Query gi|254780938|ref|YP_003065351.1| 4'-phosphopantetheinyl transferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 132
No_of_seqs 121 out of 1825
Neff 6.6
Searched_HMMs 39220
Date Mon May 30 01:18:38 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780938.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00070 acpS 4'-phosphopantet 100.0 0 0 286.5 11.1 125 2-131 1-126 (126)
2 COG0736 AcpS Phosphopantethein 100.0 0 0 284.2 11.0 127 1-131 1-127 (127)
3 TIGR00556 pantethn_trn phospho 100.0 4.3E-36 1.1E-40 226.5 -3.2 126 1-130 1-139 (139)
4 TIGR00516 acpS holo-(acyl-carr 99.9 1E-26 2.6E-31 173.1 6.1 127 1-131 2-130 (131)
5 pfam01648 ACPS 4'-phosphopante 98.8 2.7E-10 6.8E-15 79.4 -0.9 56 5-65 1-58 (58)
6 KOG0945 consensus 98.3 8E-08 2E-12 65.2 -0.9 73 4-78 127-202 (289)
7 COG2977 EntD Phosphopantethein 97.9 6.5E-06 1.7E-10 54.3 2.1 83 3-90 112-197 (228)
8 PRK10251 phosphopantetheinyltr 97.7 2.2E-05 5.5E-10 51.4 2.4 81 4-91 106-187 (207)
9 PRK10351 holo-(acyl carrier pr 97.6 4.2E-06 1.1E-10 55.4 -2.3 58 5-67 88-147 (185)
10 COG2091 Sfp Phosphopantetheiny 97.4 2.1E-05 5.3E-10 51.5 -1.0 68 5-79 105-174 (223)
11 COG2977 EntD Phosphopantethein 96.4 0.00054 1.4E-08 43.4 -0.7 58 43-127 50-107 (228)
12 COG2091 Sfp Phosphopantetheiny 95.7 0.0065 1.7E-07 37.2 2.3 95 1-126 2-100 (223)
13 PRK10251 phosphopantetheinyltr 95.7 0.0024 6E-08 39.7 -0.1 60 42-129 47-106 (207)
14 KOG0945 consensus 94.6 0.012 3E-07 35.8 0.9 80 27-122 37-119 (289)
15 TIGR01249 pro_imino_pep_1 prol 47.9 9.9 0.00025 19.1 1.5 13 80-92 23-35 (310)
16 KOG0062 consensus 43.8 13 0.00033 18.4 1.5 71 41-124 191-261 (582)
17 cd00800 INT_Lambda_C Lambda in 43.6 11 0.00029 18.7 1.2 67 28-101 1-77 (162)
18 COG2028 Uncharacterized conser 23.0 64 0.0016 14.4 2.4 46 15-80 67-112 (145)
19 COG0488 Uup ATPase components 22.4 28 0.00072 16.5 0.3 65 44-121 149-213 (530)
20 TIGR01626 ytfJ_HI0045 conserve 21.9 23 0.0006 16.9 -0.2 51 30-83 41-104 (184)
21 PRK13627 carnitine operon prot 21.2 15 0.00038 18.1 -1.3 31 25-56 139-169 (196)
No 1
>PRK00070 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=100.00 E-value=0 Score=286.46 Aligned_cols=125 Identities=46% Similarity=0.664 Sum_probs=117.0
Q ss_pred EEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-CCCCCCCCCCCEEEECCCEEEEECCCCCCCCCCCEEEEEE
Q ss_conf 679976544589999999742276898751978899984-0368742001112312112346406678987431079998
Q gi|254780938|r 2 IIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCD-LSCNRVASYAKRFAAKEAFSKAIGTGISKGVSWKDIEVCH 80 (132)
Q Consensus 2 I~GIG~Div~i~Ri~~~l~~~~~~f~~ri~t~~E~~~~~-~~~~~~~~lAgrfAaKEA~~KAlg~g~~~~~~~~dIeI~~ 80 (132)
|+|||+|||+++||++++++++++|++|+||+.|+++|. +.+++.++||||||||||++||||+|++.++.|+||||+|
T Consensus 1 I~GIG~DiV~i~Ri~~~l~~~~~~F~~rift~~E~~~~~~~~~~~~~~lA~rfAaKEA~~KAlg~g~~~~~~~~dIei~~ 80 (126)
T PRK00070 1 IVGIGTDIVEIERIEKALERHGERFAERVLTPAERAKFALSGKRPAEFLAGRFAAKEAFSKALGTGIGKGVSFRDIEVLN 80 (126)
T ss_pred CEEEEEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE
T ss_conf 98999976786999999987246889984999999988746453578999998999999998354667897314899998
Q ss_pred CCCCCEEEEECHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEEEECC
Q ss_conf 888874999975899999961467771289999871797689999987302
Q gi|254780938|r 81 FPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPFAQAFVVIESLL 131 (132)
Q Consensus 81 ~~~G~P~i~l~~~~~~~~~~~~~~~~~~~i~iSiSHd~~~A~A~vIlE~l~ 131 (132)
+++|+|++.++|.+++.++.. ..++|||||||++||+|+||+|++|
T Consensus 81 ~~~G~P~v~l~~~~~~~~~~~-----~~~i~lSiSH~~~yAiA~vI~E~~~ 126 (126)
T PRK00070 81 DELGKPTVRLSGEAAERLEAG-----GANIHLSISHDGDYAVAFVILESLP 126 (126)
T ss_pred CCCCCEEEEECHHHHHHHHCC-----CCEEEEEEECCCCCEEEEEEEEECC
T ss_conf 899981899988999999849-----9869999977999699999998677
