RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780938|ref|YP_003065351.1| 4'-phosphopantetheinyl transferase [Candidatus Liberibacter asiaticus str. psy62] (132 letters) >3h88_A Holo-[acyl-carrier-protein] synthase; alpha-beta structure, structural genomics of infectious diseases, cytoplasm, fatty acid biosynthesis; HET: COA; 1.85A {Vibrio cholerae} (A:) Length = 129 Score = 131 bits (332), Expect = 2e-32 Identities = 49/127 (38%), Positives = 77/127 (60%), Gaps = 4/127 (3%) Query: 2 IIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFSK 61 I+G+G+DI I+R+ + L F R + E + S + AKRFAAKEA SK Sbjct: 5 IVGLGTDIAEIERVEKALARSGENFARRILTDSELEQFHASKQQGRFLAKRFAAKEAASK 64 Query: 62 AIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPFA 121 A+GTGI++GV++ D + H GKP + +SG+A+++ S L + +HL+ISD+ +A Sbjct: 65 ALGTGIAQGVTFHDFTISHDKLGKPLLILSGQAAELASQLQVEN----IHLSISDERHYA 120 Query: 122 QAFVVIE 128 A V++E Sbjct: 121 XATVILE 127 >3hqj_A Holo-[acyl-carrier-protein] synthase; AN/fold, structural genomics, israel structural proteomics center, ISPC, cytoplasm; HET: COA; 1.95A {Mycobacterium tuberculosis} (A:) Length = 130 Score = 130 bits (329), Expect = 5e-32 Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 13/135 (9%) Query: 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFS 60 I+G+G D+VSI + + F +D D S + A R+AAKEA Sbjct: 2 GIVGVGIDLVSIPDFAEQVDQPGTVFMETFTPGERRDASDKSSSAARHLAARWAAKEAVI 61 Query: 61 KAIGTGISK------GVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTI 114 KA +DIEV G+P + ++G ++ L+ +H+++ Sbjct: 62 KAWSGSRFAQRPMLPEDIHRDIEVVTDMWGRPRVRLTGAIAEYLAD-------VTIHVSL 114 Query: 115 SDDFPFAQAFVVIES 129 + + A A ++E+ Sbjct: 115 THEGDTAAAVAILEA 129 >2qg8_A Acyl carrier protein synthase PY06285; malaria, 3'5'ADP, SGC, structural genomics consortium, transferase; HET: A3P; 2.00A {Plasmodium yoelii yoelii} (A:) Length = 163 Score = 120 bits (303), Expect = 5e-29 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 23/147 (15%) Query: 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCN--------------RV 46 IIGIG+DI+ + RI ++L+ F + + E + Sbjct: 4 HIIGIGTDILCVNRIYKILEKNIN-FIKKVLNPFELAEFETQKKKLNEKINKSNELKKLA 62 Query: 47 ASYAKRFAAKEAFSKAIGTGISK----GVSWKDIEVCHFPGGKPYISISGRASDVLSSLV 102 +K+FAAKEA K++G G+S G+S DIE+ + GKP++ + G+A V + Sbjct: 63 IYVSKKFAAKEAILKSMGRGLSSISKYGLSMNDIEIKNDKYGKPHVYLYGKAKKVAYEMG 122 Query: 103 PKGYKPVVHLTISDDFPFAQAFVVIES 129 + L+ISD+ I S Sbjct: 123 IVK----IFLSISDEKIINSQTNNISS 145 >2was_A 3-oxoacyl-[acyl-carrier-protein] synthase; COA, FAS, PPT, NAD, NADP, transferase, phosphoprotein, oxidoreductase, lipid synthesis; 1.90A {Saccharomyces cerevisiae} PDB: 2wat_A* 2was_B (A:) Length = 122 Score = 112 bits (281), Expect = 2e-26 Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 9/126 (7%) Query: 4 GIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFSKAI 63 G+G D+ I I+ N F R F+ E + C + +S+A ++AKEA K++ Sbjct: 3 GVGVDVELITSINV----ENDTFIERNFTPQEIEYCSAQPSVQSSFAGTWSAKEAVFKSL 58 Query: 64 GT-GISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPFAQ 