HHsearch alignment for GI: 254780939 and conserved domain: PHA00361
>PHA00361 cI Repressor.
Probab=96.20 E-value=0.011 Score=36.73 Aligned_cols=56 Identities=29% Similarity=0.393 Sum_probs=39.7
Q ss_pred HHEEEEEEEECCCCCCC----CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEE
Q ss_conf 75168989987866776----43369889998400587664122115422221125553347046640144200310000
Q gi|254780939|r 31 RTFLFQPSVIPSGSMIP----TLLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKR 106 (248)
Q Consensus 31 r~fv~~~f~Ips~SM~P----TL~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKR 106 (248)
T Consensus 72 ~~F~---L~V~GdSM~~p~g~~~~~Gd~iiVdp----------------------~~~~~~G~~VvA~~~~~~ea-T~K~ 125 (165)
T PHA00361 72 RTFW---LEVEGDSMTAPTGLSFPEGDSILVDP----------------------EVEAEPGDLVIARLEGASEA-TFKK 125 (165)
T ss_pred CEEE---EEEECCCCCCCCCCCCCCCCEEEECC----------------------CCCCCCCCEEEEEECCCCCE-EEEE
T ss_conf 8899---99966767887568738999999827----------------------87578899999996899834-8999
Q ss_pred EEEECH
Q ss_conf 003042
Q gi|254780939|r 107 VIGLPG 112 (248)
Q Consensus 107 vIGlPG 112 (248)
T Consensus 126 l~~d~~ 131 (165)
T PHA00361 126 LIIDGG 131 (165)
T ss_pred EEEECC
T ss_conf 999599