No 2
>COG0736 AcpS Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism]
Probab=100.00 E-value=0 Score=284.21 Aligned_cols=127 Identities=46% Similarity=0.661 Sum_probs=122.6
Q ss_pred CEEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCCCEEEEEE
Q ss_conf 96799765445899999997422768987519788999840368742001112312112346406678987431079998
Q gi|254780938|r 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFSKAIGTGISKGVSWKDIEVCH 80 (132)
Q Consensus 1 MI~GIG~Div~i~Ri~~~l~~~~~~f~~ri~t~~E~~~~~~~~~~~~~lAgrfAaKEA~~KAlg~g~~~~~~~~dIeI~~ 80 (132)
||+|||+|||+|+||+++++++|++|.+|+||+.|+++|...+++.+|||||||||||++||||||++.++.|+||||++
T Consensus 1 mI~gIG~DiveI~Ri~~~~~r~g~~F~erilt~~E~~~~~~~~~~~~~lAgrfAaKEA~~KAlgtgi~~~~~~~diei~~ 80 (127)
T COG0736 1 MIIGIGIDIVEIERIEKALERFGERFAERILTEEELEYYEKLKSRAEFLAGRFAAKEAVSKALGTGIGKGVSFKDIEILN 80 (127)
T ss_pred CCEEEEEEEEEEHHHHHHHHHCCHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEE
T ss_conf 93178650788078999985222047788589999999985488146788887999999998655856560564489986
Q ss_pred CCCCCEEEEECHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEEEECC
Q ss_conf 888874999975899999961467771289999871797689999987302
Q gi|254780938|r 81 FPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPFAQAFVVIESLL 131 (132)
Q Consensus 81 ~~~G~P~i~l~~~~~~~~~~~~~~~~~~~i~iSiSHd~~~A~A~vIlE~l~ 131 (132)
|+.|+|.+.+++...+.+.+++. ..+|||||||++||+|+||+|+++
T Consensus 81 d~~g~P~v~~~~~~~~~~~~~~~----~~i~lSISh~~~yA~A~vi~e~~~ 127 (127)
T COG0736 81 DELGKPTVRLSGEAAKALEKLGV----ANIHLSISHDRDYAIAVVILEKLP 127 (127)
T ss_pred CCCCCCEEEECHHHHHHHHHCCC----CEEEEEEECCCCEEEEEEEEEECC
T ss_conf 68899579988888899985377----169999972798399999997369
No 3
>TIGR00556 pantethn_trn phosphopantethiene--protein transferase domain; InterPro: IPR004568 This domain is active in transferring the phophopantethiene prosthetic group to its attachment site on enzymes and carrier proteins. Many members of the family containing this domain are small proteins that act on the acyl carrier protein involved in fatty acid biosynthesis. Some members are domains of larger proteins involved specialised pathways for the synthesis of unusual molecules including polyketides, atypical fatty acids, and antibiotics.; GO: 0000287 magnesium ion binding, 0008897 phosphopantetheinyltransferase activity, 0006633 fatty acid biosynthetic process.
Probab=100.00 E-value=4.3e-36 Score=226.53 Aligned_cols=126 Identities=40% Similarity=0.568 Sum_probs=114.1
Q ss_pred CEEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHH---HHHCCCCC-CCCCCCEEEECCCEEEEECCCCCC------C
Q ss_conf 9679976544589999999742276898751978899---98403687-420011123121123464066789------8
Q gi|254780938|r 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQD---VCDLSCNR-VASYAKRFAAKEAFSKAIGTGISK------G 70 (132)
Q Consensus 1 MI~GIG~Div~i~Ri~~~l~~~~~~f~~ri~t~~E~~---~~~~~~~~-~~~lAgrfAaKEA~~KAlg~g~~~------~ 70 (132)
|+.|||||||+|+||...+++.|++|.+|+||+.|++ |+...+++ ..|||||||+|||++||+|+|++. +
T Consensus 1 ~~~~iGiDiv~i~~i~~~~~~~~~~~~eR~ft~~E~~~D~~~~~~~~~~~~~lAg~waaKEA~~Ka~g~~~~~~~~~~~~ 80 (139)
T TIGR00556 1 DIVGIGIDIVEIKRIAEQVERSGDTFAERFFTPSEIENDDYCKLKPKSRTESLAGRWAAKEAFIKALGKGISGKLPSFEE 80 (139)
T ss_pred CCCCCCEEEEEECCHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 99872014776262578741889633100079767540146540642026788999989999999851001568752356
Q ss_pred CCCC--EEEEEECCCCCEEEEECHHHH-HHHHHHCCCCCCEEEEEEEECCCCEEEEEEEEEEC
Q ss_conf 7431--079998888874999975899-99996146777128999987179768999998730
Q gi|254780938|r 71 VSWK--DIEVCHFPGGKPYISISGRAS-DVLSSLVPKGYKPVVHLTISDDFPFAQAFVVIESL 130 (132)
Q Consensus 71 ~~~~--dIeI~~~~~G~P~i~l~~~~~-~~~~~~~~~~~~~~i~iSiSHd~~~A~A~vIlE~l 130 (132)
..++ ||||.++..|+|.+.|++... +.++.++.. .+|+|||||.+|++|+|++|+.
