HHsearch alignment for GI: 254780939 and conserved domain: TIGR02754
>TIGR02754 sod_Ni_protease nickel-type superoxide dismutase maturation protease; InterPro: IPR014124 Members of this protein family are predicted proteases that are encoded adjacent to the genes for a nickel-type superoxide dismutase (IPR014123 from INTERPRO). This family of predicted peptidases belong to MEROPS peptidase subfamily S26A (signal peptidase I), which have a Ser/Lys catalytic dyad..
Probab=99.61 E-value=1.6e-15 Score=117.58 Aligned_cols=89 Identities=39% Similarity=0.564 Sum_probs=77.3
Q ss_pred EEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEEEEEECHHHEEE
Q ss_conf 99878667764336988999840058766412211542222112555334704664014420031000000304234320
Q gi|254780939|r 38 SVIPSGSMIPTLLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVIGLPGDRISL 117 (248)
Q Consensus 38 f~Ips~SM~PTL~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKRvIGlPGDtV~i 117 (248)
T Consensus 1 ~kV~G~SM~P~L~~~D~~~V~P~~~~~------------------r~~~~G~v~v~~HP~~p~~~~iKRL~~-------- 54 (90)
T TIGR02754 1 LKVTGESMSPTLKPGDRILVRPLLKIA------------------RVPPIGEVVVVRHPLKPSLLIIKRLAA-------- 54 (90)
T ss_pred CEECCCCCCCCCCCCCEEEEEECCCCC------------------CCCCCCEEEEEECCCCCCEEEEEEEEE--------
T ss_conf 944332157613988869883011023------------------487788089985698997478986132--------
Q ss_pred CCCCEEECCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEECCCCCCC
Q ss_conf 07732453531224544640022147862012210221467850002212455788745302324464999717887776
Q gi|254780939|r 118 EKGIIYINGAPVVRHMEGYFSYHYKEDWSSNVPIFQEKLSNGVLYNVLSQDFLAPSSNISEFLVPKGHYFMMGDNRDKSK 197 (248)
Q Consensus 118 ~~~~l~INg~~i~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~VP~g~yfvlGDNRdnS~ 197 (248)
T Consensus 55 ---------------------------------------------------------------~~~nG~~~LGDnp~ASt 71 (90)
T TIGR02754 55 ---------------------------------------------------------------VDDNGLFLLGDNPKAST 71 (90)
T ss_pred ---------------------------------------------------------------ECCCCCEEECCCCCCCC
T ss_conf ---------------------------------------------------------------31788388567377876
Q ss_pred CCCCCCCCCCCHHHEEEEEE
Q ss_conf 44536530260888253389
Q gi|254780939|r 198 DSRWVEVGFVPEENLVGRAS 217 (248)
Q Consensus 198 DSR~~~~G~Vp~~~IvGka~ 217 (248)
T Consensus 72 DSR--~~G~v~~~~L~G~v~ 89 (90)
T TIGR02754 72 DSR--QLGPVPRELLLGKVL 89 (90)
T ss_pred CCH--HHCCCCCHHEEEEEE
T ss_conf 712--105888202544785