASGTLSPDDLEE 65
L + L +
Sbjct: 76 DQDLLITEALPD 87
>gi|116670805|ref|YP_831738.1| DNA-directed RNA polymerase subunit omega [Arthrobacter sp. FB24]
gi|116610914|gb|ABK03638.1| DNA-directed RNA polymerase, omega subunit [Arthrobacter sp.
FB24]
Length = 86
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ + D+++ LV+ + R R ++ P VD +K+ +ALREI
Sbjct: 13 IDELLKAADSKYGLVIFGAKRARQINAYYAQLHEGLFEYVGPLVDTKLNEKSLSIALREI 72
Query: 54 ASGTL 58
G L
Sbjct: 73 NEGKL 77
>gi|325288875|ref|YP_004265056.1| DNA-directed RNA polymerase subunit omega [Syntrophobotulus
glycolicus DSM 8271]
gi|324964276|gb|ADY55055.1| DNA-directed RNA polymerase subunit omega [Syntrophobotulus
glycolicus DSM 8271]
Length = 67
Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEE 65
+ KVD+++ LV+ A+ R R + ++ ++K VAL EIA G +S + + E
Sbjct: 10 MTKVDSKYTLVVTAAKRARVVMDKFDAE-ELDENKPVSVALAEIAGGKISYELVRE 64
>gi|313890026|ref|ZP_07823662.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
pseudoporcinus SPIN 20026]
gi|313121617|gb|EFR44720.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
pseudoporcinus SPIN 20026]
Length = 105
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L GAK T K+T+ AL EI SG +
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILQAKRAHELEAGAKATQSFKSVKSTLRALEEIESGNVVI 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|15827198|ref|NP_301461.1| DNA-directed RNA polymerase subunit omega [Mycobacterium leprae TN]
gi|221229676|ref|YP_002503092.1| DNA-directed RNA polymerase subunit omega [Mycobacterium leprae
Br4923]
gi|13959467|sp|Q9CCQ6|RPOZ_MYCLE RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|254809252|sp|B8ZUM0|RPOZ_MYCLB RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|13092746|emb|CAC30050.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219932783|emb|CAR70635.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length = 110
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ +D+V +++ LV+ A+ R R ++ P V+ G ++K +A+REI
Sbjct: 40 IDELLDRVSSKYALVIYAAKRARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREI 99
Query: 54 ASGTL 58
+ L
Sbjct: 100 HADLL 104
>gi|125624925|ref|YP_001033408.1| DNA-directed RNA polymerase subunit omega [Lactococcus lactis
subsp. cremoris MG1363]
gi|166230326|sp|A2RN34|RPOZ_LACLM RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|124493733|emb|CAL98721.1| DNA-directed RNA polymerase subunit omega [Lactococcus lactis
subsp. cremoris MG1363]
gi|300071723|gb|ADJ61123.1| DNA-directed RNA polymerase subunit omega [Lactococcus lactis
subsp. cremoris NZ9000]
Length = 117
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M +++ +D+VD+++ LV+L + R L +PT + K T+ AL EIA GT+
Sbjct: 2 MLEPSIDKLLDQVDSKYSLVVLEAKRAHELRDKERPTKEFKAVKRTLQALEEIADGTVKI 61
Query: 61 DDLEEDFIHSLQKHVEID 78
E +L + E++
Sbjct: 62 HPAPELKRETLVEKRELE 79
>gi|22536497|ref|NP_687348.1| DNA-directed RNA polymerase subunit omega [Streptococcus
agalactiae 2603V/R]
gi|76787713|ref|YP_329036.1| DNA-directed RNA polymerase subunit omega [Streptococcus
agalactiae A909]
gi|76797816|ref|ZP_00780081.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
agalactiae 18RS21]
gi|77408115|ref|ZP_00784862.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
agalactiae COH1]
gi|77410651|ref|ZP_00787011.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
agalactiae CJB111]
gi|77413330|ref|ZP_00789525.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
agalactiae 515]
gi|109914412|sp|Q3K367|RPOZ_STRA1 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|22533328|gb|AAM99220.1|AE014205_21 DNA-directed RNA polymerase, omega subunit, putative
[Streptococcus agalactiae 2603V/R]
gi|76562770|gb|ABA45354.1| DNA-directed RNA polymerase omega subunit [Streptococcus
agalactiae A909]
gi|76586830|gb|EAO63323.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
agalactiae 18RS21]
gi|77160644|gb|EAO71760.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
agalactiae 515]
gi|77163366|gb|EAO74317.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
agalactiae CJB111]
gi|77173299|gb|EAO76421.1| DNA-directed RNA polymerase, omega subunit [Streptococcus
agalactiae COH1]
gi|319744304|gb|EFV96668.1| DNA-directed RNA polymerase subunit omega [Streptococcus
agalactiae ATCC 13813]
Length = 104
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L G K T D K+T+ AL EI SG +
Sbjct: 2 MLKPSIDTLLDKVPSKYSLVILQAKRAHELEAGEKATQDFKSVKSTLRALEEIESGNVVI 61
Query: 61 D 61
Sbjct: 62 H 62
>gi|325660992|ref|ZP_08149619.1| DNA-directed RNA polymerase subunit omega [Lachnospiraceae
bacterium 4_1_37FAA]
gi|331085299|ref|ZP_08334385.1| DNA-directed RNA polymerase subunit omega [Lachnospiraceae
bacterium 9_1_43BFAA]
gi|325472499|gb|EGC75710.1| DNA-directed RNA polymerase subunit omega [Lachnospiraceae
bacterium 4_1_37FAA]
gi|330408082|gb|EGG87572.1| DNA-directed RNA polymerase subunit omega [Lachnospiraceae
bacterium 9_1_43BFAA]
Length = 81
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 7 EDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV-DVGKDKNTVVALREIASGTLSP 60
E V++R+ +VL + R R + G P V +K +A+ E+ G +
Sbjct: 19 EGATKIVNSRYSIVLATAKRARQIIGGEMPLVRAKDGEKPLSIAIDELNKGKIKI 73
>gi|332670482|ref|YP_004453490.1| DNA-directed RNA polymerase subunit omega [Cellulomonas fimi ATCC
484]
gi|332339520|gb|AEE46103.1| DNA-directed RNA polymerase, omega subunit [Cellulomonas fimi
ATCC 484]
Length = 87
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREIASGT 57
+++ D+++ LVL ++ R R ++ P VD ++K +A+REI +G
Sbjct: 20 LERADSKYALVLYSAQRARQINAYYSQLNEGLLEYVGPLVDTRPQEKPLSIAMREIDAGL 79
Query: 58 LSPDDLE 64
L+ + E
Sbjct: 80 LTSEATE 86
>gi|239623773|ref|ZP_04666804.1| DNA-directed RNA polymerase [Clostridiales bacterium 1_7_47_FAA]
gi|239521804|gb|EEQ61670.1| DNA-directed RNA polymerase [Clostridiales bacterium 1_7_47FAA]
Length = 89
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTLSP 60
V +R+ +V+ AS R R + G P V K + +A+ E+ +
Sbjct: 25 VQSRYSIVIAASRRARQIIGGEDPMVSGAAGKKPLSIAIDELYHQKVKI 73
>gi|25010376|ref|NP_734771.1| DNA-directed RNA polymerase subunit omega [Streptococcus
agalactiae NEM316]
gi|54039289|sp|P66729|RPOZ_STRA5 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|54042197|sp|P66728|RPOZ_STRA3 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|23094728|emb|CAD45947.1| unknown [Streptococcus agalactiae NEM316]
Length = 103
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M + +++ +DKV +++ LV+L + R L G K T D K+T+ AL EI SG +
Sbjct: 1 MLKPSIDTLLDKVPSKYSLVILQAKRAHELEAGEKATQDFKSVKSTLRALEEIESGNVVI 60
Query: 61 D 61
Sbjct: 61 H 61
>gi|330894184|gb|EGH26845.1| hypothetical protein PSYMO_37372 [Pseudomonas syringae pv. mori
str. 301020]
Length = 34
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 13/17 (76%), Positives = 15/17 (88%)
Query: 1 MARTTVEDCIDKVDNRF 17
MAR TVEDC++ VDNRF
Sbjct: 18 MARVTVEDCLEHVDNRF 34
>gi|50954781|ref|YP_062069.1| DNA-directed RNA polymerase subunit omega [Leifsonia xyli subsp.
xyli str. CTCB07]
gi|71649395|sp|Q6AF81|RPOZ_LEIXX RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|50951263|gb|AAT88964.1| DNA-directed RNA polymerase, omega subunit [Leifsonia xyli subsp.
xyli str. CTCB07]
Length = 87
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 13/71 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK------------PTVDVG-KDKNTVVALRE 52
++D + KV++++ LV+ AS R R ++ P VD DK VA+ E
Sbjct: 13 IDDLLSKVESKYALVIFASKRARQINDYYADLHEGSLFDNVGPLVDSSVDDKPLSVAMHE 72
Query: 53 IASGTLSPDDL 63
I L +
Sbjct: 73 INEDRLVLKPI 83
>gi|226324717|ref|ZP_03800235.1| hypothetical protein COPCOM_02503 [Coprococcus comes ATCC 27758]
gi|225207165|gb|EEG89519.1| hypothetical protein COPCOM_02503 [Coprococcus comes ATCC 27758]
Length = 71
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 7 EDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSP 60
E V++R+ +VL + R R + G P V +K +A+ E+ SG +
Sbjct: 10 EGATKIVNSRYSIVLATAKRARQIIDGEMPLVPVKDGEKPLSIAIDELNSGKIKI 64
>gi|261884582|ref|ZP_06008621.1| DNA-directed RNA polymerase subunit omega [Campylobacter fetus
subsp. venerealis str. Azul-94]
Length = 73
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 14 DNRFLLVLLASHRTRHLSQGAKPTVD--VGKDKNTVVALREIASGTLSPDDLEED 66
++R+ L LL + R L++GA P V K K T +AL EI+ G + + E
Sbjct: 17 NDRYKLALLVAKRAEMLAEGAAPLVKITAAKMKFTDIALLEISEGKVLLEAFVES 71
>gi|183602597|ref|ZP_02963962.1| DNA-directed RNA polymerase subunit omega [Bifidobacterium
animalis subsp. lactis HN019]
gi|219683639|ref|YP_002470022.1| DNA-directed RNA polymerase subunit omega [Bifidobacterium
animalis subsp. lactis AD011]
gi|241190671|ref|YP_002968065.1| DNA-directed RNA polymerase subunit omega [Bifidobacterium
animalis subsp. lactis Bl-04]
gi|241196077|ref|YP_002969632.1| DNA-directed RNA polymerase subunit omega [Bifidobacterium
animalis subsp. lactis DSM 10140]
gi|254809280|sp|B8DTW7|RPOZ_BIFA0 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|183218238|gb|EDT88884.1| DNA-directed RNA polymerase subunit omega [Bifidobacterium
animalis subsp. lactis HN019]
gi|219621289|gb|ACL29446.1| DNA-directed RNA polymerase, omega subunit [Bifidobacterium
animalis subsp. lactis AD011]
gi|240249063|gb|ACS46003.1| DNA-directed RNA polymerase subunit omega [Bifidobacterium
animalis subsp. lactis Bl-04]
gi|240250631|gb|ACS47570.1| DNA-directed RNA polymerase subunit omega [Bifidobacterium
animalis subsp. lactis DSM 10140]
gi|295793660|gb|ADG33195.1| DNA-directed RNA polymerase subunit omega [Bifidobacterium
animalis subsp. lactis V9]
Length = 94
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 13/73 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQG-----------AKPTVDVGKDKNTV-VALREI 53
++D ++ D+++ L + A+ R R ++ P V+ + + +A REI
Sbjct: 17 IDDLMEHADSKYALAIFAAKRARQINSYFTQLNEGLLQNVGPLVEYKSQEKPLSIAFREI 76
Query: 54 ASGTLSPDDLEED 66
G L + L ED
Sbjct: 77 NEGLLE-ETLGED 88
>gi|118463858|ref|YP_882566.1| DNA-directed RNA polymerase subunit omega [Mycobacterium avium 104]
gi|254775830|ref|ZP_05217346.1| DNA-directed RNA polymerase subunit omega [Mycobacterium avium
subsp. avium ATCC 25291]
gi|166230331|sp|A0QI28|RPOZ_MYCA1 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|118165145|gb|ABK66042.1| DNA-directed RNA polymerase omega chain [Mycobacterium avium 104]
Length = 108
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ +D+V +++ LV+ A+ R R ++ P V+ G ++K +ALREI
Sbjct: 38 IDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREI 97
Query: 54 ASGTL 58
L
Sbjct: 98 HGDLL 102
>gi|41407222|ref|NP_960058.1| DNA-directed RNA polymerase subunit omega [Mycobacterium avium
subsp. paratuberculosis K-10]
gi|81571409|sp|Q741G7|RPOZ_MYCPA RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|41395573|gb|AAS03441.1| hypothetical protein MAP_1124 [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 108
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ +D+V +++ LV+ A+ R R ++ P V+ G ++K +ALREI
Sbjct: 38 IDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREI 97
Query: 54 ASGTL 58
L
Sbjct: 98 HGDLL 102
>gi|300781110|ref|ZP_07090964.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
genitalium ATCC 33030]
gi|300532817|gb|EFK53878.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
genitalium ATCC 33030]
Length = 96
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTV-DVGKDKNTVVALREI 53
+++ + KV +++ LV+ A+ R R ++ + P V +K +ALREI
Sbjct: 26 IDELLTKVSSKYALVIFAAKRARQINSYYQEQDEGVFEFIGPLVTPQQGEKPLSIALREI 85
Query: 54 ASGTLSPDD 62
+G L ++
Sbjct: 86 EAGLLEHEE 94
>gi|217032182|ref|ZP_03437681.1| hypothetical protein HPB128_186g48 [Helicobacter pylori B128]
gi|216946172|gb|EEC24781.1| hypothetical protein HPB128_186g48 [Helicobacter pylori B128]
Length = 84
Score = 43.7 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 6 VEDCIDKVDN-RFLLVLLASHRTRHLSQGAKPTV--DVGKDKNTVVALREIASGTLSPDD 62
V + + N R++L L R + L+ GAK V D + K +A+REIA G + D
Sbjct: 20 VAQALKNIGNDRYMLDNLVFARVKQLNAGAKTLVNMDPKRHKLVDIAIREIAEGKIDIDR 79
Query: 63 LEED 66
++E
Sbjct: 80 IDER 83
>gi|296117970|ref|ZP_06836553.1| DNA-directed RNA polymerase, omega subunit [Corynebacterium
ammoniagenes DSM 20306]
gi|295969201|gb|EFG82443.1| DNA-directed RNA polymerase, omega subunit [Corynebacterium
ammoniagenes DSM 20306]
Length = 101
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTV-DVGKDKNTVVALREI 53
+++ ++ V +++ LV+ A+ R R ++ + P V +K +ALREI
Sbjct: 29 IDELLETVSSKYALVIFAAKRARQINSYYQEQDEGVFEFVGPLVTPEPGEKPLSIALREI 88
Query: 54 ASGTLSPDD 62
+G L ++
Sbjct: 89 EAGLLEHEE 97
>gi|15645395|ref|NP_207569.1| DNA-directed RNA polymerase subunit omega [Helicobacter pylori
26695]
gi|208434688|ref|YP_002266354.1| RNA polymerase omega chain, transcriptional activator
[Helicobacter pylori G27]
gi|2313905|gb|AAD07826.1| predicted coding region HP0776 [Helicobacter pylori 26695]
gi|208432617|gb|ACI27488.1| RNA polymerase omega chain, transcriptional activator
[Helicobacter pylori G27]
Length = 84
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 6 VEDCIDKVDN-RFLLVLLASHRTRHLSQGAKPTV--DVGKDKNTVVALREIASGTLSPDD 62
V + + N R++L L R + L+ GAK V D + K +A+REIA G + D
Sbjct: 20 VAQALKNIGNDRYMLDNLVFARVKQLNAGAKTLVNMDPKRHKLVDIAIREIAEGKIDIDR 79
Query: 63 LEED 66
++E
Sbjct: 80 IDER 83
>gi|315226018|ref|ZP_07867806.1| DNA-directed RNA polymerase subunit omega [Parascardovia
denticolens DSM 10105]
gi|315120150|gb|EFT83282.1| DNA-directed RNA polymerase subunit omega [Parascardovia
denticolens DSM 10105]
Length = 107
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 13/68 (19%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQG-----------AKPTVDVGKDKNT-VVALREIASGTL 58
+R+ L + A+ R R ++ P V+ + +A REI G L
Sbjct: 33 KHAQSRYALAMFAAKRARQINSYFTQLNEGLLQNVGPLVEYKNQEKPLTIAFREINEGLL 92
Query: 59 SPDDLEED 66
+ L ED
Sbjct: 93 E-ETLGED 99
>gi|220912749|ref|YP_002488058.1| DNA-directed RNA polymerase subunit omega [Arthrobacter
chlorophenolicus A6]
gi|325963371|ref|YP_004241277.1| DNA-directed RNA polymerase subunit omega [Arthrobacter
phenanthrenivorans Sphe3]
gi|219859627|gb|ACL39969.1| DNA-directed RNA polymerase, omega subunit [Arthrobacter
chlorophenolicus A6]
gi|323469458|gb|ADX73143.1| DNA-directed RNA polymerase, omega subunit [Arthrobacter
phenanthrenivorans Sphe3]
Length = 86
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
++ ++ D+++ LV+ + R R ++ P VD +K+ +ALREI
Sbjct: 13 IDSLLEAADSKYGLVIFGAKRARQINAYYAQLHEGLFEYVGPLVDTKLNEKSLSIALREI 72
Query: 54 ASGTL 58
G L
Sbjct: 73 NEGKL 77
>gi|326693164|ref|ZP_08230169.1| DNA-directed RNA polymerase subunit omega [Leuconostoc argentinum
KCTC 3773]
Length = 70
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK-DKNTVVALREIASGTLSPDDLE 64
V+ ++KVD+R+ L+ L + R R L G T + +K+ AL EI +G + D
Sbjct: 7 VDKLLEKVDSRYKLIALGAKRARELDAGLPATREKFNSNKSVGQALEEIENGDVIIDPDL 66
Query: 65 EDFI 68
ED +
Sbjct: 67 EDQV 70
>gi|223039890|ref|ZP_03610174.1| DNA-directed RNA polymerase, omega subunit [Campylobacter rectus
RM3267]
gi|222878899|gb|EEF13996.1| DNA-directed RNA polymerase, omega subunit [Campylobacter rectus
RM3267]
Length = 72
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 14 DNRFLLVLLASHRTRHLSQGAKPTVDVG--KDKNTVVALREIASGTLSPDDLEEDF 67
D+R+ L L + R L+ GAK +D+ K K +ALREIA G ++ + + E
Sbjct: 16 DDRYKLALAVAKRAEALAGGAKSLLDIDVSKMKFADIALREIAEGKVALEGIVEAA 71
>gi|118617404|ref|YP_905736.1| DNA-directed RNA polymerase subunit omega [Mycobacterium ulcerans
Agy99]
gi|118569514|gb|ABL04265.1| DNA-directed RNA polymerase (omega chain) RpoZ [Mycobacterium
ulcerans Agy99]
Length = 110
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ +D+V +++ LV+ A+ R R ++ P V+ G ++K +A+REI
Sbjct: 40 IDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREI 99
Query: 54 ASGTL 58
+ L
Sbjct: 100 HADLL 104
>gi|260892737|ref|YP_003238834.1| DNA-directed RNA polymerase, omega subunit [Ammonifex degensii
KC4]
gi|260864878|gb|ACX51984.1| DNA-directed RNA polymerase, omega subunit [Ammonifex degensii
KC4]
Length = 71
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 29/61 (47%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M ++D + NR++L +LA+ + R +++ + K ALR+IA G +
Sbjct: 3 MNEPPLDDLLKLTKNRYILAILAAKQARKINEKMNAGLIDDGMKPVSRALRQIAEGKVKF 62
Query: 61 D 61
Sbjct: 63 A 63
>gi|310659163|ref|YP_003936884.1| omega subunit of RNA polymerase [Clostridium sticklandii DSM 519]
gi|308825941|emb|CBH21979.1| Omega subunit of RNA polymerase (modular protein) [Clostridium
sticklandii]
Length = 84
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDD 62
+ D ++K D+R+ LV S R R L +G+ V+ ++K VA E+ ++
Sbjct: 6 INDLLNKADSRYCLVNEVSKRARQLVEGSDKMVETVEEKPVSVATFEVFEEKVTYKT 62
>gi|254821095|ref|ZP_05226096.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
intracellulare ATCC 13950]
Length = 108
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ +D+V +++ LV+ A+ R R ++ P V+ G ++K +ALREI
Sbjct: 38 IDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREI 97
Query: 54 ASGTL 58
L
Sbjct: 98 HGDLL 102
>gi|183982216|ref|YP_001850507.1| DNA-directed RNA polymerase (omega chain) RpoZ [Mycobacterium
marinum M]
gi|183175542|gb|ACC40652.1| DNA-directed RNA polymerase (omega chain) RpoZ [Mycobacterium
marinum M]
Length = 110
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ +D+V +++ LV+ A+ R R ++ P V+ G ++K +A+REI
Sbjct: 40 IDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREI 99
Query: 54 ASGTL 58
+ L
Sbjct: 100 HADLL 104
>gi|15611780|ref|NP_223431.1| DNA-directed RNA polymerase subunit omega [Helicobacter pylori
J99]
gi|108563186|ref|YP_627502.1| DNA-directed RNA polymerase subunit omega [Helicobacter pylori
HPAG1]
gi|109947215|ref|YP_664443.1| DNA-directed RNA polymerase subunit omega [Helicobacter
acinonychis str. Sheeba]
gi|207092021|ref|ZP_03239808.1| DNA-directed RNA polymerase subunit omega [Helicobacter pylori
HPKX_438_AG0C1]
gi|217033731|ref|ZP_03439157.1| hypothetical protein HP9810_7g12 [Helicobacter pylori 98-10]
gi|254779251|ref|YP_003057356.1| DNA-directed RNA polymerase subunit omega [Helicobacter pylori
B38]
gi|298736480|ref|YP_003729006.1| DNA-directed RNA polymerase subunit omega [Helicobacter pylori
B8]
gi|308182934|ref|YP_003927061.1| DNA-directed RNA polymerase subunit omega [Helicobacter pylori
PeCan4]
gi|308184561|ref|YP_003928694.1| DNA-directed RNA polymerase subunit omega [Helicobacter pylori
SJM180]
gi|41692293|sp|P60325|RPOZ_HELPY RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|41692294|sp|P60326|RPOZ_HELPJ RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|123066268|sp|Q17Y32|RPOZ_HELAH RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|123073782|sp|Q1CT94|RPOZ_HELPH RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|4155269|gb|AAD06288.1| putative [Helicobacter pylori J99]
gi|107836959|gb|ABF84828.1| RNA polymerase omega chain, a transcriptional activator
[Helicobacter pylori HPAG1]
gi|109714436|emb|CAJ99444.1| DNA-directed RNA polymerase subunit omega [Helicobacter
acinonychis str. Sheeba]
gi|216943780|gb|EEC23220.1| hypothetical protein HP9810_7g12 [Helicobacter pylori 98-10]
gi|254001162|emb|CAX29121.1| DNA-directed RNA polymerase omega chain (RNAP omega subunit)
(Transcriptase omega chain) (RNA polymerase omega
subunit) [Helicobacter pylori B38]
gi|261837992|gb|ACX97758.1| RNA polymerase omega chain [Helicobacter pylori 51]
gi|261839407|gb|ACX99172.1| DNA-directed RNA polymerase subunit omega [Helicobacter pylori
52]
gi|297379974|gb|ADI34861.1| DNA-directed RNA polymerase, omega subunit [Helicobacter pylori
v225d]
gi|298355670|emb|CBI66542.1| DNA-directed RNA polymerase subunit omega [Helicobacter pylori
B8]
gi|307637467|gb|ADN79917.1| DNA-directed RNA polymerase omega subunit [Helicobacter pylori
908]
gi|308060481|gb|ADO02377.1| DNA-directed RNA polymerase subunit omega [Helicobacter pylori
SJM180]
gi|308063438|gb|ADO05325.1| DNA-directed RNA polymerase subunit omega [Helicobacter pylori
Sat464]
gi|308065119|gb|ADO07011.1| DNA-directed RNA polymerase subunit omega [Helicobacter pylori
PeCan4]
gi|315586558|gb|ADU40939.1| DNA-directed RNA polymerase subunit omega [Helicobacter pylori
35A]
gi|317009213|gb|ADU79793.1| DNA-directed RNA polymerase subunit omega [Helicobacter pylori
India7]
gi|317010993|gb|ADU84740.1| DNA-directed RNA polymerase subunit omega [Helicobacter pylori
SouthAfrica7]
gi|317012587|gb|ADU83195.1| DNA-directed RNA polymerase subunit omega [Helicobacter pylori
Lithuania75]
gi|317014186|gb|ADU81622.1| DNA-directed RNA polymerase subunit omega [Helicobacter pylori
Gambia94/24]
gi|317177392|dbj|BAJ55181.1| DNA-directed RNA polymerase subunit omega [Helicobacter pylori
F16]
gi|317178863|dbj|BAJ56651.1| DNA-directed RNA polymerase subunit omega [Helicobacter pylori
F30]
gi|317180541|dbj|BAJ58327.1| DNA-directed RNA polymerase subunit omega [Helicobacter pylori
F32]
gi|317182088|dbj|BAJ59872.1| DNA-directed RNA polymerase subunit omega [Helicobacter pylori
F57]
gi|325996057|gb|ADZ51462.1| DNA-directed RNA polymerase omega subunit [Helicobacter pylori
2018]
gi|325997653|gb|ADZ49861.1| DNA-directed RNA polymerase omega subunit [Helicobacter pylori
2017]
gi|332673419|gb|AEE70236.1| DNA-directed RNA polymerase subunit omega [Helicobacter pylori
83]
Length = 74
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 6 VEDCIDKVDN-RFLLVLLASHRTRHLSQGAKPTV--DVGKDKNTVVALREIASGTLSPDD 62
V + + N R++L L R + L+ GAK V D + K +A+REIA G + D
Sbjct: 10 VAQALKNIGNDRYMLDNLVFARVKQLNAGAKTLVNMDPKRHKLVDIAIREIAEGKIDIDR 69
Query: 63 LEED 66
++E
Sbjct: 70 IDER 73
>gi|207109162|ref|ZP_03243324.1| DNA-directed RNA polymerase subunit omega [Helicobacter pylori
HPKX_438_CA4C1]
Length = 73
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 6 VEDCIDKVDN-RFLLVLLASHRTRHLSQGAKPTV--DVGKDKNTVVALREIASGTLSPDD 62
V + + N R++L L R + L+ GAK V D + K +A+REIA G + D
Sbjct: 9 VAQALKNIGNDRYMLDNLVFARVKQLNAGAKTLVNMDPKRHKLVDIAIREIAEGKIDIDR 68
Query: 63 LEED 66
++E
Sbjct: 69 IDER 72
>gi|152990506|ref|YP_001356228.1| DNA-directed RNA polymerase, omega subunit [Nitratiruptor sp.
SB155-2]
gi|189043991|sp|A6Q312|RPOZ_NITSB RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|151422367|dbj|BAF69871.1| DNA-directed RNA polymerase, omega subunit [Nitratiruptor sp.
SB155-2]
Length = 70
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 15 NRFLLVLLASHRTRHLSQGAKPTVDVG--KDKNTVVALREIASGTLSPDDLEED 66
+R+LL + + R L+ G +P V+V K K T +AL EIA G L + +E
Sbjct: 17 DRYLLSIAVAKRANELATGKEPLVEVDVKKYKYTDIALMEIAEGKLKIEVEKES 70
>gi|281355275|ref|ZP_06241769.1| DNA-directed RNA polymerase, omega subunit [Victivallis vadensis
ATCC BAA-548]
gi|281318155|gb|EFB02175.1| DNA-directed RNA polymerase, omega subunit [Victivallis vadensis
ATCC BAA-548]
Length = 90
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 11 DKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLSPD 61
+ + +L ++A+ R + L+ GA+P + + VAL EIA G LS +
Sbjct: 11 KMIPDPQILSVVAAKRAKQLAIGGARPMIKCDSENLIDVALLEIAEGLLSYE 62
>gi|188527379|ref|YP_001910066.1| DNA-directed RNA polymerase subunit omega [Helicobacter pylori
Shi470]
gi|226703142|sp|B2UT54|RPOZ_HELPS RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|188143619|gb|ACD48036.1| DNA-directed RNA polymerase subunit omega [Helicobacter pylori
Shi470]
gi|308062097|gb|ADO03985.1| DNA-directed RNA polymerase subunit omega [Helicobacter pylori
Cuz20]
Length = 74
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 6 VEDCIDKVDN-RFLLVLLASHRTRHLSQGAKPTV--DVGKDKNTVVALREIASGTLSPDD 62
V + + N R++L L R + L+ GAK V D + K +A+REIA G + D
Sbjct: 10 VAQALKNIGNDRYMLDNLVFVRVKQLNAGAKTLVNMDPKRHKLVDIAIREIAEGKIDIDR 69
Query: 63 LEED 66
++E
Sbjct: 70 IDER 73
>gi|225021358|ref|ZP_03710550.1| hypothetical protein CORMATOL_01377 [Corynebacterium matruchotii
ATCC 33806]
gi|305681530|ref|ZP_07404337.1| DNA-directed RNA polymerase, omega subunit [Corynebacterium
matruchotii ATCC 14266]
gi|224945740|gb|EEG26949.1| hypothetical protein CORMATOL_01377 [Corynebacterium matruchotii
ATCC 33806]
gi|305659735|gb|EFM49235.1| DNA-directed RNA polymerase, omega subunit [Corynebacterium
matruchotii ATCC 14266]
Length = 92
Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKD-KNTVVALREI 53
+++ +D V +++ LV+ A+ R R ++ + P VD + K AL EI
Sbjct: 23 IDELLDHVSSKYALVIFAAKRARQINSYYRQQDEGVFEFVGPLVDPPTEQKPLSTALLEI 82
Query: 54 ASGTLSPDD 62
G L ++
Sbjct: 83 QEGMLDHEE 91
>gi|148272961|ref|YP_001222522.1| DNA-directed RNA polymerase subunit omega [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
gi|170782384|ref|YP_001710717.1| DNA-directed RNA polymerase subunit omega [Clavibacter
michiganensis subsp. sepedonicus]
gi|166229415|sp|A5CRX2|RPOZ_CLAM3 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|189043975|sp|B0REV6|RPOZ_CLAMS RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|147830891|emb|CAN01835.1| DNA-directed RNA polymerase, omega subunit [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
gi|169156953|emb|CAQ02122.1| putative DNA-directed RNA polymerase omega chain [Clavibacter
michiganensis subsp. sepedonicus]
Length = 89
Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK------------PTVDVG-KDKNTVVALRE 52
+++ + KVD+++ LV+ AS R R ++ P VD DK VA+ E
Sbjct: 13 IDELLSKVDSKYALVIFASKRARQINDYYADLHEGSLFDNVGPLVDSTIDDKPLSVAMHE 72
Query: 53 IASGTLSPDDLEEDF 67
I L + E
Sbjct: 73 INEDKLVATPIVEPA 87
>gi|189183169|ref|YP_001936954.1| hypothetical protein OTT_0262 [Orientia tsutsugamushi str. Ikeda]
gi|189179940|dbj|BAG39720.1| hypothetical protein OTT_0262 [Orientia tsutsugamushi str. Ikeda]
Length = 128
Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVV--ALREIASGTLSPDDLEEDFI 68
V NRF LV L++H L+ G+ K + ++ AL I + ++ +L E I
Sbjct: 10 QHVANRFELVSLSAHLVIELNSGSNIMASHAKKDSNLIMTALNGILTEEVNIPELREKLI 69
Query: 69 HSLQKHV 75
Q
Sbjct: 70 LKHQTQS 76
>gi|149196458|ref|ZP_01873513.1| phosphoribosylaminoimidazole-succinocarboxamide synthase
[Lentisphaera araneosa HTCC2155]
gi|149140719|gb|EDM29117.1| phosphoribosylaminoimidazole-succinocarboxamide synthase
[Lentisphaera araneosa HTCC2155]
Length = 73
Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKD---KNTV-----VALREIASGTLSPD 61
++ + ++ +LV LA+ R +++G P +D +D + V +AL EIA G ++ +
Sbjct: 10 LEVIGDKNVLVNLAAKRASQINKGDHPLIDTPRDAHNRPLVLSTLEIALIEIAEGKVTFE 69
Query: 62 DLE 64
+E
Sbjct: 70 HIE 72
>gi|296111288|ref|YP_003621670.1| DNA-directed RNA polymerase, omega subunit [Leuconostoc kimchii
IMSNU 11154]
gi|295832820|gb|ADG40701.1| DNA-directed RNA polymerase, omega subunit [Leuconostoc kimchii
IMSNU 11154]
Length = 70
Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK-DKNTVVALREIASGTLSPDDLE 64
V+ ++KVD+R+ L+ L + R R L G T + +K+ AL EI +G + D
Sbjct: 7 VDKLLEKVDSRYKLIALGAKRARELDAGLPATRENFNSNKSVGRALEEIENGDVVIDPEI 66
Query: 65 EDFI 68
ED +
Sbjct: 67 EDQV 70
>gi|147678129|ref|YP_001212344.1| DNA-directed RNA polymerase, subunit K/omega [Pelotomaculum
thermopropionicum SI]
gi|189043992|sp|A5D1C3|RPOZ_PELTS RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|146274226|dbj|BAF59975.1| DNA-directed RNA polymerase, subunit K/omega [Pelotomaculum
thermopropionicum SI]
Length = 69
Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSPD 61
++KVD+R+ LV++A+ R R L++ K D K AL EIA +
Sbjct: 10 LEKVDSRYTLVVVAAKRARELTERGKTKADGAAVMKPVTAALMEIAQNKVGYK 62
>gi|295094719|emb|CBK83810.1| DNA-directed RNA polymerase, omega subunit [Coprococcus sp.