T Consensus 81 ~~~~l~Diev~~~~~g~~~~~l~~~~~ak~~~~~~~~----~~~~sisH~~~~a~a~~~~~~~ 139 (139)
T TIGR00556 81 LLFTLKDIEVVKDLKGAPRVCLIGEAAAKLAEKLGVL----SVHVSISHDKEYATAQVILESK 139 (139)
T ss_pred HHHHHHCCEEEECCCCCCCEEEECCHHCCHHHHHHHH----EECCEECCHHHHHHHHHHHHCC
T ss_conf 5642222245423878811256201110278767553----0010001425788888876329
No 4
>TIGR00516 acpS holo-(acyl-carrier-protein) synthase; InterPro: IPR002582 Holo-acyl carrier protein synthase (ACPS) transfers the 4'-phosphopantetheine (4'-PP) moiety from coenzyme A (CoA) to Ser-36 of acyl carrier protein (ACP) in Escherichia coli. This post-translational modification renders holo-ACP capable of acyl group activation via thioesterification of the cysteamine thiol of 4'-PP .; GO: 0000287 magnesium ion binding, 0008897 phosphopantetheinyltransferase activity, 0006633 fatty acid biosynthetic process.
Probab=99.93 E-value=1e-26 Score=173.08 Aligned_cols=127 Identities=41% Similarity=0.563 Sum_probs=120.0
Q ss_pred CEEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCC--CCCCCEEEECCCEEEEECCCCCCCCCCCEEEE
Q ss_conf 9679976544589999999742276898751978899984036874--20011123121123464066789874310799
Q gi|254780938|r 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRV--ASYAKRFAAKEAFSKAIGTGISKGVSWKDIEV 78 (132)
Q Consensus 1 MI~GIG~Div~i~Ri~~~l~~~~~~f~~ri~t~~E~~~~~~~~~~~--~~lAgrfAaKEA~~KAlg~g~~~~~~~~dIeI 78 (132)
||+|+|+|++++.|++..+.+.+++|.+|++++.|+..|.....+. +++|||||+|||+.||+|+|+++.+.|.|+++
T Consensus 2 ~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~f~~~~f~~ke~~~k~~~~g~~~~l~f~~~~~ 81 (131)
T TIGR00516 2 AILGLGLDIVELARIEACVGRFGDRFAERVLSPSELDLWKDLSEPSKNEFLAGRFALKEACSKAFGTGIGKGLSFLDIEI 81 (131)
T ss_pred CEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEE
T ss_conf 00101320577888999986534677876317125666543112012345566677777776765202123210011000
Q ss_pred EECCCCCEEEEECHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEEEECC
Q ss_conf 98888874999975899999961467771289999871797689999987302
Q gi|254780938|r 79 CHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPFAQAFVVIESLL 131 (132)
Q Consensus 79 ~~~~~G~P~i~l~~~~~~~~~~~~~~~~~~~i~iSiSHd~~~A~A~vIlE~l~ 131 (132)
.++++|+|.+.+.|.+...++.++.. .+|+|++|+..|+.|.|++|++-
T Consensus 82 ~~~~~g~p~~~l~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 130 (131)
T TIGR00516 82 FKDPLGKPLLTLWGEALELCDKLGVA----SLHVSLSHDKGYACATVVIESLN 130 (131)
T ss_pred CCCCCCCCEEEECHHHHHHHHHHCHH----HEEEEECCCCCCEEEEEEEECCC
T ss_conf 12556773133202577887651210----10133102333001012230147
No 5
>pfam01648 ACPS 4'-phosphopantetheinyl transferase superfamily. Members of this family transfers the 4'-phosphopantetheine (4'-PP) moiety from coenzyme A (CoA) to the invariant serine of pfam00550. This post-translational modification renders holo-ACP capable of acyl group activation via thioesterification of the cysteamine thiol of 4'-PP. This superfamily consists of two subtypes: The ACPS type and the Sfp type. The structure of the Sfp type is known, which shows the active site accommodates a magnesium ion. The most highly conserved regions of the alignment are involved in binding the magnesium ion.
Probab=98.85 E-value=2.7e-10 Score=79.37 Aligned_cols=56 Identities=32% Similarity=0.427 Sum_probs=47.7
Q ss_pred EEEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC--CCCCCCEEEECCCEEEEECC
Q ss_conf 97654458999999974227689875197889998403687--42001112312112346406
Q gi|254780938|r 5 IGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNR--VASYAKRFAAKEAFSKAIGT 65 (132)
Q Consensus 5 IG~Div~i~Ri~~~l~~~~~~f~~ri~t~~E~~~~~~~~~~--~~~lAgrfAaKEA~~KAlg~ 65 (132)
||+||..+.|. ....++.+++||+.|+.++...+.. ..+|+..|++|||++||+|.
