HHsearch alignment for GI: 254780939 and conserved domain: TIGR02754

>TIGR02754 sod_Ni_protease nickel-type superoxide dismutase maturation protease; InterPro: IPR014124 Members of this protein family are predicted proteases that are encoded adjacent to the genes for a nickel-type superoxide dismutase (IPR014123 from INTERPRO). This family of predicted peptidases belong to MEROPS peptidase subfamily S26A (signal peptidase I), which have a Ser/Lys catalytic dyad..
Probab=99.61  E-value=1.6e-15  Score=117.58  Aligned_cols=89  Identities=39%  Similarity=0.564  Sum_probs=77.3

Q ss_pred             EEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEEEEEECHHHEEE
Q ss_conf             99878667764336988999840058766412211542222112555334704664014420031000000304234320
Q gi|254780939|r   38 SVIPSGSMIPTLLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVIGLPGDRISL  117 (248)
Q Consensus        38 f~Ips~SM~PTL~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKRvIGlPGDtV~i  117 (248)
T Consensus         1 ~kV~G~SM~P~L~~~D~~~V~P~~~~~------------------r~~~~G~v~v~~HP~~p~~~~iKRL~~--------   54 (90)
T TIGR02754         1 LKVTGESMSPTLKPGDRILVRPLLKIA------------------RVPPIGEVVVVRHPLKPSLLIIKRLAA--------   54 (90)
T ss_pred             CEECCCCCCCCCCCCCEEEEEECCCCC------------------CCCCCCEEEEEECCCCCCEEEEEEEEE--------
T ss_conf             944332157613988869883011023------------------487788089985698997478986132--------


Q ss_pred             CCCCEEECCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEEEEEECCCCCCC
Q ss_conf             07732453531224544640022147862012210221467850002212455788745302324464999717887776
Q gi|254780939|r  118 EKGIIYINGAPVVRHMEGYFSYHYKEDWSSNVPIFQEKLSNGVLYNVLSQDFLAPSSNISEFLVPKGHYFMMGDNRDKSK  197 (248)
Q Consensus       118 ~~~~l~INg~~i~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~VP~g~yfvlGDNRdnS~  197 (248)
T Consensus        55 ---------------------------------------------------------------~~~nG~~~LGDnp~ASt   71 (90)
T TIGR02754        55 ---------------------------------------------------------------VDDNGLFLLGDNPKAST   71 (90)
T ss_pred             ---------------------------------------------------------------ECCCCCEEECCCCCCCC
T ss_conf             ---------------------------------------------------------------31788388567377876


Q ss_pred             CCCCCCCCCCCHHHEEEEEE
Q ss_conf             44536530260888253389
Q gi|254780939|r  198 DSRWVEVGFVPEENLVGRAS  217 (248)
Q Consensus       198 DSR~~~~G~Vp~~~IvGka~  217 (248)
T Consensus        72 DSR--~~G~v~~~~L~G~v~   89 (90)
T TIGR02754        72 DSR--QLGPVPRELLLGKVL   89 (90)
T ss_pred             CCH--HHCCCCCHHEEEEEE
T ss_conf             712--105888202544785