ART55/1]
Length = 79
Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVG-KDKNTVVALREIASGTLSPDDLEED 66
V++R+ +VL + R R + G +P V K K +A+ E+ G + +ED
Sbjct: 25 VNSRYSIVLATAKRAREIIDGQEPMVAADPKKKPLSIAVDEVYHGKVKIVGADED 79
>gi|310642743|ref|YP_003947501.1| DNA-directed RNA polymerase omega subunit (transcriptase omega
chain) [Paenibacillus polymyxa SC2]
gi|309247693|gb|ADO57260.1| DNA-directed RNA polymerase omega subunit (transcriptase omega
chain) [Paenibacillus polymyxa SC2]
Length = 67
Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-PTVDVGKDKNTVVALREIASGTLSPDDLE 64
+++ + KVD+++ LV+ AS R R L +G K K VAL EI + L + E
Sbjct: 6 IDEMMKKVDSKYSLVVAASRRARQLREGEKTSLKSPKSHKQVGVALEEIYADHLLLESGE 65
Query: 65 ED 66
E+
Sbjct: 66 EE 67
>gi|294786448|ref|ZP_06751702.1| DNA-directed RNA polymerase, omega subunit [Parascardovia
denticolens F0305]
gi|294485281|gb|EFG32915.1| DNA-directed RNA polymerase, omega subunit [Parascardovia
denticolens F0305]
Length = 96
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 13/68 (19%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQG-----------AKPTVDVGKDKNT-VVALREIASGTL 58
+R+ L + A+ R R ++ P V+ + +A REI G L
Sbjct: 22 KHAQSRYALAMFAAKRARQINSYFTQLNEGLLQNVGPLVEYKNQEKPLTIAFREINEGLL 81
Query: 59 SPDDLEED 66
+ L ED
Sbjct: 82 E-ETLGED 88
>gi|94970803|ref|YP_592851.1| DNA-directed RNA polymerase, omega subunit [Candidatus Koribacter
versatilis Ellin345]
gi|94552853|gb|ABF42777.1| DNA-directed RNA polymerase, omega subunit [Candidatus Koribacter
versatilis Ellin345]
Length = 77
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTL 58
D+ + +L+A+ R R + GA PT+D K+ +A E+ +G +
Sbjct: 7 FDSNYRYILVAARRARQIQNGAHPTIDTQTKKSCRIAEEEVKAGNI 52
>gi|297530657|ref|YP_003671932.1| DNA-directed RNA polymerase subunit omega [Geobacillus sp.
C56-T3]
gi|319766181|ref|YP_004131682.1| DNA-directed RNA polymerase subunit omega [Geobacillus sp.
Y412MC52]
gi|297253909|gb|ADI27355.1| DNA-directed RNA polymerase, omega subunit [Geobacillus sp.
C56-T3]
gi|317111047|gb|ADU93539.1| DNA-directed RNA polymerase, omega subunit [Geobacillus sp.
Y412MC52]
Length = 68
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTL 58
+ KVD+++ LV + + R R L GA+ V K V AL EIA +
Sbjct: 12 MQKVDSKYKLVTVVAKRARELQDGAELMVKKPVSKKFVGQALEEIAGDKV 61
>gi|255322537|ref|ZP_05363682.1| DNA-directed RNA polymerase, omega subunit [Campylobacter showae
RM3277]
gi|255300445|gb|EET79717.1| DNA-directed RNA polymerase, omega subunit [Campylobacter showae
RM3277]
Length = 72
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 14 DNRFLLVLLASHRTRHLSQGAKPTVDVG--KDKNTVVALREIASGTLSPDDLEEDF 67
D+R++L L + R L+ GAK +D+ K K +ALREIA G ++ + + E
Sbjct: 16 DDRYMLALAVAKRAEALAGGAKSLLDIDVTKMKFADIALREIAEGKIALEGIVEAA 71
>gi|170016774|ref|YP_001727693.1| DNA-directed RNA polymerase, omega subunit [Leuconostoc citreum
KM20]
gi|169803631|gb|ACA82249.1| DNA-directed RNA polymerase, omega subunit [Leuconostoc citreum
KM20]
Length = 70
Score = 42.9 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLSPDDLE 64
V+ ++KVD+R+ L+ L + R R L G T + +K+ AL EI +G + D
Sbjct: 7 VDKLLEKVDSRYKLIALGAKRARELDAGLPATQEKFESNKSVGKALEEIENGDVIIDPDL 66
Query: 65 EDFI 68
ED +
Sbjct: 67 EDQV 70
>gi|229829113|ref|ZP_04455182.1| hypothetical protein GCWU000342_01198 [Shuttleworthia satelles
DSM 14600]
gi|229792276|gb|EEP28390.1| hypothetical protein GCWU000342_01198 [Shuttleworthia satelles
DSM 14600]
Length = 136
Score = 42.9 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTL 58
V++R+ +V + R R L GA P ++ K +A+ E+A G L
Sbjct: 34 VNSRYTIVAACAKRARQLIAGASPMIENTEGMKPITIAVHELAQGKL 80
>gi|56419703|ref|YP_147021.1| DNA-directed RNA polymerase subunit omega [Geobacillus
kaustophilus HTA426]
gi|261419366|ref|YP_003253048.1| DNA-directed RNA polymerase subunit omega [Geobacillus sp.
Y412MC61]
gi|81558001|sp|Q5L0S7|RPOZ_GEOKA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|56379545|dbj|BAD75453.1| DNA-directed RNA polymerase omega subunit (transcriptase omega
chain) [Geobacillus kaustophilus HTA426]
gi|261375823|gb|ACX78566.1| DNA-directed RNA polymerase, omega subunit [Geobacillus sp.
Y412MC61]
Length = 66
Score = 42.9 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTL 58
+ KVD+++ LV + + R R L GA+ V K V AL EIA +
Sbjct: 10 MQKVDSKYKLVTVVAKRARELQDGAELMVKKPVSKKFVGQALEEIAGDKV 59
>gi|229820534|ref|YP_002882060.1| DNA-directed RNA polymerase, omega subunit [Beutenbergia cavernae
DSM 12333]
gi|259494383|sp|C5C692|RPOZ_BEUC1 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|229566447|gb|ACQ80298.1| DNA-directed RNA polymerase, omega subunit [Beutenbergia cavernae
DSM 12333]
Length = 90
Score = 42.9 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
+++ + D+++ LV+ A+ R R ++ P V+ + + +A+REI
Sbjct: 16 IDELLTAADSKYALVIYAAKRARQINAYYAQLNEGLLEYVGPLVETRNQEKPLSIAMREI 75
Query: 54 ASGTLSPDDLE 64
G L+ + E
Sbjct: 76 NKGLLTVEATE 86
>gi|172057938|ref|YP_001814398.1| DNA-directed RNA polymerase, omega subunit [Exiguobacterium
sibiricum 255-15]
gi|226703134|sp|B1YIQ5|RPOZ_EXIS2 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|171990459|gb|ACB61381.1| DNA-directed RNA polymerase, omega subunit [Exiguobacterium
sibiricum 255-15]
Length = 67
Score = 42.9 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTL 58
V+ V +++ +V +A+ R R + G + V K V AL E+ SG +
Sbjct: 6 VDKLQKTVPSKYTIVTVAAKRARQIQDGKRVKVANPKSYKPVGKALEELFSGEV 59
>gi|119961853|ref|YP_948001.1| DNA-directed RNA polymerase, omega subunit [Arthrobacter
aurescens TC1]
gi|119948712|gb|ABM07623.1| DNA-directed RNA polymerase, omega subunit [Arthrobacter
aurescens TC1]
Length = 86
Score = 42.9 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
++ ++ D+++ LV+ + R R ++ P VD +K+ +ALREI
Sbjct: 13 IDSLLEAADSKYGLVIFGAKRARQINAYYAQLHEGLFEYVGPLVDTKLNEKSLSIALREI 72
Query: 54 ASGTL 58
G L
Sbjct: 73 NEGLL 77
>gi|154175277|ref|YP_001407886.1| DNA-directed RNA polymerase subunit omega [Campylobacter curvus
525.92]
gi|189043973|sp|A7GXE4|RPOZ_CAMC5 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|112803431|gb|EAU00775.1| DNA-directed RNA polymerase, omega subunit [Campylobacter curvus
525.92]
Length = 71
Score = 42.9 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 14 DNRFLLVLLASHRTRHLSQGAKPTVDVG--KDKNTVVALREIASGTLSPDDLEE 65
D+R+ L L+ + R L+ GA+ ++ K K +AL E+A G + + + E
Sbjct: 16 DDRYKLSLIVAKRAEALANGAQALIEGDTSKMKFADIALMEVAEGKIGLEAIVE 69
>gi|315646174|ref|ZP_07899294.1| DNA-directed RNA polymerase, omega subunit [Paenibacillus vortex
V453]
gi|315278373|gb|EFU41689.1| DNA-directed RNA polymerase, omega subunit [Paenibacillus vortex
V453]
Length = 66
Score = 42.9 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSPD 61
+++ ++KVD+++ LV+ AS R R L +G + K VAL EI + +
Sbjct: 6 IDEMMNKVDSKYSLVVAASRRARQLREGEVSELKHPKSHKYVGVALEEIYGDYVKIE 62
>gi|240144122|ref|ZP_04742723.1| DNA-directed RNA polymerase, omega subunit [Roseburia
intestinalis L1-82]
gi|257203914|gb|EEV02199.1| DNA-directed RNA polymerase, omega subunit [Roseburia
intestinalis L1-82]
gi|291536226|emb|CBL09338.1| DNA-directed RNA polymerase, omega subunit [Roseburia
intestinalis M50/1]
Length = 89
Score = 42.9 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVGK-DKNTVVALREIASGTLSP 60
V++R+ +V+ A+ R R + G +P + K +A+ E+ G +
Sbjct: 33 VNSRYSIVIAAAKRARQIIAGDEPMAEKKVCPKPLSIAVEELYEGKVKI 81
>gi|163840700|ref|YP_001625105.1| DNA-directed RNA polymerase omega chain [Renibacterium
salmoninarum ATCC 33209]
gi|162954176|gb|ABY23691.1| DNA-directed RNA polymerase omega chain [Renibacterium
salmoninarum ATCC 33209]
Length = 89
Score = 42.9 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
++ ++ D+++ LV+ + R R ++ P VD +K+ +ALREI
Sbjct: 13 IDSLLEAADSKYGLVIFGAKRARQINAYYAQLHEGLFEYVGPLVDTKLNEKSLSIALREI 72
Query: 54 ASGTLSPDDL 63
G L +
Sbjct: 73 NEGMLVAKPV 82
>gi|258515531|ref|YP_003191753.1| DNA-directed RNA polymerase, omega subunit [Desulfotomaculum
acetoxidans DSM 771]
gi|257779236|gb|ACV63130.1| DNA-directed RNA polymerase, omega subunit [Desulfotomaculum
acetoxidans DSM 771]
Length = 68
Score = 42.5 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLE 64
+D VD+R+ LV++++ R R L++ + K AL E+ G + L+
Sbjct: 10 LDMVDSRYTLVVVSAKRARQLTELFQTNESELPGKPVTTALHELLRGKVRYRRLK 64
>gi|83589743|ref|YP_429752.1| DNA-directed RNA polymerase, omega subunit [Moorella
thermoacetica ATCC 39073]
gi|115305588|sp|Q2RK30|RPOZ_MOOTA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|83572657|gb|ABC19209.1| DNA-directed RNA polymerase subunit omega [Moorella thermoacetica
ATCC 39073]
Length = 67
Score = 42.5 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPD 61
+ +++ L +LA+ R R L++ K +AL EIA+G + +
Sbjct: 11 KRAGSKYALAVLAAKRARMLTESQFAAQYPKGTKPVTIALMEIAAGKIKYE 61
>gi|323489532|ref|ZP_08094759.1| hypothetical protein GPDM_09305 [Planococcus donghaensis MPA1U2]
gi|323396663|gb|EGA89482.1| hypothetical protein GPDM_09305 [Planococcus donghaensis MPA1U2]
Length = 74
Score = 42.5 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 12 KVDNRFLLVLLASHRTRHLSQ-GAKPTVDVGKDKNTVVALREIASGTLSPDDLEEDFIHS 70
++D+++ LV LAS R R L + G + K+ AL E+A+G L P+ +E I+
Sbjct: 12 RIDSKYSLVALASKRARQLHEHGDEKLDSYTSVKSVGKALEEVAAGVLVPEKQDEFAIYE 71
>gi|212639620|ref|YP_002316140.1| DNA-directed RNA polymerase subunit omega [Anoxybacillus
flavithermus WK1]
gi|212561100|gb|ACJ34155.1| DNA-directed RNA polymerase, subunit K/omega [Anoxybacillus
flavithermus WK1]
Length = 72
Score = 42.5 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTLSPDDLEED 66
+ K+D+++ LV +A+ R R L T++ K V AL EIA+G + EE
Sbjct: 13 MTKLDSKYTLVTVAAKRARQLQVKNDLTIEKPVSKKFVGKALEEIAAGHIEVVSEEEA 70
>gi|319956607|ref|YP_004167870.1| DNA-directed RNA polymerase, omega subunit [Nitratifractor
salsuginis DSM 16511]
gi|319419011|gb|ADV46121.1| DNA-directed RNA polymerase, omega subunit [Nitratifractor
salsuginis DSM 16511]
Length = 69
Score = 42.5 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 10 IDKVD-NRFLLVLLASHRTRHLSQGAKPTVDVG--KDKNTVVALREIASGTLSPD 61
+++V+ +R+LL R L+ GA P VD+ K K T +AL EIA G L +
Sbjct: 12 LERVNHDRYLLSKAVGKRAEELNAGATPLVDMDVKKHKTTDIALHEIAEGKLHIE 66
>gi|295396141|ref|ZP_06806324.1| DNA-directed RNA polymerase subunit omega [Brevibacterium
mcbrellneri ATCC 49030]
gi|294971082|gb|EFG46974.1| DNA-directed RNA polymerase subunit omega [Brevibacterium
mcbrellneri ATCC 49030]
Length = 109
Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTV-DVGKDKNTVVALREI 53
++D ++K ++++ LV+ AS R R ++ P V +K +ALREI
Sbjct: 13 IDDLLEKTESKYELVIEASRRARQINAYYAQLQEGLLENVGPLVTPEPNEKPLSIALREI 72
Query: 54 ASGTLSPDDLEED 66
+ + E
Sbjct: 73 DQDKIIIREATEA 85
>gi|157164342|ref|YP_001467341.1| DNA-directed RNA polymerase subunit omega [Campylobacter concisus
13826]
gi|189043972|sp|A7ZEY3|RPOZ_CAMC1 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|112801906|gb|EAT99250.1| DNA-directed RNA polymerase, omega subunit [Campylobacter
concisus 13826]
Length = 71
Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 14 DNRFLLVLLASHRTRHLSQGAKPTVDVG--KDKNTVVALREIASGTLSPDDLEE 65
D+R+ L L+ + R L+ GA VD K K +AL E+A G + + + E
Sbjct: 16 DDRYKLSLIVAKRAEALANGAIALVDADTSKMKFADIALLEVAEGKIGLEAIVE 69
>gi|323701804|ref|ZP_08113475.1| DNA-directed RNA polymerase, omega subunit [Desulfotomaculum
nigrificans DSM 574]
gi|323533340|gb|EGB23208.1| DNA-directed RNA polymerase, omega subunit [Desulfotomaculum
nigrificans DSM 574]
Length = 69
Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTL 58
M + T+++ + KVD+R+ LV+ A+ R R L++ T + K +AL EIA+ +
Sbjct: 2 MNKPTLDELMTKVDSRYTLVVAAAKRARMLTEEEIKTNQPLEKKPVTMALEEIAAERV 59
>gi|315452767|ref|YP_004073037.1| putative DNA-directed RNA polymerase omega chain [Helicobacter
felis ATCC 49179]
gi|315131819|emb|CBY82447.1| putative DNA-directed RNA polymerase omega chain [Helicobacter
felis ATCC 49179]
Length = 72
Score = 42.5 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 10 IDKVDN-RFLLVLLASHRTRHLSQGAKPTVDVGK---DKNTVVALREIASGTLSPDDLE 64
+ +VDN R++L L R + L GAKP + K T +AL EIA G ++ + +E
Sbjct: 11 LARVDNDRYVLSNLIFTRVKQLGAGAKPLLPKINLKEYKPTDIALLEIAEGKINLECIE 69
>gi|225850957|ref|YP_002731191.1| DNA-directed RNA polymerase, omega subunit [Persephonella marina
EX-H1]
gi|254809254|sp|C0QR95|RPOZ_PERMH RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|225646319|gb|ACO04505.1| DNA-directed RNA polymerase, omega subunit [Persephonella marina
EX-H1]
Length = 68
Score = 42.2 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 3 RTTVEDCIDKVDNRFLLVLLASHRTRHLSQ-GAKPTVDVGKD--KNTVVALREIASG 56
R +E + +V+NR+ LV A+ + L + GA+ V K TV+++ EIA G
Sbjct: 4 RPLIEQALKRVNNRYELVHAAAKLAKDLYETGAESYVTEEGIPLKKTVISINEIAKG 60
>gi|289548239|ref|YP_003473227.1| DNA-directed RNA polymerase subunit omega [Thermocrinis albus DSM
14484]
gi|289181856|gb|ADC89100.1| DNA-directed RNA polymerase, omega subunit [Thermocrinis albus
DSM 14484]
Length = 74
Score = 42.2 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 3 RTTVEDCIDKVDNRFLLVLLASHRTRH-LSQGAKP----TVDVGKDKNTVVALREIASGT 57
R +E+ + V +R+ LV A+ R +++G V K T A+ +IA G
Sbjct: 4 RPNIEEALKHVSSRYELVHAAAKRVEQLMAEGEDFFVRDKVKKEMVKKTFQAIEDIALGK 63
Query: 58 LSPDDLEEDFI 68
+ L E+ +
Sbjct: 64 VKVVKLREEEV 74
>gi|257460764|ref|ZP_05625865.1| DNA-directed RNA polymerase, omega subunit [Campylobacter
gracilis RM3268]
gi|257442095|gb|EEV17237.1| DNA-directed RNA polymerase, omega subunit [Campylobacter
gracilis RM3268]
Length = 72
Score = 42.2 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 15 NRFLLVLLASHRTRHLSQGAKPT---VDVGKDKNTVVALREIASGTLSPDDLEE 65
+R+ L L+ S R L+ G P VD + K +A+ E+A G ++ D + +
Sbjct: 17 DRYKLSLMISKRAEQLAAGEPPLIDNVDTRRMKFADIAILELAEGKIALDGIVD 70
>gi|227549205|ref|ZP_03979254.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
lipophiloflavum DSM 44291]
gi|227078765|gb|EEI16728.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
lipophiloflavum DSM 44291]
Length = 109
Score = 42.2 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTV-DVGKDKNTVVALREI 53
+++ + KV +++ LV+ A+ R R ++ + P V +K +ALREI
Sbjct: 39 IDELLGKVSSKYALVIFAAKRARQINSYYQEQDEGVFEFIGPLVTPQAGEKPLSIALREI 98
Query: 54 ASGTLSPDD 62
+G L ++
Sbjct: 99 QTGLLEHEE 107
>gi|308069679|ref|YP_003871284.1| DNA-directed RNA polymerase subunit omega [Paenibacillus polymyxa
E681]
gi|305858958|gb|ADM70746.1| DNA-directed RNA polymerase omega chain (RNAP omega subunit)
[Paenibacillus polymyxa E681]
Length = 67
Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV-DVGKDKNTVVALREIASGTLSPDDLE 64
+++ + K D+++ LV+ AS R R L +G K T+ + K VAL EI + L + E
Sbjct: 6 IDEMMKKADSKYSLVVAASRRARQLREGEKTTLKNPKSHKQVGVALEEIYADHLRLESGE 65
Query: 65 ED 66
++
Sbjct: 66 DE 67
>gi|182414533|ref|YP_001819599.1| DNA-directed RNA polymerase, omega subunit [Opitutus terrae
PB90-1]
gi|177841747|gb|ACB75999.1| DNA-directed RNA polymerase, omega subunit [Opitutus terrae
PB90-1]
Length = 66
Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLSPD 61
++D + + + LL+ + S R + L +G +P V+ K + VALREI G +S +
Sbjct: 6 IKDALKVIPDPNLLINVVSRRVKQLRRGNRPLVESLEKLSSEDVALREIIEGKISFE 62
>gi|239826561|ref|YP_002949185.1| DNA-directed RNA polymerase subunit omega [Geobacillus sp. WCH70]
gi|259494500|sp|C5D8R2|RPOZ_GEOSW RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|239806854|gb|ACS23919.1| DNA-directed RNA polymerase, omega subunit [Geobacillus sp.
WCH70]
Length = 65
Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTL 58
+ KVD+++ LV +A+ R R L + + T+ K V AL EIA+ +
Sbjct: 10 MQKVDSKYKLVTVAAKRARQLQENEELTIKNPVSKKFVGQALEEIAADHI 59
>gi|319649625|ref|ZP_08003781.1| DNA-directed RNA polymerase omega subunit [Bacillus sp.
2_A_57_CT2]
gi|317398787|gb|EFV79469.1| DNA-directed RNA polymerase omega subunit [Bacillus sp.
2_A_57_CT2]
Length = 73
Score = 42.2 bits (98), Expect = 0.024, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTL 58
++ + K+D+++ LV +A+ R R L A+P ++ KN AL EI + L
Sbjct: 6 IDSLMTKIDSKYSLVSVAAKRARKLQLNARPQLESYKSHKNVGKALEEIHADQL 59
>gi|315640289|ref|ZP_07895406.1| DNA-directed RNA polymerase subunit omega [Enterococcus italicus
DSM 15952]
gi|315483951|gb|EFU74430.1| DNA-directed RNA polymerase subunit omega [Enterococcus italicus
DSM 15952]
Length = 101
Score = 42.2 bits (98), Expect = 0.024, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLS 59
M + +++ +++V++++ LV+LAS R L GA+ T++ K+ AL EI + T+
Sbjct: 2 MLKPSIDSLLNQVNSKYSLVILASKRAHELDAGAQATLEKFDSVKSVGQALEEIDAETVV 61
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHK 93
D E + + +E +E + E K
Sbjct: 62 VDPHPE--VKRARLKLEAEEQKAKKELEQKDLEK 93
>gi|283780893|ref|YP_003371648.1| DNA-directed RNA polymerase subunit omega [Pirellula staleyi DSM
6068]
gi|283439346|gb|ADB17788.1| DNA-directed RNA polymerase, omega subunit [Pirellula staleyi DSM
6068]
Length = 87
Score = 42.2 bits (98), Expect = 0.024, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 7 EDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPD 61
E+ ++KV RF L L R L+ G++P V+V + L+EI + D
Sbjct: 8 EEIVNKVGGRFKLSTLMQKRMVQLNAGSRPLVEVTTHDKMAIVLKEILQDKIYLD 62
>gi|269127216|ref|YP_003300586.1| DNA-directed RNA polymerase subunit omega [Thermomonospora
curvata DSM 43183]
gi|268312174|gb|ACY98548.1| DNA-directed RNA polymerase, omega subunit [Thermomonospora
curvata DSM 43183]
Length = 84
Score = 42.2 bits (98), Expect = 0.025, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
+++ ++ VD ++ LV +A+ R R ++ P V+ + + +ALRE+
Sbjct: 13 IDELLEVVDTKYGLVTIAAKRARQINAYYAQLGEGLLEYVGPLVETQVQEKPLSIALREV 72
Query: 54 ASGTLSPDDLEE 65
G L + ++
Sbjct: 73 REGLLHAEPIDN 84
>gi|196234698|ref|ZP_03133511.1| DNA-directed RNA polymerase, omega subunit [Chthoniobacter flavus
Ellin428]
gi|196221246|gb|EDY15803.1| DNA-directed RNA polymerase, omega subunit [Chthoniobacter flavus
Ellin428]
Length = 73
Score = 42.2 bits (98), Expect = 0.025, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 7 EDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLSPD 61
E+ + ++ LLV + S R R L+ G +P V+ + + +AL+EI G L +
Sbjct: 7 EEAFKVIPSQQLLVNVVSKRVRQLTAGHRPMVETGPRMGFSDIALKEIIEGKLKFE 62
>gi|331001873|ref|ZP_08325394.1| DNA-directed RNA polymerase subunit omega [Lachnospiraceae oral
taxon 107 str. F0167]
gi|330412196|gb|EGG91590.1| DNA-directed RNA polymerase subunit omega [Lachnospiraceae oral
taxon 107 str. F0167]
Length = 81
Score = 42.2 bits (98), Expect = 0.027, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
V +R+ +V+ ++ R R + G P V K +A+ E+ +
Sbjct: 25 VQSRYSIVIASAKRARQIIDGDVPEVKADGKKPLSIAVEELFEQKVRI 72
>gi|149182341|ref|ZP_01860819.1| DNA-directed RNA polymerase omega subunit [Bacillus sp. SG-1]
gi|148849960|gb|EDL64132.1| DNA-directed RNA polymerase omega subunit [Bacillus sp. SG-1]
Length = 73
Score = 42.2 bits (98), Expect = 0.027, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQ-GAKPTVDVGKDKNTVVALREIASGTLSPDDLE 64
++ + K+D+++ LV +AS R R L + G+ +K AL EI +G LS + E
Sbjct: 6 IDSLMKKIDSKYSLVSIASKRARGLQEDGSFMLNKYVSEKYVGKALEEIEAGKLSMKERE 65
Query: 65 EDFIHS 70
++S
Sbjct: 66 VGAVYS 71
>gi|33520053|ref|NP_878885.1| DNA-directed RNA polymerase omega chain [Candidatus Blochmannia
floridanus]
gi|33504399|emb|CAD83292.1| DNA-directed RNA polymerase omega chain [Candidatus Blochmannia
floridanus]
Length = 60
Score = 42.2 bits (98), Expect = 0.027, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGA-KPTVDVGKDKNTVVALREIASGTLSPD 61
++++++RF L+L+AS R + Q + K K TV+AL+E+ ++ D
Sbjct: 7 VEEINSRFDLILVASKYARSIQQKENSIQLSSCKHKCTVIALQELEKSMINID 59
>gi|291519358|emb|CBK74579.1| DNA-directed RNA polymerase, omega subunit [Butyrivibrio
fibrisolvens 16/4]
Length = 80
Score = 41.8 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVGK-DKNTVVALREIASGTLSP 60
V++R+ +V + R R + GA+P + K +K +A+ E+ G +
Sbjct: 25 VNSRYTIVAATAKRARQIIDGAEPLIKYQKGEKPLSIAVNELNDGAIKI 73
>gi|224282709|ref|ZP_03646031.1| DNA-directed RNA polymerase subunit omega [Bifidobacterium bifidum
NCIMB 41171]
gi|310287168|ref|YP_003938426.1| DNA-directed RNA polymerase omega chain [Bifidobacterium bifidum
S17]
gi|311064031|ref|YP_003970756.1| DNA-directed RNA polymerase omega chain RpoZ [Bifidobacterium
bifidum PRL2010]
gi|313139867|ref|ZP_07802060.1| DNA-directed RNA polymerase subunit omega [Bifidobacterium bifidum
NCIMB 41171]
gi|309251104|gb|ADO52852.1| DNA-directed RNA polymerase omega chain [Bifidobacterium bifidum
S17]
gi|310866350|gb|ADP35719.1| RpoZ DNA-directed RNA polymerase omega chain [Bifidobacterium
bifidum PRL2010]
gi|313132377|gb|EFR49994.1| DNA-directed RNA polymerase subunit omega [Bifidobacterium bifidum
NCIMB 41171]
Length = 107
Score = 41.8 bits (97), Expect = 0.029, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 13/73 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQG-----------AKPTVDVGKDKNTV-VALREI 53
++D + D+++ L + A+ R R ++ P V+ + + +A REI
Sbjct: 30 IDDLMKHADSKYALAIFAAKRARQINSYFTQLNEGLLQNVGPLVEYQNQEKPLSIAFREI 89
Query: 54 ASGTLSPDDLEED 66
G L + L ED
Sbjct: 90 DEGLLE-ETLGED 101
>gi|237750289|ref|ZP_04580769.1| predicted protein [Helicobacter bilis ATCC 43879]
gi|229374183|gb|EEO24574.1| predicted protein [Helicobacter bilis ATCC 43879]
Length = 73
Score = 41.8 bits (97), Expect = 0.029, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 10 IDKVDN-RFLLVLLASHRTRHLSQGAKPTVDVGKD-----KNTVVALREIASGTLSPDD 62
+++ N R+ L +L R + LS GA+P ++ D + +AL+EIA G ++ +
Sbjct: 13 LEQTGNDRYKLSVLVFARVKELSVGAQPLLNYPDDYLRKMEPCDIALQEIADGKVTLAN 71
>gi|152993329|ref|YP_001359050.1| DNA-directed RNA polymerase, omega subunit [Sulfurovum sp.
NBC37-1]
gi|189044007|sp|A6QB34|RPOZ_SULNB RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|151425190|dbj|BAF72693.1| DNA-directed RNA polymerase, omega subunit [Sulfurovum sp.
NBC37-1]
Length = 68
Score = 41.8 bits (97), Expect = 0.030, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 10 IDKVD-NRFLLVLLASHRTRHLSQGAKPTVDVGKD--KNTVVALREIASGTLSPD 61
++KV+ +++LL R ++ GA+ +D K T +ALREIA G ++
Sbjct: 11 MEKVNFDKYLLANAVGKRAEKIANGAEVLLDYDTSGMKYTDIALREIAEGKITVS 65
>gi|224438176|ref|ZP_03659111.1| DNA-directed RNA polymerase subunit omega [Helicobacter cinaedi
CCUG 18818]
gi|313144621|ref|ZP_07806814.1| DNA-directed RNA polymerase subunit omega [Helicobacter cinaedi
CCUG 18818]
gi|313129652|gb|EFR47269.1| DNA-directed RNA polymerase subunit omega [Helicobacter cinaedi
CCUG 18818]
Length = 74
Score = 41.8 bits (97), Expect = 0.030, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 14 DNRFLLVLLASHRTRHLSQGAKPTVDVGK--DKNTVVALREIASGTLSPDDLEE 65
D+R+LL L R + L GA+P VD+ K +A+REIA G + +E+
Sbjct: 19 DDRYLLANLIFERVKELGNGAEPLVDMDVKLHKLPDIAMREIAEGKIEFTSIED 72
>gi|261405795|ref|YP_003242036.1| DNA-directed RNA polymerase subunit omega [Paenibacillus sp.
Y412MC10]
gi|329926617|ref|ZP_08281030.1| DNA-directed RNA polymerase, omega subunit [Paenibacillus sp.
HGF5]
gi|261282258|gb|ACX64229.1| DNA-directed RNA polymerase, omega subunit [Paenibacillus sp.
Y412MC10]
gi|328939158|gb|EGG35521.1| DNA-directed RNA polymerase, omega subunit [Paenibacillus sp.
