HHsearch alignment for GI: 254780939 and conserved domain: cd06529

>cd06529 S24_LexA-like Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the
Probab=97.82  E-value=4.4e-05  Score=51.79  Aligned_cols=56  Identities=36%  Similarity=0.488  Sum_probs=43.9

Q ss_pred             EEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHEEEEEEEECHHHEE
Q ss_conf             89987866776433698899984005876641221154222211255533470466401442003100000030423432
Q gi|254780939|r   37 PSVIPSGSMIPTLLVGDYIIVNKFSYGYSKYSFPFSYNLFNGRIFNNQPRRGDVVVFRYPKDPSIDYVKRVIGLPGDRIS  116 (248)
Q Consensus        37 ~f~Ips~SM~PTL~~GD~i~VnK~~YG~~~~~~p~~~~~~~~~i~~~~p~RGDIVVF~~P~d~~~~yVKRvIGlPGDtV~  116 (248)
T Consensus         2 ~l~v~GdSM~P~i~~Gd~vivd~~----------------------~~~~~g~i~vv~~~~---~~~iKrl~~~~~~~~~   56 (81)
T cd06529           2 ALRVKGDSMEPTIPDGDLVLVDPS----------------------DTPRDGDIVVARLDG---ELTVKRLQRRGGGRLR   56 (81)
T ss_pred             EEEEECCCCCCCCCCCCEEEEECC----------------------CCCCCCCEEEEEECC---CCEEEEEEECCCCEEE
T ss_conf             899967747714069999999377----------------------504799899999759---8069999991896399


Q ss_pred             E
Q ss_conf             0
Q gi|254780939|r  117 L  117 (248)
Q Consensus       117 i  117 (248)
T Consensus        57 L   57 (81)
T cd06529          57 L   57 (81)
T ss_pred             E
T ss_conf             9