HHsearch alignment for GI: 254780939 and conserved domain: COG4959

>COG4959 TraF Type IV secretory pathway, protease TraF [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].
Probab=99.31  E-value=3.9e-12  Score=96.18  Aligned_cols=106  Identities=25%  Similarity=0.439  Sum_probs=78.7

Q ss_pred             CCC-CCCCEEEEECCCCC------------HHHEEEEEEEECHHHEEECCCCEEECCCCCCCCCCCCCEEECCCCCCEEE
Q ss_conf             553-34704664014420------------03100000030423432007732453531224544640022147862012
Q gi|254780939|r   83 NQP-RRGDVVVFRYPKDP------------SIDYVKRVIGLPGDRISLEKGIIYINGAPVVRHMEGYFSYHYKEDWSSNV  149 (248)
Q Consensus        83 ~~p-~RGDIVVF~~P~d~------------~~~yVKRvIGlPGDtV~i~~~~l~INg~~i~~~~~~~~~~~~~~~~~~~~  149 (248)
T Consensus        51 ~~Pvt~g~lV~v~pP~~~a~~aA~RGYLp~~~pllK~i~Alpgq~Vci~~~~I~I~G~~v~~sl~~D-------~-----  118 (173)
T COG4959          51 SAPVTKGDLVLVCPPQRAAFLAAQRGYLPPYIPLLKRILALPGQHVCITSQGIAIDGKPVAASLPVD-------R-----  118 (173)
T ss_pred             CCCCCCCCEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHCCCCCCEEEECCEEEECCEEEEEECCCC-------C-----
T ss_conf             7875368889987970676767653766666278998751799827873361789899812340225-------6-----


Q ss_pred             EEECCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCHHHEEEEEEEEE
Q ss_conf             21022146785000221245578874530232446499971788777644536530260888253389999
Q gi|254780939|r  150 PIFQEKLSNGVLYNVLSQDFLAPSSNISEFLVPKGHYFMMGDNRDKSKDSRWVEVGFVPEENLVGRASFVL  220 (248)
Q Consensus       150 ~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~VP~g~yfvlGDNRdnS~DSR~~~~G~Vp~~~IvGka~~i~  220 (248)
T Consensus       119 --------~GR~lp~~---------~gcR-~l~~~el~lL~~~~~~SfDsRY--fGpipas~vig~aRPvw  169 (173)
T COG4959         119 --------VGRALPRW---------QGCR-YLAPSELLLLTDRSSTSFDSRY--FGPIPASQVIGVARPVW  169 (173)
T ss_pred             --------CCCCCCCC---------CCCC-EECCCEEEEEECCCCCCCCCCE--ECCCCHHHCCEEEEEEE
T ss_conf             --------67758763---------6872-5568727998456776554422--05667788101111100