RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780938|ref|YP_003065351.1| 4'-phosphopantetheinyl
transferase [Candidatus Liberibacter asiaticus str. psy62]
(132 letters)
>d1f7la_ d.150.1.2 (A:) Holo-(acyl carrier protein) synthase ACPS
{Bacillus subtilis [TaxId: 1423]}
Length = 118
Score = 96.9 bits (241), Expect = 5e-22
Identities = 46/129 (35%), Positives = 65/129 (50%), Gaps = 15/129 (11%)
Query: 2 IIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLS--CNRVASYAKRFAAKEAF 59
I GIG DI ++RI+ + ++F R + E D + A RFAAKEAF
Sbjct: 2 IYGIGLDITELKRIASMAGR-QKRFAERILTRSELDQYYELSEKRKNEFLAGRFAAKEAF 60
Query: 60 SKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFP 119
SKA GTGI + +S++DIE+ GKPYI + + VH++I+
Sbjct: 61 SKAFGTGIGRQLSFQDIEIRKDQNGKPYIICTKLS------------PAAVHVSITHTKE 108
Query: 120 FAQAFVVIE 128
+A A VVIE
Sbjct: 109 YAAAQVVIE 117
>d1ftha_ d.150.1.2 (A:) Holo-(acyl carrier protein) synthase ACPS
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 117
Score = 94.3 bits (234), Expect = 3e-21
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 17/130 (13%)
Query: 1 MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCD--LSCNRVASYAKRFAAKEA 58
MI+G G DI + I + F R ++LE + ++ A R++AKEA
Sbjct: 1 MIVGHGIDIEELASIESAVTRHEG-FAKRVLTALEMERFTSLKGRRQIEYLAGRWSAKEA 59
Query: 59 FSKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDF 118
FSKA+GTGISK + ++D+EV + G PY S + + + L+IS
Sbjct: 60 FSKAMGTGISK-LGFQDLEVLNNERGAPYFSQAPFSGK-------------IWLSISHTD 105
Query: 119 PFAQAFVVIE 128
F A V++E
Sbjct: 106 QFVTASVILE 115
>d1qr0a2 d.150.1.1 (A:102-228) 4'-Phosphopantetheinyl transferase
SFP {Bacillus subtilis [TaxId: 1423]}
Length = 127
Score = 61.2 bits (148), Expect = 3e-11
Identities = 32/131 (24%), Positives = 45/131 (34%), Gaps = 14/131 (10%)
Query: 5 IGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDL--SCNRVASYAKRFAAKEAFSKA 62
IG DI + I + + R FS E + + ++ KE+F K
Sbjct: 3 IGIDIEKTKPI-------SLEIAKRFFSKTEYSDLLAKDKDEQTDYFYHLWSMKESFIKQ 55
Query: 63 IGTGISKGVSWKDIEVCHFPGGKPYISISGRASD--VLSSLVPKGYKPVVHLTISDDFPF 120
G G+S V G+ I + S + + V GYK V DFP
Sbjct: 56 EGKGLSLP--LDSFSVRLHQDGQVSIELPDSHSPCYIKTYEVDPGYKMAV-CAAHPDFPE 112
Query: 121 AQAFVVIESLL 131
V E LL
Sbjct: 113 DITMVSYEELL 123
>d2hvma_ c.1.8.5 (A:) Hevamine A (chitinase/lysozyme) {Para rubber
tree (Hevea brasiliensis) [TaxId: 3981]}
Length = 273
Score = 25.5 bits (55), Expect = 1.4
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 73 WKDIEVCHFPGGKPYISISG 92
I C G K +S+ G
Sbjct: 61 SNGIRSCQIQGIKVMLSLGG 80
>d1cnva_ c.1.8.5 (A:) Seed storage protein {Jack bean (Canavalia
ensiformis), Concanavalin B [TaxId: 3823]}
Length = 283
Score = 25.1 bits (54), Expect = 2.4
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 73 WKDIEVCHFPGGKPYISISGRASDV 97
I+ C G K ++++ G
Sbjct: 66 ESQIKECQRMGVKVFLALGGPKGTY 90
>d3byqa1 d.79.9.1 (A:2-192) Uncharacterized protein BB2672
{Bordetella bronchiseptica [TaxId: 518]}
Length = 191
Score = 24.7 bits (54), Expect = 3.1
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 57 EAFSKAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSS 100
E +SKA G+ + V H GG S+ G ++ +
Sbjct: 76 EVYSKAAIVGV--DGEMEHGAVWHEAGGWAMRSVLGEPKAMVPA 117
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA
polymerases {Archaeon Thermococcus gorgonarius [TaxId:
71997]}
Length = 347
Score = 24.0 bits (51), Expect = 4.9
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 83 GGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDF 118
GKP I I + + + ++P ++ + DD
Sbjct: 11 DGKPVIRIFKKENGEFKIDYDRNFEPYIYALLKDDS 46
>d1oyja1 a.45.1.1 (A:86-230) Class tau GST {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 145
Score = 23.9 bits (51), Expect = 5.0
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 29 RCFSSLEQDVCDLSCNRVASYAKRFAAKEAFSKAI 63
+ + R+A++A+R ++ K +
Sbjct: 92 YSYERCGGFSVEEVAPRLAAWARRCGRIDSVVKHL 126
>d1pprm2 a.131.1.1 (M:157-312) Peridinin-chlorophyll protein
{Dinoflagellate (Amphidinium carterae) [TaxId: 2961]}
Length = 156
Score = 23.7 bits (51), Expect = 5.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 54 AAKEAFSKAIGTGISKGVSWKD 75
AA EA KAIG+ + GV+
Sbjct: 68 AAAEAHHKAIGSIDATGVTSAA 89
>d2qtpa1 d.79.9.1 (A:3-171) Uncharacterized protein SPO0826
{Silicibacter pomeroyi [TaxId: 89184]}
Length = 169
Score = 23.1 bits (50), Expect = 8.1
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 9/48 (18%)
Query: 57 EAFSKAIGTGISKGVSWKDIE----VCHFPGGKPYISISGRASDVLSS 100
E++ K+ G + ++E + H G P + + ++ S
Sbjct: 75 ESYGKSAMVGENG-----ELEHAAAILHPKLGAPLRKAVEKGAALVPS 117
>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Thermotoga maritima [TaxId: 2336]}
Length = 157
Score = 23.0 bits (48), Expect = 8.3
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 11/41 (26%)
Query: 73 WKDIEVCHFPGGKPYISISGRASDV---------LSSLVPK 104
+ D+E + + IS +S V ++ VP
Sbjct: 108 YSDLETVFLIASEKFSFIS--SSLVKEVALYGGDVTEWVPP 146
>d1ta3a_ c.1.8.5 (A:) Xylanase inhibitor protein I, XIP-I {Wheat
(Triticum aestivum) [TaxId: 4565]}
Length = 274
Score = 23.2 bits (49), Expect = 9.2
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 73 WKDIEVCHFPGGKPYISISG 92
DI+ C G +SI G
Sbjct: 60 GADIKHCQSKGVPVSLSIGG 79
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.404
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 491,433
Number of extensions: 20594
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 14
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.4 bits)