122 G + G + KDIE+ P + + G A V ++IS D A Sbjct: 59 GVKSLGGGAALKDIEIVRVNKNAPAVELHGNAKKAAEEAGVTD----VKVSISHDDLQAV 114 Query: 123 AFVVIE 128 A V Sbjct: 115 AVAVST 120 >1fth_A ACPS, acyl carrier protein synthase; bacterial fatty acid biosynthesis, acyl carrier synthase, coenzyme A, X-RAY crystallography; HET: A3P; 1.90A {Streptococcus pneumoniae} (A:) Length = 122 Score = 108 bits (272), Expect = 2e-25 Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 17/131 (12%) Query: 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCN--RVASYAKRFAAKEA 58 MI+G G DI + I + F R ++LE + ++ A R++AKEA Sbjct: 3 MIVGHGIDIEELASIESAVTRHEG-FAKRVLTALEMERFTSLKGRRQIEYLAGRWSAKEA 61 Query: 59 FSKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDF 118 FSKA+GTGI + ++D+EV + G PY S + + + L+IS Sbjct: 62 FSKAMGTGI-SKLGFQDLEVLNNERGAPYFSQAPFSGK-------------IWLSISHTD 107 Query: 119 PFAQAFVVIES 129 F A V++E Sbjct: 108 QFVTASVILEE 118 >3hyk_A Holo-[acyl-carrier-protein] synthase; structural genomics, infectious diseases, center for structural genomics of infectious diseases; HET: MSE A3P; 2.31A {Bacillus anthracis} (A:) Length = 122 Score = 106 bits (265), Expect = 1e-24 Identities = 51/131 (38%), Positives = 66/131 (50%), Gaps = 17/131 (12%) Query: 2 IIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVC--DLSCNRVASYAKRFAAKEAF 59 I+GIG DI+ + RI + L + F R + E++V A RFAAKEA+ Sbjct: 5 IVGIGIDIIELNRIEKXLDGKLK-FXERILTENERNVAKGLKGSRLTEFVAGRFAAKEAY 63 Query: 60 SKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFP 119 SKA+GTGI K VS+ DIEV + GKP + S VHL+IS Sbjct: 64 SKAVGTGIGKEVSFLDIEVRNDDRGKPILITSTEHI--------------VHLSISHSKE 109 Query: 120 FAQAFVVIESL 130 FA A VV+ES Sbjct: 110 FAVAQVVLESS 120 >2bdd_A ACP-synthase; structural genomics, structural genomics consortium, SGC, transferase; 2.28A {Plasmodium yoelii yoelii} (A:) Length = 182 Score = 101 bits (253), Expect = 3e-23 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 23/147 (15%) Query: 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCN--------------RV 46 IIGIG+DI+ + RI ++L+ F + + E + Sbjct: 23 HIIGIGTDILCVNRIYKILEKNIN-FIKKVLNPFELAEFETQKKKLNEKINKSNELKKLA 81 Query: 47 ASYAKRFAAKEAFSKAIGTGISK----GVSWKDIEVCHFPGGKPYISISGRASDVLSSLV 102 +K+FAAKEA K++G G+S G+S DIE+ + GKP++ + G+A V + Sbjct: 82 IYVSKKFAAKEAILKSMGRGLSSISKYGLSMNDIEIKNDKYGKPHVYLYGKAKKVAYEMG 141 Query: 103 PKGYKPVVHLTISDDFPFAQAFVVIES 129 + L+ISD+ I S Sbjct: 142 IVK----IFLSISDEKIINSQTNNISS 164 >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* (A:1684-1878) Length = 195 Score = 101 bits (252), Expect = 3e-23 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 9/130 (6%) Query: 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFS 60 +G D+ S+ I+ N +F SR F+ EQ C + N AS+A R+ AKEA Sbjct: 74 PASRVGVDVESVDSINI----DNEEFISRNFTEREQAYCRRAPNPRASFAGRWTAKEAIF 129 Query: 61 KAIGTGISK-GVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFP 119 K++G G + ++IEV + G P + + G A++ K V+++IS Sbjct: 130 KSLGVASKGAGAAMREIEVINDANGAPEVHLHGAAAEAAKQAGVKT----VNVSISHGDL 