HHsearch alignment for GI: 254780939 and conserved domain: COG4959
>COG4959 TraF Type IV secretory pathway, protease TraF [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].
Probab=99.31 E-value=3.9e-12 Score=96.18 Aligned_cols=106 Identities=25% Similarity=0.439 Sum_probs=78.7
Q ss_pred CCC-CCCCEEEEECCCCC------------HHHEEEEEEEECHHHEEECCCCEEECCCCCCCCCCCCCEEECCCCCCEEE
Q ss_conf 553-34704664014420------------03100000030423432007732453531224544640022147862012
Q gi|254780939|r 83 NQP-RRGDVVVFRYPKDP------------SIDYVKRVIGLPGDRISLEKGIIYINGAPVVRHMEGYFSYHYKEDWSSNV 149 (248)
Q Consensus 83 ~~p-~RGDIVVF~~P~d~------------~~~yVKRvIGlPGDtV~i~~~~l~INg~~i~~~~~~~~~~~~~~~~~~~~ 149 (248)
T Consensus 51 ~~Pvt~g~lV~v~pP~~~a~~aA~RGYLp~~~pllK~i~Alpgq~Vci~~~~I~I~G~~v~~sl~~D-------~----- 118 (173)
T COG4959 51 SAPVTKGDLVLVCPPQRAAFLAAQRGYLPPYIPLLKRILALPGQHVCITSQGIAIDGKPVAASLPVD-------R----- 118 (173)
T ss_pred CCCCCCCCEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHCCCCCCEEEECCEEEECCEEEEEECCCC-------C-----
T ss_conf 7875368889987970676767653766666278998751799827873361789899812340225-------6-----
Q ss_pred EEECCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCHHHEEEEEEEEE
Q ss_conf 21022146785000221245578874530232446499971788777644536530260888253389999
Q gi|254780939|r 150 PIFQEKLSNGVLYNVLSQDFLAPSSNISEFLVPKGHYFMMGDNRDKSKDSRWVEVGFVPEENLVGRASFVL 220 (248)
Q Consensus 150 ~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~VP~g~yfvlGDNRdnS~DSR~~~~G~Vp~~~IvGka~~i~ 220 (248)
T Consensus 119 --------~GR~lp~~---------~gcR-~l~~~el~lL~~~~~~SfDsRY--fGpipas~vig~aRPvw 169 (173)
T COG4959 119 --------VGRALPRW---------QGCR-YLAPSELLLLTDRSSTSFDSRY--FGPIPASQVIGVARPVW 169 (173)
T ss_pred --------CCCCCCCC---------CCCC-EECCCEEEEEECCCCCCCCCCE--ECCCCHHHCCEEEEEEE
T ss_conf --------67758763---------6872-5568727998456776554422--05667788101111100