RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780938|ref|YP_003065351.1| 4'-phosphopantetheinyl
transferase [Candidatus Liberibacter asiaticus str. psy62]
(132 letters)
>3h88_A Holo-[acyl-carrier-protein] synthase; alpha-beta structure,
structural genomics of infectious diseases, cytoplasm,
fatty acid biosynthesis; HET: COA; 1.85A {Vibrio
cholerae} (A:)
Length = 129
Score = 131 bits (332), Expect = 2e-32
Identities = 49/127 (38%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 2 IIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFSK 61
I+G+G+DI I+R+ + L F R + E + S + AKRFAAKEA SK
Sbjct: 5 IVGLGTDIAEIERVEKALARSGENFARRILTDSELEQFHASKQQGRFLAKRFAAKEAASK 64
Query: 62 AIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPFA 121
A+GTGI++GV++ D + H GKP + +SG+A+++ S L + +HL+ISD+ +A
Sbjct: 65 ALGTGIAQGVTFHDFTISHDKLGKPLLILSGQAAELASQLQVEN----IHLSISDERHYA 120
Query: 122 QAFVVIE 128
A V++E
Sbjct: 121 XATVILE 127
>3hqj_A Holo-[acyl-carrier-protein] synthase; AN/fold, structural
genomics, israel structural proteomics center, ISPC,
cytoplasm; HET: COA; 1.95A {Mycobacterium tuberculosis}
(A:)
Length = 130
Score = 130 bits (329), Expect = 5e-32
Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 13/135 (9%)
Query: 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFS 60
I+G+G D+VSI + + F +D D S + A R+AAKEA
Sbjct: 2 GIVGVGIDLVSIPDFAEQVDQPGTVFMETFTPGERRDASDKSSSAARHLAARWAAKEAVI 61
Query: 61 KAIGTGISK------GVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTI 114
KA +DIEV G+P + ++G ++ L+ +H+++
Sbjct: 62 KAWSGSRFAQRPMLPEDIHRDIEVVTDMWGRPRVRLTGAIAEYLAD-------VTIHVSL 114
Query: 115 SDDFPFAQAFVVIES 129
+ + A A ++E+
Sbjct: 115 THEGDTAAAVAILEA 129
>2qg8_A Acyl carrier protein synthase PY06285; malaria, 3'5'ADP,
SGC, structural genomics consortium, transferase; HET:
A3P; 2.00A {Plasmodium yoelii yoelii} (A:)
Length = 163
Score = 120 bits (303), Expect = 5e-29
Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 23/147 (15%)
Query: 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCN--------------RV 46
IIGIG+DI+ + RI ++L+ F + + E +
Sbjct: 4 HIIGIGTDILCVNRIYKILEKNIN-FIKKVLNPFELAEFETQKKKLNEKINKSNELKKLA 62
Query: 47 ASYAKRFAAKEAFSKAIGTGISK----GVSWKDIEVCHFPGGKPYISISGRASDVLSSLV 102
+K+FAAKEA K++G G+S G+S DIE+ + GKP++ + G+A V +
Sbjct: 63 IYVSKKFAAKEAILKSMGRGLSSISKYGLSMNDIEIKNDKYGKPHVYLYGKAKKVAYEMG 122
Query: 103 PKGYKPVVHLTISDDFPFAQAFVVIES 129
+ L+ISD+ I S
Sbjct: 123 IVK----IFLSISDEKIINSQTNNISS 145
>2was_A 3-oxoacyl-[acyl-carrier-protein] synthase; COA, FAS, PPT,
NAD, NADP, transferase, phosphoprotein, oxidoreductase,
lipid synthesis; 1.90A {Saccharomyces cerevisiae} PDB:
2wat_A* 2was_B (A:)
Length = 122
Score = 112 bits (281), Expect = 2e-26
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 9/126 (7%)
Query: 4 GIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFSKAI 63
G+G D+ I I+ N F R F+ E + C + +S+A ++AKEA K++
Sbjct: 3 GVGVDVELITSINV----ENDTFIERNFTPQEIEYCSAQPSVQSSFAGTWSAKEAVFKSL 58