185 Query: 120 FAQAFVVIES 129 A A V + Sbjct: 186 QAVAVAVSRT 195 >1f7l_A Holo-(acyl carrier protein) synthase; 9-strand pseudo beta barrel protein, COA complex protein, coenzyme A complex, transferase; HET: COA; 1.50A {Bacillus subtilis} (A:) Length = 121 Score = 100 bits (251), Expect = 6e-23 Identities = 48/131 (36%), Positives = 65/131 (49%), Gaps = 15/131 (11%) Query: 2 IIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVC--DLSCNRVASYAKRFAAKEAF 59 I GIG DI ++RI+ + R F R + E D + A RFAAKEAF Sbjct: 2 IYGIGLDITELKRIASMAGRQKR-FAERILTRSELDQYYELSEKRKNEFLAGRFAAKEAF 60 Query: 60 SKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFP 119 SKA GTGI + +S++DIE+ GKPYI + + VH++I+ Sbjct: 61 SKAFGTGIGRQLSFQDIEIRKDQNGKPYIICTKLSPA------------AVHVSITHTKE 108 Query: 120 FAQAFVVIESL 130 +A A VVIE L Sbjct: 109 YAAAQVVIERL 119 >2jbz_A Holo-[acyl-carrier-protein] synthase; ACP, magnesium, coenzyme A, transferase, poliketides, metal- binding, lipid synthesis; HET: COA; 1.62A {Streptomyces coelicolor} PDB: 2jca_A (A:) Length = 143 Score = 97.5 bits (242), Expect = 5e-22 Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 7/129 (5%) Query: 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFS 60 IIG+G D+ ++R L+ R F E + VAS A RFAAKEA + Sbjct: 22 SIIGVGIDVAEVERFGAALERTPA-LAGRLFLESELLLPGGERRGVASLAARFAAKEALA 80 Query: 61 KAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPF 120 KA+G G+ W D EV GG+P + ++G + + L H+++S D Sbjct: 81 KALGAPA--GLLWTDAEVWVEAGGRPRLRVTGTVAARAAELGVAS----WHVSLSHDAGI 134 Query: 121 AQAFVVIES 129 A A V+ E Sbjct: 135 ASAVVIAEG 143 >3f09_A Holo-[acyl-carrier-protein] synthase; structural genomics, infectious deseases, cytoplasm, fatty acid biosynthesis, lipid synthesis; 1.82A {Staphylococcus aureus subsp} (A:) Length = 143 Score = 94.3 bits (234), Expect = 5e-21 Identities = 44/132 (33%), Positives = 62/132 (46%), Gaps = 19/132 (14%) Query: 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCD---LSCNRVASYAKRFAAKE 57 MI GIG D++ I RI L + R + EQ + ++ A RFA KE Sbjct: 25 MIHGIGVDLIEIDRIQALYSKQPK-LVERILTKNEQHKFNNFTHEQRKIEFLAGRFATKE 83 Query: 58 AFSKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDD 117 AFSKA+GTG+ K V++ DI+ + GKP I G VH++IS Sbjct: 84 AFSKALGTGLGKHVAFNDIDCYNDELGKPKIDYEGFI---------------VHVSISHT 128 Query: 118 FPFAQAFVVIES 129 +A + VV+E Sbjct: 129 EHYAMSQVVLEK 140 >2c43_A Aminoadipate-semialdehyde dehydrogenase- phosphopantetheinyl transferase; fatty acid biosynthesis, phosphopantetheine transferase, coenzyme A; HET: COA; 1.93A {Homo sapiens} PDB: 2byd_A* 2cg5_A* (A:) Length = 323 Score = 75.0 bits (183), Expect = 3e-15 Identities = 18/121 (14%), Positives = 37/121 (30%), Gaps = 8/121 (6%) Query: 12 IQRISRLLQSFNRKFESRCFSSLEQDVCDLSCN---RVASYAKRFAAKEAFSKAIGTGIS 68 R R F++ E + + ++ + + +A KE+F KAIG G+ Sbjct: 143 TSFPGRGSIPEFFHIMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALKESFIKAIGVGLG 202 Query: 69 KGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPFAQAFVVIE 128 + + ++ + R L + K D A + + Sbjct: 203 