T Consensus 1 vGiDiE~~~~~-----~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~ 58 (58)
T pfam01648 1 VGIDIEKIRRI-----RDGEKLAERIFTPEELALLAALPEPDQARAFARLWTAKEAVLKALGL 58 (58)
T ss_pred CEEEEEECCCC-----CCHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 93861451787-----89999999978999999998599057999999999999999987369
No 6
>KOG0945 consensus
Probab=98.29 E-value=8e-08 Score=65.25 Aligned_cols=73 Identities=22% Similarity=0.263 Sum_probs=53.5
Q ss_pred EEEEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCC---CCCCCEEEECCCEEEEECCCCCCCCCCCEEEE
Q ss_conf 9976544589999999742276898751978899984036874---20011123121123464066789874310799
Q gi|254780938|r 4 GIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRV---ASYAKRFAAKEAFSKAIGTGISKGVSWKDIEV 78 (132)
Q Consensus 4 GIG~Div~i~Ri~~~l~~~~~~f~~ri~t~~E~~~~~~~~~~~---~~lAgrfAaKEA~~KAlg~g~~~~~~~~dIeI 78 (132)
-||+||.+..+-+ ....+ -.+.+|+||++|++...+.+++. .-|---|+.|||+.||+|+|+...++-.|..+
T Consensus 127 ~VGIDIm~~~~r~-~~~e~-l~~~kr~fS~~E~k~l~s~~~e~~~~~~FyrlWtLKEa~lKAtGvGl~~~L~~~~F~~ 202 (289)
T KOG0945 127 PVGIDIMRPKERK-TAHEE-LELFKRVFSEDEWKMLKSAPDEEVQRTMFYRLWTLKEAILKATGVGLNTDLSLLDFSA 202 (289)
T ss_pred CCCEEEEECCCCC-CHHHH-HHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 4433445136665-45899-9999986299999998718970567889999999999999986478666533140146
No 7
>COG2977 EntD Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.87 E-value=6.5e-06 Score=54.34 Aligned_cols=83 Identities=17% Similarity=0.163 Sum_probs=60.9
Q ss_pred EEEEEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCC-CCCEEEECCCEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf 7997654458999999974227689875197889998403687420-011123121123464066789874310799988
Q gi|254780938|r 3 IGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVAS-YAKRFAAKEAFSKAIGTGISKGVSWKDIEVCHF 81 (132)
Q Consensus 3 ~GIG~Div~i~Ri~~~l~~~~~~f~~ri~t~~E~~~~~~~~~~~~~-lAgrfAaKEA~~KAlg~g~~~~~~~~dIeI~~~ 81 (132)
.|||+||....-.. .+.....-|.|+.|+........+... +.=-||||||++||+-+-.++-++|.|.++.-+
T Consensus 112 ~~iGIDiE~~~~~~-----~a~ei~~~I~t~~E~~~l~~~~~~~~~~~tLlFsAKESlfKA~yP~~~r~~gFedA~i~~~ 186 (228)
T COG2977 112 RSIGIDIEPHESLP-----TAREIADIIITPAERARLARAGLAFLLALTLLFSAKESLFKALYPLVKRWLGFEDAQISSD 186 (228)
T ss_pred CCCEEECCCCCCCC-----CHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEC
T ss_conf 54305043033574-----2567887738998999876302001124442211358888764120312137013045431
Q ss_pred --CCCCEEEEE
Q ss_conf --888749999
Q gi|254780938|r 82 --PGGKPYISI 90 (132)
Q Consensus 82 --~~G~P~i~l 90 (132)
..|.-.+.+
T Consensus 187 ~~~~~~~~l~l 197 (228)
T COG2977 187 TDRQGSFGLRL 197 (228)
T ss_pred CCCCCEEEEEE
T ss_conf 57664025898
No 8
>PRK10251 phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex; Provisional
Probab=97.69 E-value=2.2e-05 Score=51.37 Aligned_cols=81 Identities=19% Similarity=0.165 Sum_probs=58.0
Q ss_pred EEEEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCC-CCCCCEEEECCCEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf 9976544589999999742276898751978899984036874-200111231211234640667898743107999888
Q gi|254780938|r 4 GIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRV-ASYAKRFAAKEAFSKAIGTGISKGVSWKDIEVCHFP 82 (132)
Q Consensus 4 GIG~Div~i~Ri~~~l~~~~~~f~~ri~t~~E~~~~~~~~~~~-~~lAgrfAaKEA~~KAlg~g~~~~~~~~dIeI~~~~ 82 (132)
++|+||..+-- ....+....-|+|+.|++.....+.+. ..+.=.|+|||+++|||-+ +..++|.|.+|+.-.
T Consensus 106 ~lGIDiE~~l~-----~~~A~eL~~~Ilt~~E~~~L~~~~l~f~~~lTL~FSAKESLFKALyv--~~~f~F~dA~i~~~~ 178 (207)
T PRK10251 106 PIGIDIEEIFS-----QQTATELTDNIITPAEHERLADCGLPFPLALTLAFSAKESAFKAFEI--QTLPGFLDYQIISWN 178 (207)
T ss_pred CCCCCHHHHCC-----HHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCCCCCEEEEEEEC
T ss_conf 56515677469-----99999999872999999998639984665667555278989987365--535785535899604
Q ss_pred CCCEEEEEC
Q ss_conf 887499997
Q gi|254780938|r 83 GGKPYISIS 91 (132)
Q Consensus 83 ~G~P~i~l~ 91 (132)
..+-.+.+.