HGF5]
Length = 66
Score = 41.8 bits (97), Expect = 0.033, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSPD 61
+++ ++KVD+++ LV+ AS R R L +G + K VAL EI + +
Sbjct: 6 IDEMMNKVDSKYSLVVAASRRARQLREGEVSELKHPKSHKFVGVALEEIYGDYVKIE 62
>gi|163815240|ref|ZP_02206617.1| hypothetical protein COPEUT_01400 [Coprococcus eutactus ATCC
27759]
gi|158449435|gb|EDP26430.1| hypothetical protein COPEUT_01400 [Coprococcus eutactus ATCC
27759]
Length = 70
Score = 41.8 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVG-KDKNTVVALREIASGTLSP 60
V++R+ +VL + R R + G +P V K K +A+ E+ G +
Sbjct: 16 VNSRYSIVLATAKRAREIIDGQEPLVAADPKKKPLSIAVDEVYHGKVKI 64
>gi|291550942|emb|CBL27204.1| DNA-directed RNA polymerase, omega subunit [Ruminococcus torques
L2-14]
Length = 81
Score = 41.8 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASG--TLSPDDLEED 66
V++R+ +V+ S R R L G P V K +A+ E+ G + P+D +E+
Sbjct: 23 KVVNSRYSIVMATSKRARQLIAGELPLVPAKDGQKPLSIAIEELNEGELKILPEDTDEE 81
>gi|257871144|ref|ZP_05650797.1| RNA polymerase [Enterococcus gallinarum EG2]
gi|257805308|gb|EEV34130.1| RNA polymerase [Enterococcus gallinarum EG2]
Length = 100
Score = 41.8 bits (97), Expect = 0.035, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLS 59
M + +++ +D+V++++ LV+LAS R L GA+ T++ K+ AL EI + +
Sbjct: 1 MLKPSIDSLLDRVNSKYSLVILASKRAHELDAGAQATLEQFDSVKSVGQALEEIEAELVV 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSDFSW 91
D E + L+ E + E +
Sbjct: 61 NDPHPEIKLARLKMEQEERKAQKDQEQKELEA 92
>gi|54025585|ref|YP_119827.1| DNA-directed RNA polymerase subunit omega [Nocardia farcinica IFM
10152]
gi|81602602|sp|Q5YTM8|RPOZ_NOCFA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|54017093|dbj|BAD58463.1| putative RNA polymerase omega subunit [Nocardia farcinica IFM
10152]
Length = 91
Score = 41.4 bits (96), Expect = 0.037, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ +++ +++ LV+ A+ R R ++ P V+ G ++K VALREI
Sbjct: 21 IDELLERTSSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSVALREI 80
Query: 54 ASGTLSPDD 62
+ L +
Sbjct: 81 HADLLEHSE 89
>gi|69245424|ref|ZP_00603419.1| RNA polymerase, omega subunit [Enterococcus faecium DO]
gi|227552690|ref|ZP_03982739.1| DNA-directed RNA polymerase [Enterococcus faecium TX1330]
gi|258614261|ref|ZP_05712031.1| DNA-directed RNA polymerase subunit omega [Enterococcus faecium
DO]
gi|289565020|ref|ZP_06445474.1| DNA-directed RNA polymerase subunit omega [Enterococcus faecium
D344SRF]
gi|293378854|ref|ZP_06625009.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecium
PC4.1]
gi|293553672|ref|ZP_06674296.1| dna-directed rna polymerase subunit omega [Enterococcus faecium
E1039]
gi|293563682|ref|ZP_06678123.1| dna-directed rna polymerase omega chain [Enterococcus faecium
E1162]
gi|293570093|ref|ZP_06681173.1| dna-directed rna polymerase omega chain [Enterococcus faecium
E1071]
gi|293572656|ref|ZP_06683624.1| dna-directed rna polymerase omega chain [Enterococcus faecium
E980]
gi|294614920|ref|ZP_06694811.1| dna-directed rna polymerase omega chain [Enterococcus faecium
E1636]
gi|294618608|ref|ZP_06698147.1| dna-directed rna polymerase omega chain [Enterococcus faecium
E1679]
gi|294623684|ref|ZP_06702517.1| dna-directed rna polymerase omega chain [Enterococcus faecium
U0317]
gi|314938234|ref|ZP_07845534.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecium
TX0133a04]
gi|314943131|ref|ZP_07849929.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecium
TX0133C]
gi|314949328|ref|ZP_07852670.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecium
TX0082]
gi|314952262|ref|ZP_07855276.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecium
TX0133A]
gi|314992118|ref|ZP_07857568.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecium
TX0133B]
gi|314996300|ref|ZP_07861356.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecium
TX0133a01]
gi|68195806|gb|EAN10242.1| RNA polymerase, omega subunit [Enterococcus faecium DO]
gi|227178177|gb|EEI59149.1| DNA-directed RNA polymerase [Enterococcus faecium TX1330]
gi|289163227|gb|EFD11073.1| DNA-directed RNA polymerase subunit omega [Enterococcus faecium
D344SRF]
gi|291587465|gb|EFF19349.1| dna-directed rna polymerase omega chain [Enterococcus faecium
E1071]
gi|291592206|gb|EFF23824.1| dna-directed rna polymerase omega chain [Enterococcus faecium
E1636]
gi|291595127|gb|EFF26465.1| dna-directed rna polymerase omega chain [Enterococcus faecium
E1679]
gi|291596899|gb|EFF28117.1| dna-directed rna polymerase omega chain [Enterococcus faecium
U0317]
gi|291602247|gb|EFF32475.1| dna-directed rna polymerase subunit omega [Enterococcus faecium
E1039]
gi|291604366|gb|EFF33859.1| dna-directed rna polymerase omega chain [Enterococcus faecium
E1162]
gi|291607242|gb|EFF36596.1| dna-directed rna polymerase omega chain [Enterococcus faecium
E980]
gi|292642395|gb|EFF60550.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecium
PC4.1]
gi|313589544|gb|EFR68389.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecium
TX0133a01]
gi|313593332|gb|EFR72177.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecium
TX0133B]
gi|313595604|gb|EFR74449.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecium
TX0133A]
gi|313598139|gb|EFR76984.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecium
TX0133C]
gi|313642430|gb|EFS07010.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecium
TX0133a04]
gi|313644277|gb|EFS08857.1| DNA-directed RNA polymerase, omega subunit [Enterococcus faecium
TX0082]
Length = 101
Score = 41.4 bits (96), Expect = 0.037, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLS 59
M + +++ +D+V++++ LV+LAS R L A+PT+D K+ AL EI +G +
Sbjct: 2 MLKPSIDSLLDRVNSKYSLVILASKRAHELDASAQPTLDSFDSVKSVGQALEEIDAGNVV 61
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEAL 97
D E L+ E + E + E
Sbjct: 62 NDPHPELKRERLKMEEEERQAQKEREQHELESRIREEQ 99
>gi|256825110|ref|YP_003149070.1| DNA-directed RNA polymerase, omega subunit [Kytococcus
sedentarius DSM 20547]
gi|256688503|gb|ACV06305.1| DNA-directed RNA polymerase, omega subunit [Kytococcus
sedentarius DSM 20547]
Length = 141
Score = 41.4 bits (96), Expect = 0.038, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
++D + VD+++ LV+ ++ R R ++ P V+ DK +AL+EI
Sbjct: 16 IDDLLQHVDSKYALVIYSAKRARQINAYYAQLKEGLLEYVGPLVEAEASDKPLSIALQEI 75
Query: 54 ASGTL 58
+ L
Sbjct: 76 NADKL 80
>gi|257879835|ref|ZP_05659488.1| RNA polymerase [Enterococcus faecium 1,230,933]
gi|257882561|ref|ZP_05662214.1| RNA polymerase [Enterococcus faecium 1,231,502]
gi|257886041|ref|ZP_05665694.1| RNA polymerase [Enterococcus faecium 1,231,501]
gi|257888658|ref|ZP_05668311.1| RNA polymerase [Enterococcus faecium 1,141,733]
gi|257891676|ref|ZP_05671329.1| RNA polymerase [Enterococcus faecium 1,231,410]
gi|257894151|ref|ZP_05673804.1| RNA polymerase [Enterococcus faecium 1,231,408]
gi|257897385|ref|ZP_05677038.1| RNA polymerase [Enterococcus faecium Com12]
gi|257899946|ref|ZP_05679599.1| RNA polymerase [Enterococcus faecium Com15]
gi|260559508|ref|ZP_05831689.1| RNA polymerase [Enterococcus faecium C68]
gi|261206659|ref|ZP_05921357.1| RNA polymerase [Enterococcus faecium TC 6]
gi|257814063|gb|EEV42821.1| RNA polymerase [Enterococcus faecium 1,230,933]
gi|257818219|gb|EEV45547.1| RNA polymerase [Enterococcus faecium 1,231,502]
gi|257821897|gb|EEV49027.1| RNA polymerase [Enterococcus faecium 1,231,501]
gi|257824712|gb|EEV51644.1| RNA polymerase [Enterococcus faecium 1,141,733]
gi|257828036|gb|EEV54662.1| RNA polymerase [Enterococcus faecium 1,231,410]
gi|257830530|gb|EEV57137.1| RNA polymerase [Enterococcus faecium 1,231,408]
gi|257833950|gb|EEV60371.1| RNA polymerase [Enterococcus faecium Com12]
gi|257837858|gb|EEV62932.1| RNA polymerase [Enterococcus faecium Com15]
gi|260074607|gb|EEW62928.1| RNA polymerase [Enterococcus faecium C68]
gi|260079152|gb|EEW66845.1| RNA polymerase [Enterococcus faecium TC 6]
Length = 100
Score = 41.4 bits (96), Expect = 0.038, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLS 59
M + +++ +D+V++++ LV+LAS R L A+PT+D K+ AL EI +G +
Sbjct: 1 MLKPSIDSLLDRVNSKYSLVILASKRAHELDASAQPTLDSFDSVKSVGQALEEIDAGNVV 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEAL 97
D E L+ E + E + E
Sbjct: 61 NDPHPELKRERLKMEEEERQAQKEREQHELESRIREEQ 98
>gi|217964021|ref|YP_002349699.1| DNA-directed RNA polymerase, omega subunit [Listeria
monocytogenes HCC23]
gi|290893045|ref|ZP_06556034.1| DNA-directed RNA polymerase [Listeria monocytogenes FSL J2-071]
gi|254809247|sp|B8DDS6|RPOZ_LISMH RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|217333291|gb|ACK39085.1| DNA-directed RNA polymerase, omega subunit [Listeria
monocytogenes HCC23]
gi|290557405|gb|EFD90930.1| DNA-directed RNA polymerase [Listeria monocytogenes FSL J2-071]
Length = 67
Score = 41.4 bits (96), Expect = 0.038, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTR--HLSQGAKPTVDVGKDKNTVVALREIASGTLSPDD 62
+++ + K+D+++ LV +A+ R R L DK AL EI +G L +
Sbjct: 6 IDNLLLKIDSKYSLVTVAAKRARYMQLENDKGVLPSYQSDKFVGKALEEIHAGKLVLKN 64
>gi|313891922|ref|ZP_07825523.1| DNA-directed RNA polymerase, omega subunit [Dialister
microaerophilus UPII 345-E]
gi|329120943|ref|ZP_08249574.1| DNA-directed RNA polymerase subunit omega [Dialister
micraerophilus DSM 19965]
gi|313119565|gb|EFR42756.1| DNA-directed RNA polymerase, omega subunit [Dialister
microaerophilus UPII 345-E]
gi|327471105|gb|EGF16559.1| DNA-directed RNA polymerase subunit omega [Dialister
micraerophilus DSM 19965]
Length = 67
Score = 41.4 bits (96), Expect = 0.039, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDL 63
+++ + VD ++ LV L + R R L+ + K +AL EI + P +
Sbjct: 7 IDELVKIVDTKYTLVTLVAMRARELTDNEAQLIREKNKKAVTIALEEIYENKVEPKKI 64
>gi|218133586|ref|ZP_03462390.1| hypothetical protein BACPEC_01454 [Bacteroides pectinophilus ATCC
43243]
gi|217990961|gb|EEC56967.1| hypothetical protein BACPEC_01454 [Bacteroides pectinophilus ATCC
43243]
Length = 103
Score = 41.4 bits (96), Expect = 0.039, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSP 60
V +R+ +VL S R R + G +P ++ K +A+ E+ G +
Sbjct: 25 VQSRYSIVLATSKRAREIIAGDEPLIEGTKGMKPLSIAVEELYEGKIKI 73
>gi|315651496|ref|ZP_07904517.1| DNA-directed RNA polymerase subunit omega [Eubacterium saburreum
DSM 3986]
gi|315486231|gb|EFU76592.1| DNA-directed RNA polymerase subunit omega [Eubacterium saburreum
DSM 3986]
Length = 81
Score = 41.4 bits (96), Expect = 0.039, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
V +R+ +V+ ++ R R + G P V K +A+ E+ +
Sbjct: 25 VQSRYSIVIASAKRARQIIDGEIPEVKADGKKPLSIAVEELFEQKVRI 72
>gi|296272459|ref|YP_003655090.1| DNA-directed RNA polymerase subunit omega [Arcobacter
nitrofigilis DSM 7299]
gi|296096633|gb|ADG92583.1| DNA-directed RNA polymerase, omega subunit [Arcobacter
nitrofigilis DSM 7299]
Length = 70
Score = 41.4 bits (96), Expect = 0.039, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 10 IDKVDN-RFLLVLLASHRTRHLSQGAKPTVDVGKD--KNTVVALREIASGTLSPDDLEE 65
+ +V+N R++L L R LS+GAKP ++ K T +A+ EI G L + L
Sbjct: 11 LKRVNNDRYILALAVGQRADELSKGAKPLLEKNTQHMKYTDIAIDEIGEGLLVIEGLVN 69
>gi|226366346|ref|YP_002784129.1| DNA-directed RNA polymerase omega subunit [Rhodococcus opacus B4]
gi|254809255|sp|C1B4J5|RPOZ_RHOOB RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226244836|dbj|BAH55184.1| DNA-directed RNA polymerase omega subunit [Rhodococcus opacus B4]
Length = 101
Score = 41.4 bits (96), Expect = 0.039, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ + + +++ LV+ A+ R R ++ P V+ G ++K +ALREI
Sbjct: 31 IDELLARTSSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREI 90
Query: 54 ASGTL 58
S L
Sbjct: 91 HSDLL 95
>gi|111024106|ref|YP_707078.1| DNA-directed RNA polymerase omega subunit [Rhodococcus jostii
RHA1]
gi|123144027|sp|Q0S0L6|RPOZ_RHOSR RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|110823636|gb|ABG98920.1| DNA-directed RNA polymerase omega subunit [Rhodococcus jostii
RHA1]
Length = 101
Score = 41.4 bits (96), Expect = 0.039, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ + + +++ LV+ A+ R R ++ P V+ G ++K +ALREI
Sbjct: 31 IDELLARTSSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREI 90
Query: 54 ASGTL 58
S L
Sbjct: 91 HSDLL 95
>gi|157736897|ref|YP_001489580.1| DNA-directed RNA polymerase, omega chain [Arcobacter butzleri
RM4018]
gi|315636074|ref|ZP_07891331.1| DNA-directed RNA polymerase subunit omega [Arcobacter butzleri
JV22]
gi|157698751|gb|ABV66911.1| DNA-directed RNA polymerase, omega chain [Arcobacter butzleri
RM4018]
gi|315479643|gb|EFU70319.1| DNA-directed RNA polymerase subunit omega [Arcobacter butzleri
JV22]
Length = 72
Score = 41.4 bits (96), Expect = 0.040, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 10 IDKVDN-RFLLVLLASHRTRHLSQGAKPTVD--VGKDKNTVVALREIASGTLSPDDLEE 65
+ +VDN R++L + R LS+GAKP ++ K K T +A+ EIA+G L + L +
Sbjct: 12 LKQVDNDRYILAIAVGQRADELSKGAKPLLEQNTQKMKYTDIAIDEIAAGLLKIEGLVD 70
>gi|307571408|emb|CAR84587.1| DNA-directed RNA polymerase, omega subunit [Listeria
monocytogenes L99]
Length = 68
Score = 41.4 bits (96), Expect = 0.040, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTR--HLSQGAKPTVDVGKDKNTVVALREIASGTLSPDD 62
+++ + K+D+++ LV +A+ R R L DK AL EI +G L +
Sbjct: 7 IDNLLLKIDSKYSLVTVAAKRARYMQLENDKGVLPSYQSDKFVGKALEEIHAGKLVLKN 65
>gi|149194044|ref|ZP_01871142.1| hypothetical protein CMTB2_03128 [Caminibacter mediatlanticus
TB-2]
gi|149135997|gb|EDM24475.1| hypothetical protein CMTB2_03128 [Caminibacter mediatlanticus
TB-2]
Length = 67
Score = 41.4 bits (96), Expect = 0.040, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 10 IDKVD-NRFLLVLLASHRTRHLSQGAKPTVD--VGKDKNTVVALREIASGTLSPDDL 63
+++VD +R+LL + R L G KP ++ + T +A+ EIA G + ++
Sbjct: 11 LERVDYDRYLLSQAVAKRVNQLLNGEKPLIELPKKNMQPTEIAILEIAEGLIKVKEI 67
>gi|262202273|ref|YP_003273481.1| DNA-directed RNA polymerase subunit omega [Gordonia bronchialis
DSM 43247]
gi|262085620|gb|ACY21588.1| DNA-directed RNA polymerase, omega subunit [Gordonia bronchialis
DSM 43247]
Length = 99
Score = 41.4 bits (96), Expect = 0.041, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
++D +++ +++ LV+ A+ R R ++ P V+ G ++K +A+REI
Sbjct: 29 IDDLLERASSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIAMREI 88
Query: 54 ASGTL 58
S L
Sbjct: 89 HSDLL 93
>gi|184155730|ref|YP_001844070.1| DNA-directed RNA polymerase omega subunit [Lactobacillus
fermentum IFO 3956]
gi|260663553|ref|ZP_05864443.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
fermentum 28-3-CHN]
gi|226703145|sp|B2GD58|RPOZ_LACF3 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|183227074|dbj|BAG27590.1| DNA-directed RNA polymerase omega subunit [Lactobacillus
fermentum IFO 3956]
gi|260552094|gb|EEX25147.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
fermentum 28-3-CHN]
Length = 94
Score = 41.4 bits (96), Expect = 0.043, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 23/79 (29%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHL---------------------SQGAKPTV--DVGK 42
V+ +++VD+R+ L++LAS R + +G KP +
Sbjct: 7 VDKLLERVDSRYSLIMLASKRAHEIDKYRIDKWRAAHPDKAGETVSLEGDKPLLLDHYDS 66
Query: 43 DKNTVVALREIASGTLSPD 61
+K+ +AL EI +G ++ D
Sbjct: 67 NKSVGMALEEIEAGLVTID 85
>gi|294500987|ref|YP_003564687.1| DNA-directed RNA polymerase subunit omega [Bacillus megaterium QM
B1551]
gi|295706335|ref|YP_003599410.1| DNA-directed RNA polymerase subunit omega [Bacillus megaterium
DSM 319]
gi|294350924|gb|ADE71253.1| DNA-directed RNA polymerase, omega subunit [Bacillus megaterium
QM B1551]
gi|294803994|gb|ADF41060.1| DNA-directed RNA polymerase, omega subunit [Bacillus megaterium
DSM 319]
Length = 73
Score = 41.4 bits (96), Expect = 0.043, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKD-KNTVVALREIASGTLSPDD 62
++ ++K+D+++ LV +A+ R R L ++ K AL EI + LS
Sbjct: 6 IDSLMEKLDSKYTLVTVAAKRARQLQLHNDTPIEKPVSYKFVGCALEEINAEQLSYKQ 63
>gi|16803866|ref|NP_465351.1| DNA-directed RNA polymerase subunit omega [Listeria monocytogenes
EGD-e]
gi|224500057|ref|ZP_03668406.1| DNA-directed RNA polymerase, omega subunit [Listeria
monocytogenes Finland 1988]
gi|224501372|ref|ZP_03669679.1| DNA-directed RNA polymerase, omega subunit [Listeria
monocytogenes FSL R2-561]
gi|254826132|ref|ZP_05231133.1| DNA-directed RNA polymerase [Listeria monocytogenes FSL J1-194]
gi|254829179|ref|ZP_05233866.1| DNA-directed RNA polymerase [Listeria monocytogenes FSL N3-165]
gi|254831572|ref|ZP_05236227.1| DNA-directed RNA polymerase subunit omega [Listeria monocytogenes
10403S]
gi|254852733|ref|ZP_05242081.1| DNA-directed RNA polymerase [Listeria monocytogenes FSL R2-503]
gi|254899477|ref|ZP_05259401.1| DNA-directed RNA polymerase subunit omega [Listeria monocytogenes
J0161]
gi|254912384|ref|ZP_05262396.1| DNA-directed RNA polymerase [Listeria monocytogenes J2818]
gi|254933298|ref|ZP_05266657.1| DNA-directed RNA polymerase [Listeria monocytogenes HPB2262]
gi|254936711|ref|ZP_05268408.1| DNA-directed RNA polymerase [Listeria monocytogenes F6900]
gi|254993324|ref|ZP_05275514.1| DNA-directed RNA polymerase subunit omega [Listeria monocytogenes
FSL J2-064]
gi|255028173|ref|ZP_05300124.1| DNA-directed RNA polymerase subunit omega [Listeria monocytogenes
LO28]
gi|255521883|ref|ZP_05389120.1| DNA-directed RNA polymerase subunit omega [Listeria monocytogenes
FSL J1-175]
gi|300763861|ref|ZP_07073858.1| DNA-directed RNA polymerase, omega subunit [Listeria
monocytogenes FSL N1-017]
gi|20978686|sp|Q8Y673|RPOZ_LISMO RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|67461449|sp|Q71YJ0|RPOZ_LISMF RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|16411280|emb|CAC99904.1| lmo1826 [Listeria monocytogenes EGD-e]
gi|258601589|gb|EEW14914.1| DNA-directed RNA polymerase [Listeria monocytogenes FSL N3-165]
gi|258606056|gb|EEW18664.1| DNA-directed RNA polymerase [Listeria monocytogenes FSL R2-503]
gi|258609308|gb|EEW21916.1| DNA-directed RNA polymerase [Listeria monocytogenes F6900]
gi|293584858|gb|EFF96890.1| DNA-directed RNA polymerase [Listeria monocytogenes HPB2262]
gi|293590366|gb|EFF98700.1| DNA-directed RNA polymerase [Listeria monocytogenes J2818]
gi|293595372|gb|EFG03133.1| DNA-directed RNA polymerase [Listeria monocytogenes FSL J1-194]
gi|300515597|gb|EFK42647.1| DNA-directed RNA polymerase, omega subunit [Listeria
monocytogenes FSL N1-017]
gi|328466177|gb|EGF37334.1| DNA-directed RNA polymerase subunit omega [Listeria monocytogenes
1816]
gi|328473550|gb|EGF44387.1| DNA-directed RNA polymerase subunit omega [Listeria monocytogenes
220]
gi|332312267|gb|EGJ25362.1| DNA-directed RNA polymerase subunit omega [Listeria monocytogenes
str. Scott A]
Length = 67
Score = 41.4 bits (96), Expect = 0.044, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTR--HLSQGAKPTVDVGKDKNTVVALREIASGTL 58
+++ + K+D+++ LV +A+ R R L DK AL EI +G L
Sbjct: 6 IDNLLLKIDSKYSLVTVAAKRARYMQLENDKGVLPSYQSDKFVGKALEEIHAGKL 60
>gi|315303731|ref|ZP_07874241.1| DNA-directed RNA polymerase, omega subunit [Listeria ivanovii FSL
F6-596]
gi|313627897|gb|EFR96520.1| DNA-directed RNA polymerase, omega subunit [Listeria ivanovii FSL
F6-596]
gi|313632758|gb|EFR99726.1| DNA-directed RNA polymerase, omega subunit [Listeria seeligeri
FSL N1-067]
gi|313637335|gb|EFS02820.1| DNA-directed RNA polymerase, omega subunit [Listeria seeligeri
FSL S4-171]
Length = 67
Score = 41.4 bits (96), Expect = 0.044, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTR--HLSQGAKPTVDVGKDKNTVVALREIASGTLSPDD 62
+++ + K+D+++ LV +A+ R R L DK AL EI +G L +
Sbjct: 6 IDNLLLKIDSKYSLVTVAAKRARYMQLENDKGVLPSYESDKFVGKALEEIHAGKLVLKN 64
>gi|289435169|ref|YP_003465041.1| DNA-directed RNA polymerase, omega subunit [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|289171413|emb|CBH27957.1| DNA-directed RNA polymerase, omega subunit [Listeria seeligeri
serovar 1/2b str. SLCC3954]
Length = 68
Score = 41.4 bits (96), Expect = 0.045, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTR--HLSQGAKPTVDVGKDKNTVVALREIASGTLSPDD 62
+++ + K+D+++ LV +A+ R R L DK AL EI +G L +
Sbjct: 7 IDNLLLKIDSKYSLVTVAAKRARYMQLENDKGVLPSYESDKFVGKALEEIHAGKLVLKN 65
>gi|289706193|ref|ZP_06502556.1| DNA-directed RNA polymerase, omega subunit [Micrococcus luteus
SK58]
gi|289557032|gb|EFD50360.1| DNA-directed RNA polymerase, omega subunit [Micrococcus luteus
SK58]
Length = 146
Score = 41.4 bits (96), Expect = 0.046, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 48/126 (38%), Gaps = 22/126 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
++ +++VD+++ LVL A+ R R ++ P VD +K +ALREI
Sbjct: 13 IDSLLERVDSKYALVLFAAKRARQINAYYSQLHEGLFEYVGPLVDTQLNEKPLSIALREI 72
Query: 54 ASGTLSPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINN 113
E D + S + E D E+ E F + D + + +
Sbjct: 73 ----------ETDLLESHEAVEATPEADLAAEDFGDFSLPGEDDPFATLESSDAHQPMGD 122
Query: 114 IVTPDK 119
++
Sbjct: 123 PAAIEE 128
>gi|46908058|ref|YP_014447.1| DNA-directed RNA polymerase subunit omega [Listeria monocytogenes
serotype 4b str. F2365]
gi|47093063|ref|ZP_00230841.1| DNA-directed RNA polymerase, omega subunit [Listeria
monocytogenes str. 4b H7858]
gi|47096547|ref|ZP_00234137.1| DNA-directed RNA polymerase, omega subunit [Listeria
monocytogenes str. 1/2a F6854]
gi|226224429|ref|YP_002758536.1| hypothetical protein Lm4b_01842b [Listeria monocytogenes
Clip81459]
gi|284802272|ref|YP_003414137.1| hypothetical protein LM5578_2028 [Listeria monocytogenes 08-5578]
gi|284995414|ref|YP_003417182.1| hypothetical protein LM5923_1979 [Listeria monocytogenes 08-5923]
gi|259494503|sp|C1KWC5|RPOZ_LISMC RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|46881328|gb|AAT04624.1| DNA-directed RNA polymerase, omega subunit [Listeria
monocytogenes serotype 4b str. F2365]
gi|47015079|gb|EAL06022.1| DNA-directed RNA polymerase, omega subunit [Listeria
monocytogenes str. 1/2a F6854]
gi|47018564|gb|EAL09319.1| DNA-directed RNA polymerase, omega subunit [Listeria
monocytogenes str. 4b H7858]
gi|225876891|emb|CAS05600.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|284057834|gb|ADB68775.1| hypothetical protein LM5578_2028 [Listeria monocytogenes 08-5578]
gi|284060881|gb|ADB71820.1| hypothetical protein LM5923_1979 [Listeria monocytogenes 08-5923]
Length = 68
Score = 41.4 bits (96), Expect = 0.047, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTR--HLSQGAKPTVDVGKDKNTVVALREIASGTL 58
+++ + K+D+++ LV +A+ R R L DK AL EI +G L
Sbjct: 7 IDNLLLKIDSKYSLVTVAAKRARYMQLENDKGVLPSYQSDKFVGKALEEIHAGKL 61
>gi|291563522|emb|CBL42338.1| DNA-directed RNA polymerase, omega subunit [butyrate-producing
bacterium SS3/4]
Length = 105
Score = 41.0 bits (95), Expect = 0.048, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 14/94 (14%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTLSPDDLEEDFIHSL 71
V +R+ +V+ AS R R L G +P V K + A++E+ +
Sbjct: 25 VQSRYSIVIAASKRARQLIAGDEPLVAGAAGKKPLSTAVQELYEQKVKI----------- 73
Query: 72 QKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEG 105
E +EP+ T+ E + +E
Sbjct: 74 --LTEDEEPEIETDFEVKDRTPEEIKKEEEYAEE 105
>gi|116873261|ref|YP_850042.1| DNA-directed RNA polymerase, omega subunit [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|123461210|sp|A0AJT1|RPOZ_LISW6 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|116742139|emb|CAK21263.1| DNA-directed RNA polymerase, omega subunit [Listeria welshimeri
serovar 6b str. SLCC5334]
Length = 67
Score = 41.0 bits (95), Expect = 0.048, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTR--HLSQGAKPTVDVGKDKNTVVALREIASGTLSPDD 62
+++ + K+D+++ LV +A+ R R L DK AL EI +G L +
Sbjct: 6 IDNLLLKIDSKYSLVTVAAKRARYMQLENDKGVLPSYQSDKFVGKALEEIHAGKLVLKN 64
>gi|291276820|ref|YP_003516592.1| putative DNA-directed RNA polymerase subunit omega [Helicobacter
mustelae 12198]
gi|290964014|emb|CBG39853.1| putative DNA-directed RNA polymerase omega chain [Helicobacter
mustelae 12198]
Length = 69
Score = 41.0 bits (95), Expect = 0.050, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 10 IDKVDN-RFLLVLLASHRTRHLSQGAKPTV---DVGKDKNTVVALREIASGTLSPDDL 63
+++ N R++L + R + L GA+P V DV DK + +A+REIA G + + +
Sbjct: 11 LEQTSNDRYVLANMVFVRVKQLENGARPLVTPADVKVDKLSDIAMREIAEGKIHIEKI 68
>gi|16801006|ref|NP_471274.1| DNA-directed RNA polymerase subunit omega [Listeria innocua
Clip11262]
gi|315282829|ref|ZP_07871149.1| DNA-directed RNA polymerase, omega subunit [Listeria marthii FSL
S4-120]
gi|20978703|sp|Q92AI2|RPOZ_LISIN RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|16414441|emb|CAC97170.1| lin1940 [Listeria innocua Clip11262]
gi|313613525|gb|EFR87349.1| DNA-directed RNA polymerase, omega subunit [Listeria marthii FSL
S4-120]
gi|313618285|gb|EFR90340.1| DNA-directed RNA polymerase, omega subunit [Listeria innocua FSL
S4-378]
gi|313623234|gb|EFR93482.1| DNA-directed RNA polymerase, omega subunit [Listeria innocua FSL
J1-023]
Length = 67
Score = 41.0 bits (95), Expect = 0.054, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTR--HLSQGAKPTVDVGKDKNTVVALREIASGTL 58
+++ + K+D+++ LV +A+ R R L DK AL EI +G L
Sbjct: 6 IDNLLLKIDSKYSLVTVAAKRARYMQLENDKGVLPSYQSDKFVGKALEEIHAGKL 60
>gi|325567764|ref|ZP_08144375.1| DNA-directed RNA polymerase subunit omega [Enterococcus
casseliflavus ATCC 12755]
gi|325158537|gb|EGC70684.1| DNA-directed RNA polymerase subunit omega [Enterococcus
casseliflavus ATCC 12755]
Length = 101
Score = 41.0 bits (95), Expect = 0.055, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLS 59
M + +++ +D+V++++ LV+LAS R L GA+ T++ K+ AL EI + +
Sbjct: 2 MLKPSIDSLLDRVNSKYSLVILASKRAHELDAGAQATLENFDSVKSVGQALEEIEAELVV 61
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWH 92
D E I + +E +E + +
Sbjct: 62 NDPHPE--IKRARLKMEQEERKAQKDQEQKELE 92
>gi|319950537|ref|ZP_08024447.1| DNA-directed RNA polymerase subunit omega [Dietzia cinnamea P4]
gi|319435787|gb|EFV90997.1| DNA-directed RNA polymerase subunit omega [Dietzia cinnamea P4]
Length = 94
Score = 41.0 bits (95), Expect = 0.058, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 12/69 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ +++ +++ LV+ A+ R R ++ P VD G +K +ALRE+
Sbjct: 24 IDELLERASSKYALVIFAAKRARQINSYYNQIEEGILEYVGPLVDPGLHEKPLTIALREL 83
Query: 54 ASGTLSPDD 62
S L +
Sbjct: 84 HSDLLDCAE 92
>gi|296140276|ref|YP_003647519.1| DNA-directed RNA polymerase subunit omega [Tsukamurella
paurometabola DSM 20162]
gi|296028410|gb|ADG79180.1| DNA-directed RNA polymerase, omega subunit [Tsukamurella
paurometabola DSM 20162]
Length = 91
Score = 41.0 bits (95), Expect = 0.058, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ +D+ +++ LV+ A+ R R ++ P V+ G +K +A+REI
Sbjct: 21 IDELLDRTSSKYALVIYAAKRARQINDYYNSLSDGILEYVGPLVEPGLHEKPLSIAMREI 80
Query: 54 ASGTL 58
L
Sbjct: 81 HEDLL 85
>gi|108799338|ref|YP_639535.1| DNA-directed RNA polymerase subunit omega [Mycobacterium sp. MCS]
gi|119868454|ref|YP_938406.1| DNA-directed RNA polymerase subunit omega [Mycobacterium sp. KMS]
gi|126434996|ref|YP_001070687.1| DNA-directed RNA polymerase subunit omega [Mycobacterium sp. JLS]
gi|108769757|gb|ABG08479.1| DNA-directed RNA polymerase, omega subunit [Mycobacterium sp. MCS]
gi|119694543|gb|ABL91616.1| DNA-directed RNA polymerase, omega subunit [Mycobacterium sp. KMS]
gi|126234796|gb|ABN98196.1| DNA-directed RNA polymerase, omega subunit [Mycobacterium sp. JLS]
Length = 107
Score = 41.0 bits (95), Expect = 0.058, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ +D+ +++ LV+ A+ R R ++ P V+ G ++K +ALREI
Sbjct: 37 IDELLDRASSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREI 96
Query: 54 ASGTL 58
L
Sbjct: 97 HEDLL 101
>gi|255281118|ref|ZP_05345673.1| putative DNA-directed RNA polymerase, omega subunit [Bryantella
formatexigens DSM 14469]
gi|255268566|gb|EET61771.1| putative DNA-directed RNA polymerase, omega subunit [Bryantella
formatexigens DSM 14469]
Length = 124
Score = 41.0 bits (95), Expect = 0.059, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEEDFIHSLQ 72
V++R+ +VL + R R L G KP +K +A+ E++ G + L ED L+
Sbjct: 25 VNSRYSIVLATAKRARQLIDGRKPLSMPAINKPLSIAVDELSKGLIKI--LPEDAAEELE 82
>gi|257868123|ref|ZP_05647776.1| RNA polymerase [Enterococcus casseliflavus EC30]
gi|257874602|ref|ZP_05654255.1| RNA polymerase [Enterococcus casseliflavus EC10]
gi|257877732|ref|ZP_05657385.1| RNA polymerase [Enterococcus casseliflavus EC20]
gi|257802237|gb|EEV31109.1| RNA polymerase [Enterococcus casseliflavus EC30]
gi|257808766|gb|EEV37588.1| RNA polymerase [Enterococcus casseliflavus EC10]
gi|257811898|gb|EEV40718.1| RNA polymerase [Enterococcus casseliflavus EC20]
Length = 100
Score = 41.0 bits (95), Expect = 0.061, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLS 59
M + +++ +D+V++++ LV+LAS R L GA+ T++ K+ AL EI + +
Sbjct: 1 MLKPSIDSLLDRVNSKYSLVILASKRAHELDAGAQATLENFDSVKSVGQALEEIEAELVV 60
Query: 60 PDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWH 92
D E I + +E +E + +
Sbjct: 61 NDPHPE--IKRARLKMEQEERKAQKDQEQKELE 91
>gi|239917755|ref|YP_002957313.1| DNA-directed RNA polymerase, omega subunit [Micrococcus luteus
NCTC 2665]
gi|281413750|ref|ZP_06245492.1| DNA-directed RNA polymerase, omega subunit [Micrococcus luteus
NCTC 2665]
gi|239838962|gb|ACS30759.1| DNA-directed RNA polymerase, omega subunit [Micrococcus luteus
NCTC 2665]
Length = 146
Score = 40.6 bits (94), Expect = 0.063, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
++ +++VD+++ LVL A+ R R ++ P VD +K +ALREI
Sbjct: 13 IDSLLERVDSKYALVLFAAKRARQINAYYSQLHEGLFEYVGPLVDTQLNEKPLSIALREI 72
Query: 54 ASGTL 58
+ L
Sbjct: 73 EADLL 77
>gi|227515678|ref|ZP_03945727.1| DNA-directed RNA polymerase [Lactobacillus fermentum ATCC 14931]
gi|227085926|gb|EEI21238.1| DNA-directed RNA polymerase [Lactobacillus fermentum ATCC 14931]
Length = 94
Score = 40.6 bits (94), Expect = 0.064, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 23/79 (29%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHL---------------------SQGAKPTV--DVGK 42
V+ +++VD+R+ L++LAS R + +G KP +
Sbjct: 7 VDKLLERVDSRYSLIMLASKRAHEIDKYRIDKWRAAHPDKAGETVSLEGDKPLLLDHYDS 66
Query: 43 DKNTVVALREIASGTLSPD 61
+K+ +AL EI +G ++ +
Sbjct: 67 NKSVGMALEEIEAGLVTIN 85
>gi|295399759|ref|ZP_06809740.1| DNA-directed RNA polymerase, omega subunit [Geobacillus
thermoglucosidasius C56-YS93]
gi|312111731|ref|YP_003990047.1| DNA-directed RNA polymerase subunit omega [Geobacillus sp.
Y4.1MC1]
gi|294978162|gb|EFG53759.1| DNA-directed RNA polymerase, omega subunit [Geobacillus
thermoglucosidasius C56-YS93]
gi|311216832|gb|ADP75436.1| DNA-directed RNA polymerase, omega subunit [Geobacillus sp.