FELQRLEFDLSPLNLDIGQVYKETRL-----FLDGEEEKEWAFEESKIDEHHFVAVALRK 257 Query: 129 S 129 Sbjct: 258 P 258 >1qr0_A 4'-phosphopantetheinyl transferase SFP; protein-coenzyme A complex; HET: COA; 1.90A {Bacillus subtilis} (A:) Length = 228 Score = 58.8 bits (141), Expect = 2e-10 Identities = 19/131 (14%), Positives = 33/131 (25%), Gaps = 20/131 (15%) Query: 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDL--SCNRVASYAKRFAAKEA 58 + I++ + + R FS E + + ++ KE+ Sbjct: 97 GAFDSQPIGIDIEKTKP----ISLEIAKRFFSKTEYSDLLAKDKDEQTDYFYHLWSMKES 152 Query: 59 FSKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDF 118 F K G G+S V G+ I + S T D Sbjct: 153 FIKQEGKGLSLP--LDSFSVRLHQDGQVSIELPDSHSP------------CYIKTYEVDP 198 Query: 119 PFAQAFVVIES 129 + A Sbjct: 199 GYKMAVCAAHP 209 Score = 25.2 bits (54), Expect = 3.0 Identities = 7/81 (8%), Positives = 17/81 (20%), Gaps = 3/81 (3%) Query: 14 RISRLLQSFNRKFESRCFSSLEQDVCD---LSCNRVASYAKRFAAKEAFSKAIGTGISKG 70 + R L + S +++ C + + + S+ S Sbjct: 7 YMDRPLSQEENERFMTFISPEKREKCRRFYHKEDAHRTLLGDVLVRSVISRQYQLDKSDI 66 Query: 71 VSWKDIEVCHFPGGKPYISIS 91 P + Sbjct: 67 RFSTQEYGKPCIPDLPDAHFN 87 >2nw8_A Tryptophan 2,3-dioxygenase; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; HET: TRP HEM; 1.60A {Xanthomonas campestris PV} (A:) Length = 268 Score = 27.6 bits (61), Expect = 0.66 Identities = 5/40 (12%), Positives = 16/40 (40%) Query: 26 FESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFSKAIGT 65 F+S + +E + + + + +A A + + + Sbjct: 108 FQSLQYRYIEFLLGNKNPQMLQVFAYDPAGQARLREVLEA 147 >1k0d_A URE2 protein; nitrate assimilation, structural genomics, gene regulation; HET: GTT; 2.20A {Saccharomyces cerevisiae} (A:1-107,A:250-260) Length = 118 Score = 24.6 bits (53), Expect = 4.4 Identities = 8/62 (12%), Positives = 18/62 (29%), Gaps = 8/62 (12%) Query: 69 KGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPFAQAFVVIE 128 G + I + G + S+ P P + D+ ++ ++ Sbjct: 41 LGFHYNTIFLDFNLGEHR--------APEFVSVNPNARVPALIDHGMDNLSIWESGAILL 92 Query: 129 SL 130 L Sbjct: 93 HL 94 >1ppr_M PCP, peridinin-chlorophyll protein; light harvesting protein, photosynthesis, carotenoids, dinoflagellates, light-harvesting protein; HET: CLA PID DGD; 2.00A {Amphidinium carterae} (M:158-312) Length = 155 Score = 24.4 bits (53), Expect = 5.8 Identities = 10/22 (45%), Positives = 13/22 (59%) Query: 54 AAKEAFSKAIGTGISKGVSWKD 75 AA EA KAIG+ + GV+ Sbjct: 67 AAAEAHHKAIGSIDATGVTSAA 88 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.323 0.138 0.404 Gapped Lambda K H 0.267 0.0593 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 982,092 Number of extensions: 39359 Number of successful extensions: 112 Number of sequences better than 10.0: 1 Number of HSP's gapped: 83 Number of HSP's successfully gapped: 18 Length of query: 132 Length of database: 4,956,049 Length adjustment: 79 Effective length of query: 53 Effective length of database: 2,285,454 Effective search space: 121129062 Effective search space used: 121129062 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 50 (23.3 bits)