T Consensus 179 ~~~l~l~l~ 187 (207)
T PRK10251 179 KQQIIIHLE 187 (207)
T ss_pred CCEEEEECC
T ss_conf 133888716
No 9
>PRK10351 holo-(acyl carrier protein) synthase 2; Provisional
Probab=97.60 E-value=4.2e-06 Score=55.42 Aligned_cols=58 Identities=24% Similarity=0.256 Sum_probs=42.8
Q ss_pred EEEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCC--CCCCCCCEEEECCCEEEEECCCC
Q ss_conf 9765445899999997422768987519788999840368--74200111231211234640667
Q gi|254780938|r 5 IGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCN--RVASYAKRFAAKEAFSKAIGTGI 67 (132)
Q Consensus 5 IG~Div~i~Ri~~~l~~~~~~f~~ri~t~~E~~~~~~~~~--~~~~lAgrfAaKEA~~KAlg~g~ 67 (132)
||+||..+.. ..+ =+.+.+|+|++.|.+....-+. +...|---|+.|||++||-|-|.
T Consensus 88 VGVDIE~iRp---~~d--~~~LA~rfFS~~E~~~L~aLP~~~Q~~aFfr~WTrKEAyLKAtGg~~ 147 (185)
T PRK10351 88 VGCDIEVIRP---RAN--WRWLANAVFSLGEHAEMDAVHPDQQLEMFWRIWTRKEAIVKQRGGSA 147 (185)
T ss_pred CCCCHHHHCC---CCC--HHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 4422789466---668--99999986799999999849998999999999999999997406771
No 10
>COG2091 Sfp Phosphopantetheinyl transferase [Coenzyme metabolism]
Probab=97.39 E-value=2.1e-05 Score=51.48 Aligned_cols=68 Identities=25% Similarity=0.379 Sum_probs=46.2
Q ss_pred EEEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCC--CCCCCCCCEEEECCCEEEEECCCCCCCCCCCEEEEE
Q ss_conf 976544589999999742276898751978899984036--874200111231211234640667898743107999
Q gi|254780938|r 5 IGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSC--NRVASYAKRFAAKEAFSKAIGTGISKGVSWKDIEVC 79 (132)
Q Consensus 5 IG~Div~i~Ri~~~l~~~~~~f~~ri~t~~E~~~~~~~~--~~~~~lAgrfAaKEA~~KAlg~g~~~~~~~~dIeI~ 79 (132)
||+||..+.-- .....+.+++|++.|........ ++...|.--|..|||+.||.|.|+..+ +.++.+.
T Consensus 105 iGVDIE~~~p~-----~~~~~la~~ff~~~e~~e~~~~~~~~~~~~F~~lWt~KEA~lKa~G~Gl~~~--L~~~~~~ 174 (223)
T COG2091 105 IGVDIEKIRPR-----AGWRSLAARFFHPFEPNELAWLDKDQDNEAFYRLWTLKEAVLKATGKGLADG--LSSVDLT 174 (223)
T ss_pred EEEEEEEECCC-----CCCHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--CCCEEEC
T ss_conf 56667884277-----7502268886484648888615907788999999999999998607724457--1031661
No 11
>COG2977 EntD Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.37 E-value=0.00054 Score=43.40 Aligned_cols=58 Identities=22% Similarity=0.146 Sum_probs=41.8
Q ss_pred CCCCCCCCCEEEECCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHCCCCCCEEEEEEEECCCCEEE
Q ss_conf 68742001112312112346406678987431079998888874999975899999961467771289999871797689
Q gi|254780938|r 43 CNRVASYAKRFAAKEAFSKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPFAQ 122 (132)
Q Consensus 43 ~~~~~~lAgrfAaKEA~~KAlg~g~~~~~~~~dIeI~~~~~G~P~i~l~~~~~~~~~~~~~~~~~~~i~iSiSHd~~~A~ 122 (132)
+.+.+|+||||+|.+|.- .+| -.+.-+.+.+.|.|.- -..+.=||||++++|+
T Consensus 50 KRkaEflAgR~cA~~AL~-~lg--------~~~~Pi~~G~~raPlW------------------P~gvvGSIsH~~~~A~ 102 (228)
T COG2977 50 KRKAEFLAGRICARQALR-ELG--------VADVPILRGEDRAPLW------------------PAGVVGSISHCDGTAL 102 (228)
T ss_pred HHHHHHHHHHHHHHHHHH-HHC--------CCCCCCCCCCCCCCCC------------------CCCCEEEEECCCCEEE
T ss_conf 888888889999999999-838--------8787754488899879------------------8755476540687336
Q ss_pred EEEEE
Q ss_conf 99998
Q gi|254780938|r 123 AFVVI 127 (132)
Q Consensus 123 A~vIl 127 (132)
|+|--
T Consensus 103 Avv~~ 107 (228)
T COG2977 103 AVVAR 107 (228)
T ss_pred EEEEC
T ss_conf 76632
No 12
>COG2091 Sfp Phosphopantetheinyl transferase [Coenzyme metabolism]