Query: 64 GT-GISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPFAQ 122
G + G + KDIE+ P + + G A V ++IS D A
Sbjct: 59 GVKSLGGGAALKDIEIVRVNKNAPAVELHGNAKKAAEEAGVTD----VKVSISHDDLQAV 114
Query: 123 AFVVIE 128
A V
Sbjct: 115 AVAVST 120
>1fth_A ACPS, acyl carrier protein synthase; bacterial fatty acid
biosynthesis, acyl carrier synthase, coenzyme A, X-RAY
crystallography; HET: A3P; 1.90A {Streptococcus
pneumoniae} (A:)
Length = 122
Score = 108 bits (272), Expect = 2e-25
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCN--RVASYAKRFAAKEA 58
MI+G G DI + I + F R ++LE + ++ A R++AKEA
Sbjct: 3 MIVGHGIDIEELASIESAVTRHEG-FAKRVLTALEMERFTSLKGRRQIEYLAGRWSAKEA 61
Query: 59 FSKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDF 118
FSKA+GTGI + ++D+EV + G PY S + + + L+IS
Sbjct: 62 FSKAMGTGI-SKLGFQDLEVLNNERGAPYFSQAPFSGK-------------IWLSISHTD 107
Query: 119 PFAQAFVVIES 129
F A V++E
Sbjct: 108 QFVTASVILEE 118
>3hyk_A Holo-[acyl-carrier-protein] synthase; structural genomics,
infectious diseases, center for structural genomics of
infectious diseases; HET: MSE A3P; 2.31A {Bacillus
anthracis} (A:)
Length = 122
Score = 106 bits (265), Expect = 1e-24
Identities = 51/131 (38%), Positives = 66/131 (50%), Gaps = 17/131 (12%)
Query: 2 IIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVC--DLSCNRVASYAKRFAAKEAF 59
I+GIG DI+ + RI + L + F R + E++V A RFAAKEA+
Sbjct: 5 IVGIGIDIIELNRIEKXLDGKLK-FXERILTENERNVAKGLKGSRLTEFVAGRFAAKEAY 63
Query: 60 SKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFP 119
SKA+GTGI K VS+ DIEV + GKP + S VHL+IS
Sbjct: 64 SKAVGTGIGKEVSFLDIEVRNDDRGKPILITSTEHI--------------VHLSISHSKE 109
Query: 120 FAQAFVVIESL 130
FA A VV+ES
Sbjct: 110 FAVAQVVLESS 120
>2bdd_A ACP-synthase; structural genomics, structural genomics
consortium, SGC, transferase; 2.28A {Plasmodium yoelii
yoelii} (A:)
Length = 182
Score = 101 bits (253), Expect = 3e-23
Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 23/147 (15%)
Query: 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCN--------------RV 46
IIGIG+DI+ + RI ++L+ F + + E +
Sbjct: 23 HIIGIGTDILCVNRIYKILEKNIN-FIKKVLNPFELAEFETQKKKLNEKINKSNELKKLA 81
Query: 47 ASYAKRFAAKEAFSKAIGTGISK----GVSWKDIEVCHFPGGKPYISISGRASDVLSSLV 102
+K+FAAKEA K++G G+S G+S DIE+ + GKP++ + G+A V +
Sbjct: 82 IYVSKKFAAKEAILKSMGRGLSSISKYGLSMNDIEIKNDKYGKPHVYLYGKAKKVAYEMG 141
Query: 103 PKGYKPVVHLTISDDFPFAQAFVVIES 129
+ L+ISD+ I S
Sbjct: 142 IVK----IFLSISDEKIINSQTNNISS 164
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase,
enoyl reductase, ketoacyl synthase, ketoacyl reductase;
3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*
(A:1684-1878)
Length = 195
Score = 101 bits (252), Expect = 3e-23
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFS 60
+G D+ S+ I+ N +F SR F+ EQ C + N AS+A R+ AKEA
Sbjct: 74 PASRVGVDVESVDSINI----DNEEFISRNFTEREQAYCRRAPNPRASFAGRWTAKEAIF 129
Query: 61 KAIGTGISK-GVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFP 119
K++G G + ++IEV + G P + + G A++ K V+++IS
