BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780938|ref|YP_003065351.1| 4'-phosphopantetheinyl
transferase [Candidatus Liberibacter asiaticus str. psy62]
         (132 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780938|ref|YP_003065351.1| 4'-phosphopantetheinyl transferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 132

 Score =  266 bits (680), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 132/132 (100%), Positives = 132/132 (100%)

Query: 1   MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFS 60
           MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFS
Sbjct: 1   MIIGIGSDIVSIQRISRLLQSFNRKFESRCFSSLEQDVCDLSCNRVASYAKRFAAKEAFS 60

Query: 61  KAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPF 120
           KAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPF
Sbjct: 61  KAIGTGISKGVSWKDIEVCHFPGGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPF 120

Query: 121 AQAFVVIESLLI 132
           AQAFVVIESLLI
Sbjct: 121 AQAFVVIESLLI 132


>gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 789

 Score = 25.4 bits (54), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 44  NRVASYAKRFA------AKEAFSKAIGTGISKGVSWKDIEVC 79
           NR AS+A++        AK+ F K +   ISKG+     EVC
Sbjct: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVC 679


>gi|254780920|ref|YP_003065333.1| dTDP-glucose 4,6-dehydratase [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 358

 Score = 24.6 bits (52), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 19 LQSFNRKFESRCFSSLEQDVCDLSCNRVA 47
          L S     +S  FS L+ D+CD  C R A
Sbjct: 40 LNSLKEISQSNLFSFLQVDICDRECIRSA 68


>gi|255764461|ref|YP_003064629.2| methionyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 511

 Score = 23.9 bits (50), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 12/37 (32%)

Query: 12  IQRISRLLQSF-----NRKF-------ESRCFSSLEQ 36
           I++++ LLQ+F     N+ F       E+RCF SL+Q
Sbjct: 455 IRQLAILLQAFVPKLANKIFDILFVADENRCFQSLDQ 491


>gi|254781166|ref|YP_003065579.1| enoyl-(acyl carrier protein) reductase [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 284

 Score = 23.9 bits (50), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 8/33 (24%), Positives = 18/33 (54%)

Query: 63 IGTGISKGVSWKDIEVCHFPGGKPYISISGRAS 95
          +G   ++ ++W   ++CH  G K  ++  G A+
Sbjct: 16 LGVANNRSLAWSIAKMCHAAGAKVALTWQGDAT 48


>gi|254780399|ref|YP_003064812.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 594

 Score = 22.3 bits (46), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 17/42 (40%)

Query: 83  GGKPYISISGRASDVLSSLVPKGYKPVVHLTISDDFPFAQAF 124
           GGK +  I+     + S  +P   +      ISDDF     F
Sbjct: 49  GGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTF 90


>gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 803

 Score = 21.6 bits (44), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 87  YISISGRASDVLSSLVPKGYK 107
           +I ISG A D  S  +PK  K
Sbjct: 758 FIFISGYAEDAFSKNLPKDAK 778


>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 438

 Score = 21.6 bits (44), Expect = 5.9,   Method: Composition-based stats.
 Identities = 9/13 (69%), Positives = 11/13 (84%)

Query: 120 FAQAFVVIESLLI 132
           FA+AFVV  SLL+
Sbjct: 155 FARAFVVFPSLLL 167


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.138    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,815
Number of Sequences: 1233
Number of extensions: 3201
Number of successful extensions: 9
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 8
length of query: 132
length of database: 328,796
effective HSP length: 65
effective length of query: 67
effective length of database: 248,651
effective search space: 16659617
effective search space used: 16659617
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 34 (17.7 bits)