Probab=95.73 E-value=0.0065 Score=37.23 Aligned_cols=95 Identities=18% Similarity=0.125 Sum_probs=57.5
Q ss_pred CEEEEEEEEEEH-HHHHHHHHHHHHHHHHHHCCHHHHHHHH---CCCCCCCCCCCEEEECCCEEEEECCCCCCCCCCCEE
Q ss_conf 967997654458-9999999742276898751978899984---036874200111231211234640667898743107
Q gi|254780938|r 1 MIIGIGSDIVSI-QRISRLLQSFNRKFESRCFSSLEQDVCD---LSCNRVASYAKRFAAKEAFSKAIGTGISKGVSWKDI 76 (132)
Q Consensus 1 MI~GIG~Div~i-~Ri~~~l~~~~~~f~~ri~t~~E~~~~~---~~~~~~~~lAgrfAaKEA~~KAlg~g~~~~~~~~dI 76 (132)
|+.++=+|+.+. +. .++++..... .|+..+. .+.++..++|++++.--=+..+++ ....++
T Consensus 2 ~~~~~v~~~~~~~~~--------~~~~l~~~~~-~E~~r~~r~~~~~dr~r~l~~~~~lr~lls~~l~------~~~~~~ 66 (223)
T COG2091 2 MATVFVVGIQSDRPL--------IERRLPSLLS-EEARRGPRYRNKRDRERFLASRLLLRALLSIALG------LDPELL 66 (223)
T ss_pred CCEEEEEECCCCCHH--------HHHHHCCCCH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC------CCCCCC
T ss_conf 755999832473113--------4666411056-7886411211426788888788999999999717------885554
Q ss_pred EEEECCCCCEEEEECHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEE
Q ss_conf 99988888749999758999999614677712899998717976899999
Q gi|254780938|r 77 EVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPFAQAFVV 126 (132)
Q Consensus 77 eI~~~~~G~P~i~l~~~~~~~~~~~~~~~~~~~i~iSiSHd~~~A~A~vI 126 (132)
++..++.|||++.-. ..++.||||.++|+.-.+-
T Consensus 67 ~~~~~~~GKP~~~~~----------------~~~~FniSHSg~~v~v~l~ 100 (223)
T COG2091 67 QISYGERGKPYLPDE----------------NLLDFNISHSGDYVAVALS 100 (223)
T ss_pred EEEECCCCCCCCCCC----------------CCCCEEEEEECCEEEEEEE
T ss_conf 366779988531478----------------8873788631784999983
No 13
>PRK10251 phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex; Provisional
Probab=95.67 E-value=0.0024 Score=39.74 Aligned_cols=60 Identities=27% Similarity=0.151 Sum_probs=40.4
Q ss_pred CCCCCCCCCCEEEECCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHCCCCCCEEEEEEEECCCCEE
Q ss_conf 36874200111231211234640667898743107999888887499997589999996146777128999987179768
Q gi|254780938|r 42 SCNRVASYAKRFAAKEAFSKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPFA 121 (132)
Q Consensus 42 ~~~~~~~lAgrfAaKEA~~KAlg~g~~~~~~~~dIeI~~~~~G~P~i~l~~~~~~~~~~~~~~~~~~~i~iSiSHd~~~A 121 (132)
.+++.+|+|||+||++|. +.+|.. .+. .+ .+.+.|.- +.+ +.=||||++++|
T Consensus 47 ~KRraEflAGR~~Ar~AL-~~lG~~---~~p-----~i-G~~RaP~W--------------P~g----~~GSIsH~~~~A 98 (207)
T PRK10251 47 RKRKAEHLAGRIAAVYAL-REYGYK---CVP-----AI-GELRQPVW--------------PAG----VYGSISHCGTTA 98 (207)
T ss_pred HHHHHHHHHHHHHHHHHH-HHCCCC---CCC-----CC-CCCCCCCC--------------CCC----CEEEEECCCCEE
T ss_conf 899999999999999999-971998---887-----86-99999889--------------998----748665057848
Q ss_pred EEEEEEEE
Q ss_conf 99999873
Q gi|254780938|r 122 QAFVVIES 129 (132)
Q Consensus 122 ~A~vIlE~ 129 (132)
+|+|--+.
T Consensus 99 ~avva~~~ 106 (207)
T PRK10251 99 LAVVSRQP 106 (207)
T ss_pred EEEEECCC
T ss_conf 99995045
No 14
>KOG0945 consensus
Probab=94.62 E-value=0.012 Score=35.78 Aligned_cols=80 Identities=16% Similarity=0.320 Sum_probs=53.6
Q ss_pred HHHHCCHHHHHHH---HCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHCC
Q ss_conf 9875197889998---4036874200111231211234640667898743107999888887499997589999996146
Q gi|254780938|r 27 ESRCFSSLEQDVC---DLSCNRVASYAKRFAAKEAFSKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVP 103 (132)
Q Consensus 27 ~~ri~t~~E~~~~---~~~~~~~~~lAgrfAaKEA~~KAlg~g~~~~~~~~dIeI~~~~~G~P~i~l~~~~~~~~~~~~~ 103 (132)
.-|.++++|.+.- ....+....|+||-=..-++.+.+| +.|+++...++..|||.+ .++..