Y4.1MC1]
Length = 66
Score = 40.6 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTL 58
+ KVD+++ LV + + R R L + A+ TV K V AL EIA+ +
Sbjct: 10 MQKVDSKYKLVTVVAKRARQLQEDAELTVKNPVSKKFVGQALEEIAADHI 59
>gi|291287468|ref|YP_003504284.1| DNA-directed RNA polymerase, omega subunit [Denitrovibrio
acetiphilus DSM 12809]
gi|290884628|gb|ADD68328.1| DNA-directed RNA polymerase, omega subunit [Denitrovibrio
acetiphilus DSM 12809]
Length = 83
Score = 40.6 bits (94), Expect = 0.067, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 11 DKVDNRFLLVLLASHRTRHLS---QGAKPTVDVGKDKNTVVALREIASGTLSPDDL 63
D + +RF LV +A R R L+ +G+ P + K T AL EI + + +
Sbjct: 13 DNLHSRFKLVHIAGLRARELNAPTEGSAPRQNNDHSKVTTTALDEIIRHQIVFERV 68
>gi|213965604|ref|ZP_03393798.1| DNA-directed RNA polymerase, omega subunit [Corynebacterium
amycolatum SK46]
gi|213951763|gb|EEB63151.1| DNA-directed RNA polymerase, omega subunit [Corynebacterium
amycolatum SK46]
Length = 92
Score = 40.6 bits (94), Expect = 0.068, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGK-DKNTVVALREI 53
+++ + K +++ L + A+ R R ++ + P V G +K +ALREI
Sbjct: 23 IDELLGKASSKYALAIFAAKRARQINDYYQQIDEGMLEYVGPLVTPGVAEKPLSIALREI 82
Query: 54 ASGTLSPDD 62
+G L +
Sbjct: 83 NAGLLDHTE 91
>gi|332295628|ref|YP_004437551.1| DNA-directed RNA polymerase subunit omega [Thermodesulfobium
narugense DSM 14796]
gi|332178731|gb|AEE14420.1| DNA-directed RNA polymerase subunit omega [Thermodesulfobium
narugense DSM 14796]
Length = 63
Score = 40.6 bits (94), Expect = 0.069, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 7 EDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
E+ + + +R+ LV++A R + + D A EIASG +
Sbjct: 7 ENALKMIPSRYALVIVAVKRAKEIKSNKDIFATNVSD-PLEQAFEEIASGKIKF 59
>gi|325265341|ref|ZP_08132065.1| DNA-directed RNA polymerase, omega subunit [Clostridium sp. D5]
gi|324029342|gb|EGB90633.1| DNA-directed RNA polymerase, omega subunit [Clostridium sp. D5]
Length = 81
Score = 40.6 bits (94), Expect = 0.071, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTLSP 60
V++R+ +VL S R R L G P V+ ++ + A+ E+ G L
Sbjct: 23 KIVNSRYSIVLATSKRARQLIDGELPLVNARGEEKPLSTAIEELNEGKLKI 73
>gi|295109888|emb|CBL23841.1| DNA-directed RNA polymerase, omega subunit [Ruminococcus obeum
A2-162]
Length = 103
Score = 40.6 bits (94), Expect = 0.072, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 14 DNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTLSP 60
++R+ LVL S R R L GA+P V DK + VA+ E+ G +
Sbjct: 27 NSRYSLVLATSKRARQLIAGAEPLVPNAADKKPLSVAIDELYKGEVKI 74
>gi|108804309|ref|YP_644246.1| DNA-directed RNA polymerase subunit omega [Rubrobacter
xylanophilus DSM 9941]
gi|123069102|sp|Q1AVZ4|RPOZ_RUBXD RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|108765552|gb|ABG04434.1| DNA-directed RNA polymerase, omega subunit [Rubrobacter
xylanophilus DSM 9941]
Length = 106
Score = 40.6 bits (94), Expect = 0.072, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK------------PTVDVGKDKNTVVALREI 53
+E+ +DKVD+R+ LV+ + R R +++ P V +A+ E+
Sbjct: 7 IEELLDKVDSRYGLVVATAKRARQINEYTATLGLNESLGIPGPQVHTRSQHPLTIAIEEL 66
Query: 54 ASGTLSP 60
+G L
Sbjct: 67 RAGKLKV 73
>gi|260578790|ref|ZP_05846697.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
jeikeium ATCC 43734]
gi|258603088|gb|EEW16358.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
jeikeium ATCC 43734]
Length = 96
Score = 40.6 bits (94), Expect = 0.073, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
+++ + KV +++ LV+ A+ R R ++ + P V + + +ALREI
Sbjct: 27 IDELLTKVSSKYALVIFAAKRARQINDYFQTVDEGVFEFVGPLVTPDVHEKPLSIALREI 86
Query: 54 ASGTL 58
L
Sbjct: 87 NRDLL 91
>gi|291279808|ref|YP_003496643.1| DNA-directed RNA polymerase omega subunit [Deferribacter
desulfuricans SSM1]
gi|290754510|dbj|BAI80887.1| DNA-directed RNA polymerase omega subunit [Deferribacter
desulfuricans SSM1]
Length = 73
Score = 40.6 bits (94), Expect = 0.073, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKD---KNTVVALREIASGTLSPDDLEED 66
+ V +RF L L+AS R R L + + TV + KN +AL EI ++ ++ +E
Sbjct: 13 EDVKSRFKLSLVASQRARELYENKEGTVPPQVEGYYKNVTIALAEIIENKITFEEEQEQ 71
>gi|256847376|ref|ZP_05552822.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
coleohominis 101-4-CHN]
gi|256716040|gb|EEU31015.1| DNA-directed RNA polymerase, omega subunit [Lactobacillus
coleohominis 101-4-CHN]
Length = 91
Score = 40.6 bits (94), Expect = 0.074, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 20/76 (26%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHL---------SQGAKPTVDVGKDKNTVV-------- 48
V++ + +VD+R+ L++LAS R + + V + DK ++
Sbjct: 7 VDELLKRVDSRYSLIMLASKRAHEIDKYEADQWRADHGDKPVSMEGDKPLLLDHYQSAKS 66
Query: 49 ---ALREIASGTLSPD 61
AL EI +G ++ D
Sbjct: 67 VGKALEEIEAGKVTID 82
>gi|32266331|ref|NP_860363.1| DNA-directed RNA polymerase subunit omega [Helicobacter hepaticus
ATCC 51449]
gi|41688645|sp|Q7VHY0|RPOZ_HELHP RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|32262381|gb|AAP77429.1| conserved hypothetical protein [Helicobacter hepaticus ATCC
51449]
Length = 74
Score = 40.6 bits (94), Expect = 0.078, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 10 IDKVDN-RFLLVLLASHRTRHLSQGAKPTVDVGKD--KNTVVALREIASGTLSPDDLEED 66
+ +V N R+LL L R + L +GAKP VD+ K +A+REIA G + +E+
Sbjct: 14 LKRVHNDRYLLASLIFERVKELGEGAKPLVDMDVKTYKLPDIAMREIAEGKVELTSIEDR 73
>gi|226306496|ref|YP_002766456.1| DNA-directed RNA polymerase omega chain [Rhodococcus erythropolis
PR4]
gi|229493659|ref|ZP_04387444.1| DNA-directed RNA polymerase, omega subunit [Rhodococcus
erythropolis SK121]
gi|259494507|sp|C0ZZD2|RPOZ_RHOE4 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226185613|dbj|BAH33717.1| DNA-directed RNA polymerase omega chain [Rhodococcus erythropolis
PR4]
gi|229319620|gb|EEN85456.1| DNA-directed RNA polymerase, omega subunit [Rhodococcus
erythropolis SK121]
Length = 99
Score = 40.2 bits (93), Expect = 0.084, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ +++ +++ LV+ ++ R R ++ P V+ G ++K +ALREI
Sbjct: 29 IDELLERTSSKYALVIYSAKRARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREI 88
Query: 54 ASGTL 58
+ L
Sbjct: 89 HADLL 93
>gi|68536095|ref|YP_250800.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
jeikeium K411]
gi|109914411|sp|Q4JVH5|RPOZ_CORJK RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|68263694|emb|CAI37182.1| DNA-directed RNA polymerase, omega subunit [Corynebacterium
jeikeium K411]
Length = 93
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
+++ + KV +++ LV+ A+ R R ++ + P V + + +ALREI
Sbjct: 24 IDELLTKVSSKYALVIFAAKRARQINDYFQTVDEGVFEFVGPLVTPDVHEKPLSIALREI 83
Query: 54 ASGTL 58
L
Sbjct: 84 NRDLL 88
>gi|153011930|ref|YP_001373143.1| DNA-directed RNA polymerase, omega subunit [Ochrobactrum anthropi
ATCC 49188]
gi|151563818|gb|ABS17314.1| DNA-directed RNA polymerase, omega subunit [Ochrobactrum anthropi
ATCC 49188]
Length = 107
Score = 40.2 bits (93), Expect = 0.087, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDL 63
DC + NRF+LVL A+ RTR L++GA+P + +G +AL+EIA+G S ++L
Sbjct: 8 DCEKALPNRFVLVLAAAARTRALNRGAEPRLALGDRNAGDLALQEIAAGAFSEEEL 63
>gi|317498380|ref|ZP_07956675.1| DNA-directed RNA polymerase subunit omega [Lachnospiraceae
bacterium 5_1_63FAA]
gi|316894274|gb|EFV16461.1| DNA-directed RNA polymerase subunit omega [Lachnospiraceae
bacterium 5_1_63FAA]
Length = 61
Score = 40.2 bits (93), Expect = 0.093, Method: Composition-based stats.
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVV 48
+ +R+ +VL ++ R R + G P V+ T++
Sbjct: 21 KVISSRYSIVLASAKRARQIIAGDMPLVEEKDGAKTII 58
>gi|289522949|ref|ZP_06439803.1| DNA-directed RNA polymerase, omega subunit [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503492|gb|EFD24656.1| DNA-directed RNA polymerase, omega subunit [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 73
Score = 40.2 bits (93), Expect = 0.094, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 12 KVDNRFLLVLLASHRTRHLSQGAKP-TVDVGKDKNTVVALREIASGTL 58
+ N+++L +L + R R LS+ A DK A+ EI G +
Sbjct: 14 NIPNKYVLTMLIAKRARALSEDASKRLFGGDGDKPINTAIEEIKEGKV 61
>gi|300934523|ref|ZP_07149779.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
resistens DSM 45100]
Length = 93
Score = 40.2 bits (93), Expect = 0.098, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ + KV +++ LV+ A+ R R ++ + P V ++K +ALREI
Sbjct: 24 IDELLTKVSSKYALVIFAAKRARQINDYFQTVDEGVFEFVGPLVTPDAQEKPLSIALREI 83
Query: 54 ASGTL 58
L
Sbjct: 84 NKDLL 88
>gi|326803902|ref|YP_004321720.1| DNA-directed RNA polymerase, omega subunit [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651269|gb|AEA01452.1| DNA-directed RNA polymerase, omega subunit [Aerococcus urinae
ACS-120-V-Col10a]
Length = 74
Score = 40.2 bits (93), Expect = 0.099, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV-DVGKDKNTVVALREIASGT--LSPDD 62
++ + +V++++ L +A+ R L + P + D K AL EI SG + PD
Sbjct: 7 IDSLLKQVNSKYSLCTIAAKRAHELQENQNPMLTDYHSPKYVGQALEEINSGDLGIDPDS 66
Query: 63 LEED 66
L +D
Sbjct: 67 LAKD 70
>gi|229822834|ref|ZP_04448904.1| hypothetical protein GCWU000282_00123 [Catonella morbi ATCC
51271]
gi|229787647|gb|EEP23761.1| hypothetical protein GCWU000282_00123 [Catonella morbi ATCC
51271]
Length = 65
Score = 40.2 bits (93), Expect = 0.10, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLSPDD 62
++ ++KV +++ L++LAS R+ L P +D K +L E+ G L +
Sbjct: 7 IDKLLEKVPSKYSLIILASKRSHDLQVYQNPQLDKYESVKAVGKSLEEVIDGKLYIKE 64
>gi|312139573|ref|YP_004006909.1| DNA-directed RNA polymerase omega subunit rpoz [Rhodococcus equi
103S]
gi|325672543|ref|ZP_08152239.1| DNA-directed RNA polymerase subunit omega [Rhodococcus equi ATCC
33707]
gi|311888912|emb|CBH48225.1| DNA-directed RNA polymerase omega subunit RpoZ [Rhodococcus equi
103S]
gi|325556420|gb|EGD26086.1| DNA-directed RNA polymerase subunit omega [Rhodococcus equi ATCC
33707]
Length = 101
Score = 40.2 bits (93), Expect = 0.10, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ +++ +++ LV+ ++ R R ++ P V+ G ++K +ALREI
Sbjct: 31 IDELLERTSSKYALVIYSAKRARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREI 90
Query: 54 ASGTL 58
+ L
Sbjct: 91 HADLL 95
>gi|163782715|ref|ZP_02177711.1| RNA polymerase omega subunit [Hydrogenivirga sp. 128-5-R1-1]
gi|159881836|gb|EDP75344.1| RNA polymerase omega subunit [Hydrogenivirga sp. 128-5-R1-1]
Length = 68
Score = 39.8 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 3 RTTVEDCIDKVDNRFLLVLLASHRTRH-LSQGAKPTV--DVGKDKNTVVALREIASGTLS 59
R +E+ + +V +R+ LV A RT L +G + + K T ++ +IA G +
Sbjct: 4 RPDIENALKQVSSRYELVHAAVRRTLQLLQEGDDFFIRGERELIKKTFQSIEDIAEGKVK 63
Query: 60 P 60
Sbjct: 64 V 64
>gi|166030900|ref|ZP_02233729.1| hypothetical protein DORFOR_00580 [Dorea formicigenerans ATCC
27755]
gi|166029167|gb|EDR47924.1| hypothetical protein DORFOR_00580 [Dorea formicigenerans ATCC
27755]
Length = 111
Score = 39.8 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDVG-KDKNTVVALREIASGTLSPDDLEEDFIH 69
V++R+ +V+ + R R + G+ P VD +K +A+ E+ G ++ EE
Sbjct: 14 KVVNSRYSIVMATAKRAREIIDGSMPLVDTKPGEKPLSIAISEMNQGKITILAEEEAAKL 73
Query: 70 SLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEG 105
+ + + +E + + + SE
Sbjct: 74 AELEAKQAEENAEEDFLNIQEEDSEKDAEAVEESED 109
>gi|217076455|ref|YP_002334171.1| DNA-directed RNA polymerase, omega subunit [Thermosipho africanus
TCF52B]
gi|259494512|sp|B7IFG6|RPOZ_THEAB RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|217036308|gb|ACJ74830.1| DNA-directed RNA polymerase, omega subunit [Thermosipho africanus
TCF52B]
Length = 75
Score = 39.8 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDD 62
+ K+ +F + + A+ R +L + AKP V+ + +AL+E++ G + +
Sbjct: 11 LKKIPYKFAIPIAAAKRAENLKEFAKPYVETWDNNYVSIALKELSEGYIRIKN 63
>gi|171911030|ref|ZP_02926500.1| hypothetical protein VspiD_07640 [Verrucomicrobium spinosum DSM
4136]
Length = 69
Score = 39.8 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVG-KDKNTVVALREIASGTLSPDDLE 64
V+ +++ +L+ + S R R L+QG V+ + +AL+EI G + +D+E
Sbjct: 6 VDKAAQIINDPPVLINMVSKRVRQLNQGRPALVERRPGMREADIALQEIIEGKIKREDIE 65
Query: 65 E 65
E
Sbjct: 66 E 66
>gi|323142201|ref|ZP_08077035.1| DNA-directed RNA polymerase, omega subunit [Phascolarctobacterium
sp. YIT 12067]
gi|322413264|gb|EFY04149.1| DNA-directed RNA polymerase, omega subunit [Phascolarctobacterium
sp. YIT 12067]
Length = 64
Score = 39.8 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKD--KNTVVALREIASGTLSPDDLEE 65
+KVD+++ LV+LA+ R R L T+ K AL+EIA+ T++ + +
Sbjct: 13 EKVDSKYTLVILAAKRAREL------TIPGVNSAEKEVSAALKEIANDTITYERTKN 63
>gi|311113654|ref|YP_003984876.1| DNA-directed RNA polymerase subunit omega [Rothia dentocariosa ATCC
17931]
gi|310945148|gb|ADP41442.1| DNA-directed RNA polymerase subunit omega [Rothia dentocariosa ATCC
17931]
Length = 164
Score = 39.8 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 22/122 (18%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREIASGT 57
I K ++++ LV+ + R R ++ P V+ DK VA+REI +
Sbjct: 45 IQKAESKYGLVIFGARRARQINAYYANLQESAGDHVGPLVESEANDKALSVAMREIMADQ 104
Query: 58 LSPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNIVTP 117
+ D + + H D P E + + FG + E + G ++
Sbjct: 105 IVADHVPDG-------HFNEDGYLVPEEFASLGLGDAD---FGAIEEEYIPAGTEEVIAL 154
Query: 118 DK 119
++
Sbjct: 155 EE 156
>gi|182413044|ref|YP_001818110.1| DNA-directed RNA polymerase, omega subunit [Opitutus terrae
PB90-1]
gi|177840258|gb|ACB74510.1| DNA-directed RNA polymerase, omega subunit [Opitutus terrae
PB90-1]
Length = 89
Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTV-DVGKDKNTVVALREIASGTLSPD 61
+ + + +L+ + S R + L +G +P V + K ALREIA G +S +
Sbjct: 10 LTVIPDATILINVVSRRVKQLRRGNRPLVVSLEKLSAEDTALREIAEGKISYE 62
>gi|167758332|ref|ZP_02430459.1| hypothetical protein CLOSCI_00671 [Clostridium scindens ATCC
35704]
gi|167664229|gb|EDS08359.1| hypothetical protein CLOSCI_00671 [Clostridium scindens ATCC
35704]
Length = 70
Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 7 EDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGK-DKNTVVALREIASGTLSPDDLEE 65
E V++R+ +V+ + R R L GA P V +K +A+ E+ + EE
Sbjct: 10 EGATKVVNSRYSIVMATAKRARELIDGAMPLVAAKSGEKPLSIAINELNQAKIKVVGEEE 69
Query: 66 D 66
D
Sbjct: 70 D 70
>gi|312143918|ref|YP_003995364.1| DNA-directed RNA polymerase, omega subunit [Halanaerobium sp.
'sapolanicus']
gi|311904569|gb|ADQ15010.1| DNA-directed RNA polymerase, omega subunit [Halanaerobium sp.
'sapolanicus']
Length = 67
Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 7 EDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVV-ALREIASGTLSP 60
E +DK D+ + +++LAS R RHL+ G +D + K V +L EI +S
Sbjct: 8 EQLVDKADSLYTVIILASKRARHLNDGGYELLDEYRSKKVVSKSLEEIEKDKISY 62
>gi|315444653|ref|YP_004077532.1| DNA-directed RNA polymerase subunit omega [Mycobacterium sp.
Spyr1]
gi|315262956|gb|ADT99697.1| DNA-directed RNA polymerase, omega subunit [Mycobacterium sp.
Spyr1]
Length = 99
Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ +D+ +++ LV+ A+ R R ++ P V+ G ++K +A+REI
Sbjct: 29 IDELLDRASSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIAMREI 88
Query: 54 ASGTL 58
L
Sbjct: 89 HGDLL 93
>gi|251797749|ref|YP_003012480.1| DNA-directed RNA polymerase subunit omega [Paenibacillus sp.
JDR-2]
gi|247545375|gb|ACT02394.1| DNA-directed RNA polymerase, omega subunit [Paenibacillus sp.
JDR-2]
Length = 69
Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTLSPDD 62
+++ + KVD+++ LV+ AS R R L G K + K + V VAL EI + +
Sbjct: 6 IDEMVKKVDSKYSLVVAASRRARMLRNGEKSELRNPKSRKFVGVALEEIFHDIVIVEQ 63
>gi|327311662|ref|YP_004338559.1| DNA-directed RNA polymerase subunit K [Thermoproteus uzoniensis
768-20]
gi|326948141|gb|AEA13247.1| DNA-directed RNA polymerase subunit K [Thermoproteus uzoniensis
768-20]
Length = 112
Score = 39.5 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 16 RFLLVLLASHRTRHLSQGAKPTVDVGK--DKNTV-VALREIASGTLSPDDLEE 65
RF + + + R L+ GA+P VD+ K+ V +A+ E G L+ + +
Sbjct: 37 RFEVARVVAARALQLAMGAQPLVDINSLGTKDPVLIAMEEFRQGKLNFSIVRQ 89
>gi|297571425|ref|YP_003697199.1| DNA-directed RNA polymerase subunit omega [Arcanobacterium
haemolyticum DSM 20595]
gi|296931772|gb|ADH92580.1| DNA-directed RNA polymerase, omega subunit [Arcanobacterium
haemolyticum DSM 20595]
Length = 87
Score = 39.5 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 14/69 (20%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-------------PTV-DVGKDKNTVVALR 51
+++ ++KVD+++ L + + R R ++ + P V +DK VAL+
Sbjct: 16 IDNLLEKVDSKYTLAVFGAARARQINSYRQELKSGDGNITSIGPLVQSSPEDKPLSVALQ 75
Query: 52 EIASGTLSP 60
E+A L
Sbjct: 76 EVADDKLKF 84
>gi|255080520|ref|XP_002503840.1| predicted protein [Micromonas sp. RCC299]
gi|226519107|gb|ACO65098.1| predicted protein [Micromonas sp. RCC299]
Length = 4973
Score = 39.5 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 9/104 (8%)
Query: 26 RTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEEDFIHSLQKH-------VEID 78
R L++G DV D +V L ++A G + +ED + H E D
Sbjct: 143 RATPLTEGV-ALSDVSSD-VSVADLADVAEGAVEGAIEDEDATRPYRAHREAARVRAESD 200
Query: 79 EPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNIVTPDKRDD 122
P + E + ++ G + + + + + P R+D
Sbjct: 201 RPHATEEEDRVAQNEDGPPRGGARTMEEGMRALRTALEPSDRED 244
>gi|229541142|ref|ZP_04430202.1| DNA-directed RNA polymerase, omega subunit [Bacillus coagulans
36D1]
gi|229325562|gb|EEN91237.1| DNA-directed RNA polymerase, omega subunit [Bacillus coagulans
36D1]
Length = 68
Score = 39.5 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLSPD 61
+++ + +D+++ LV +A+ R R L + + DKN AL EI G L
Sbjct: 6 IDELLKIIDSKYSLVTIAAKRARQLQDEHNEVLEKYVSDKNVGKALEEIYVGVLRIK 62
>gi|299821747|ref|ZP_07053635.1| DNA-directed RNA polymerase subunit omega [Listeria grayi DSM
20601]
gi|299817412|gb|EFI84648.1| DNA-directed RNA polymerase subunit omega [Listeria grayi DSM
20601]
Length = 67
Score = 39.5 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK--PTVDVGKDKNTVVALREIASGTLSPDD 62
+++ + K+D+++ LV +A+ R R + Q DK AL EI SG L +
Sbjct: 7 IDNLLLKIDSKYSLVTVAAKRARQMQQDNDNGTLESYQSDKYVGKALEEIYSGNLVLSE 65
>gi|145224321|ref|YP_001134999.1| DNA-directed RNA polymerase subunit omega [Mycobacterium gilvum
PYR-GCK]
gi|145216807|gb|ABP46211.1| DNA-directed RNA polymerase, omega subunit [Mycobacterium gilvum
PYR-GCK]
Length = 107
Score = 39.5 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ +D+ +++ LV+ A+ R R ++ P V+ G ++K +A+REI
Sbjct: 37 IDELLDRASSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIAMREI 96
Query: 54 ASGTL 58
L
Sbjct: 97 HGDLL 101
>gi|120403652|ref|YP_953481.1| DNA-directed RNA polymerase subunit omega [Mycobacterium
vanbaalenii PYR-1]
gi|166230335|sp|A1T8H5|RPOZ_MYCVP RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|119956470|gb|ABM13475.1| DNA-directed RNA polymerase, omega subunit [Mycobacterium
vanbaalenii PYR-1]
Length = 104
Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ +D+ +++ LV+ A+ R R ++ P V+ G ++K +A+REI
Sbjct: 34 IDELLDRASSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIAMREI 93
Query: 54 ASGTL 58
L
Sbjct: 94 HGDLL 98
>gi|317496578|ref|ZP_07954927.1| RNA polymerase Rpb6 [Gemella moribillum M424]
gi|316913381|gb|EFV34878.1| RNA polymerase Rpb6 [Gemella moribillum M424]
Length = 65
Score = 39.5 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 12 KVDNRFLLVLLASHRTRHL--SQGAKPTVDVGKDKNTVVALREIASGTLSP 60
KV+++++LV LAS R R L + K AL EIA G +S
Sbjct: 12 KVNSKYMLVSLASKRARELFANPDTAKLEKYTSHKEVGKALEEIAEGKISV 62
>gi|317500460|ref|ZP_07958684.1| DNA-directed RNA polymerase [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089439|ref|ZP_08338338.1| DNA-directed RNA polymerase [Lachnospiraceae bacterium 3_1_46FAA]
gi|316898215|gb|EFV20262.1| DNA-directed RNA polymerase [Lachnospiraceae bacterium 8_1_57FAA]
gi|330404807|gb|EGG84345.1| DNA-directed RNA polymerase [Lachnospiraceae bacterium 3_1_46FAA]
Length = 82
Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSPD 61
V++R+ +V+ S R R L G P VD +K +A+ E+ G L
Sbjct: 23 KIVNSRYSIVMATSKRARQLIAGDLPLVDVKEGEKPLSIAIEELNKGELKIK 74
>gi|323486990|ref|ZP_08092304.1| DNA-directed RNA polymerase [Clostridium symbiosum WAL-14163]
gi|323692034|ref|ZP_08106282.1| DNA-directed RNA polymerase [Clostridium symbiosum WAL-14673]
gi|323399702|gb|EGA92086.1| DNA-directed RNA polymerase [Clostridium symbiosum WAL-14163]
gi|323503957|gb|EGB19771.1| DNA-directed RNA polymerase [Clostridium symbiosum WAL-14673]
Length = 86
Score = 39.1 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
+ +R+ +V+ + R R L G + V K +A+ E+ +
Sbjct: 26 IQSRYSIVIATAKRARQLIAGEESAVPADARKPLSIAIDELYQSKVKI 73
>gi|289551008|ref|YP_003471912.1| DNA-directed RNA polymerase omega subunit [Staphylococcus
lugdunensis HKU09-01]
gi|315658503|ref|ZP_07911375.1| DNA-directed RNA polymerase subunit omega [Staphylococcus
lugdunensis M23590]
gi|289180540|gb|ADC87785.1| DNA-directed RNA polymerase omega subunit [Staphylococcus
lugdunensis HKU09-01]
gi|315496832|gb|EFU85155.1| DNA-directed RNA polymerase subunit omega [Staphylococcus
lugdunensis M23590]
Length = 70
Score = 39.1 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 12 KVDNRFLLVLLASHRTRHLSQGA--KPTVDVGKDKNTVVALREIASGTLSPDD 62
K+++++L+ A+ R R L + A + K AL EIASG + P+
Sbjct: 12 KINSKYLIATTAAKRARELDEKANTALLANYHSAKPVGKALEEIASGKIVPEI 64
>gi|291522726|emb|CBK81019.1| DNA-directed RNA polymerase, omega subunit [Coprococcus catus GD/7]
Length = 142
Score = 39.1 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEEDFIHSLQ 72
V +R+ +V+ A+ R R + GA+ V K+K + +++ ++L + + L
Sbjct: 25 VSSRYSIVIAAAKRARQIIAGAESAVPDYKNKKPL---------SVAVEELMDGDVKILS 75
Query: 73 KHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDL 107
+ D+ D + + + E ++
Sbjct: 76 SGEDADDEDDKPSIGGDVYDIALDVDDEDIFEDEM 110
>gi|227872688|ref|ZP_03991018.1| DNA-directed RNA polymerase [Oribacterium sinus F0268]
gi|227841502|gb|EEJ51802.1| DNA-directed RNA polymerase [Oribacterium sinus F0268]
Length = 140
Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 12 KVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTLSPD 61
+V +R+ +V+ ++ R R L G +P + + K + +A+ EI+ ++ +
Sbjct: 23 EVQSRYSVVIASAKRARQLIDGEEPLIKGEEGKKPLSMAIEEISRNLVNVE 73
>gi|225570521|ref|ZP_03779546.1| hypothetical protein CLOHYLEM_06623 [Clostridium hylemonae DSM
15053]
gi|225160718|gb|EEG73337.1| hypothetical protein CLOHYLEM_06623 [Clostridium hylemonae DSM
15053]
Length = 71
Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTV-DVGKDKNTVVALREIASGTLSP 60
V++R+ +V+ + R R + G+ P V +K VA+ E+ G ++
Sbjct: 14 KVVNSRYSIVMATAKRAREIIDGSMPLVHAKDGEKPLSVAIDELNCGKITV 64
>gi|154497978|ref|ZP_02036356.1| hypothetical protein BACCAP_01958 [Bacteroides capillosus ATCC
29799]
gi|150272968|gb|EDN00125.1| hypothetical protein BACCAP_01958 [Bacteroides capillosus ATCC
29799]
Length = 67
Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEED 66
+ +V +R++LV + + R R ++ A+ +DK +AL+E+A G +P +E+
Sbjct: 11 LAQVPSRYMLVNVVAQRARQIASEAEEEGISLEDKPVTLALQEVAEGKYAPQVADEE 67
>gi|329767572|ref|ZP_08259093.1| DNA-directed RNA polymerase subunit omega [Gemella haemolysans
M341]
gi|328839199|gb|EGF88783.1| DNA-directed RNA polymerase subunit omega [Gemella haemolysans
M341]
Length = 65
Score = 39.1 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 12 KVDNRFLLVLLASHRTRH-LSQGAKPTVDV-GKDKNTVVALREIASGTLSP 60
KV+++++LV LAS R R + +D K AL EIA G +S
Sbjct: 12 KVNSKYMLVSLASKRARELFANPETAKLDKYTSHKEVGKALEEIAEGKISV 62
>gi|229826163|ref|ZP_04452232.1| hypothetical protein GCWU000182_01535 [Abiotrophia defectiva ATCC
49176]
gi|229789033|gb|EEP25147.1| hypothetical protein GCWU000182_01535 [Abiotrophia defectiva ATCC
49176]
Length = 84
Score = 39.1 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDVG-KDKNTVVALREIASGTLSP 60
V++R+ +VL + R R + G++P V K K VA+ E+ +
Sbjct: 24 KLVNSRYSIVLATARRARQIISGSEPYVAADEKSKPLSVAVDELYHEKVKI 74
>gi|118467362|ref|YP_887369.1| DNA-directed RNA polymerase subunit omega [Mycobacterium smegmatis
str. MC2 155]
gi|166230333|sp|A0QWT1|RPOZ_MYCS2 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
omega subunit; AltName: Full=RNA polymerase omega
subunit; AltName: Full=Transcriptase subunit omega
gi|62546333|gb|AAX86043.1| DNA-directed RNA polymerase omega subunit [Mycobacterium smegmatis]
gi|118168649|gb|ABK69545.1| DNA-directed RNA polymerase, omega subunit [Mycobacterium smegmatis
str. MC2 155]
Length = 107
Score = 39.1 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ + + +++ LV+ A+ R R ++ P V+ G ++K +ALREI
Sbjct: 37 IDELLSRASSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREI 96
Query: 54 ASGTL 58
L
Sbjct: 97 HGDLL 101
>gi|291538906|emb|CBL12017.1| RNA polymerase Rpb6 [Roseburia intestinalis XB6B4]
Length = 71
Score = 38.7 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVGK 42
V++R+ +V+ A+ R R + G +P + K
Sbjct: 33 VNSRYSIVIAAAKRARQIIAGDEPMAERKK 62
>gi|28493329|ref|NP_787490.1| DNA-directed RNA polymerase subunit omega [Tropheryma whipplei
str. Twist]
gi|41688660|sp|Q820D5|RPOZ_TROWT RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|28476370|gb|AAO44459.1| DNA-directed RNA polymerase omega chain [Tropheryma whipplei str.