Sbjct: 130 KSLGVASKGAGAAMREIEVINDANGAPEVHLHGAAAEAAKQAGVKT----VNVSISHGDL 185
Query: 120 FAQAFVVIES 129
A A V +
Sbjct: 186 QAVAVAVSRT 195
>1f7l_A Holo-(acyl carrier protein) synthase; 9-strand pseudo beta
barrel protein, COA complex protein, coenzyme A complex,
transferase; HET: COA; 1.50A {Bacillus subtilis} (A:)
Length = 121
Score = 100 bits (251), Expect = 6e-23
Identities = 48/131 (36%), Positives = 65/131 (49%), Gaps = 15/131 (11%)
Query: 2 IIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVC--DLSCNRVASYAKRFAAKEAF 59
I GIG DI ++RI+ + R F R + E D + A RFAAKEAF
Sbjct: 2 IYGIGLDITELKRIASMAGRQKR-FAERILTRSELDQYYELSEKRKNEFLAGRFAAKEAF 60
Query: 60 SKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFP 119
SKA GTGI + +S++DIE+ GKPYI + + VH++I+
Sbjct: 61 SKAFGTGIGRQLSFQDIEIRKDQNGKPYIICTKLSPA------------AVHVSITHTKE 108
Query: 120 FAQAFVVIESL 130
+A A VVIE L
Sbjct: 109 YAAAQVVIERL 119
>2jbz_A Holo-[acyl-carrier-protein] synthase; ACP, magnesium,
coenzyme A, transferase, poliketides, metal- binding,
lipid synthesis; HET: COA; 1.62A {Streptomyces
coelicolor} PDB: 2jca_A (A:)
Length = 143
Score = 97.5 bits (242), Expect = 5e-22
Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFS 60
IIG+G D+ ++R L+ R F E + VAS A RFAAKEA +
Sbjct: 22 SIIGVGIDVAEVERFGAALERTPA-LAGRLFLESELLLPGGERRGVASLAARFAAKEALA 80
Query: 61 KAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPF 120
KA+G G+ W D EV GG+P + ++G + + L H+++S D
Sbjct: 81 KALGAPA--GLLWTDAEVWVEAGGRPRLRVTGTVAARAAELGVAS----WHVSLSHDAGI 134
Query: 121 AQAFVVIES 129
A A V+ E
Sbjct: 135 ASAVVIAEG 143
>3f09_A Holo-[acyl-carrier-protein] synthase; structural genomics,
infectious deseases, cytoplasm, fatty acid biosynthesis,
lipid synthesis; 1.82A {Staphylococcus aureus subsp}
(A:)
Length = 143
Score = 94.3 bits (234), Expect = 5e-21
Identities = 44/132 (33%), Positives = 62/132 (46%), Gaps = 19/132 (14%)
Query: 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCD---LSCNRVASYAKRFAAKE 57
MI GIG D++ I RI L + R + EQ + ++ A RFA KE
Sbjct: 25 MIHGIGVDLIEIDRIQALYSKQPK-LVERILTKNEQHKFNNFTHEQRKIEFLAGRFATKE 83
Query: 58 AFSKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDD 117
AFSKA+GTG+ K V++ DI+ + GKP I G VH++IS
Sbjct: 84 AFSKALGTGLGKHVAFNDIDCYNDELGKPKIDYEGFI---------------VHVSISHT 128
Query: 118 FPFAQAFVVIES 129
+A + VV+E
Sbjct: 129 EHYAMSQVVLEK 140
>2c43_A Aminoadipate-semialdehyde dehydrogenase- phosphopantetheinyl
transferase; fatty acid biosynthesis, phosphopantetheine
transferase, coenzyme A; HET: COA; 1.93A {Homo sapiens}
PDB: 2byd_A* 2cg5_A* (A:)
Length = 323
Score = 75.0 bits (183), Expect = 3e-15
Identities = 18/121 (14%), Positives = 37/121 (30%), Gaps = 8/121 (6%)
Query: 12 IQRISRLLQSFNRKFESRCFSSLEQDVCDLSCN---RVASYAKRFAAKEAFSKAIGTGIS 68
R R F++ E + + ++ + + +A KE+F KAIG G+
Sbjct: 143 TSFPGRGSIPEFFHIMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALKESFIKAIGVGLG 202
Query: 69 KGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPFAQAFVVIE 128