T Consensus 37 a~~~ls~se~erI~qfr~~~DakaaL~grLl~R~~~a~~~~------~~~n~l~f~rt~~GKP~l---------~qn~~- 100 (289)
T KOG0945 37 AVQSLSPSEKERILQFRFDEDAKAALAGRLLVRHLVAIYLG------VPWNELRFSRTEYGKPVL---------WQNYS- 100 (289)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHEEEECCCCCCCCH---------HHCCC-
T ss_conf 98748998999999875447889889999999988899837------981672752246799522---------10245-
Q ss_pred CCCCEEEEEEEECCCCEEE
Q ss_conf 7771289999871797689
Q gi|254780938|r 104 KGYKPVVHLTISDDFPFAQ 122 (132)
Q Consensus 104 ~~~~~~i~iSiSHd~~~A~ 122 (132)
+.....++.-+||.++|++
T Consensus 101 ~p~~~~f~fNvSH~gd~iv 119 (289)
T KOG0945 101 NPFSPTFGFNVSHQGDLIV 119 (289)
T ss_pred CCCCCCCCCEEEEECEEEE
T ss_conf 9999874631454120899
No 15
>TIGR01249 pro_imino_pep_1 proline iminopeptidase; InterPro: IPR005944 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of serine peptidase belong to MEROPS peptidase family S33 (clan SC). They are proline iminopeptidase (Prolyl aminopeptidase, 3.4.11.5 from EC), which catalyzes the removal of the N-terminal proline from peptides. This family represents one of two related families of proline iminopeptidase containing the alpha/beta fold. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members. ; GO: 0016804 prolyl aminopeptidase activity, 0005737 cytoplasm.
Probab=47.91 E-value=9.9 Score=19.07 Aligned_cols=13 Identities=38% Similarity=0.744 Sum_probs=6.5
Q ss_pred ECCCCCEEEEECH
Q ss_conf 8888874999975
Q gi|254780938|r 80 HFPGGKPYISISG 92 (132)
Q Consensus 80 ~~~~G~P~i~l~~ 92 (132)
=+|+|+|.|.|||
T Consensus 23 GnP~G~PV~~lHG 35 (310)
T TIGR01249 23 GNPDGKPVVFLHG 35 (310)
T ss_pred CCCCCCEEEEEEC
T ss_conf 7989954899756
No 16
>KOG0062 consensus
Probab=43.78 E-value=13 Score=18.40 Aligned_cols=71 Identities=17% Similarity=0.228 Sum_probs=48.8
Q ss_pred CCCCCCCCCCCEEEECCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHCCCCCCEEEEEEEECCCCE
Q ss_conf 03687420011123121123464066789874310799988888749999758999999614677712899998717976
Q gi|254780938|r 41 LSCNRVASYAKRFAAKEAFSKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPF 120 (132)
Q Consensus 41 ~~~~~~~~lAgrfAaKEA~~KAlg~g~~~~~~~~dIeI~~~~~G~P~i~l~~~~~~~~~~~~~~~~~~~i~iSiSHd~~~ 120 (132)
...+|...|.|=|--|=|..+|+= .=.|+-.+..|.. .|+=.+-.|+++.... +. ...|.+|||+++
T Consensus 191 mq~~pt~slSGGWrMrlaLARAlf-------~~pDlLLLDEPTN----hLDv~av~WLe~yL~t-~~-~T~liVSHDr~F 257 (582)
T KOG0062 191 MQLQPTKSLSGGWRMRLALARALF-------AKPDLLLLDEPTN----HLDVVAVAWLENYLQT-WK-ITSLIVSHDRNF 257 (582)
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHH-------CCCCEEEECCCCC----CCHHHHHHHHHHHHHH-CC-CEEEEEECCHHH
T ss_conf 983650135850426899999872-------4999886548753----1016789999999963-88-629999564777
Q ss_pred EEEE
Q ss_conf 8999
Q gi|254780938|r 121 AQAF 124 (132)
Q Consensus 121 A~A~ 124 (132)
.-.+
T Consensus 258 Ln~V 261 (582)
T KOG0062 258 LNTV 261 (582)
T ss_pred HHHH
T ss_conf 7778
No 17
>cd00800 INT_Lambda_C Lambda integrase, C-terminal catalytic domain. Lambda-type integrases catalyze site-specific integration and excision of temperate bacteriophages and other mobile genetic elements to and from the bacterial host chromosome. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The phage lambda integrase can bridge two different and well-separated DNA sequences called arm- and core-sites. The C-terminal domain binds, cleaves and re-ligates DNA strands at the core-sites, while the N-terminal domain is largely responsible for high-affinity binding to the arm-type sites.
Probab=43.64 E-value=11 Score=18.71 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=39.5
Q ss_pred HHHCCHHHHHHHHCCCCCCCCCCCEEEECCCEEEEECCCCCC----CCCCCEEE-----EEECCCCCEEE-EECHHHHHH
Q ss_conf 875197889998403687420011123121123464066789----87431079-----99888887499-997589999
Q gi|254780938|r 28 SRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFSKAIGTGISK----GVSWKDIE-----VCHFPGGKPYI-SISGRASDV 97 (132)
Q Consensus 28 ~ri~t~~E~~~~~~~~~~~~~lAgrfAaKEA~~KAlg~g~~~----~~~~~dIe-----I~~~~~G~P~i-~l~~~~~~~ 97 (132)
+|+||++|........+. +++ +-++.=|+.||.+. .+.|.||. |...++|++.. -++..+.+.
T Consensus 1 ~R~Lt~eE~~~l~~~~~~-~~~------~~~~~l~~~TGlR~~Ei~~L~w~di~~~~i~i~~~Ktg~~~~ipl~~~l~~~ 73 (162)
T cd00800 1 RRYLTDEEYRAIYEAADA-PWL------RCAMDLALLTGQRVGDVLRMKWSDIDDDGLHIEQSKTGAKLAIPLSPSLREV 73 (162)
T ss_pred CCCCCHHHHHHHHHHCCC-HHH------HHHHHHHHHHCCCHHHHHCCCHHHCCCCEEEEEECCCCCEEEEECCHHHHHH
T ss_conf 998999999999985788-668------9999999997889999971919764568799984788704676578999999
Q ss_pred HHHH
Q ss_conf 9961
Q gi|254780938|r 98 LSSL 101 (132)
Q Consensus 98 ~~~~ 101 (132)
++..