Twist]
Length = 98
Score = 38.7 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 10 IDKVDNRFLLVLLASHRTRHL-------SQGA-----KPTVDVG-KDKNTVVALREIASG 56
+ + +++ LV+ A+ R R + +G+ P V V DK+ VA+REIA
Sbjct: 29 LSRSGSKYGLVIYAAKRARQIDQYYIDLHEGSFYAHVGPLVSVDADDKSLTVAMREIAED 88
Query: 57 TLSPD 61
L
Sbjct: 89 KLDLK 93
>gi|224417657|ref|ZP_03655663.1| DNA-directed RNA polymerase subunit omega [Helicobacter
canadensis MIT 98-5491]
gi|253827008|ref|ZP_04869893.1| DNA-directed RNA polymerase omega subunit [Helicobacter
canadensis MIT 98-5491]
gi|313141202|ref|ZP_07803395.1| DNA-directed RNA polymerase subunit omega [Helicobacter
canadensis MIT 98-5491]
gi|253510414|gb|EES89073.1| DNA-directed RNA polymerase omega subunit [Helicobacter
canadensis MIT 98-5491]
gi|313130233|gb|EFR47850.1| DNA-directed RNA polymerase subunit omega [Helicobacter
canadensis MIT 98-5491]
Length = 72
Score = 38.7 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 10 IDKVD-NRFLLVLLASHRTRHLSQGAKPTVD--VGKDKNTVVALREIASGTLSPDDLEED 66
++KV+ +R+LL + R LS+GAKP V+ DK + +AL EIA G + + +EE
Sbjct: 11 LEKVNFDRYLLSNIIFARIDELSRGAKPLVNKNPKVDKLSDIALLEIAEGKIGLERVEEA 70
>gi|283458041|ref|YP_003362651.1| DNA-directed RNA polymerase, subunit K/omega [Rothia mucilaginosa
DY-18]
gi|283134066|dbj|BAI64831.1| DNA-directed RNA polymerase, subunit K/omega [Rothia mucilaginosa
DY-18]
Length = 166
Score = 38.7 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 22/123 (17%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREIASGT 57
I+K ++++ LV+ + R R ++ P VD +K+ VA+REI +
Sbjct: 45 IEKAESKYGLVIFGARRARQINAYYANLQDNTAAHVGPLVDAESNEKSLSVAMREIIADR 104
Query: 58 LSPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSF-GQMSEGDLLEGINNIVT 116
+ + + + DE P + A F G + E + G ++
Sbjct: 105 V---------VAEHRPDAKFDEDGYPIPEDLSAVIDFSAAEFSGAIEEEYIPAGSEEVIA 155
Query: 117 PDK 119
++
Sbjct: 156 IEE 158
>gi|227875408|ref|ZP_03993549.1| DNA-directed RNA polymerase subunit omega [Mobiluncus mulieris
ATCC 35243]
gi|306818721|ref|ZP_07452443.1| DNA-directed RNA polymerase subunit omega [Mobiluncus mulieris
ATCC 35239]
gi|307700877|ref|ZP_07637902.1| DNA-directed RNA polymerase, omega subunit [Mobiluncus mulieris
FB024-16]
gi|227843962|gb|EEJ54130.1| DNA-directed RNA polymerase subunit omega [Mobiluncus mulieris
ATCC 35243]
gi|304648407|gb|EFM45710.1| DNA-directed RNA polymerase subunit omega [Mobiluncus mulieris
ATCC 35239]
gi|307613872|gb|EFN93116.1| DNA-directed RNA polymerase, omega subunit [Mobiluncus mulieris
FB024-16]
Length = 100
Score = 38.7 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVD-VGKDKNTVVALREI 53
+++ ++ VD+++ LV ++ R R ++ + P VD +K +A+ EI
Sbjct: 16 IDELLEHVDSKYALVAFSAARARQINAYNQQLEAGLLDTIGPLVDHTPHEKALSIAMHEI 75
Query: 54 ASGTLSPD 61
+ G L
Sbjct: 76 SQGMLDMK 83
>gi|126649679|ref|ZP_01721915.1| DNA-directed RNA polymerase, omega subunit [Bacillus sp. B14905]
gi|169827059|ref|YP_001697217.1| hypothetical protein Bsph_1485 [Lysinibacillus sphaericus C3-41]
gi|226703149|sp|B1HQE0|RPOZ_LYSSC RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|126593398|gb|EAZ87343.1| DNA-directed RNA polymerase, omega subunit [Bacillus sp. B14905]
gi|168991547|gb|ACA39087.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
Length = 75
Score = 38.7 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 8 DCIDK-VDNRFLLVLLASHRTRHLSQ--GAKPTVDVGKDKNTVVALREIASGTLSPDDLE 64
D + K +D+++ LV LAS R R + + + K AL E+A+G L+ +
Sbjct: 7 DALKKEIDSKYSLVSLASKRARQMQEEQNTERLHKYVSHKYVGKALEEVAAGVLTKVSQD 66
Query: 65 EDFIHS 70
E ++
Sbjct: 67 ESTVYE 72
>gi|241889448|ref|ZP_04776749.1| DNA-directed RNA polymerase, omega subunit [Gemella haemolysans
ATCC 10379]
gi|241863991|gb|EER68372.1| DNA-directed RNA polymerase, omega subunit [Gemella haemolysans
ATCC 10379]
Length = 65
Score = 38.7 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 12 KVDNRFLLVLLASHRTRHLSQGAKP--TVDVGKDKNTVVALREIASGTLSP 60
KV+++++LV LAS R R L + K AL EIA G +S
Sbjct: 12 KVNSKYMLVSLASKRARELFANPETSKLDKYTSHKEVGKALEEIAEGKISV 62
>gi|269977338|ref|ZP_06184311.1| DNA-directed RNA polymerase, omega subunit [Mobiluncus mulieris
28-1]
gi|269934641|gb|EEZ91202.1| DNA-directed RNA polymerase, omega subunit [Mobiluncus mulieris
28-1]
Length = 100
Score = 38.7 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVD-VGKDKNTVVALREI 53
+++ ++ VD+++ LV ++ R R ++ + P VD +K +A+ EI
Sbjct: 16 IDELLEHVDSKYALVAFSAARARQINAYNQQLEAGLLDTIGPLVDYTPHEKALSIAMHEI 75
Query: 54 ASGTLSPD 61
+ G L
Sbjct: 76 SQGMLDMK 83
>gi|288818308|ref|YP_003432656.1| DNA-directed RNA polymerase omega subunit [Hydrogenobacter
thermophilus TK-6]
gi|288787708|dbj|BAI69455.1| DNA-directed RNA polymerase omega subunit [Hydrogenobacter
thermophilus TK-6]
gi|308751905|gb|ADO45388.1| DNA-directed RNA polymerase, omega subunit [Hydrogenobacter
thermophilus TK-6]
Length = 75
Score = 38.7 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 3 RTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----PTVDVGKDKNTVVALREIASGT 57
R +E + V +R+ LV A+ R L Q + V K T A+ +IA+G
Sbjct: 4 RPNIETALKLVSSRYELVHAAAKRVEQLMQQGEDIFLRDKVKGELVKKTFQAIEDIANGK 63
Query: 58 LSP 60
+
Sbjct: 64 VRI 66
>gi|34556680|ref|NP_906495.1| DNA-directed RNA polymerase subunit omega [Wolinella succinogenes
DSM 1740]
gi|41688625|sp|Q7MSQ0|RPOZ_WOLSU RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|34482394|emb|CAE09395.1| hypothetical protein WS0239 [Wolinella succinogenes]
Length = 71
Score = 38.7 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 10 IDKVDN-RFLLVLLASHRTRHLSQGAKPTV--DVGKDKNTVVALREIASGTLSPDDLEE 65
+++V+N R+LL + R LS+GAKP V DV K K T +A+ E+A G ++ +++
Sbjct: 12 LNRVNNDRYLLANILFARIDELSKGAKPLVNMDVKKHKLTDIAMTEVAEGKIALSQIDQ 70
>gi|300741561|ref|ZP_07071582.1| DNA-directed RNA polymerase, omega subunit [Rothia dentocariosa
M567]
gi|300380746|gb|EFJ77308.1| DNA-directed RNA polymerase, omega subunit [Rothia dentocariosa
M567]
Length = 150
Score = 38.7 bits (89), Expect = 0.27, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 22/122 (18%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREIASGT 57
I K ++++ LV+ + R R ++ P V+ DK VA+REI +
Sbjct: 31 IQKAESKYGLVIFGARRARQINAYYANLQESAGDHVGPLVESEANDKALSVAMREIMADQ 90
Query: 58 LSPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNIVTP 117
+ D + + H D P E + + FG + E + G ++
Sbjct: 91 IVADHVPDG-------HFNEDGYLVPEEFASLGLGDAD---FGAIEEEYIPAGTEEVIAL 140
Query: 118 DK 119
++
Sbjct: 141 EE 142
>gi|223043730|ref|ZP_03613773.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus
capitis SK14]
gi|314933385|ref|ZP_07840750.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus caprae
C87]
gi|222442827|gb|EEE48929.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus
capitis SK14]
gi|313653535|gb|EFS17292.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus caprae
C87]
Length = 70
Score = 38.7 bits (89), Expect = 0.28, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 12 KVDNRFLLVLLASHRTRHLSQGAK-PTVDVGKDKNTV-VALREIASGTLSPDDLEEDF 67
K+++++L+ A+ R R L + + ++ V AL EIA G + P EE
Sbjct: 12 KINSKYLIATTAAKRARELDEKHETALIENYHSAKPVGRALEEIADGKIEPVIPEEYL 69
>gi|319892203|ref|YP_004149078.1| DNA-directed RNA polymerase omega subunit [Staphylococcus
pseudintermedius HKU10-03]
gi|317161899|gb|ADV05442.1| DNA-directed RNA polymerase omega subunit [Staphylococcus
pseudintermedius HKU10-03]
gi|323464696|gb|ADX76849.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus
pseudintermedius ED99]
Length = 69
Score = 38.7 bits (89), Expect = 0.28, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKP---TVDVGKDKNTV-VALREIASGTLSPD 61
DK+++++L+ A+ R R L A P +D + K TV AL EIA+ + P
Sbjct: 11 DKINSKYLIATTAAKRARELQ--ADPDHLLLDRYESKKTVGRALEEIAASKIHPH 63
>gi|154483627|ref|ZP_02026075.1| hypothetical protein EUBVEN_01331 [Eubacterium ventriosum ATCC
27560]
gi|149735537|gb|EDM51423.1| hypothetical protein EUBVEN_01331 [Eubacterium ventriosum ATCC
27560]
Length = 71
Score = 38.7 bits (89), Expect = 0.28, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTLSP 60
V +R+ +V+ S R R + G P V+ + K + +A+ E+ + +
Sbjct: 16 VQSRYSIVMATSKRARQIIAGDAPLVEKAEGKKPLSIAVEELYNSKIKI 64
>gi|28572560|ref|NP_789340.1| DNA-directed RNA polymerase subunit omega [Tropheryma whipplei
TW08/27]
gi|41688661|sp|Q820D7|RPOZ_TROW8 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|28410692|emb|CAD67078.1| DNA-directed RNA polymerase omega chain [Tropheryma whipplei
TW08/27]
Length = 85
Score = 38.7 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 10 IDKVDNRFLLVLLASHRTRHL-------SQGA-----KPTVDVG-KDKNTVVALREIASG 56
+ + +++ LV+ A+ R R + +G+ P V V DK+ VA+REIA
Sbjct: 16 LSRSGSKYGLVIYAAKRARQIDQYYIDLHEGSFYAHVGPLVSVDADDKSLTVAMREIAED 75
Query: 57 TLSPD 61
L
Sbjct: 76 KLDLK 80
>gi|329768832|ref|ZP_08260261.1| RNA polymerase K/14 to 18 kDa subunit [Gemella sanguinis M325]
gi|328838225|gb|EGF87838.1| RNA polymerase K/14 to 18 kDa subunit [Gemella sanguinis M325]
Length = 65
Score = 38.7 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 12 KVDNRFLLVLLASHRTRHLSQGAKP--TVDVGKDKNTVVALREIASGTLSP 60
KV+++++LV LAS R R L + + K AL EIA G +S
Sbjct: 12 KVNSKYMLVSLASKRARELFSDPETKKLDNYVSHKEVGKALEEIAEGKVSV 62
>gi|304440683|ref|ZP_07400567.1| DNA-directed RNA polymerase subunit omega [Peptoniphilus
duerdenii ATCC BAA-1640]
gi|304370870|gb|EFM24492.1| DNA-directed RNA polymerase subunit omega [Peptoniphilus
duerdenii ATCC BAA-1640]
Length = 109
Score = 38.3 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTL 58
D+R+ LV+L S R R + G +P + K +AL E+ G +
Sbjct: 11 KVTDSRYKLVMLVSKRARKIVDGNEPLEETELQKPVSIALDEVVKGDI 58
>gi|242373497|ref|ZP_04819071.1| DNA-directed RNA polymerase subunit omega [Staphylococcus
epidermidis M23864:W1]
gi|242348860|gb|EES40462.1| DNA-directed RNA polymerase subunit omega [Staphylococcus
epidermidis M23864:W1]
Length = 70
Score = 38.3 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 12 KVDNRFLLVLLASHRTRHLSQGAK-PTVDVGKDKNTV-VALREIASGTLSPDDLEEDF 67
K+++++L+ A+ R R L + + ++ V AL EIA G + P EE
Sbjct: 12 KINSKYLIATTAAKRARELDEKHETALLENYHSAKPVGRALEEIADGKIVPVIPEEYL 69
>gi|225157630|ref|ZP_03725020.1| DNA-directed RNA polymerase, omega subunit [Opitutaceae bacterium
TAV2]
gi|224802697|gb|EEG20950.1| DNA-directed RNA polymerase, omega subunit [Opitutaceae bacterium
TAV2]
Length = 65
Score = 38.3 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLSPD 61
+ + LL+ + S R + L +G +P V+ K +ALRE+ G ++ +
Sbjct: 11 KVITDPNLLINVVSRRVKQLRRGHRPLVESLEKLAPEDIALREVIEGKITYE 62
>gi|169629906|ref|YP_001703555.1| DNA-directed RNA polymerase omega subunit [Mycobacterium
abscessus ATCC 19977]
gi|169241873|emb|CAM62901.1| DNA-directed RNA polymerase omega subunit [Mycobacterium
abscessus]
Length = 102
Score = 38.3 bits (88), Expect = 0.36, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ + + +++ LV+ A+ R R ++ P V+ G ++K +ALREI
Sbjct: 32 IDELLARASSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREI 91
Query: 54 ASGTL 58
L
Sbjct: 92 HGDLL 96
>gi|307720658|ref|YP_003891798.1| RNA polymerase Rpb6 [Sulfurimonas autotrophica DSM 16294]
gi|306978751|gb|ADN08786.1| RNA polymerase Rpb6 [Sulfurimonas autotrophica DSM 16294]
Length = 73
Score = 38.3 bits (88), Expect = 0.37, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 15 NRFLLVLLASHRTRHLSQGAKPT--VDVGKDKNTVVALREIASGTLSPDDLEE 65
+R+ L + + R L GA V+ K+ +AL EIA G ++ +
Sbjct: 18 DRYQLAIAVAKRCDELENGAPSKLNVNTSNIKSADLALMEIAEGLITVKGFTD 70
>gi|288553117|ref|YP_003425052.1| DNA-directed RNA polymerase subunit omega [Bacillus pseudofirmus
OF4]
gi|288544277|gb|ADC48160.1| DNA-directed RNA polymerase subunit omega [Bacillus pseudofirmus
OF4]
Length = 72
Score = 38.3 bits (88), Expect = 0.37, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK--PTVDVGK-DKNTVVALREIASGTLSPDD 62
++ +DK+D+++ LV +++ R R + + + P V+ K K +AL EI L +
Sbjct: 6 IDSLMDKLDSKYTLVTVSAKRAREIREDSSRGPLVNRPKAHKPVGMALEEIVEEHLRFER 65
Query: 63 LE 64
+
Sbjct: 66 IT 67
>gi|313682976|ref|YP_004060714.1| DNA-directed RNA polymerase, omega subunit [Sulfuricurvum
kujiense DSM 16994]
gi|313155836|gb|ADR34514.1| DNA-directed RNA polymerase, omega subunit [Sulfuricurvum
kujiense DSM 16994]
Length = 71
Score = 38.3 bits (88), Expect = 0.39, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 15 NRFLLVLLASHRTRHLSQGAKPT--VDVGKDKNTVVALREIASGTLSPD 61
+R+ L + + R+ L GA VDV K K +AL EIA G ++
Sbjct: 17 DRYQLAIAVAKRSEELLNGATTKLNVDVKKAKTADIALMEIAEGHITVK 65
>gi|172040653|ref|YP_001800367.1| DNA-directed RNA polymerase subunit omega [Corynebacterium
urealyticum DSM 7109]
gi|226703114|sp|B1VDN5|RPOZ_CORU7 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|171851957|emb|CAQ04933.1| DNA-directed RNA polymerase, omega subunit [Corynebacterium
urealyticum DSM 7109]
Length = 93
Score = 38.3 bits (88), Expect = 0.40, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
+++ + KV +++ L + A+ R R ++ + P V +K +ALREI
Sbjct: 24 IDELLTKVSSKYALAIFAAKRARQINDYFQSIDEGVLEFVGPLVTPEMHEKPLSIALREI 83
Query: 54 ASGTL 58
+ L
Sbjct: 84 NADLL 88
>gi|169824355|ref|YP_001691966.1| putative DNA-directed RNA polymerase subunit omega [Finegoldia
magna ATCC 29328]
gi|302380615|ref|ZP_07269080.1| DNA-directed RNA polymerase, omega subunit [Finegoldia magna
ACS-171-V-Col3]
gi|303233901|ref|ZP_07320550.1| DNA-directed RNA polymerase, omega subunit [Finegoldia magna
BVS033A4]
gi|226703135|sp|B0S136|RPOZ_FINM2 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|167831160|dbj|BAG08076.1| putative DNA-directed RNA polymerase omega subunit [Finegoldia
magna ATCC 29328]
gi|302311558|gb|EFK93574.1| DNA-directed RNA polymerase, omega subunit [Finegoldia magna
ACS-171-V-Col3]
gi|302494826|gb|EFL54583.1| DNA-directed RNA polymerase, omega subunit [Finegoldia magna
BVS033A4]
Length = 65
Score = 37.9 bits (87), Expect = 0.40, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 14 DNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTL 58
++R+ L ++ S R R L G + + K + AL E+ +
Sbjct: 14 NSRYALCVMVSKRARMLIDGKETKLKKAKAQPVTTALEEVMEKKV 58
>gi|87311822|ref|ZP_01093936.1| hypothetical protein DSM3645_04605 [Blastopirellula marina DSM
3645]
gi|87285496|gb|EAQ77416.1| hypothetical protein DSM3645_04605 [Blastopirellula marina DSM
3645]
Length = 85
Score = 37.9 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEEDFI 68
I+KV RF L L R L+ G++P V + + + L EI + D E I
Sbjct: 10 INKVGGRFKLSTLIQKRLVALNAGSRPLVTIASENKMEIVLEEIKQDKIHLDMSNEVRI 68
>gi|297588333|ref|ZP_06946976.1| DNA-directed RNA polymerase subunit omega [Finegoldia magna ATCC
53516]
gi|297573706|gb|EFH92427.1| DNA-directed RNA polymerase subunit omega [Finegoldia magna ATCC
53516]
Length = 65
Score = 37.9 bits (87), Expect = 0.42, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 14 DNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTL 58
++R+ L ++ S R R L G + + K + AL E+ +
Sbjct: 14 NSRYALCVMVSKRARMLIDGKETKLKKAKAQPVTTALEEVMEKKV 58
>gi|299535916|ref|ZP_07049236.1| hypothetical protein BFZC1_07830 [Lysinibacillus fusiformis ZC1]
gi|298728668|gb|EFI69223.1| hypothetical protein BFZC1_07830 [Lysinibacillus fusiformis ZC1]
Length = 75
Score = 37.9 bits (87), Expect = 0.43, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 8 DCIDK-VDNRFLLVLLASHRTRHLSQ--GAKPTVDVGKDKNTVVALREIASGTLSPDDLE 64
D + K +D+++ LV LAS R R + + + K AL E+A+G L+ +
Sbjct: 7 DALKKEIDSKYSLVSLASKRARQMQEEQDTERLHKYVSHKYVGKALEEVAAGVLTKVSQD 66
Query: 65 EDFIHS 70
E ++
Sbjct: 67 ESTVYE 72
>gi|242309162|ref|ZP_04808317.1| DNA-directed RNA polymerase subunit omega [Helicobacter pullorum
MIT 98-5489]
gi|239524203|gb|EEQ64069.1| DNA-directed RNA polymerase subunit omega [Helicobacter pullorum
MIT 98-5489]
Length = 72
Score = 37.9 bits (87), Expect = 0.44, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 10 IDKVD-NRFLLVLLASHRTRHLSQGAKPTVDV--GKDKNTVVALREIASGTLSPDDLEE 65
++KV+ +R+LL + R LS+GAKP V+ DK +AL E+A G + + +E+
Sbjct: 11 LEKVNFDRYLLSNILFARIDELSRGAKPLVNKNVKTDKLADIALLEVAEGKIGLEKVED 69
>gi|163785820|ref|ZP_02180301.1| RNA polymerase omega subunit [Hydrogenivirga sp. 128-5-R1-1]
gi|159878911|gb|EDP72934.1| RNA polymerase omega subunit [Hydrogenivirga sp. 128-5-R1-1]
Length = 75
Score = 37.9 bits (87), Expect = 0.45, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 7 EDCIDKVDNRFLLVLLASHRT-RHLSQGAKPTVDVGKD--KNTVVALREIASG 56
E+ + KV+NR+ LV A+ R GA+ V+ K TV+++ +IA G
Sbjct: 8 EEALKKVNNRYELVHAAAKLAKRLYETGAESFVNEEGIPLKKTVISIDKIAKG 60
>gi|308177488|ref|YP_003916894.1| DNA-directed RNA polymerase omega chain [Arthrobacter
arilaitensis Re117]
gi|307744951|emb|CBT75923.1| DNA-directed RNA polymerase omega chain [Arthrobacter
arilaitensis Re117]
Length = 86
Score = 37.9 bits (87), Expect = 0.47, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 14/75 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREI 53
++ ++ D+++ +VL ++ R R ++ P V+ +K +ALRE+
Sbjct: 12 IDSLLETNDSKYAIVLNSAKRARQINAYYAQLNEGLFEYVGPLVETKLNEKPLTIALREL 71
Query: 54 ASG--TLSPDDLEED 66
++P ++ ED
Sbjct: 72 DDSLLKVTPAEVIED 86
>gi|218462438|ref|ZP_03502529.1| hypothetical protein RetlK5_24543 [Rhizobium etli Kim 5]
Length = 116
Score = 37.9 bits (87), Expect = 0.49, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEE 65
V DC + NRF L + A+ R+R L++GA+P +++ + +AL EIA + PD+L
Sbjct: 6 VFDCERVLANRFALAVAAAARSRSLNRGAEPRLEMPGATASEIALTEIAQRSFLPDELAL 65
Query: 66 DFIH 69
I
Sbjct: 66 FLIE 69
>gi|89098710|ref|ZP_01171592.1| DNA-directed RNA polymerase omega subunit [Bacillus sp. NRRL
B-14911]
gi|89086672|gb|EAR65791.1| DNA-directed RNA polymerase omega subunit [Bacillus sp. NRRL
B-14911]
Length = 77
Score = 37.9 bits (87), Expect = 0.49, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTL 58
++ + K+D+++ LV +A+ R R L AKP +D KN AL EI + L
Sbjct: 10 IDSLMTKIDSKYSLVSVAAKRARKLQIDAKPQLDKYVSHKNVGKALEEIHADEL 63
>gi|291561026|emb|CBL39826.1| DNA-directed RNA polymerase, omega subunit [butyrate-producing
bacterium SSC/2]
Length = 80
Score = 37.5 bits (86), Expect = 0.53, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLSP 60
+ +R+ +VL ++ R R + G P V+ K A+ E+ +
Sbjct: 21 KVISSRYSIVLASAKRARQIIAGDMPLVEEKDGAKPLSTAVEELWEEKVKI 71
>gi|218515452|ref|ZP_03512292.1| DNA-directed RNA polymerase subunit omega [Rhizobium etli 8C-3]
Length = 60
Score = 37.5 bits (86), Expect = 0.54, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 11/59 (18%)
Query: 75 VEIDEPDSP-----------TENSDFSWHKPEALSFGQMSEGDLLEGINNIVTPDKRDD 122
VE+DEP+ +S+ PE ++F QMSE +LL GI +V P+K DD
Sbjct: 1 VEVDEPEPDPASMIAAGGVAAADSEEQDDLPETITFDQMSEEELLAGIEGLVPPEKSDD 59
>gi|15605753|ref|NP_213130.1| RNA polymerase omega subunit [Aquifex aeolicus VF5]
gi|13959459|sp|O66570|RPOZ_AQUAE RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|2982918|gb|AAC06536.1| RNA polymerase omega subunit [Aquifex aeolicus VF5]
Length = 76
Score = 37.5 bits (86), Expect = 0.56, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 3 RTTVEDCIDKVDNRFLLVLLASHRTRH-LSQGAKPTVDV--GKDKNTVVALREIASG 56
R +E+ + +V++R+ LV A RT L +G V K T A+ +IA G
Sbjct: 4 RPKIEEAMKRVESRYELVHAAVRRTLQLLREGEDFFVQEGGEVHKKTFAAIEDIAEG 60
>gi|85703536|ref|ZP_01034640.1| putative magnesium chelatase subunit BchD [Roseovarius sp. 217]
gi|85672464|gb|EAQ27321.1| putative magnesium chelatase subunit BchD [Roseovarius sp. 217]
Length = 552
Score = 37.5 bits (86), Expect = 0.59, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 56 GTLSPDDLEE--DFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINN 113
GT++ DDL E + ++ + EP+ + + + + LLE +
Sbjct: 216 GTVTQDDLREAAELVYPSRATQLPQEPEDERPDETPDPEDQSSADTPDIPDEVLLEAVAA 275
Query: 114 IVTPD 118
++ P
Sbjct: 276 LLPPA 280
>gi|256028502|ref|ZP_05442336.1| DNA-directed RNA polymerase omega chain [Fusobacterium sp. D11]
gi|260495672|ref|ZP_05815795.1| DNA-directed RNA polymerase, omega subunit [Fusobacterium sp.
3_1_33]
gi|260196737|gb|EEW94261.1| DNA-directed RNA polymerase, omega subunit [Fusobacterium sp.
3_1_33]
Length = 73
Score = 37.5 bits (86), Expect = 0.59, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 4 TTVEDCIDKVDNRFLLVLLASHRTRH-----LSQGAKPTVDVGKDKNTV---VALREIAS 55
T ++ + K+ N+++L ++A R R + +G +P DK +EI +
Sbjct: 5 ITYDELLAKIPNKYILTIIAGERARERAKERMERGGEPLPLTKYDKKDTEMKKVFKEILA 64
Query: 56 GTLSPDD 62
G +S +D
Sbjct: 65 GKVSYED 71
>gi|260584740|ref|ZP_05852486.1| DNA-directed RNA polymerase, omega subunit [Granulicatella
elegans ATCC 700633]
gi|260157763|gb|EEW92833.1| DNA-directed RNA polymerase, omega subunit [Granulicatella
elegans ATCC 700633]
Length = 71
Score = 37.5 bits (86), Expect = 0.65, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-PTVDVGKDKNTVVALREIASGTLSPDD 62
++ ++K+D+++ LV+L+S R L D DKN AL E+ +G L +
Sbjct: 7 IDKLLNKIDSKYSLVILSSKRAHELHHHEPQKLEDYQSDKNVGRALEEVIAGELGIRE 64
>gi|289811116|ref|ZP_06541745.1| DNA-directed RNA polymerase subunit omega [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
Length = 62
Score = 37.1 bits (85), Expect = 0.71, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 33 GAKPTVDVGKDKNTVVALREIASGTLSPDDLE 64
G P V DK TV+ALREI G ++ L+
Sbjct: 5 GKDPLVPEENDKTTVIALREIEEGLINNQILD 36
>gi|302037776|ref|YP_003798098.1| DNA-directed RNA polymerase subunit omega [Candidatus Nitrospira
defluvii]
gi|300605840|emb|CBK42173.1| DNA-directed RNA polymerase, omega subunit (modular protein)
[Candidatus Nitrospira defluvii]
Length = 120
Score = 37.1 bits (85), Expect = 0.72, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
Query: 12 KVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEE--DFIH 69
+ D+R LV++A+ R + L QGA+ K T +AL E+ + +E + I
Sbjct: 15 EFDSRHRLVIVAAQRAKQLVQGARMASASKYTKETSIALDEVLRHKVKFLIGQEAREAIK 74
Query: 70 SLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMS 103
++ E + TE + ++S
Sbjct: 75 ESKRVKEGE-----TERLAMMTGEDAKEIKKELS 103
>gi|32474628|ref|NP_867622.1| hypothetical protein RB7088 [Rhodopirellula baltica SH 1]
gi|41688637|sp|Q7UP93|RPOZ_RHOBA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|32445167|emb|CAD75169.1| hypothetical protein RB7088 [Rhodopirellula baltica SH 1]
gi|327540689|gb|EGF27261.1| DNA-directed RNA polymerase, omega subunit [Rhodopirellula
baltica WH47]
Length = 90
Score = 37.1 bits (85), Expect = 0.76, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 7 EDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTL 58
E+ ++K+ RF L L R L+QG++ V V + L+EI +
Sbjct: 8 EEIVNKIGGRFKLSTLIQKRLVQLNQGSRALVSVDTHDKMSIVLQEIVQDKI 59
>gi|326382165|ref|ZP_08203857.1| DNA-directed RNA polymerase subunit omega [Gordonia neofelifaecis
NRRL B-59395]
gi|326198895|gb|EGD56077.1| DNA-directed RNA polymerase subunit omega [Gordonia neofelifaecis
NRRL B-59395]
Length = 99
Score = 37.1 bits (85), Expect = 0.78, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 12/65 (18%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVGKDKNTV-VALREI 53
+++ +++ +++ LV+ A+ R R ++ P V+ G + + +A+REI
Sbjct: 29 IDELLERTSSKYALVIYAAKRARQINDYYNQLAEGILEYVGPLVEPGVQEKPLSIAMREI 88
Query: 54 ASGTL 58
S L
Sbjct: 89 HSDLL 93
>gi|73662870|ref|YP_301651.1| DNA-directed RNA polymerase subunit omega [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
gi|82581609|sp|Q49WZ2|RPOZ_STAS1 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|72495385|dbj|BAE18706.1| putative DNA-directed RNA polymerase subunit K omega
[Staphylococcus saprophyticus subsp. saprophyticus ATCC
15305]
Length = 70
Score = 37.1 bits (85), Expect = 0.79, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 12 KVDNRFLLVLLASHRTRHLSQG--AKPTVDVGKDKNTVVALREIASGTLSPDDL 63
K+++++L+ A+ R R + + + +K AL EIA G + PD+L
Sbjct: 12 KINSKYLIATTAAKRAREIDEKPESALLTKYISEKPVGKALEEIADGVVFPDEL 65
>gi|153816139|ref|ZP_01968807.1| hypothetical protein RUMTOR_02387 [Ruminococcus torques ATCC
27756]
gi|145846474|gb|EDK23392.1| hypothetical protein RUMTOR_02387 [Ruminococcus torques ATCC
27756]
Length = 73
Score = 37.1 bits (85), Expect = 0.80, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSPD 61
V++R+ +V+ S R R L G P VD +K +A+ E+ G L
Sbjct: 14 KIVNSRYSIVMATSKRARQLIAGDLPLVDVKEGEKPLSIAIEELNKGELKIK 65
>gi|325969553|ref|YP_004245745.1| DNA-directed RNA polymerase subunit K [Vulcanisaeta moutnovskia
768-28]
gi|323708756|gb|ADY02243.1| DNA-directed RNA polymerase subunit K [Vulcanisaeta moutnovskia
768-28]
Length = 117
Score = 37.1 bits (85), Expect = 0.82, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 16 RFLLVLLASHRTRHLSQGAKPTV---DVGKDKNTVVALREIASGTL 58
++ L + + R + L+ GA+P + ++G +AL EI G +
Sbjct: 40 KYELARIVAARAKQLAMGAQPLINPQEIGTYDPVDIALEEIRRGLI 85
>gi|160933490|ref|ZP_02080878.1| hypothetical protein CLOLEP_02336 [Clostridium leptum DSM 753]
gi|156867367|gb|EDO60739.1| hypothetical protein CLOLEP_02336 [Clostridium leptum DSM 753]
Length = 67
Score = 37.1 bits (85), Expect = 0.82, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M+R +V+D + +R+ LV+ + R R ++Q A+ ++ +K +AL+E + +
Sbjct: 1 MSRPSVDDMLSGKQSRYSLVIAVAKRAREIAQTAEDNGEILTEKPVNMALKEFQAHKFNI 60
>gi|309389013|gb|ADO76893.1| DNA-directed RNA polymerase subunit omega [Halanaerobium
praevalens DSM 2228]
Length = 68
Score = 37.1 bits (85), Expect = 0.83, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 7 EDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVV-ALREIASGTLSPD 61
E I K D+ + +++L S R RHL+Q ++ + K V +L EI L+ +
Sbjct: 8 EQLIGKADSLYTVIILGSKRARHLNQNGPELLEKYRSKKLVSKSLEEIEKDKLTYE 63
>gi|224073742|ref|XP_002304151.1| predicted protein [Populus trichocarpa]
gi|222841583|gb|EEE79130.1| predicted protein [Populus trichocarpa]
Length = 352
Score = 37.1 bits (85), Expect = 0.85, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 27/71 (38%)
Query: 37 TVDVGKDKNTVVALREIASGTLSPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEA 96
V+ DK V+++R I + +++ LQ E + T S K A
Sbjct: 51 LVEELIDKKIVLSMRAIYQSKIGLGLMDKGAKEILQSISEKQGREMNTIESARDIPKFVA 110
Query: 97 LSFGQMSEGDL 107
Q++ ++
Sbjct: 111 FFKDQINLAEI 121
>gi|295397809|ref|ZP_06807874.1| DNA-directed RNA polymerase subunit omega [Aerococcus viridans
ATCC 11563]
gi|294973944|gb|EFG49706.1| DNA-directed RNA polymerase subunit omega [Aerococcus viridans
ATCC 11563]
Length = 70
Score = 37.1 bits (85), Expect = 0.87, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGT--LSPDD 62
++ +D++D+++ LV +A+ R L + + K AL EIAS + PD
Sbjct: 7 IDKLLDRIDSKYSLVSIAAKRATELQVEKNPMLTEYQSPKFVGQALEEIASNDLVIDPDS 66
Query: 63 LEED 66
L +
Sbjct: 67 LTQS 70
>gi|149178682|ref|ZP_01857266.1| hypothetical protein PM8797T_01634 [Planctomyces maris DSM 8797]
gi|148842457|gb|EDL56836.1| hypothetical protein PM8797T_01634 [Planctomyces maris DSM 8797]
Length = 92
Score = 36.8 bits (84), Expect = 0.91, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 7 EDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEED 66
E+ ++KV RF L L R L++GA+P V++ + + ++EI + D E
Sbjct: 8 EEIVNKVGGRFKLSSLIQKRIVALNRGARPLVEMQTKNHMEIVVQEIMEDKIYLDQSGEV 67
Query: 67 FI 68
I
Sbjct: 68 AI 69
>gi|226313320|ref|YP_002773214.1| DNA-directed RNA polymerase omega subunit [Brevibacillus brevis
NBRC 100599]
gi|254809278|sp|C0ZG01|RPOZ_BREBN RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226096268|dbj|BAH44710.1| DNA-directed RNA polymerase omega subunit [Brevibacillus brevis
NBRC 100599]
Length = 68
Score = 36.8 bits (84), Expect = 0.92, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALRE-IASGTL 58
+++ +K +++++LV +AS R R L + ++ V K K V +AL E I+ +
Sbjct: 6 IDELTEKAESKYILVTVASKRARQLRENSEVQVVRPKSKKFVGLALEEFISDELV 60
>gi|15615074|ref|NP_243377.1| DNA-directed RNA polymerase subunit omega [Bacillus halodurans
C-125]
gi|13959483|sp|Q9K9Y3|RPOZ_BACHD RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|10175131|dbj|BAB06230.1| DNA-directed RNA polymerase omega subunit [Bacillus halodurans
C-125]
Length = 68
Score = 36.8 bits (84), Expect = 0.93, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK--PTVDVGKDKNTV-VALREIASGTLSPD 61
++ +DK+D+++ LV +++ R R L + + P V K V VAL EI L +
Sbjct: 6 IDSLMDKLDSKYTLVTVSAKRARELKEDDQRGPLVGKPKSFKPVGVALEEIVEDHLQYE 64
>gi|56964086|ref|YP_175817.1| DNA-directed RNA polymerase subunit omega [Bacillus clausii
KSM-K16]
gi|81600843|sp|Q5WFK4|RPOZ_BACSK RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|56910329|dbj|BAD64856.1| DNA-directed RNA polymerase omega subunit [Bacillus clausii
KSM-K16]
Length = 70
Score = 36.8 bits (84), Expect = 0.94, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAK--PTVDVGKD-KNTVVALREIASGTLSPDD 62
+++ ++K+D+++ LV +++ R R + + + P V+ K K +AL EI + L+
Sbjct: 6 IDNLLEKLDSKYSLVTVSARRAREMKEDSARVPLVEKPKSYKFVGIALEEIVNDQLTKRV 65
Query: 63 LEED 66
+E+
Sbjct: 66 PKEE 69
>gi|226355081|ref|YP_002784821.1| DNA-directed RNA polymerase subunit omega [Deinococcus deserti
VCD115]
gi|259494385|sp|C1CZ29|RPOZ_DEIDV RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226317071|gb|ACO45067.1| DNA-directed RNA polymerase omega chain (RNAP omega subunit)
(Transcriptase omega chain) (RNA polymerase omega
subunit) [Deinococcus deserti VCD115]
Length = 99
Score = 36.8 bits (84), Expect = 0.96, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVG---KDKNTVV-ALREIASG 56
MA ++ + D+++ L ++ + R L GA + V + +N V A+RE+A+G
Sbjct: 1 MAEKDIDKLLSMTDSKYRLSVVTAKRALQLRSGAPSVLPVEQRVRTRNLVTQAMRELATG 60
Query: 57 TLSP 60
L+
Sbjct: 61 KLTV 64
>gi|317473632|ref|ZP_07932921.1| RNA polymerase Rpb6 [Anaerostipes sp. 3_2_56FAA]
gi|316898922|gb|EFV20947.1| RNA polymerase Rpb6 [Anaerostipes sp. 3_2_56FAA]
Length = 79
Score = 36.8 bits (84), Expect = 1.00, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTV-DVGKDKNTVVALREIASGTLSP 60
+ +R+ LV+ ++ R R L G P D + K A+ EI S +
Sbjct: 23 ITSRYSLVIASAKRARQLIGGDMPLTEDADEQKPLSTAVEEIRSNKVKI 71
>gi|302670643|ref|YP_003830603.1| DNA-directed RNA polymerase omega subunit RpoZ [Butyrivibrio
proteoclasticus B316]
gi|302395116|gb|ADL34021.1| DNA-directed RNA polymerase omega subunit RpoZ [Butyrivibrio
proteoclasticus B316]
Length = 90
Score = 36.8 bits (84), Expect = 1.00, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSPDDLEEDFIHSL 71
+ +R+ +V+ + R R + G +P V K K +A+ E+ TL L ++ +
Sbjct: 25 ISSRYSVVMATAKRARQIIAGDEPMVKVKDKQKPLSIAVDEMNQDTLRI--LTDEEKEEI 82
Query: 72 QKHVEIDE 79
Q +E
Sbjct: 83 QTEATENE 90
>gi|293366824|ref|ZP_06613500.1| DNA-directed RNA polymerase subunit omega [Staphylococcus
epidermidis M23864:W2(grey)]
gi|291319125|gb|EFE59495.1| DNA-directed RNA polymerase subunit omega [Staphylococcus
epidermidis M23864:W2(grey)]
gi|329736613|gb|EGG72879.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus
epidermidis VCU045]
Length = 70
Score = 36.8 bits (84), Expect = 1.00, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 12 KVDNRFLLVLLASHRTRHLSQGAK-PTVDVGKDKNTV-VALREIASGTLSP 60
KV++++L+ A+ R R L + + +D V AL EIA G + P
Sbjct: 12 KVNSKYLIATTAAKRARELDEKRETALLDQYHSAKPVGKALEEIADGKIEP 62
>gi|196233599|ref|ZP_03132440.1| hypothetical protein CfE428DRAFT_5607 [Chthoniobacter flavus
Ellin428]
gi|196222269|gb|EDY16798.1| hypothetical protein CfE428DRAFT_5607 [Chthoniobacter flavus
Ellin428]
Length = 101
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 19 LVLLASHRTRHLSQGAKPTVDVG-KDKNTVVALREIASGTLSPD 61
LV + S R R LS G +P V V +AL E+ +G LS +
Sbjct: 19 LVNVISRRVRQLSNGHRPMVLVDFGMGLADIALTELIAGKLSYE 62
>gi|224372559|ref|YP_002606931.1| RNA polymerases K / 14 to 18 kDa subunit [Nautilia profundicola
AmH]
gi|254809253|sp|B9L8H3|RPOZ_NAUPA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|223589317|gb|ACM93053.1| RNA polymerases K / 14 to 18 kDa subunit [Nautilia profundicola
AmH]
Length = 67
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 10 IDKVD-NRFLLVLLASHRTRHLSQGAKPTVD--VGKDKNTVVALREIASGTLSPDDL 63
++KV+ +R+LL + R L GAKP ++ + T +A EIA G + ++
Sbjct: 11 LEKVNYDRYLLSQAIAKRVNELINGAKPLIELPKPNMQLTEIATLEIAEGLVKVKEV 67
>gi|319760726|ref|YP_004124664.1| hypothetical protein BVAF_619 [Candidatus Blochmannia vafer str.