+ + ++ + R L + K D A + +
Sbjct: 203 FELQRLEFDLSPLNLDIGQVYKETRL-----FLDGEEEKEWAFEESKIDEHHFVAVALRK 257
Query: 129 S 129
Sbjct: 258 P 258
>1qr0_A 4'-phosphopantetheinyl transferase SFP; protein-coenzyme A
complex; HET: COA; 1.90A {Bacillus subtilis} (A:)
Length = 228
Score = 58.8 bits (141), Expect = 2e-10
Identities = 19/131 (14%), Positives = 33/131 (25%), Gaps = 20/131 (15%)
Query: 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDL--SCNRVASYAKRFAAKEA 58
+ I++ + + R FS E + + ++ KE+
Sbjct: 97 GAFDSQPIGIDIEKTKP----ISLEIAKRFFSKTEYSDLLAKDKDEQTDYFYHLWSMKES 152
Query: 59 FSKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDF 118
F K G G+S V G+ I + S T D
Sbjct: 153 FIKQEGKGLSLP--LDSFSVRLHQDGQVSIELPDSHSP------------CYIKTYEVDP 198
Query: 119 PFAQAFVVIES 129
+ A
Sbjct: 199 GYKMAVCAAHP 209
Score = 25.2 bits (54), Expect = 3.0
Identities = 7/81 (8%), Positives = 17/81 (20%), Gaps = 3/81 (3%)
Query: 14 RISRLLQSFNRKFESRCFSSLEQDVCD---LSCNRVASYAKRFAAKEAFSKAIGTGISKG 70
+ R L + S +++ C + + + S+ S
Sbjct: 7 YMDRPLSQEENERFMTFISPEKREKCRRFYHKEDAHRTLLGDVLVRSVISRQYQLDKSDI 66
Query: 71 VSWKDIEVCHFPGGKPYISIS 91
P +
Sbjct: 67 RFSTQEYGKPCIPDLPDAHFN 87
>2nw8_A Tryptophan 2,3-dioxygenase; all alpha-helical protein,
structural genomics, PSI-2, protein structure
initiative; HET: TRP HEM; 1.60A {Xanthomonas campestris
PV} (A:)
Length = 268
Score = 27.6 bits (61), Expect = 0.66
Identities = 5/40 (12%), Positives = 16/40 (40%)
Query: 26 FESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFSKAIGT 65
F+S + +E + + + + +A A + + +
Sbjct: 108 FQSLQYRYIEFLLGNKNPQMLQVFAYDPAGQARLREVLEA 147
>1k0d_A URE2 protein; nitrate assimilation, structural genomics,
gene regulation; HET: GTT; 2.20A {Saccharomyces
cerevisiae} (A:1-107,A:250-260)
Length = 118
Score = 24.6 bits (53), Expect = 4.4
Identities = 8/62 (12%), Positives = 18/62 (29%), Gaps = 8/62 (12%)
Query: 69 KGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPFAQAFVVIE 128
G + I + G + S+ P P + D+ ++ ++
Sbjct: 41 LGFHYNTIFLDFNLGEHR--------APEFVSVNPNARVPALIDHGMDNLSIWESGAILL 92
Query: 129 SL 130
L
Sbjct: 93 HL 94
>1ppr_M PCP, peridinin-chlorophyll protein; light harvesting
protein, photosynthesis, carotenoids, dinoflagellates,
light-harvesting protein; HET: CLA PID DGD; 2.00A
{Amphidinium carterae} (M:158-312)
Length = 155
Score = 24.4 bits (53), Expect = 5.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 54 AAKEAFSKAIGTGISKGVSWKD 75
AA EA KAIG+ + GV+
Sbjct: 67 AAAEAHHKAIGSIDATGVTSAA 88
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.323 0.138 0.404
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 982,092
Number of extensions: 39359
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 18
Length of query: 132
Length of database: 4,956,049
Length adjustment: 79
Effective length of query: 53
Effective length of database: 2,285,454
Effective search space: 121129062
Effective search space used: 121129062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.3 bits)