T Consensus 74 l~~~ 77 (162)
T cd00800 74 IERC 77 (162)
T ss_pred HHHH
T ss_conf 9999
No 18
>COG2028 Uncharacterized conserved protein [Function unknown]
Probab=22.99 E-value=64 Score=14.45 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCCCEEEEEE
Q ss_conf 999997422768987519788999840368742001112312112346406678987431079998
Q gi|254780938|r 15 ISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFSKAIGTGISKGVSWKDIEVCH 80 (132)
Q Consensus 15 i~~~l~~~~~~f~~ri~t~~E~~~~~~~~~~~~~lAgrfAaKEA~~KAlg~g~~~~~~~~dIeI~~ 80 (132)
..++++++|+++ +||++|+..+.....+ +|.+-.+.-.|--|+..|
T Consensus 67 ~~ei~ekygd~l---FLT~eElkkY~ks~~r-----------------Wg~r~kkkkpWmvi~L~n 112 (145)
T COG2028 67 PMEIIEKYGDRL---FLTPEELKKYMKSRKR-----------------WGSRGKKKKPWMVIELRN 112 (145)
T ss_pred HHHHHHHHCCEE---ECCHHHHHHHHHHHHH-----------------HCCCCCCCCCEEEEEEEC
T ss_conf 999999838715---4189999999987777-----------------522665578559998300
No 19
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=22.38 E-value=28 Score=16.47 Aligned_cols=65 Identities=15% Similarity=0.201 Sum_probs=44.3
Q ss_pred CCCCCCCCEEEECCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHCCCCCCEEEEEEEECCCCEE
Q ss_conf 874200111231211234640667898743107999888887499997589999996146777128999987179768
Q gi|254780938|r 44 NRVASYAKRFAAKEAFSKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPFA 121 (132)
Q Consensus 44 ~~~~~lAgrfAaKEA~~KAlg~g~~~~~~~~dIeI~~~~~G~P~i~l~~~~~~~~~~~~~~~~~~~i~iSiSHd~~~A 121 (132)
.+...|.|=|--|=|..+|| +.=.|+-++..|.. .|+-.+-+|++...... .. .-|=+|||+.+.
T Consensus 149 ~~~~~LSGG~r~Rv~LA~aL-------~~~pDlLLLDEPTN----HLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FL 213 (530)
T COG0488 149 RPVSSLSGGWRRRVALARAL-------LEEPDLLLLDEPTN----HLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFL 213 (530)
T ss_pred CCHHHCCHHHHHHHHHHHHH-------HCCCCEEEECCCCC----CCCHHHHHHHHHHHHHC-CC-CEEEEECCHHHH
T ss_conf 85443598899999999987-------34999788749886----45888999999999868-99-489996898999
No 20
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626; InterPro: IPR006513 These are sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. .
Probab=21.90 E-value=23 Score=16.94 Aligned_cols=51 Identities=18% Similarity=0.075 Sum_probs=29.8
Q ss_pred HCCHHHHHHH-------HCCCCCCCCCCCEEEECCC------EEEEECCCCCCCCCCCEEEEEECCC
Q ss_conf 5197889998-------4036874200111231211------2346406678987431079998888
Q gi|254780938|r 30 CFSSLEQDVC-------DLSCNRVASYAKRFAAKEA------FSKAIGTGISKGVSWKDIEVCHFPG 83 (132)
Q Consensus 30 i~t~~E~~~~-------~~~~~~~~~lAgrfAaKEA------~~KAlg~g~~~~~~~~dIeI~~~~~ 83 (132)
+|..+|..|- .++-+=.+++|||=||||. ++||= .| ....|+-=.|.|.+.
T Consensus 41 vL~~~~~~yq~W~SA~LaGKVRV~~hiAGRtsaKE~Na~li~aIkaa--kf-p~~~YQTTTIiN~DD 104 (184)
T TIGR01626 41 VLSDDDISYQKWRSAELAGKVRVVLHIAGRTSAKEKNASLIEAIKAA--KF-PAEKYQTTTIINADD 104 (184)
T ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHH--CC-CCCCCCCCEEEECCC
T ss_conf 75278400158741556415776565415510011376189999863--37-876775211450688
No 21
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=21.24 E-value=15 Score=18.09 Aligned_cols=31 Identities=23% Similarity=0.141 Sum_probs=22.8
Q ss_pred HHHHHHCCHHHHHHHHCCCCCCCCCCCEEEEC
Q ss_conf 68987519788999840368742001112312
Q gi|254780938|r 25 KFESRCFSSLEQDVCDLSCNRVASYAKRFAAK 56 (132)
Q Consensus 25 ~f~~ri~t~~E~~~~~~~~~~~~~lAgrfAaK 56 (132)
+++ |-+|++|+++........+.||.|+++.
T Consensus 139 k~v-R~lt~~ei~~~~~~a~~Y~~la~r~~~~ 169 (196)
T PRK13627 139 RAV-RSVSDQELHWKRLNTKEYQDLAGRCHAS 169 (196)
T ss_pred EEE-ECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 681-1499999999887699999999999854
Done!