BVAF]
gi|313906883|gb|ADR83540.1| DNA-directed RNA polymerase subunit omega [Candidatus Blochmannia
vafer]
gi|313906885|gb|ADR83541.1| DNA-directed RNA polymerase subunit omega [Candidatus Blochmannia
vafer]
gi|313906887|gb|ADR83542.1| DNA-directed RNA polymerase subunit omega [Candidatus Blochmannia
vafer]
gi|313906889|gb|ADR83543.1| DNA-directed RNA polymerase subunit omega [Candidatus Blochmannia
vafer]
gi|313906891|gb|ADR83544.1| DNA-directed RNA polymerase subunit omega [Candidatus Blochmannia
vafer]
gi|313906893|gb|ADR83545.1| DNA-directed RNA polymerase subunit omega [Candidatus Blochmannia
vafer]
gi|313906895|gb|ADR83546.1| DNA-directed RNA polymerase subunit omega [Candidatus Blochmannia
vafer]
gi|313906897|gb|ADR83547.1| DNA-directed RNA polymerase subunit omega [Candidatus Blochmannia
vafer]
gi|318039440|gb|ADV33990.1| hypothetical protein BVAF_619 [Candidatus Blochmannia vafer str.
BVAF]
Length = 58
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 1 MARTTVEDCID-KVDNRFLLVLLASHRTRHLSQGAKP--TVDVGKDKNTVVALREI 53
M TT++ + ++ NRF L+L+AS R R + + V K TV A +E+
Sbjct: 1 MNETTIKQSLKTEIKNRFNLILVASRRARQIQNEERENCFVKQNTSKCTVRAFKEM 56
>gi|224476316|ref|YP_002633922.1| DNA-directed RNA polymerase subunit omega [Staphylococcus
carnosus subsp. carnosus TM300]
gi|254809259|sp|B9DPL6|RPOZ_STACT RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|222420923|emb|CAL27737.1| putative DNA-directed RNA polymerase subunit omega
[Staphylococcus carnosus subsp. carnosus TM300]
Length = 76
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 12 KVDNRFLLVLLASHRTRHLSQG-AKPTVDVGKDKNTV-VALREIASGTLSP--DDLEED 66
KV +++L+ +A+ R R L ++ TV AL EIA+G ++P +L E
Sbjct: 12 KVSSKYLIATVAAKRARELYDKPETALLEHYHSVKTVGKALEEIAAGKITPIEPELNES 70
>gi|154250343|ref|YP_001411168.1| DNA-directed RNA polymerase, omega subunit [Fervidobacterium
nodosum Rt17-B1]
gi|154154279|gb|ABS61511.1| DNA-directed RNA polymerase, omega subunit [Fervidobacterium
nodosum Rt17-B1]
Length = 76
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASG--TLSPDDLEEDF 67
++K+ ++ + ++ + R ++ AKP V+ + +A +E+ G + +D+ +
Sbjct: 12 LEKIPYKYAIPIVVAKRAEAINDFAKPFVETPDGYSVSIAFKELQEGYLRIKNEDILKIL 71
Query: 68 I 68
I
Sbjct: 72 I 72
>gi|311029968|ref|ZP_07708058.1| DNA-directed RNA polymerase subunit omega [Bacillus sp. m3-13]
Length = 77
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKD-KNTVVALREIASGTLSPDDLE 64
++ + K+D+++ LV +++ R R L Q ++ K AL EI +G LS ++
Sbjct: 6 IDSLMQKLDSKYTLVTVSARRARELQQVNDQMIEKTVSYKFVGKALEEIDAGLLSAKTIK 65
>gi|302392205|ref|YP_003828025.1| DNA-directed RNA polymerase, omega subunit [Acetohalobium
arabaticum DSM 5501]
gi|302204282|gb|ADL12960.1| DNA-directed RNA polymerase, omega subunit [Acetohalobium
arabaticum DSM 5501]
Length = 67
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 17 FLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEED 66
+ LV+ A+ R R L+ P VD K AL E+ +G L ++E+
Sbjct: 19 YTLVIEAAKRARELND-EDPVVDCKTKKPVSNALEEVLAGRLKHKSVDEE 67
>gi|15807479|ref|NP_296214.1| DNA-directed RNA polymerase subunit omega [Deinococcus
radiodurans R1]
gi|6460316|gb|AAF12036.1|AE002079_1 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 101
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVG----KDKNTVVALREIASG 56
MA ++ + D+++ L ++ + R L GA + V A+RE+A+G
Sbjct: 3 MAEKDIDKLLSLTDSKYRLSVVTAKRALQLRSGAPSVLPVEQRVRTHNLVTQAMRELATG 62
Query: 57 TLSPDDLEEDFIHSLQKHVE 76
L+ + I + H +
Sbjct: 63 QLTVGT---NLIDEQRFHQD 79
>gi|13959501|sp|Q9RRJ6|RPOZ_DEIRA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
Length = 99
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVG----KDKNTVVALREIASG 56
MA ++ + D+++ L ++ + R L GA + V A+RE+A+G
Sbjct: 1 MAEKDIDKLLSLTDSKYRLSVVTAKRALQLRSGAPSVLPVEQRVRTHNLVTQAMRELATG 60
Query: 57 TLSPDDLEEDFIHSLQKHVE 76
L+ + I + H +
Sbjct: 61 QLTVGT---NLIDEQRFHQD 77
>gi|313885115|ref|ZP_07818867.1| DNA-directed RNA polymerase, omega subunit [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619806|gb|EFR31243.1| DNA-directed RNA polymerase, omega subunit [Eremococcus coleocola
ACS-139-V-Col8]
Length = 65
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV-DVGKDKNTVVALREIASGTLSP 60
++ +++V + + L++LAS R + K + D K AL E+ + L
Sbjct: 7 IDKLVERVPSTYSLIILASKRAHEMQAHKKYQLDDYQSVKPVGQALEEVVADKLEI 62
>gi|217967824|ref|YP_002353330.1| DNA-directed RNA polymerase, omega subunit [Dictyoglomus turgidum
DSM 6724]
gi|226703123|sp|B8E0X9|RPOZ_DICTD RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|217336923|gb|ACK42716.1| DNA-directed RNA polymerase, omega subunit [Dictyoglomus turgidum
DSM 6724]
Length = 67
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M ++ I K+ N+++L ++ S R R L + K + +D ++A+ EIA ++
Sbjct: 1 MKEVNIDTLISKIPNKYVLTVVISKRARQLFEELKFLKTIARD-PLILAMEEIAQEKIAY 59
Query: 61 ---DDLEE 65
DDLE+
Sbjct: 60 GEGDDLED 67
>gi|325283785|ref|YP_004256326.1| DNA-directed RNA polymerase subunit omega [Deinococcus
proteolyticus MRP]
gi|324315594|gb|ADY26709.1| DNA-directed RNA polymerase subunit omega [Deinococcus
proteolyticus MRP]
Length = 99
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 7/99 (7%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNT----VVALREIASG 56
MA ++ ++ D+++ L ++ + R LS GA + + +A+RE+A+G
Sbjct: 1 MAEKNIDRMLEMTDSKYRLSVITAKRALQLSAGAPSVLPAEQKAKIHNVVTLAMRELATG 60
Query: 57 TLSPDDL---EEDFIHSLQKHVEIDEPDSPTENSDFSWH 92
L+ E+ F Q+ +I+ T +
Sbjct: 61 QLTTGQELIDEQRFFQDYQRQRQIELQKQLTAERERERD 99
>gi|119490023|ref|ZP_01622647.1| serine/threonine kinase with WD-40 repeat [Lyngbya sp. PCC 8106]
gi|119454175|gb|EAW35327.1| serine/threonine kinase with WD-40 repeat [Lyngbya sp. PCC 8106]
Length = 1908
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 3 RTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASG 56
R T E C NR+ LV + S + + + G+ + V + TV+A+ EI
Sbjct: 1850 RLTTE-CKPHKINRYELVRVVSRKVKRIMYGSDHKITVK--QATVLAIEEILEE 1900
>gi|262091718|gb|ACY25308.1| DNA-directed RNA polymerase omega subunit [uncultured
actinobacterium]
Length = 115
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 38/117 (32%), Gaps = 19/117 (16%)
Query: 7 EDCIDKVDNRFLLVLLASHRTRHLSQG-----------AKPTVDVGKDKNTVVALREIAS 55
E + + ++F LV L++ R R ++ P V K ++ EIA+
Sbjct: 7 ESLMKRTLSKFSLVTLSARRAREINSYFNQLGEGLGTMVPPQVSSTSRKPLSISFEEIAA 66
Query: 56 GTLSPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGIN 112
+ ++ + E + + E+ + G+++
Sbjct: 67 DKI--------LSVPMRAYEEPEADADAALLEVAADAVVESFEAADLPTGEVVADAE 115
>gi|225848108|ref|YP_002728271.1| DNA-directed RNA polymerase subunit omega [Sulfurihydrogenibium
azorense Az-Fu1]
gi|225644041|gb|ACN99091.1| DNA-directed RNA polymerase, omega subunit [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 71
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 3 RTTVEDCIDKVDNRFLLVLLASHRTRHLSQ-GAKPTVDVGKD--KNTVVALREIASG 56
R +E + KV +R+ LV AS L + GA+ V K TV+A+ +IASG
Sbjct: 4 RPLIEQALKKVKSRYELVHAASKLAIELYETGAETYVTEEGIPLKKTVIAIDKIASG 60
>gi|153853287|ref|ZP_01994696.1| hypothetical protein DORLON_00682 [Dorea longicatena DSM 13814]
gi|149754073|gb|EDM64004.1| hypothetical protein DORLON_00682 [Dorea longicatena DSM 13814]
Length = 73
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDVG-KDKNTVVALREIASGTLSP 60
V++R+ +V+ + R R + G+ P VD +K +A+ E+ G ++
Sbjct: 14 KVVNSRYSIVMATAKRAREIIDGSMPLVDAKVGEKPLSIAIDEMNQGKMTI 64
>gi|52080172|ref|YP_078963.1| DNA-directed RNA polymerase subunit omega [Bacillus licheniformis
ATCC 14580]
gi|52785549|ref|YP_091378.1| DNA-directed RNA polymerase subunit omega [Bacillus licheniformis
ATCC 14580]
gi|319646048|ref|ZP_08000278.1| DNA-directed RNA polymerase subunit omega [Bacillus sp. BT1B_CT2]
gi|81609176|sp|Q65JS9|RPOZ_BACLD RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|52003383|gb|AAU23325.1| RNA polymerase, omega subunit [Bacillus licheniformis ATCC 14580]
gi|52348051|gb|AAU40685.1| YloH [Bacillus licheniformis ATCC 14580]
gi|317391798|gb|EFV72595.1| DNA-directed RNA polymerase subunit omega [Bacillus sp. BT1B_CT2]
Length = 66
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSPD 61
++ ++K+D+++ LV +++ R R + ++ K AL EI +G L+ +
Sbjct: 6 IDSLMNKLDSKYTLVTVSARRAREMQMNKDAQIENPKSHKFVGKALEEIDAGLLTFE 62
>gi|169606342|ref|XP_001796591.1| hypothetical protein SNOG_06208 [Phaeosphaeria nodorum SN15]
gi|160706970|gb|EAT86039.2| hypothetical protein SNOG_06208 [Phaeosphaeria nodorum SN15]
Length = 377
Score = 36.0 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 9/54 (16%), Positives = 23/54 (42%)
Query: 69 HSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNIVTPDKRDD 122
++K + D+ ++ E P + ++E +L + + P ++DD
Sbjct: 225 QHIRKQMLGDDVEAGAEQPGSRSMSPSSKDASNLTEDELSSSTSTAINPSEKDD 278
>gi|225028089|ref|ZP_03717281.1| hypothetical protein EUBHAL_02359 [Eubacterium hallii DSM 3353]
gi|224954559|gb|EEG35768.1| hypothetical protein EUBHAL_02359 [Eubacterium hallii DSM 3353]
Length = 97
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSPDDLEEDFIHSL 71
+++R+ +V+ S R R + G +P V+ + +K +A++E+ + +E+ +
Sbjct: 16 INSRYSIVIATSKRAREIIGGDEPLVNGMEGEKPLSIAVKELYDSKIKILPGDEENMED- 74
Query: 72 QKHVEIDEPDSPTENS 87
++H+ +E + E
Sbjct: 75 EEHLSSEEFEELGEVD 90
>gi|255326210|ref|ZP_05367296.1| AMP-dependent synthetase and ligase [Rothia mucilaginosa ATCC
25296]
gi|255296664|gb|EET75995.1| AMP-dependent synthetase and ligase [Rothia mucilaginosa ATCC
25296]
Length = 723
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 12/77 (15%)
Query: 23 ASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEEDFIHSLQKHVEI-DEPD 81
A+ R + + + LRE A+ ++L E + +QK E E
Sbjct: 636 AAERLHEYA---------DQQTERLAELREQAAEK--FEELREQAVERMQKPQEDKTETK 684
Query: 82 SPTENSDFSWHKPEALS 98
E S+ + E +
Sbjct: 685 EDAERSEKTNDDSEHET 701
>gi|255327145|ref|ZP_05368220.1| DNA-directed RNA polymerase omega subunit [Rothia mucilaginosa ATCC
25296]
gi|255295763|gb|EET75105.1| DNA-directed RNA polymerase omega subunit [Rothia mucilaginosa ATCC
25296]
Length = 152
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 22/123 (17%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAK-----------PTVDVG-KDKNTVVALREIASGT 57
I+K ++++ LV+ + R R ++ P VD +K+ VA+REI +
Sbjct: 31 IEKAESKYGLVIFGARRARQINAYYANLQDNTAAHVGPLVDAESNEKSLSVAMREIIADR 90
Query: 58 LSPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSF-GQMSEGDLLEGINNIVT 116
+ + + + DE P + A F G + E + G ++
Sbjct: 91 V---------VAEHRPDAKFDEDGYPVPEDLSAVIDFSAAEFSGAIEEEYIPAGSEEVIA 141
Query: 117 PDK 119
++
Sbjct: 142 IEE 144
>gi|196232199|ref|ZP_03131054.1| DNA-directed RNA polymerase, omega subunit [Chthoniobacter flavus
Ellin428]
gi|196223921|gb|EDY18436.1| DNA-directed RNA polymerase, omega subunit [Chthoniobacter flavus
Ellin428]
Length = 88
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 7 EDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKD-KNTVVALREIASGTLSPDDLEE 65
E + + N LV + S R R LS G +P V++ +AL E+ G L+ + E
Sbjct: 7 EKALAVIKNEQYLVNVISRRVRQLSNGHRPMVEIESRMGLADIALMEVIKGKLTYEQTSE 66
>gi|228992598|ref|ZP_04152525.1| DNA-directed RNA polymerase subunit omega [Bacillus
pseudomycoides DSM 12442]
gi|228998646|ref|ZP_04158233.1| DNA-directed RNA polymerase subunit omega [Bacillus mycoides
Rock3-17]
gi|229006147|ref|ZP_04163834.1| DNA-directed RNA polymerase subunit omega [Bacillus mycoides
Rock1-4]
gi|228755100|gb|EEM04458.1| DNA-directed RNA polymerase subunit omega [Bacillus mycoides
Rock1-4]
gi|228761114|gb|EEM10073.1| DNA-directed RNA polymerase subunit omega [Bacillus mycoides
Rock3-17]
gi|228767232|gb|EEM15868.1| DNA-directed RNA polymerase subunit omega [Bacillus
pseudomycoides DSM 12442]
Length = 70
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVG-KDKNTVVALREIASGTLSPDDLE 64
++ + K+D+++ LV +A+ R R + V+ K AL EI + L+ E
Sbjct: 6 IDSLLKKIDSKYTLVTVAAKRAREMQMANNCVVENPVSHKCVGKALEEIDAEALNYVPSE 65
Query: 65 E 65
E
Sbjct: 66 E 66
>gi|154505307|ref|ZP_02042045.1| hypothetical protein RUMGNA_02821 [Ruminococcus gnavus ATCC
29149]
gi|153794350|gb|EDN76770.1| hypothetical protein RUMGNA_02821 [Ruminococcus gnavus ATCC
29149]
Length = 72
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTV-DVGKDKNTVVALREIASGTLSP 60
V++R+ +V+ S R R L G P V +K +A+ E+ +G L
Sbjct: 14 KVVNSRYSIVMATSKRARQLIDGDLPMVHAKAGEKPLSIAIEEMNAGELKI 64
>gi|254302285|ref|ZP_04969643.1| hypothetical protein FNP_2338 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148322477|gb|EDK87727.1| hypothetical protein FNP_2338 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 73
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 4 TTVEDCIDKVDNRFLLVLLASHRTRH-----LSQGAKPTVDVGKDKNTV---VALREIAS 55
T ++ + K+ N+++L ++ R R + +G +P DK +EI +
Sbjct: 5 ITYDELLAKIPNKYILTIVGGERARERAKERMERGGEPLPLTKYDKKDTEMKKVFKEILA 64
Query: 56 GTLSPDD 62
G + +D
Sbjct: 65 GKVGYED 71
>gi|296329149|ref|ZP_06871651.1| DNA-directed RNA polymerase subunit omega [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
gi|296153723|gb|EFG94539.1| DNA-directed RNA polymerase subunit omega [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
Length = 74
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 4 TTVEDCIDKVDNRFLLVLLASHRTRH-----LSQGAKPTVDVGKDKNTV---VALREIAS 55
T ++ + K+ N+++L ++ R R + +G +P DK +EI +
Sbjct: 5 ITYDELLTKIPNKYILTIVGGERARERAKERMERGGEPLPLTKYDKKDTEMKKVFKEILA 64
Query: 56 GTLSPDDLEE 65
G + + EE
Sbjct: 65 GKVGYEKEEE 74
>gi|237740919|ref|ZP_04571400.1| predicted protein [Fusobacterium sp. 4_1_13]
gi|256846766|ref|ZP_05552222.1| DNA-directed RNA polymerase, omega subunit [Fusobacterium sp.
3_1_36A2]
gi|294784283|ref|ZP_06749577.1| DNA-directed RNA polymerase, omega subunit [Fusobacterium sp.
3_1_27]
gi|229430963|gb|EEO41175.1| predicted protein [Fusobacterium sp. 4_1_13]
gi|256717986|gb|EEU31543.1| DNA-directed RNA polymerase, omega subunit [Fusobacterium sp.
3_1_36A2]
gi|294488039|gb|EFG35391.1| DNA-directed RNA polymerase, omega subunit [Fusobacterium sp.
3_1_27]
Length = 73
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 4 TTVEDCIDKVDNRFLLVLLASHRTRH-----LSQGAKPTVDVGKDKNTV---VALREIAS 55
T ++ +DK+ N+++L ++A R R + +G +P DK +EI +
Sbjct: 5 ITYDELLDKISNKYILTIVAGERARERAKERVERGGEPLPLTKYDKKDTEMKKVFKEILA 64
Query: 56 GTLSPDD 62
G +S ++
Sbjct: 65 GKVSYEE 71
>gi|187736066|ref|YP_001878178.1| DNA-directed RNA polymerase, omega subunit [Akkermansia
muciniphila ATCC BAA-835]
gi|187426118|gb|ACD05397.1| DNA-directed RNA polymerase, omega subunit [Akkermansia
muciniphila ATCC BAA-835]
Length = 73
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSPDD 62
VE + +L+ + S R L+ G P V N +AL EI G L
Sbjct: 6 VEQASKIIPEPQMLINVVSRRVAQLNNGRAPLVPTTPHMGNANIALTEIIEGKLVYHT 63
>gi|313904017|ref|ZP_07837397.1| DNA-directed RNA polymerase, omega subunit [Eubacterium
cellulosolvens 6]
gi|313471166|gb|EFR66488.1| DNA-directed RNA polymerase, omega subunit [Eubacterium
cellulosolvens 6]
Length = 86
Score = 35.6 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVGKD-----KNTVVALREIASGTLSP 60
V +R+ +VL ++ R R + G KP V+ K +A+ E+ G ++
Sbjct: 25 VTSRYSIVLASAKRARQIIDGDKPRVNSKDKNGTERKPLSIAVDELYDGEVNI 77
>gi|85057934|ref|YP_456850.1| DNA-directed RNA polymerase omega chain [Aster yellows
witches'-broom phytoplasma AYWB]
gi|84790039|gb|ABC65771.1| DNA-directed RNA polymerase omega chain [Aster yellows
witches'-broom phytoplasma AYWB]
Length = 81
Score = 35.6 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 27/56 (48%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPD 61
++ +DK+++++ LV +AS + K ++ +K AL EI + +
Sbjct: 24 IDKLLDKINSKYKLVHIASKTAHVIEAQKKELPELLCNKVVGKALEEIINDKVKFA 79
>gi|297583983|ref|YP_003699763.1| DNA-directed RNA polymerase subunit omega [Bacillus
selenitireducens MLS10]
gi|297142440|gb|ADH99197.1| DNA-directed RNA polymerase, omega subunit [Bacillus
selenitireducens MLS10]
Length = 135
Score = 35.6 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQG---AKPTVDVGKDKNTVVALREIASGT 57
M + +++ + K+++++ LV ++S R R L A TV AL EI
Sbjct: 1 MLKPSIDSLMTKINSKYTLVTISSQRARELRDYPETASMTVRSTSPNFVGRALEEIDQEI 60
Query: 58 LSPDDLE 64
L L
Sbjct: 61 LGYKKLT 67
>gi|260459270|ref|ZP_05807525.1| DNA-directed RNA polymerase, omega subunit [Mesorhizobium
opportunistum WSM2075]
gi|259034824|gb|EEW36080.1| DNA-directed RNA polymerase, omega subunit [Mesorhizobium
opportunistum WSM2075]
Length = 106
Score = 35.6 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLE 64
V DC + V NRF L + A+ R R LS+GA+P + +ALREIA PD+++
Sbjct: 6 VLDCENTVPNRFALAVAAAGRARALSRGAEPRLTGSVTVPVELALREIAGNRFQPDEVK 64
>gi|94984360|ref|YP_603724.1| DNA-directed RNA polymerase, omega subunit [Deinococcus
geothermalis DSM 11300]
gi|122986725|sp|Q1J1S9|RPOZ_DEIGD RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|94554641|gb|ABF44555.1| DNA-directed RNA polymerase subunit omega [Deinococcus
geothermalis DSM 11300]
Length = 99
Score = 35.6 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVG---KDKNTVV-ALREIASG 56
MA ++ + D+++ L ++ + R L GA + V + +N V A+RE+A+G
Sbjct: 1 MAEKDIDKLLSLTDSKYRLSVVIAKRALQLRSGAPSVLPVEQRVRTRNLVTQAMRELATG 60
Query: 57 TLSP 60
L+
Sbjct: 61 KLTV 64
>gi|330685503|gb|EGG97156.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus
epidermidis VCU121]
Length = 70
Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 12 KVDNRFLLVLLASHRTRHLSQGAKPTVDVG--KDKNTVVALREIASGTLSP 60
K+ +++L+ A+ R R L + + ++ K AL EIA G +SP
Sbjct: 12 KITSKYLIATTAAKRARELDERPETALESEYHSAKPVGKALEEIADGKVSP 62
>gi|239636310|ref|ZP_04677312.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus
warneri L37603]
gi|239597665|gb|EEQ80160.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus
warneri L37603]
Length = 70
Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 12 KVDNRFLLVLLASHRTRHLSQGAKPTVDVG--KDKNTVVALREIASGTLSP 60
K+ +++L+ A+ R R L + + ++ K AL EIA G +SP
Sbjct: 12 KITSKYLIATTAAKRARELDERPETALETEYHSAKPVGKALEEIADGKVSP 62
>gi|162447171|ref|YP_001620303.1| DNA-directed RNA polymerase subunit omega [Acholeplasma laidlawii
PG-8A]
gi|161985278|gb|ABX80927.1| DNA-directed RNA polymerase subunit omega [Acholeplasma laidlawii
PG-8A]
Length = 71
Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 5 TVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVV---ALREIASGTLSP 60
T++ ++K+D+++ LV AS + + +DV K+ AL EIA+G ++
Sbjct: 12 TIDVLLEKIDSKYKLVYAASKVAHII---ERENLDVKDSKSVTSVGKALEEIANGKVTV 67
>gi|291087643|ref|ZP_06347008.2| DNA-directed RNA polymerase, omega subunit [Clostridium sp.
M62/1]
gi|291074546|gb|EFE11910.1| DNA-directed RNA polymerase, omega subunit [Clostridium sp.
M62/1]
Length = 89
Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 22/48 (45%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
+ +R+ +V+ + R R L P++ K VA+ E+ + +
Sbjct: 29 IQSRYSIVIATAKRARQLIAKEDPSIASASRKPLSVAIDELYNSKVKI 76
>gi|167768026|ref|ZP_02440079.1| hypothetical protein CLOSS21_02569 [Clostridium sp. SS2/1]
gi|167710355|gb|EDS20934.1| hypothetical protein CLOSS21_02569 [Clostridium sp. SS2/1]
Length = 71
Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 11 DKVDNRFLLVLLASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLSP 60
+ +R+ +VL ++ R R + G P V+ K A+ E+ +
Sbjct: 12 KVISSRYSIVLASAKRARQIIAGDMPLVEEKDGAKPLSTAVEELWEEKVKI 62
>gi|312879953|ref|ZP_07739753.1| DNA-directed RNA polymerase, omega subunit [Aminomonas
paucivorans DSM 12260]
gi|310783244|gb|EFQ23642.1| DNA-directed RNA polymerase, omega subunit [Aminomonas
paucivorans DSM 12260]
Length = 82
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 12 KVDNRFLLVLLASHRTRHLSQGAKPTVDVG-KDKNTVVALREIASGTLSPDDLE 64
+ N+++L L+ S R R LS+ V +K ALR++ G + LE
Sbjct: 14 NISNKYILTLMVSARARQLSEQKGRLVAEDTGEKFITRALRDVQEGRVEFRFLE 67
>gi|254446339|ref|ZP_05059815.1| hypothetical protein VDG1235_4589 [Verrucomicrobiae bacterium
DG1235]
gi|198260647|gb|EDY84955.1| hypothetical protein VDG1235_4589 [Verrucomicrobiae bacterium
DG1235]
Length = 44
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 22 LASHRTRHLSQGAKPTVDV-GKDKNTVVALREIASGTLSPD 61
+ S R + L G +P V+ K +ALREI G +S +
Sbjct: 1 MVSRRVKQLRHGNRPLVESLEKLNPEDIALREIIEGKISYE 41
>gi|152976236|ref|YP_001375753.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|189043968|sp|A7GRK0|RPOZ_BACCN RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|152024988|gb|ABS22758.1| DNA-directed RNA polymerase, omega subunit [Bacillus cytotoxicus
NVH 391-98]
Length = 70
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVG-KDKNTVVALREIASGTLSPDDLE 64
++ + K+D+++ LV +A+ R R + V+ K AL EI + L+ E
Sbjct: 6 IDSLLKKIDSKYTLVTVAAKRAREMQLADDCAVEKPVSHKFVGKALEEIDAELLNYVPSE 65
Query: 65 E 65
E
Sbjct: 66 E 66
>gi|30021958|ref|NP_833589.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus ATCC
14579]
gi|206971321|ref|ZP_03232272.1| DNA-directed RNA polymerase, omega subunit [Bacillus cereus
AH1134]
gi|218236091|ref|YP_002368671.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus B4264]
gi|228922624|ref|ZP_04085924.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228954147|ref|ZP_04116175.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228960086|ref|ZP_04121750.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|229047557|ref|ZP_04193147.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus AH676]
gi|229071368|ref|ZP_04204591.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus
F65185]
gi|229081125|ref|ZP_04213635.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus
Rock4-2]
gi|229111341|ref|ZP_04240894.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus
Rock1-15]
gi|229129146|ref|ZP_04258119.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus
BDRD-Cer4]
gi|229146441|ref|ZP_04274812.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus
BDRD-ST24]
gi|229152069|ref|ZP_04280264.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus m1550]
gi|229180146|ref|ZP_04307490.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus
172560W]
gi|229192039|ref|ZP_04319009.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus ATCC
10876]
gi|296504365|ref|YP_003666065.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
BMB171]
gi|41688657|sp|Q819T7|RPOZ_BACCR RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226699543|sp|B7H6K7|RPOZ_BACC4 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|29897514|gb|AAP10790.1| DNA-directed RNA polymerase omega chain [Bacillus cereus ATCC
14579]
gi|206734093|gb|EDZ51264.1| DNA-directed RNA polymerase, omega subunit [Bacillus cereus
AH1134]
gi|218164048|gb|ACK64040.1| DNA-directed RNA polymerase, omega subunit [Bacillus cereus
B4264]
gi|228591590|gb|EEK49439.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus ATCC
10876]
gi|228603355|gb|EEK60832.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus
172560W]
gi|228631418|gb|EEK88052.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus m1550]
gi|228637074|gb|EEK93533.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus
BDRD-ST24]
gi|228654383|gb|EEL10248.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus
BDRD-Cer4]
gi|228672117|gb|EEL27408.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus
Rock1-15]
gi|228702169|gb|EEL54645.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus
Rock4-2]
gi|228711822|gb|EEL63774.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus
F65185]
gi|228723804|gb|EEL75159.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus AH676]
gi|228799602|gb|EEM46555.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228805467|gb|EEM52058.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228837053|gb|EEM82394.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|296325417|gb|ADH08345.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
BMB171]
Length = 70
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVG-KDKNTVVALREIASGTLSP 60
++ + K+D+++ LV +A+ R R + V+ K AL EI + LS
Sbjct: 6 IDSLLQKIDSKYTLVTVAAKRAREMQLANNCVVEKPVSHKCVGKALEEIDAEALSY 61
>gi|284165817|ref|YP_003404096.1| RNA polymerase Rpb6 [Haloterrigena turkmenica DSM 5511]
gi|284015472|gb|ADB61423.1| RNA polymerase Rpb6 [Haloterrigena turkmenica DSM 5511]
Length = 61
Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 15 NRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTL 58
NR+ + R +S GA VD + + ++A E +G L
Sbjct: 7 NRYEKARILGARALQISYGAPVLVDTDQSEPILIAAEEYDAGAL 50
>gi|295091932|emb|CBK78039.1| DNA-directed RNA polymerase, omega subunit [Clostridium cf.
saccharolyticum K10]
Length = 86
Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 22/48 (45%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
+ +R+ +V+ + R R L P++ K VA+ E+ + +
Sbjct: 26 IQSRYSIVIATAKRARQLIAKEDPSIASASRKPLSVAIDELYNSKVKI 73
>gi|317129262|ref|YP_004095544.1| DNA-directed RNA polymerase subunit omega [Bacillus
cellulosilyticus DSM 2522]
gi|315474210|gb|ADU30813.1| DNA-directed RNA polymerase, omega subunit [Bacillus
cellulosilyticus DSM 2522]
Length = 68
Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV---VALREIASGT 57
M + +++ + K+++++ LV ++S R R L + + K K+ +AL EI +
Sbjct: 1 MLQPSIDSLMTKINSKYTLVTVSSKRARELREKPESYQKTSKSKSVNYVGMALEEIDAEK 60
Query: 58 LSP 60
L+
Sbjct: 61 LTL 63
>gi|228940958|ref|ZP_04103517.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228973887|ref|ZP_04134463.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228980477|ref|ZP_04140787.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
Bt407]
gi|228779297|gb|EEM27554.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
Bt407]
gi|228785912|gb|EEM33915.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228818794|gb|EEM64860.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|326941639|gb|AEA17535.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 70
Score = 35.2 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSP 60
++ + K+D+++ LV +A+ R R + V+ K AL EI + LS
Sbjct: 6 IDSLLQKIDSKYTLVTVAAKRAREMQLANNCVVEQPVSHKCVGKALEEIDAEALSY 61
>gi|50979218|ref|NP_001003362.1| protein 4.1 [Canis lupus familiaris]
gi|59797482|sp|Q6Q7P4|41_CANFA RecName: Full=Protein 4.1; Short=P4.1; AltName: Full=4.1R; AltName:
Full=Band 4.1
gi|45359814|gb|AAS59144.1| protein 4.1R [Canis lupus familiaris]
Length = 810
Score = 35.2 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 6/103 (5%)
Query: 23 ASHRTRHLSQGAKPTVDVGKDKNTV----VALREIASGTLSPDDLEEDFIHSLQKHVEID 78
AS R GA VD + +A + A GT+ +++ + QK D
Sbjct: 536 ASKRASRSLDGAAA-VDSDRSPRPTSAPAIAQSQDAEGTVPGAPVKKTVVSKAQKETVKD 594
Query: 79 EPDSPTENSDFSWHKPEALSFG-QMSEGDLLEGINNIVTPDKR 120
E D + +P + S+ ++ + +I K
Sbjct: 595 EEKKEEGPPDQAEPEPTEVWKDLDKSQEEIKKHHASISELKKN 637
>gi|251810641|ref|ZP_04825114.1| DNA-directed RNA polymerase subunit omega [Staphylococcus
epidermidis BCM-HMP0060]
gi|282876357|ref|ZP_06285224.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus
epidermidis SK135]
gi|251805801|gb|EES58458.1| DNA-directed RNA polymerase subunit omega [Staphylococcus
epidermidis BCM-HMP0060]
gi|281295382|gb|EFA87909.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus
epidermidis SK135]
Length = 70
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 12 KVDNRFLLVLLASHRTRHLSQGAK-PTVDVGKDKNTV-VALREIASGTLSP 60
KV++++L+ A+ R R L + + +D V AL EIA G + P
Sbjct: 12 KVNSKYLIATTAAKRARELDERRETALLDQYHSAKPVGKALEEIADGKIEP 62
>gi|206900514|ref|YP_002251156.1| DNA-directed RNA polymerase, omega subunit [Dictyoglomus
thermophilum H-6-12]
gi|226703122|sp|B5YF48|RPOZ_DICT6 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|206739617|gb|ACI18675.1| DNA-directed RNA polymerase, omega subunit [Dictyoglomus
thermophilum H-6-12]
Length = 67
Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
M ++ I K+ N+++L ++ S R R L + K V +D ++A+ E+A ++
Sbjct: 1 MKEIDIDTLISKIPNKYILTVVISRRARQLFEELKILKTVARD-PLILAMEEVAQDKITY 59
Query: 61 DD 62
+
Sbjct: 60 GE 61
>gi|77460846|ref|YP_350353.1| histidine kinase [Pseudomonas fluorescens Pf0-1]
gi|77384849|gb|ABA76362.1| histidine kinase [Pseudomonas fluorescens Pf0-1]
Length = 756
Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 9/114 (7%)
Query: 9 CIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEEDFI 68
C+ +D RF L A R G+ ++ ++A + IA T + L+E
Sbjct: 401 CVKIID-RFEL--YAHQIAREEDDGS------DTEEKKLLAKKAIADTTKEVEKLKESIS 451
Query: 69 HSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNIVTPDKRDD 122
+LQ+ V+ E + N + A +++E I K ++
Sbjct: 452 KNLQETVDTGEQKDISANEPETLMVRIAEVESRLAEAAARSSELEIHLEKKAEE 505
>gi|91090218|ref|XP_968156.1| PREDICTED: similar to E1a binding protein P400 [Tribolium
castaneum]
Length = 2612
Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 22/84 (26%), Gaps = 7/84 (8%)
Query: 34 AKPTVDVGKDKNTVVALREIASGTLSPDDLEEDF-------IHSLQKHVEIDEPDSPTEN 86
+ V +D + +E A G ED I L+K P E
Sbjct: 551 STANVSSDEDDEDTIQEQEQAEGKQDHQQELEDLQAENEMSIEELRKKYSGPPPSLSDEE 610
Query: 87 SDFSWHKPEALSFGQMSEGDLLEG 110
+ + E D E
Sbjct: 611 DAKMSDDSDDEYEQSVEEPDSSEE 634
>gi|167747164|ref|ZP_02419291.1| hypothetical protein ANACAC_01878 [Anaerostipes caccae DSM 14662]
gi|167654124|gb|EDR98253.1| hypothetical protein ANACAC_01878 [Anaerostipes caccae DSM 14662]
Length = 70
Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 13 VDNRFLLVLLASHRTRHLSQGAKPTV-DVGKDKNTVVALREIASGTLSP 60
+ +R+ LV+ ++ R R L G P D + K A+ EI S +
Sbjct: 14 ITSRYSLVIASAKRARQLIGGDMPLTEDADEQKPLSTAVEEIRSNKVKI 62
>gi|326483110|gb|EGE07120.1| RNA-directed RNA polymerase [Trichophyton equinum CBS 127.97]
Length = 1286
Score = 35.2 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 12/75 (16%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVAL------REIASGTLSPD 61
DC+ RF +V +A R P++++ K ++A R I
Sbjct: 1074 DCL-----RFEVVEMAKERIYSRLNDDCPSINIPKVDEDLIAPWKQTWDRAIQERNSGCS 1128
Query: 62 DLEEDFIHSLQKHVE 76
L D I L++ VE
Sbjct: 1129 KLL-DAIKKLREQVE 1142
>gi|326475512|gb|EGD99521.1| hypothetical protein TESG_06788 [Trichophyton tonsurans CBS 112818]
Length = 1298
Score = 35.2 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 12/75 (16%)
Query: 8 DCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVAL------REIASGTLSPD 61
DC+ RF +V +A R P++++ K ++A R I
Sbjct: 1086 DCL-----RFEVVEMAKERIYSRLNDDCPSINIPKVDEDLIAPWKQTWDRAIQERNSGCS 1140
Query: 62 DLEEDFIHSLQKHVE 76
L D I L++ VE
Sbjct: 1141 KLL-DAIKKLREQVE 1154
>gi|218290473|ref|ZP_03494593.1| DNA-directed RNA polymerase, omega subunit [Alicyclobacillus
acidocaldarius LAA1]
gi|258511300|ref|YP_003184734.1| DNA-directed RNA polymerase, omega subunit [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|218239494|gb|EED06689.1| DNA-directed RNA polymerase, omega subunit [Alicyclobacillus
acidocaldarius LAA1]
gi|257478026|gb|ACV58345.1| DNA-directed RNA polymerase, omega subunit [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 66
Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTL 58
+++ ++++ LV+LA+ R R L +N AL EI G +
Sbjct: 10 LERCNSKYALVVLAAKRARKLQNETLNQPGASTTRNVSRALWEIHDGVV 58
>gi|75764238|ref|ZP_00743793.1| DNA-directed RNA polymerase omega chain [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|218899023|ref|YP_002447434.1| DNA-directed RNA polymerase, omega subunit [Bacillus cereus
G9842]
gi|228902374|ref|ZP_04066530.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
IBL 4222]
gi|228909695|ref|ZP_04073518.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
IBL 200]
gi|228966820|ref|ZP_04127864.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
serovar sotto str. T04001]
gi|226699542|sp|B7IUM9|RPOZ_BACC2 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|74488276|gb|EAO51937.1| DNA-directed RNA polymerase omega chain [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|218541437|gb|ACK93831.1| DNA-directed RNA polymerase, omega subunit [Bacillus cereus
G9842]
gi|228792919|gb|EEM40477.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228849984|gb|EEM94815.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
IBL 200]
gi|228857272|gb|EEN01776.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
IBL 4222]
Length = 70
Score = 34.8 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSP 60
++ + K+D+++ LV +A+ R R + V+ K AL EI + LS
Sbjct: 6 IDSLLQKIDSKYTLVTVAAKRAREMQLANNCVVEQPVSHKCVGKALEEIDAEVLSY 61
>gi|297621395|ref|YP_003709532.1| Farnesyltranstransferase [Waddlia chondrophila WSU 86-1044]
gi|297376696|gb|ADI38526.1| Farnesyltranstransferase [Waddlia chondrophila WSU 86-1044]
Length = 294
Score = 34.8 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 32 QGAKPTVDVGKDKNTVVALREIASGTLSPDDLEEDFIHSLQKHVEIDE 79
+GA+ + D +K+T VAL I S D L + I SL + + E
Sbjct: 233 RGAEISSDRENNKSTYVALLGIEEARKSADQLFNNAIKSLDQLSQETE 280
>gi|229086425|ref|ZP_04218599.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus
Rock3-44]
gi|228696880|gb|EEL49691.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus
Rock3-44]
Length = 70
Score = 34.8 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLS-QGAKPTVDVGKDKNTVVALREIASGTLSPDDLE 64
++ + K+D+++ LV +A+ R R + K AL EI + +L+ E
Sbjct: 6 IDSLLKKIDSKYTLVTVAAKRAREMQIANNCAIEKPVSHKCVGKALEEIDAESLNYVPSE 65
Query: 65 E 65
E
Sbjct: 66 E 66
>gi|237752628|ref|ZP_04583108.1| predicted protein [Helicobacter winghamensis ATCC BAA-430]
gi|229376117|gb|EEO26208.1| predicted protein [Helicobacter winghamensis ATCC BAA-430]
Length = 75
Score = 34.8 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 10 IDKVD-NRFLLVLLASHRTRHLSQGAKPTVDV--GKDKNTVVALREIASGTLSPDDLEE 65
+++V+ +R+LL + R LS+GAKP V K + +AL E+A G + D +EE
Sbjct: 11 LEQVNGDRYLLSNILFARIDELSRGAKPLVSKSVKTSKLSDIALLEVAEGKIGLDKIEE 69
>gi|197294244|ref|YP_001798785.1| Putative DNA-directed RNA polymerase,omega subunit [Candidatus
Phytoplasma australiense]
gi|171853571|emb|CAM11441.1| Putative DNA-directed RNA polymerase,omega subunit [Candidatus
Phytoplasma australiense]
Length = 68
Score = 34.8 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGT 57
++ +DKVD+++ LV +AS + + + +K AL EI +
Sbjct: 11 IDKLLDKVDSKYKLVHIASKIAHVIEKDKISLPECKSEKVIGKALEEIINDK 62
>gi|325110887|ref|YP_004271955.1| DNA-directed RNA polymerase subunit omega [Planctomyces
brasiliensis DSM 5305]
gi|324971155|gb|ADY61933.1| DNA-directed RNA polymerase subunit omega [Planctomyces
brasiliensis DSM 5305]
Length = 90
Score = 34.8 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 7 EDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEED 66
E+ ++KV RF L + R L++GA+P + + ++EI + D
Sbjct: 8 EEIVNKVGGRFKLSTIIQKRMVALNRGARPLTETPTKNLMQIVIQEIMEDKIYLDRTGNV 67
Query: 67 FIHS 70
I
Sbjct: 68 AIKG 71
>gi|27467804|ref|NP_764441.1| DNA-directed RNA polymerase subunit omega [Staphylococcus
epidermidis ATCC 12228]
gi|32171624|sp|Q8CSW3|RPOZ_STAES RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|27315348|gb|AAO04483.1|AE016746_273 DNA-directed RNA polymerase subunit omega [Staphylococcus
epidermidis ATCC 12228]
gi|329729980|gb|EGG66371.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus
epidermidis VCU144]
gi|329736301|gb|EGG72573.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus
epidermidis VCU028]
Length = 70
Score = 34.8 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 12 KVDNRFLLVLLASHRTRHLSQGAK-PTVDVGKDKNTV-VALREIASGTLSP 60
KV++++L+ A+ R R L + + +D V AL EIA G + P
Sbjct: 12 KVNSKYLIATTAAKRARELDERRETALLDQYHSSKPVGKALEEIADGKIEP 62
>gi|229162806|ref|ZP_04290763.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus
R309803]
gi|228620688|gb|EEK77557.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus
R309803]
Length = 70
Score = 34.8 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSP 60
++ + K+D+++ LV +A+ R R + ++ K AL EI + LS
Sbjct: 6 IDSLLTKIDSKYTLVTVAAKRAREMQLANNCVIEQPVSHKCVGKALEEIDAEVLSY 61
>gi|15924200|ref|NP_371734.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus Mu50]
gi|15926793|ref|NP_374326.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus N315]
gi|21282822|ref|NP_645910.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus MW2]
gi|49483373|ref|YP_040597.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus MRSA252]
gi|49486049|ref|YP_043270.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus MSSA476]
gi|57651779|ref|YP_186085.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus COL]
gi|82750815|ref|YP_416556.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
RF122]
gi|87161403|ref|YP_493800.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|88194916|ref|YP_499716.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|148267701|ref|YP_001246644.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus JH9]
gi|150393759|ref|YP_001316434.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus JH1]
gi|156979531|ref|YP_001441790.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus Mu3]
gi|161509383|ref|YP_001575042.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|221142000|ref|ZP_03566493.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus str. JKD6009]
gi|253315568|ref|ZP_04838781.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus str. CF-Marseille]
gi|253731827|ref|ZP_04865992.1| DNA-directed RNA polymerase omega chain [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|253733552|ref|ZP_04867717.1| DNA-directed RNA polymerase omega chain [Staphylococcus aureus
subsp. aureus TCH130]
gi|255005997|ref|ZP_05144598.2| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus Mu50-omega]
gi|257425263|ref|ZP_05601688.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257427923|ref|ZP_05604321.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257430556|ref|ZP_05606938.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus 68-397]
gi|257433317|ref|ZP_05609675.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus E1410]
gi|257436159|ref|ZP_05612206.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus M876]
gi|257795734|ref|ZP_05644713.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
A9781]
gi|258415958|ref|ZP_05682228.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
A9763]
gi|258419705|ref|ZP_05682672.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
A9719]
gi|258423747|ref|ZP_05686633.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
A9635]
gi|258438747|ref|ZP_05689900.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
A9299]
gi|258444547|ref|ZP_05692876.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
A8115]
gi|258447620|ref|ZP_05695764.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
A6300]
gi|258449462|ref|ZP_05697565.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
A6224]
gi|258452507|ref|ZP_05700513.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
A5948]
gi|258454841|ref|ZP_05702805.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
A5937]
gi|262048112|ref|ZP_06020999.1| hypothetical protein SAD30_1888 [Staphylococcus aureus D30]
gi|262051844|ref|ZP_06024060.1| hypothetical protein SA930_1394 [Staphylococcus aureus 930918-3]
gi|269202825|ref|YP_003282094.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus ED98]
gi|282892696|ref|ZP_06300931.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
A8117]
gi|282903763|ref|ZP_06311651.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus C160]
gi|282905527|ref|ZP_06313382.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282908503|ref|ZP_06316333.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282910782|ref|ZP_06318585.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282913985|ref|ZP_06321772.1| conserved domain protein [Staphylococcus aureus subsp. aureus
M899]
gi|282916459|ref|ZP_06324221.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus D139]
gi|282918907|ref|ZP_06326642.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus C427]
gi|282919992|ref|ZP_06327721.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
A9765]
gi|282924030|ref|ZP_06331706.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus C101]
gi|282927550|ref|ZP_06335166.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
A10102]
gi|283770271|ref|ZP_06343163.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus H19]
gi|283957951|ref|ZP_06375402.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus A017934/97]
gi|284024134|ref|ZP_06378532.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus 132]
gi|293501018|ref|ZP_06666869.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus 58-424]
gi|293509977|ref|ZP_06668685.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus M809]
gi|293526565|ref|ZP_06671250.1| conserved domain protein [Staphylococcus aureus subsp. aureus
M1015]
gi|294848203|ref|ZP_06788950.1| DNA-directed RNA polymerase [Staphylococcus aureus A9754]
gi|295407148|ref|ZP_06816949.1| DNA-directed RNA polymerase [Staphylococcus aureus A8819]
gi|295427695|ref|ZP_06820327.1| DNA-directed RNA polymerase [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|296275231|ref|ZP_06857738.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus MR1]
gi|297208146|ref|ZP_06924577.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|297245966|ref|ZP_06929825.1| DNA-directed RNA polymerase [Staphylococcus aureus A8796]
gi|297591346|ref|ZP_06949984.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus MN8]
gi|300912226|ref|ZP_07129669.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus TCH70]
gi|304381227|ref|ZP_07363880.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|54039287|sp|P66726|RPOZ_STAAN RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|54039288|sp|P66727|RPOZ_STAAW RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|54042196|sp|P66725|RPOZ_STAAM RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|56749525|sp|Q6GA03|RPOZ_STAAS RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|56749572|sp|Q6GHM5|RPOZ_STAAR RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|81694668|sp|Q5HGM2|RPOZ_STAAC RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|116247697|sp|Q2FHM8|RPOZ_STAA3 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|118587622|sp|Q2YXF8|RPOZ_STAAB RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|123003512|sp|Q2G1T9|RPOZ_STAA8 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166230367|sp|A7X1G4|RPOZ_STAA1 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|189044004|sp|A6U129|RPOZ_STAA2 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|189044005|sp|A5IS95|RPOZ_STAA9 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|189044006|sp|A8Z3P7|RPOZ_STAAT RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|13701009|dbj|BAB42305.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus N315]
gi|14246980|dbj|BAB57372.1| probable DNA-directed RNA polymerase omega chain [Staphylococcus
aureus subsp. aureus Mu50]
gi|21204260|dbj|BAB94958.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus MW2]
gi|49241502|emb|CAG40188.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus MRSA252]
gi|49244492|emb|CAG42921.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus MSSA476]
gi|57285965|gb|AAW38059.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus COL]
gi|82656346|emb|CAI80763.1| probable DNA-directed RNA polymerase omega chain [Staphylococcus
aureus RF122]
gi|87127377|gb|ABD21891.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|87202474|gb|ABD30284.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|147740770|gb|ABQ49068.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus JH9]
gi|149946211|gb|ABR52147.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus JH1]
gi|156721666|dbj|BAF78083.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus Mu3]
gi|160368192|gb|ABX29163.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|253724426|gb|EES93155.1| DNA-directed RNA polymerase omega chain [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|253728606|gb|EES97335.1| DNA-directed RNA polymerase omega chain [Staphylococcus aureus
subsp. aureus TCH130]
gi|257271720|gb|EEV03858.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257274764|gb|EEV06251.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257278684|gb|EEV09303.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus 68-397]
gi|257281410|gb|EEV11547.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus E1410]
gi|257284441|gb|EEV14561.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus M876]
gi|257789706|gb|EEV28046.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
A9781]
gi|257839294|gb|EEV63768.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
A9763]
gi|257844290|gb|EEV68672.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
A9719]
gi|257845979|gb|EEV70007.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
A9635]
gi|257848006|gb|EEV71999.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
A9299]
gi|257850040|gb|EEV73993.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
A8115]
gi|257853811|gb|EEV76770.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
A6300]
gi|257857450|gb|EEV80348.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
A6224]
gi|257859725|gb|EEV82567.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
A5948]
gi|257863224|gb|EEV85988.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
A5937]
gi|259160245|gb|EEW45273.1| hypothetical protein SA930_1394 [Staphylococcus aureus 930918-3]
gi|259163678|gb|EEW48233.1| hypothetical protein SAD30_1888 [Staphylococcus aureus D30]
gi|262075115|gb|ACY11088.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus ED98]
gi|269940702|emb|CBI49083.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus TW20]
gi|282314002|gb|EFB44394.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus C101]
gi|282316717|gb|EFB47091.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus C427]
gi|282319899|gb|EFB50247.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus D139]
gi|282322053|gb|EFB52377.1| conserved domain protein [Staphylococcus aureus subsp. aureus
M899]
gi|282325387|gb|EFB55696.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282327565|gb|EFB57848.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282330819|gb|EFB60333.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282590553|gb|EFB95630.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
A10102]
gi|282594708|gb|EFB99692.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
A9765]
gi|282595381|gb|EFC00345.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus C160]
gi|282764693|gb|EFC04818.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
A8117]
gi|283460418|gb|EFC07508.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus H19]
gi|283470421|emb|CAQ49632.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus ST398]
gi|283790100|gb|EFC28917.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus A017934/97]
gi|285816892|gb|ADC37379.1| DNA-directed RNA polymerase omega subunit [Staphylococcus aureus
04-02981]
gi|290920637|gb|EFD97700.1| conserved domain protein [Staphylococcus aureus subsp. aureus
M1015]
gi|291096023|gb|EFE26284.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus 58-424]
gi|291466921|gb|EFF09439.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus M809]
gi|294825003|gb|EFG41425.1| DNA-directed RNA polymerase [Staphylococcus aureus A9754]
gi|294968001|gb|EFG44029.1| DNA-directed RNA polymerase [Staphylococcus aureus A8819]
gi|295128053|gb|EFG57687.1| DNA-directed RNA polymerase [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|296887389|gb|EFH26291.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|297177130|gb|EFH36384.1| DNA-directed RNA polymerase [Staphylococcus aureus A8796]
gi|297576232|gb|EFH94948.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus MN8]
gi|298694503|gb|ADI97725.1| probable DNA-directed RNA polymerase omega chain [Staphylococcus
aureus subsp. aureus ED133]
gi|300886472|gb|EFK81674.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus TCH70]
gi|302332814|gb|ADL23007.1| DNA-directed RNA polymerase omega subunit [Staphylococcus aureus
subsp. aureus JKD6159]
gi|302751033|gb|ADL65210.1| DNA-directed RNA polymerase omega subunit [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|304340210|gb|EFM06151.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|312438413|gb|ADQ77484.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus TCH60]
gi|312829604|emb|CBX34446.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus ECT-R 2]
gi|315131001|gb|EFT86985.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus CGS03]
gi|315194096|gb|EFU24489.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus CGS00]
gi|315198447|gb|EFU28776.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus CGS01]
gi|320140975|gb|EFW32822.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320144310|gb|EFW36076.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus MRSA177]
gi|323440984|gb|EGA98691.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
O11]
gi|323442301|gb|EGA99931.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
O46]
gi|329313879|gb|AEB88292.1| DNA-directed RNA polymerase subunit omega [Staphylococcus aureus
subsp. aureus T0131]
gi|329724756|gb|EGG61261.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus 21189]
gi|329727479|gb|EGG63935.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus 21172]
gi|329728848|gb|EGG65269.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus aureus
subsp. aureus 21193]
Length = 72
Score = 34.8 bits (79), Expect = 4.3, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 12 KVDNRFLLVLLASHRTRHLSQG--AKPTVDVGKDKNTVVALREIASGTLSP 60
++ +++L+ A+ R R + + + + K AL EIA G + P
Sbjct: 12 QIKSKYLIATTAAKRAREIDEQPETELLSEYHSFKPVGRALEEIADGKIRP 62
>gi|156849043|ref|XP_001647402.1| hypothetical protein Kpol_1018p76 [Vanderwaltozyma polyspora DSM
70294]
gi|156118088|gb|EDO19544.1| hypothetical protein Kpol_1018p76 [Vanderwaltozyma polyspora DSM
70294]
Length = 350
Score = 34.5 bits (78), Expect = 4.4, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 7/90 (7%)
Query: 18 LLVLLASHRTRHLSQGAKPTVDVG--KDKNTVVALREIASGTLSPDDLEEDFIHSLQKHV 75
LV A R + L + V+ DK L + G + L+ + L+
Sbjct: 243 ELVKEAHKRAKQLETKSVKNVERDQMGDK-----LGRVHLGKQDLNKLQTRKMKGLKSRF 297
Query: 76 EIDEPDSPTENSDFSWHKPEALSFGQMSEG 105
+ +P+ +D + E
Sbjct: 298 DQIDPEEEDYLNDSEEELNAHNNDDTYGED 327
>gi|78776917|ref|YP_393232.1| RNA polymerase Rpb6 [Sulfurimonas denitrificans DSM 1251]
gi|78497457|gb|ABB43997.1| RNA polymerase Rpb6 [Sulfurimonas denitrificans DSM 1251]
Length = 72
Score = 34.5 bits (78), Expect = 4.4, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 10 IDKVDN--RFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSPD 61
+D N R+ L + + RT L GA ++ K K +AL EIA G +
Sbjct: 11 LDNNPNMDRYQLAIAVAKRTDELLNGANSKLNVSKKIKTADLALMEIAEGLIIIK 65
>gi|229815188|ref|ZP_04445524.1| hypothetical protein COLINT_02234 [Collinsella intestinalis DSM
13280]
gi|229809198|gb|EEP44964.1| hypothetical protein COLINT_02234 [Collinsella intestinalis DSM
13280]
Length = 91
Score = 34.5 bits (78), Expect = 4.6, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 15/71 (21%)
Query: 6 VEDCIDKVD-NRFLLVLLASHRTRHLSQ-----GAKPTVDVGKDKNTV---------VAL 50
++D ++K D NRFLL LAS R ++ ++ D TV +A+
Sbjct: 5 IDDLLEKTDHNRFLLSSLASQRASDINNMLRGQHSRVLAVQDTDDLTVMLSGKDTISMAM 64
Query: 51 REIASGTLSPD 61
EI GT+S D
Sbjct: 65 EEIVDGTISYD 75
>gi|242003056|ref|XP_002422594.1| DNA double-strand break repair Rad50 ATPase, putative [Pediculus
humanus corporis]
gi|212505395|gb|EEB09856.1| DNA double-strand break repair Rad50 ATPase, putative [Pediculus
humanus corporis]
Length = 870
Score = 34.5 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 50 LREIASGTLSPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLE 109
+ E+ ++ L+++ I LQK +EI E E + + + +++E L+
Sbjct: 400 VEELKEESI----LKDEKIKELQKIIEIYEKKDIEEMARKVEDEERRIREAEINEKIRLQ 455
Query: 110 GINNIVTPDKRDD 122
+ +R++
Sbjct: 456 EEEKLRIAKEREE 468
>gi|229019068|ref|ZP_04175906.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus
AH1273]
gi|229025312|ref|ZP_04181731.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus
AH1272]
gi|228736003|gb|EEL86579.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus
AH1272]
gi|228742236|gb|EEL92398.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus
AH1273]
Length = 70
Score = 34.5 bits (78), Expect = 5.1, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSPDDLE 64
++ + K+D+++ LV +A+ R R + ++ K +L EI + L E
Sbjct: 6 IDSLLTKIDSKYTLVTVAAKRAREMQLANNCVIEQPVSHKCVGKSLEEIDAEVLKYVPSE 65
Query: 65 EDFIH 69
+ I
Sbjct: 66 DKIID 70
>gi|119492959|ref|ZP_01623989.1| peptidoglycan binding domain protein [Lyngbya sp. PCC 8106]
gi|119452885|gb|EAW34059.1| peptidoglycan binding domain protein [Lyngbya sp. PCC 8106]
Length = 343
Score = 34.5 bits (78), Expect = 5.3, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 49 ALREIASGTLSPDDLEEDFIHSLQKHVEIDEPDSPT---ENSDFSWHKPEALSFGQMSEG 105
ALREI+ +DL++ + QK + P+ E + + L+ Q+SEG
Sbjct: 133 ALREISE---KFEDLDDSVVLRFQKRQDYRPPNLLAKYGEKLEEFISERLNLNQPQVSEG 189
Query: 106 DLLEGINN 113
D L+ +
Sbjct: 190 DDLKVYAS 197
>gi|110668829|ref|YP_658640.1| DNA-directed RNA polymerase subunit K [Haloquadratum walsbyi DSM
16790]
gi|109626576|emb|CAJ53040.1| DNA-directed RNA polymerase subunit K [Haloquadratum walsbyi DSM
16790]
Length = 65
Score = 34.5 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 15 NRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEED 66
NR+ + R +S GA VD + + +VA E +G L +ED
Sbjct: 13 NRYEKARILGARALQISYGAPVLVDTEQSEPILVAAEEYDAGVLPFTVKQED 64
>gi|189219133|ref|YP_001939774.1| DNA-directed RNA polymerase, subunit K/omega [Methylacidiphilum
infernorum V4]
gi|189185991|gb|ACD83176.1| DNA-directed RNA polymerase, subunit K/omega [Methylacidiphilum
infernorum V4]
Length = 83
Score = 34.5 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTLSPDDLEEDFI 68
+ KV+ +LV + S R R L++GAKP V+V N + +AL+EIA G LS + + ++
Sbjct: 17 LAKVEIPEVLVNMVSRRVRLLAKGAKPLVEVPPQWNYMQIALKEIAEGRLSWELVPQEEK 76
Query: 69 HS 70
Sbjct: 77 EE 78
>gi|254459283|ref|ZP_05072704.1| RNA polymerases K / 14 to 18 kDa subunit [Campylobacterales
bacterium GD 1]
gi|207083896|gb|EDZ61187.1| RNA polymerases K / 14 to 18 kDa subunit [Campylobacterales
bacterium GD 1]
Length = 73
Score = 34.5 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 15 NRFLLVLLASHRTRHLSQGAKPT--VDVGKDKNTVVALREIASGTLSPD 61
+R+ L L + R+ L GA +D K +AL EIA G +
Sbjct: 18 DRYQLALAVAKRSDELLNGATSKLNIDPKSIKAADLALMEIAQGLIKIK 66
>gi|188996804|ref|YP_001931055.1| DNA-directed RNA polymerase, omega subunit [Sulfurihydrogenibium
sp. YO3AOP1]
gi|188931871|gb|ACD66501.1| DNA-directed RNA polymerase, omega subunit [Sulfurihydrogenibium
sp. YO3AOP1]
Length = 70
Score = 34.5 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 3 RTTVEDCIDKVDNRFLLVLLASHRTRHLSQ-GAKPTVDVGKD--KNTVVALREIASGTLS 59
R +E+ + KV +R+ LV AS L + G + + K TV+A+ +IA G S
Sbjct: 4 RPLIEEALKKVKSRYELVHAASKLAIELYETGLETYITEEGIPLKKTVIAIDKIAKGEAS 63
Query: 60 P 60
Sbjct: 64 I 64
>gi|320335690|ref|YP_004172401.1| DNA-directed RNA polymerase subunit omega [Deinococcus
maricopensis DSM 21211]
gi|319756979|gb|ADV68736.1| DNA-directed RNA polymerase subunit omega [Deinococcus
maricopensis DSM 21211]
Length = 99
Score = 34.5 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 1 MARTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAK----PTVDVGKDKNTVVALREIASG 56
MA ++ + D+++ L ++ + R L GA P V V A+RE+A G
Sbjct: 1 MAEKDIDKLLSLTDSKYRLSVVTAKRAIQLRAGAPSVLAPEVRVKTRNLVTQAMRELAGG 60
Query: 57 TLSPDDLEEDFIHSLQKHVE 76
L + E I + +
Sbjct: 61 KL---QVGEGLIDEDRMQQD 77
>gi|118384838|ref|XP_001025558.1| zinc finger protein [Tetrahymena thermophila]
gi|89307325|gb|EAS05313.1| zinc finger protein [Tetrahymena thermophila SB210]
Length = 833
Score = 34.5 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 11 DKVDNRFLL-----VLLASH-----RTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
D+V+N F L V+L R ++ + G P + + NT + + +
Sbjct: 601 DQVEN-FNLHNYQAVVLNKKDSQSPRKKNNTIGISPLIQSINNSNTSIVSERLQDSQMEQ 659
Query: 61 DDLEEDFIHSLQKHVEIDEPDSPTENSDFSW 91
+ ++ + Q + + DE D
Sbjct: 660 SIIIDEDVQKCQIYTQEDENSKNINPEDLQN 690
>gi|237743069|ref|ZP_04573550.1| DNA-directed RNA polymerase subunit omega [Fusobacterium sp. 7_1]
gi|289766422|ref|ZP_06525800.1| DNA-directed RNA polymerase subunit omega [Fusobacterium sp. D11]
gi|229433365|gb|EEO43577.1| DNA-directed RNA polymerase subunit omega [Fusobacterium sp. 7_1]
gi|289717977|gb|EFD81989.1| DNA-directed RNA polymerase subunit omega [Fusobacterium sp. D11]
Length = 63
Score = 34.5 bits (78), Expect = 5.8, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 10 IDKVDNRFLLVLLASHRTRH-----LSQGAKPTVDVGKDKNTV---VALREIASGTLSPD 61
+ K+ N+++L ++A R R + +G +P DK +EI +G +S +
Sbjct: 1 MAKIPNKYILTIIAGERARERAKERMERGGEPLPLTKYDKKDTEMKKVFKEILAGKVSYE 60
Query: 62 D 62
D
Sbjct: 61 D 61
>gi|89101354|ref|ZP_01174146.1| DNA-directed RNA polymerase, omega subunit [Bacillus sp. NRRL
B-14911]
gi|89083932|gb|EAR63141.1| DNA-directed RNA polymerase, omega subunit [Bacillus sp. NRRL
B-14911]
Length = 66
Score = 34.5 bits (78), Expect = 5.8, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDV 40
++ + K+D+++ LV +A+ R R L AKP +D
Sbjct: 10 IDSLMTKIDSKYSLVSVAAKRARKLQIDAKPQLDK 44
>gi|30263873|ref|NP_846250.1| DNA-directed RNA polymerase subunit omega [Bacillus anthracis
str. Ames]
gi|47529301|ref|YP_020650.1| DNA-directed RNA polymerase subunit omega [Bacillus anthracis
str. 'Ames Ancestor']
gi|49186720|ref|YP_029972.1| DNA-directed RNA polymerase subunit omega [Bacillus anthracis
str. Sterne]
gi|49479404|ref|YP_037931.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|52141617|ref|YP_085211.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus E33L]
gi|65321197|ref|ZP_00394156.1| COG1758: DNA-directed RNA polymerase, subunit K/omega [Bacillus
anthracis str. A2012]
gi|118479092|ref|YP_896243.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
str. Al Hakam]
gi|165872295|ref|ZP_02216932.1| DNA-directed RNA polymerase, omega subunit [Bacillus anthracis
str. A0488]
gi|167636415|ref|ZP_02394714.1| DNA-directed RNA polymerase, omega subunit [Bacillus anthracis
str. A0442]
gi|167641128|ref|ZP_02399383.1| DNA-directed RNA polymerase, omega subunit [Bacillus anthracis
str. A0193]
gi|170688813|ref|ZP_02880016.1| DNA-directed RNA polymerase, omega subunit [Bacillus anthracis
str. A0465]
gi|170708796|ref|ZP_02899232.1| DNA-directed RNA polymerase, omega subunit [Bacillus anthracis
str. A0389]
gi|177654917|ref|ZP_02936634.1| DNA-directed RNA polymerase, omega subunit [Bacillus anthracis
str. A0174]
gi|190566067|ref|ZP_03018986.1| DNA-directed RNA polymerase, omega subunit [Bacillus anthracis
Tsiankovskii-I]
gi|196035887|ref|ZP_03103289.1| DNA-directed RNA polymerase, omega subunit [Bacillus cereus W]
gi|196038698|ref|ZP_03106006.1| DNA-directed RNA polymerase, omega subunit [Bacillus cereus
NVH0597-99]
gi|196047425|ref|ZP_03114637.1| DNA-directed RNA polymerase, omega subunit [Bacillus cereus
03BB108]
gi|206976701|ref|ZP_03237605.1| DNA-directed RNA polymerase, omega subunit [Bacillus cereus
H3081.97]
gi|217961290|ref|YP_002339858.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus AH187]
gi|218905000|ref|YP_002452834.1| DNA-directed RNA polymerase, omega subunit [Bacillus cereus
AH820]
gi|222097315|ref|YP_002531372.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus Q1]
gi|225865851|ref|YP_002751229.1| DNA-directed RNA polymerase, omega subunit [Bacillus cereus
03BB102]
gi|227813222|ref|YP_002813231.1| DNA-directed RNA polymerase, omega subunit [Bacillus anthracis
str. CDC 684]
gi|228916507|ref|ZP_04080073.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228928918|ref|ZP_04091950.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935184|ref|ZP_04098011.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228947589|ref|ZP_04109879.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229092914|ref|ZP_04224048.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus
Rock3-42]
gi|229123384|ref|ZP_04252588.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus
95/8201]
gi|229140516|ref|ZP_04269071.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus
BDRD-ST26]
gi|229186110|ref|ZP_04313279.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus BGSC
6E1]
gi|229197981|ref|ZP_04324695.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus m1293]
gi|229602776|ref|YP_002868107.1| DNA-directed RNA polymerase, omega subunit [Bacillus anthracis
str. A0248]
gi|254683421|ref|ZP_05147281.1| DNA-directed RNA polymerase subunit omega [Bacillus anthracis
str. CNEVA-9066]
gi|254721402|ref|ZP_05183191.1| DNA-directed RNA polymerase subunit omega [Bacillus anthracis
str. A1055]
gi|254735909|ref|ZP_05193615.1| DNA-directed RNA polymerase subunit omega [Bacillus anthracis
str. Western North America USA6153]
gi|254739843|ref|ZP_05197536.1| DNA-directed RNA polymerase subunit omega [Bacillus anthracis
str. Kruger B]
gi|254751033|ref|ZP_05203072.1| DNA-directed RNA polymerase subunit omega [Bacillus anthracis
str. Vollum]
gi|254756698|ref|ZP_05208727.1| DNA-directed RNA polymerase subunit omega [Bacillus anthracis
str. Australia 94]
gi|301055361|ref|YP_003793572.1| DNA-directed RNA polymerase subunit omega [Bacillus anthracis CI]
gi|41688658|sp|Q81WG8|RPOZ_BACAN RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|81613623|sp|Q6HEU5|RPOZ_BACHK RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|81686550|sp|Q636F6|RPOZ_BACCZ RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|166229346|sp|A0RHP3|RPOZ_BACAH RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226699541|sp|B7JJV7|RPOZ_BACC0 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|226699544|sp|B7HLK3|RPOZ_BACC7 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|254809281|sp|B9IVU6|RPOZ_BACCQ RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|254809282|sp|C1EP94|RPOZ_BACC3 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|254809283|sp|C3L757|RPOZ_BACAC RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|254809284|sp|C3P641|RPOZ_BACAA RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|30258517|gb|AAP27736.1| DNA-directed RNA polymerase, omega subunit [Bacillus anthracis
str. Ames]
gi|47504449|gb|AAT33125.1| DNA-directed RNA polymerase, omega subunit [Bacillus anthracis
str. 'Ames Ancestor']
gi|49180647|gb|AAT56023.1| DNA-directed RNA polymerase, omega subunit [Bacillus anthracis
str. Sterne]
gi|49330960|gb|AAT61606.1| DNA-directed RNA polymerase, omega subunit [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|51975086|gb|AAU16636.1| DNA-directed RNA polymerase, omega subunit [Bacillus cereus E33L]
gi|118418317|gb|ABK86736.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
str. Al Hakam]
gi|164711971|gb|EDR17511.1| DNA-directed RNA polymerase, omega subunit [Bacillus anthracis
str. A0488]
gi|167510908|gb|EDR86299.1| DNA-directed RNA polymerase, omega subunit [Bacillus anthracis
str. A0193]
gi|167528157|gb|EDR90944.1| DNA-directed RNA polymerase, omega subunit [Bacillus anthracis
str. A0442]
gi|170126281|gb|EDS95172.1| DNA-directed RNA polymerase, omega subunit [Bacillus anthracis
str. A0389]
gi|170667168|gb|EDT17928.1| DNA-directed RNA polymerase, omega subunit [Bacillus anthracis
str. A0465]
gi|172080428|gb|EDT65515.1| DNA-directed RNA polymerase, omega subunit [Bacillus anthracis
str. A0174]
gi|190562986|gb|EDV16952.1| DNA-directed RNA polymerase, omega subunit [Bacillus anthracis
Tsiankovskii-I]
gi|195991536|gb|EDX55502.1| DNA-directed RNA polymerase, omega subunit [Bacillus cereus W]
gi|196021733|gb|EDX60428.1| DNA-directed RNA polymerase, omega subunit [Bacillus cereus
03BB108]
gi|196030421|gb|EDX69020.1| DNA-directed RNA polymerase, omega subunit [Bacillus cereus
NVH0597-99]
gi|206745011|gb|EDZ56414.1| DNA-directed RNA polymerase, omega subunit [Bacillus cereus
H3081.97]
gi|217063743|gb|ACJ77993.1| DNA-directed RNA polymerase, omega subunit [Bacillus cereus
AH187]
gi|218537052|gb|ACK89450.1| DNA-directed RNA polymerase, omega subunit [Bacillus cereus
AH820]
gi|221241373|gb|ACM14083.1| DNA-directed RNA polymerase, omega subunit [Bacillus cereus Q1]
gi|225788502|gb|ACO28719.1| DNA-directed RNA polymerase, omega subunit [Bacillus cereus
03BB102]
gi|227006021|gb|ACP15764.1| DNA-directed RNA polymerase, omega subunit [Bacillus anthracis
str. CDC 684]
gi|228585460|gb|EEK43564.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus m1293]
gi|228597286|gb|EEK54937.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus BGSC
6E1]
gi|228643077|gb|EEK99353.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus
BDRD-ST26]
gi|228660160|gb|EEL15796.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus
95/8201]
gi|228690536|gb|EEL44319.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus
Rock3-42]
gi|228812109|gb|EEM58440.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228824549|gb|EEM70354.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830725|gb|EEM76330.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228843086|gb|EEM88168.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|229267184|gb|ACQ48821.1| DNA-directed RNA polymerase, omega subunit [Bacillus anthracis
str. A0248]
gi|300377530|gb|ADK06434.1| DNA-directed RNA polymerase omega subunit [Bacillus cereus biovar
anthracis str. CI]
gi|324327768|gb|ADY23028.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
serovar finitimus YBT-020]
Length = 70
Score = 34.1 bits (77), Expect = 5.8, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVG-KDKNTVVALREIASGTLSP 60
++ + K+D+++ LV +A+ R R + V+ K AL EI LS
Sbjct: 6 IDSLLTKIDSKYTLVTVAAKRAREMQLANNCVVEKPVSHKCVGKALEEIDMEALSY 61
>gi|195157198|ref|XP_002019483.1| GL12419 [Drosophila persimilis]
gi|194116074|gb|EDW38117.1| GL12419 [Drosophila persimilis]
Length = 433
Score = 34.1 bits (77), Expect = 6.1, Method: Composition-based stats.
Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 19/100 (19%)
Query: 3 RTTVEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDD 62
R TV++ I +++ + +VL K + LR++ + D+
Sbjct: 26 RITVDEQIVRLNEQMDMVL-------------------ENQKQIIETLRKLTNSGSKADE 66
Query: 63 LEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQM 102
E I + + + + + P+ F M
Sbjct: 67 SRESLIEEEELQKFPLTEIEQLDIVEEALNDPDNRYFQTM 106
>gi|296110087|ref|YP_003617036.1| prolyl-tRNA synthetase [Methanocaldococcus infernus ME]
gi|295434901|gb|ADG14072.1| prolyl-tRNA synthetase [Methanocaldococcus infernus ME]
Length = 451
Score = 34.1 bits (77), Expect = 6.2, Method: Composition-based stats.
Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 7/95 (7%)
Query: 28 RHLSQGAKPTVDVGKDKNTVVALREIASGTLS------PDDLEEDFIHSLQKHVEIDEPD 81
R + +G V + V+ E+ + L+E +K + I + +
Sbjct: 341 RDIEEGKITLVRRDTGEKIVIEESEL-EEKVRETLEDISKRLKESAKERFKKFITICDVE 399
Query: 82 SPTENSDFSWHKPEALSFGQMSEGDLLEGINNIVT 116
E + + + +L E ++ V
Sbjct: 400 EAKEMLEKKRGIILVPYDNSIYKEELEEKVDAKVL 434
>gi|228475087|ref|ZP_04059815.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus
hominis SK119]
gi|314936627|ref|ZP_07843974.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus
hominis subsp. hominis C80]
gi|228271072|gb|EEK12460.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus
hominis SK119]
gi|313655246|gb|EFS18991.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus
hominis subsp. hominis C80]
Length = 70
Score = 34.1 bits (77), Expect = 6.5, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 12 KVDNRFLLVLLASHRTRHLSQG-AKPTVDVGKDKNTV-VALREIASGTLSP 60
++++++L+ A+ R R L + ++ V AL EIASG +SP
Sbjct: 12 QINSKYLIATTAAKRARELDEKPETALLNGYHSAKPVGEALEEIASGKISP 62
>gi|210633922|ref|ZP_03297916.1| hypothetical protein COLSTE_01833 [Collinsella stercoris DSM
13279]
gi|210159014|gb|EEA89985.1| hypothetical protein COLSTE_01833 [Collinsella stercoris DSM
13279]
Length = 91
Score = 34.1 bits (77), Expect = 6.5, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 15/71 (21%)
Query: 6 VEDCIDKVD-NRFLLVLLASHRTRHLSQ--------------GAKPTVDVGKDKNTVVAL 50
++D ++K D NRFLL LAS R ++ TV + +A+
Sbjct: 5 IDDLLEKTDHNRFLLSSLASQRACDINNMLRGQHNRVLAVQDTDDLTVMLSGKDTISMAM 64
Query: 51 REIASGTLSPD 61
EI GT+S D
Sbjct: 65 EEIVDGTISYD 75
>gi|91215258|ref|ZP_01252230.1| protein-export membrane protein SecD/SecF [Psychroflexus torquis
ATCC 700755]
gi|91186863|gb|EAS73234.1| protein-export membrane protein SecD/SecF [Psychroflexus torquis
ATCC 700755]
Length = 1006
Score = 34.1 bits (77), Expect = 6.5, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 24/63 (38%)
Query: 53 IASGTLSPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGIN 112
+ + + ++++ + S + VE DE + + S E S+ + L +
Sbjct: 257 VTADAIVSENIKSETEKSEETQVEADEQEETETDDLESLLSSEDEEIEDFSKSNPLLSLV 316
Query: 113 NIV 115
V
Sbjct: 317 QTV 319
>gi|198456267|ref|XP_001360280.2| GA15282 [Drosophila pseudoobscura pseudoobscura]
gi|198135552|gb|EAL24855.2| GA15282 [Drosophila pseudoobscura pseudoobscura]
Length = 785
Score = 34.1 bits (77), Expect = 6.6, Method: Composition-based stats.
Identities = 13/80 (16%), Positives = 31/80 (38%)
Query: 27 TRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEEDFIHSLQKHVEIDEPDSPTEN 86
R G ++ K++ V + + A T+ + + I +K + EP+
Sbjct: 495 ARAGRAGISVSLAGEKERKIVKDIIKNAESTIKNRIIPPEIIEKYRKKLTALEPEIQNIL 554
Query: 87 SDFSWHKPEALSFGQMSEGD 106
+ + A + Q+S+ +
Sbjct: 555 DEEQAERQLAKTEQQLSKTE 574
>gi|195149497|ref|XP_002015694.1| GL11206 [Drosophila persimilis]
gi|194109541|gb|EDW31584.1| GL11206 [Drosophila persimilis]
Length = 785
Score = 34.1 bits (77), Expect = 6.6, Method: Composition-based stats.
Identities = 13/80 (16%), Positives = 31/80 (38%)
Query: 27 TRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEEDFIHSLQKHVEIDEPDSPTEN 86
R G ++ K++ V + + A T+ + + I +K + EP+
Sbjct: 495 ARAGRAGISVSLAGEKERKIVKDIIKNAESTIKNRIIPPEIIEKYRKKLTALEPEIQNIL 554
Query: 87 SDFSWHKPEALSFGQMSEGD 106
+ + A + Q+S+ +
Sbjct: 555 DEEQAERQLAKTEQQLSKTE 574
>gi|18542179|gb|AAL75488.1|AF466202_14 putative pol protein [Zea mays]
Length = 800
Score = 34.1 bits (77), Expect = 6.6, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 39 DVGKDKNTVVALREIASGTLSPDDLEEDFIHSLQKHVEID-EPDSPTENSDFSWHKPEAL 97
++G ++ +ALR ++ G + P + EE + Q + PT+N D + + E
Sbjct: 199 EIGNEEAPCIALRNMSIGDVCPKESEEP--PNAQDQPSSSMQASPPTQNEDEAQNDEEQN 256
Query: 98 SFGQMSEGDLLEGINNIVTPDKRDD 122
+ + D + +K D+
Sbjct: 257 QEDEPPQDDSNNQGGDANDQEKEDE 281
>gi|57866742|ref|YP_188360.1| DNA-directed RNA polymerase subunit omega [Staphylococcus
epidermidis RP62A]
gi|242242493|ref|ZP_04796938.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus
epidermidis W23144]
gi|73917901|sp|Q5HPY0|RPOZ_STAEQ RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|57637400|gb|AAW54188.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus
epidermidis RP62A]
gi|242234067|gb|EES36379.1| DNA-directed RNA polymerase, omega subunit [Staphylococcus
epidermidis W23144]
Length = 70
Score = 34.1 bits (77), Expect = 6.6, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 12 KVDNRFLLVLLASHRTRHLSQGAK-PTVDVGKDKNTV-VALREIASGTLSP 60
KV++++L+ A+ R R L + + +D + V AL EIA G + P
Sbjct: 12 KVNSKYLIATTAAKRARELDERRETALLDQYQSAKPVGKALEEIADGKIEP 62
>gi|70726705|ref|YP_253619.1| DNA-directed RNA polymerase subunit omega [Staphylococcus
haemolyticus JCSC1435]
gi|82581608|sp|Q4L5R2|RPOZ_STAHJ RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|68447429|dbj|BAE05013.1| DNA-directed RNA polymerase subunit omega chain [Staphylococcus
haemolyticus JCSC1435]
Length = 70
Score = 34.1 bits (77), Expect = 6.7, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 12 KVDNRFLLVLLASHRTRHLSQG-AKPTVDVGKDKNTV-VALREIASGTLSP 60
K+++++L+ A+ R R L + + V AL EIASG ++P
Sbjct: 12 KINSKYLIATTAAKRARELDERPETALLSGYHSAKPVGEALEEIASGKITP 62
>gi|293374986|ref|ZP_06621281.1| DNA-directed RNA polymerase, omega subunit [Turicibacter
sanguinis PC909]
gi|325843328|ref|ZP_08167911.1| DNA-directed RNA polymerase, omega subunit [Turicibacter sp.
HGF1]
gi|292646396|gb|EFF64411.1| DNA-directed RNA polymerase, omega subunit [Turicibacter
sanguinis PC909]
gi|325489357|gb|EGC91730.1| DNA-directed RNA polymerase, omega subunit [Turicibacter sp.
HGF1]
Length = 75
Score = 34.1 bits (77), Expect = 6.7, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKD-------KNTVVALREIASGTL 58
++ +DKVD+++ + +A+ R R + + +D K VAL EI +
Sbjct: 9 IDKLLDKVDSKYKIAYIAAKRARQIVDENQSQLDYVDGLPTAKCAKPVGVALEEILYDVV 68
Query: 59 SPDDLEE 65
+ EE
Sbjct: 69 DFELKEE 75
>gi|150865953|ref|XP_001385378.2| Protein involved in (1,3)-beta-glucan synthesis [Scheffersomyces
stipitis CBS 6054]
gi|149387209|gb|ABN67349.2| Protein involved in (1,3)-beta-glucan synthesis [Scheffersomyces
stipitis CBS 6054]
Length = 523
Score = 34.1 bits (77), Expect = 6.7, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 31 SQGAKPTVDVGKDKNTVVALRE-IASGTLSPDD---LEEDFIHSLQKHVEIDEPDSPTEN 86
S G+ P ++V +V RE I L + +E+ I + E
Sbjct: 435 SSGSSPLINVESANKSVTLQRETIIDDKLETETENKIEDKIIKEEPEIASKTEESDDALV 494
Query: 87 SDFSWHKPEALSFGQMSEG 105
+ +PE + SEG
Sbjct: 495 TAEESEQPEDQPLIEGSEG 513
>gi|91201257|emb|CAJ74317.1| similar to DNA-directed RNA polymerase omega chain [Candidatus
Kuenenia stuttgartiensis]
Length = 66
Score = 34.1 bits (77), Expect = 6.8, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDD 62
I++V L L R R L++ A+P ++ D +A E+ + +D
Sbjct: 10 INQVGGPLRLTTLIISRARQLTKKAEPYIETEIDDPVEIAFAELMQNKIMLND 62
>gi|307182305|gb|EFN69606.1| Nuclear protein Hcc-1 [Camponotus floridanus]
Length = 515
Score = 34.1 bits (77), Expect = 7.0, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 64 EEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLLEGINNIVTPDKR 120
+ + + LQ ++ D S E ++ + E L ++ +L ++ V P+KR
Sbjct: 36 KNELVERLQLAIQGDSALSLDETTEEILDEDEVLGDEEI--EELSSKPDSQVLPEKR 90
>gi|256810438|ref|YP_003127807.1| RNA polymerase Rpb6 [Methanocaldococcus fervens AG86]
gi|256793638|gb|ACV24307.1| RNA polymerase Rpb6 [Methanocaldococcus fervens AG86]
Length = 61
Score = 34.1 bits (77), Expect = 7.0, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 16 RFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLE 64
+F + + R+ +S GA T++ +D + +A EI G + +
Sbjct: 9 KFEIARILGARSLQISNGAYATIETKQDSSLKIAYEEIEQGKVPLKPIR 57
>gi|281412540|ref|YP_003346619.1| DNA-directed RNA polymerase, omega subunit [Thermotoga
naphthophila RKU-10]
gi|281373643|gb|ADA67205.1| DNA-directed RNA polymerase, omega subunit [Thermotoga
naphthophila RKU-10]
Length = 79
Score = 34.1 bits (77), Expect = 7.2, Method: Composition-based stats.
Identities = 8/63 (12%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP--DDLEEDF 67
+ K+ ++ + ++ + R + + A+P V + +A E++ + +++ +
Sbjct: 15 LKKIPYKYAIPVVVAKRAEAIREYARPFVITDDENPVSIAFMELSLNYIRIKNEEILKAL 74
Query: 68 IHS 70
I
Sbjct: 75 IPK 77
>gi|296122302|ref|YP_003630080.1| DNA-directed RNA polymerase, omega subunit [Planctomyces
limnophilus DSM 3776]
gi|296014642|gb|ADG67881.1| DNA-directed RNA polymerase, omega subunit [Planctomyces
limnophilus DSM 3776]
Length = 86
Score = 34.1 bits (77), Expect = 7.2, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPD 61
+ KV RF L L R L++GA+P VD+ V ++EI + D
Sbjct: 11 VRKVGGRFKLSTLIQKRMVALNRGARPLVDIQTKNPMEVVVQEILQDKIFLD 62
>gi|18977127|ref|NP_578484.1| non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase
[Pyrococcus furiosus DSM 3638]
gi|18892774|gb|AAL80879.1| non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase
[Pyrococcus furiosus DSM 3638]
Length = 506
Score = 34.1 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 8/68 (11%), Positives = 21/68 (30%)
Query: 49 ALREIASGTLSPDDLEEDFIHSLQKHVEIDEPDSPTENSDFSWHKPEALSFGQMSEGDLL 108
A+R I + E + L K + + + A ++ + +
Sbjct: 304 AIRLILVEEDIYEQFRESLVAQLSKIEPKNPLEDENAIMGPLIDEDSANYIEEIYKDAIE 363
Query: 109 EGINNIVT 116
+G ++
Sbjct: 364 KGARPLLE 371
>gi|11498731|ref|NP_069960.1| DNA-directed RNA polymerase, subunit K (rpoK) [Archaeoglobus
fulgidus DSM 4304]
gi|3122771|sp|O29134|RPOK_ARCFU RecName: Full=DNA-directed RNA polymerase subunit K
gi|2649464|gb|AAB90119.1| DNA-directed RNA polymerase, subunit K (rpoK) [Archaeoglobus
fulgidus DSM 4304]
Length = 75
Score = 34.1 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 16 RFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP 60
RF + R ++ GA ++ K + +AL E G +
Sbjct: 13 RFEKARIIGARALQIAMGAPVLIETDKTEPLEIALEEFNRGVIPI 57
>gi|167465481|ref|ZP_02330570.1| DNA-directed RNA polymerase omega subunit (transcriptase omega
chain) [Paenibacillus larvae subsp. larvae BRL-230010]
Length = 66
Score = 34.1 bits (77), Expect = 7.4, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTV-DVGKDKNTVVALREIASGTLSPDDLE 64
++ +DKVD+++ LV+ A+ R R L GA + D +K+ +L E+ + + ++
Sbjct: 6 IDKLLDKVDSKYSLVVAAARRARMLRDGAPSHLKDPKSNKHVGYSLEELYGDYIHYEKIQ 65
>gi|150020006|ref|YP_001305360.1| DNA-directed RNA polymerase, omega subunit [Thermosipho
melanesiensis BI429]
gi|259494513|sp|A6LJ74|RPOZ_THEM4 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|149792527|gb|ABR29975.1| DNA-directed RNA polymerase, omega subunit [Thermosipho
melanesiensis BI429]
Length = 75
Score = 33.7 bits (76), Expect = 7.8, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 26/53 (49%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDD 62
+ K+ +F + + + R +L + A V+ + +AL+E++ G + +
Sbjct: 11 LKKIPYKFAIPIAVAKRAENLKEFAHSYVETWDNNYVSIALKELSEGYIRIKN 63
>gi|15668369|ref|NP_247165.1| DNA-directed RNA polymerase subunit K [Methanocaldococcus
jannaschii DSM 2661]
gi|2500632|sp|Q57650|RPOK_METJA RecName: Full=DNA-directed RNA polymerase subunit K
gi|1498971|gb|AAB98177.1| DNA-directed RNA polymerase, subunit K (rpoK) [Methanocaldococcus
jannaschii DSM 2661]
Length = 57
Score = 33.7 bits (76), Expect = 7.8, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 16 RFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLE 64
+F + + R+ +S GA T++ D + +A EI G + +
Sbjct: 5 KFEIARILGARSLQISSGAYATIETKCDSSLKIAYEEIKQGKVPLKPIR 53
>gi|229031500|ref|ZP_04187500.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus
AH1271]
gi|229174536|ref|ZP_04302068.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus MM3]
gi|228609096|gb|EEK66386.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus MM3]
gi|228729789|gb|EEL80769.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus
AH1271]
Length = 70
Score = 33.7 bits (76), Expect = 7.9, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVD-VGKDKNTVVALREIASGTLSP 60
++ + K+D+++ LV +A+ R R + ++ K +L EI + L
Sbjct: 6 IDSLLTKIDSKYTLVTVAAKRAREMQLADNCVIEQPVSHKCVGKSLEEIDAEVLKY 61
>gi|148270118|ref|YP_001244578.1| DNA-directed RNA polymerase, omega subunit [Thermotoga petrophila
RKU-1]
gi|166230371|sp|A5ILC9|RPOZ_THEP1 RecName: Full=DNA-directed RNA polymerase subunit omega;
Short=RNAP omega subunit; AltName: Full=RNA polymerase
omega subunit; AltName: Full=Transcriptase subunit
omega
gi|147735662|gb|ABQ47002.1| DNA-directed RNA polymerase, omega subunit [Thermotoga petrophila
RKU-1]
Length = 79
Score = 33.7 bits (76), Expect = 7.9, Method: Composition-based stats.
Identities = 9/63 (14%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSP--DDLEEDF 67
+ K+ ++ + ++ + R + + AKP V + +A E++ + +++ +
Sbjct: 15 LKKIPYKYAIPVVVAKRAEAIREYAKPFVITDDENPVSIAFMELSLNYIRIKNEEILKAL 74
Query: 68 IHS 70
I
Sbjct: 75 IPK 77
>gi|160914579|ref|ZP_02076794.1| hypothetical protein EUBDOL_00587 [Eubacterium dolichum DSM 3991]
gi|158433737|gb|EDP12026.1| hypothetical protein EUBDOL_00587 [Eubacterium dolichum DSM 3991]
Length = 1395
Score = 33.7 bits (76), Expect = 8.0, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 32 QGAKPTVDVGKDKNT-VVALREIASGT-LSPDDLEEDFIHSLQKHVEIDEPDSPTENSDF 89
G + VD+ KD +T AL I T ++ ++L + + E E E+ DF
Sbjct: 1326 NGEE--VDINKDDSTETTALPPILDTTAVAEEELSDVVVE------EPTEIVEDEESEDF 1377
Query: 90 SWHKPEALSFGQMSEGD 106
EA++ M+E +
Sbjct: 1378 DSFDEEAIALDDMNEEE 1394
>gi|47569497|ref|ZP_00240177.1| DNA-directed RNA polymerase, omega subunit [Bacillus cereus
G9241]
gi|228987013|ref|ZP_04147139.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229157446|ref|ZP_04285524.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus ATCC
4342]
gi|47553826|gb|EAL12197.1| DNA-directed RNA polymerase, omega subunit [Bacillus cereus
G9241]
gi|228626173|gb|EEK82922.1| DNA-directed RNA polymerase subunit omega [Bacillus cereus ATCC
4342]
gi|228772791|gb|EEM21231.1| DNA-directed RNA polymerase subunit omega [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 70
Score = 33.7 bits (76), Expect = 8.0, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 6 VEDCIDKVDNRFLLVLLASHRTRHLSQGAKPTVDVG-KDKNTVVALREIASGTLSP 60
++ + K+D+++ LV +A+ R R + V+ K AL EI LS
Sbjct: 6 IDSLLTKIDSKYTLVTVAAKRAREMQLANNCVVEKPVSHKCVGKALEEIDIEALSY 61
>gi|257053580|ref|YP_003131413.1| RNA polymerase Rpb6 [Halorhabdus utahensis DSM 12940]
gi|256692343|gb|ACV12680.1| RNA polymerase Rpb6 [Halorhabdus utahensis DSM 12940]
Length = 58
Score = 33.7 bits (76), Expect = 8.1, Method: Composition-based stats.
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 15 NRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASG 56
NR+ + R ++ GA +D + + ++A E +G
Sbjct: 7 NRYEKARILGARALQVAYGAPVLIDTDQTQPILIAAEEYDAG 48
>gi|224085790|ref|XP_002307697.1| predicted protein [Populus trichocarpa]
gi|222857146|gb|EEE94693.1| predicted protein [Populus trichocarpa]
Length = 768
Score = 33.7 bits (76), Expect = 8.2, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 10/84 (11%)
Query: 28 RHLSQGAKPTVDVGKDKNTVVALREI-ASGTLSPDDLEEDFIHSLQKHVEIDEPDSPTE- 85
R G P A+ I A T D ++ I +LQK + D E
Sbjct: 498 RQEGGGRSPLAAAA-------AIVRIGAEATAVIDHVKASAIQALQKVFPLGHKDMGAEF 550
Query: 86 -NSDFSWHKPEALSFGQMSEGDLL 108
+D PE + ++ E +L+
Sbjct: 551 HENDGINSNPEEIYSDEVPEEELI 574
>gi|205373317|ref|ZP_03226121.1| hypothetical protein Bcoam_08325 [Bacillus coahuilensis m4-4]
Length = 72
Score = 33.7 bits (76), Expect = 8.2, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 10 IDKVDNRFLLVLLASHRTRHLSQ-GAKPTVDV-GKDKNTVVALREIASGTLSP---DDLE 64
++K+D+++ LV +A+ R R + + K T+D K AL EI + TL+ +D+E
Sbjct: 10 LNKIDSKYSLVSVAAKRARSMQETNDKGTLDRFVSHKYVGKALEEINADTLTIGNKEDVE 69
Query: 65 ED 66
E
Sbjct: 70 EQ 71
>gi|167760589|ref|ZP_02432716.1| hypothetical protein CLOSCI_02963 [Clostridium scindens ATCC 35704]
gi|167661810|gb|EDS05940.1| hypothetical protein CLOSCI_02963 [Clostridium scindens ATCC 35704]
Length = 355
Score = 33.7 bits (76), Expect = 8.6, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 34 AKPTVDV-GKDKNT----VVALR-EIASGTLSPDDLEEDFIHSLQKHVEIDEPDSPTENS 87
A+P+VD KDK V +L+ ++ LE D I Q+ + +E + +
Sbjct: 24 AEPSVDDLKKDKEAAQSEVDSLQSKLTDLLSKISQLEGDLISKGQEITQAEEDLAAAQEK 83
Query: 88 DFSWHKPEALSFGQMSEGDLLEGINNIVTPDKRDD 122
+ ++ L M E + +V+ D
Sbjct: 84 EEEQYEAMKLRIKFMYEEGDTSVLETLVSAKDFSD 118
>gi|330444630|ref|YP_004377616.1| s/t protein kinase [Chlamydophila pecorum E58]
gi|328807740|gb|AEB41913.1| s/t protein kinase [Chlamydophila pecorum E58]
Length = 617
Score = 33.7 bits (76), Expect = 9.0, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 15/110 (13%)
Query: 19 LVLLASHRTRHL-------SQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEEDFIHSL 71
L + +R R L S G + + T A+REIA + E
Sbjct: 251 LTSSSENRARILTPLLKKKSSGEQMLSAISN--CTQEAVREIAEKPAVASGVCEALKKEA 308
Query: 72 QKHVEIDEPDS------PTENSDFSWHKPEALSFGQMSEGDLLEGINNIV 115
+KHV + ++ + D + S G+ +E + +++
Sbjct: 309 EKHVSQESSEALEFVLVEARSIDEAMDTATDFSSGEKNEDGYSHALQSLL 358
>gi|84489663|ref|YP_447895.1| RpoK [Methanosphaera stadtmanae DSM 3091]
gi|84372982|gb|ABC57252.1| RpoK [Methanosphaera stadtmanae DSM 3091]
Length = 63
Score = 33.7 bits (76), Expect = 9.0, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 14 DNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTV-VALREIASGTLSPDDLEED 66
+ RF L R +S GA P V+ D++ + +A++E G + D + +D
Sbjct: 6 NTRFERARLIGSRALQISMGANPLVEFTPDQDPIKIAIKEYEEGVIPLDAVVKD 59
>gi|312137114|ref|YP_004004451.1| DNA-directed RNA polymerase, subunit k [Methanothermus fervidus
DSM 2088]
gi|311224833|gb|ADP77689.1| DNA-directed RNA polymerase, subunit K [Methanothermus fervidus
DSM 2088]
Length = 58
Score = 33.7 bits (76), Expect = 9.2, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 19/51 (37%)
Query: 16 RFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEED 66
RF L R L+ GAKP V K +A+ E+ + +
Sbjct: 7 RFEKDRLLGSRALQLAMGAKPLVKTDKINPVDIAILELKKDVIPLKVVRNS 57
>gi|167760588|ref|ZP_02432715.1| hypothetical protein CLOSCI_02962 [Clostridium scindens ATCC 35704]
gi|167661809|gb|EDS05939.1| hypothetical protein CLOSCI_02962 [Clostridium scindens ATCC 35704]
Length = 360
Score = 33.7 bits (76), Expect = 9.2, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 6/95 (6%)
Query: 34 AKPTVDVGKDKNT-----VVALR-EIASGTLSPDDLEEDFIHSLQKHVEIDEPDSPTENS 87
A P+VD KD V +L+ ++ DLEE I ++ + +E +
Sbjct: 27 AAPSVDDLKDNKAAKESEVSSLQDQLTDIMSKLGDLEESLIEKGEEITKAEEDLKEAQEK 86
Query: 88 DFSWHKPEALSFGQMSEGDLLEGINNIVTPDKRDD 122
+ ++ M E + +VT + D
Sbjct: 87 EQEQYEAMKKRIKFMYEEGDTTALETLVTAENFSD 121
>gi|313126012|ref|YP_004036282.1| DNA-directed RNA polymerase, subunit k [Halogeometricum
borinquense DSM 11551]
gi|312292377|gb|ADQ66837.1| DNA-directed RNA polymerase, subunit K [Halogeometricum
borinquense DSM 11551]
Length = 58
Score = 33.7 bits (76), Expect = 9.7, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 15 NRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEE 65
NR+ + R +S GA +D + + ++A E +G L E
Sbjct: 6 NRYEKARILGARALQVSYGAPVLLDTDQSEPILIAAEEYDAGVLPFTVQRE 56
>gi|320103415|ref|YP_004179006.1| DNA-directed RNA polymerase subunit omega [Isosphaera pallida
ATCC 43644]
gi|319750697|gb|ADV62457.1| DNA-directed RNA polymerase, omega subunit [Isosphaera pallida
ATCC 43644]
Length = 201
Score = 33.7 bits (76), Expect = 9.7, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 7 EDCI-DKVDNRFLLVLLASHRTRHLSQGAKPTVDVGKDKNTVVALREIASGTLSPDDLEE 65
ED I +KV +F L L R L+QGA+P VD+ + + ++EI + D
Sbjct: 7 EDAIANKVGGKFKLATLIQKRMIALNQGARPLVDLRTNNKMEIVIQEILQDKIYLD---- 62
Query: 66 DFIHSLQKHVEIDEPDSPTENSDFS 90
+ E EP S
Sbjct: 63 -LSERVSTVTEDPEPLHHETIDLTS 86
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.309 0.154 0.445
Lambda K H
0.267 0.0475 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,285,577,680
Number of Sequences: 14124377
Number of extensions: 56971543
Number of successful extensions: 651091
Number of sequences better than 10.0: 9386
Number of HSP's better than 10.0 without gapping: 6997
Number of HSP's successfully gapped in prelim test: 2389
Number of HSP's that attempted gapping in prelim test: 491806
Number of HSP's gapped (non-prelim): 82681
length of query: 122
length of database: 4,842,793,630
effective HSP length: 89
effective length of query: 33
effective length of database: 3,585,724,077
effective search space: 118328894541
effective search space used: 118328894541
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.4 bits)
S2: 76 (33.7 bits)